pre-miRNA Information
pre-miRNA hsa-mir-4446   
Genomic Coordinates chr3: 113594876 - 113594942
Description Homo sapiens miR-4446 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-4446-5p
Sequence 8| AUUUCCCUGCCAUUCCCUUGGC |29
Evidence Experimental
Experiments Illumina
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1356015605 6 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol LMAN1   
Synonyms ERGIC-53, ERGIC53, F5F8D, FMFD1, MCFD1, MR60, gp58
Description lectin, mannose binding 1
Transcript NM_005570   
Expression
Putative miRNA Targets on LMAN1
3'UTR of LMAN1
(miRNA target sites are highlighted)
>LMAN1|NM_005570|3'UTR
   1 CTACCATTTTCCTGTGTACTTCATCTATTTGTGTACAAAATGATGTCGTTTTGAGGGAATTTAAGTATTTAAATTGCTTC
  81 ATAGTCTAAATTATTAATTTTCTTAATAAAATAACTGTTTAAACATTGATTTGCAGTTAAGAATAAACCTTAAAGCAAAG
 161 ACAACCACATTTTAATTTGTTCACAGTATGTAAATCTGTCTAAATTTCAGTGAATTTCTGGTCAGTATGATGCAGCCTCT
 241 GAGCAGAATATTGACCAGTAAGAGGGTAAATAAAGTGGGGGCAACCCCTGGATATGAATGTTACCCCCTAAGTCTCCAAT
 321 ATTGCAGGTTTCCCTGTATAACGTAAACACACTTGCCCTCATGCCTCCCAGAATATGAGGTCTAATTAAGAAGTCCCATC
 401 AGGTTTATTTTGTAACCAAAGTCTTTTTTAGAGGTCAGACTTCCTAATCAAAGGCCTGGGCCTGCAGTCCTTTCATCTTA
 481 ATGCAACTTCCTTTGAAATCAAAGAATATTTTGTCTGAGAGCTTTAAGGATCTGGTAATAGACTTCAAAATGTTAAGTGA
 561 AATTTTTTTTTCCTCTATTTATCAATGATATATTTCACTTTTAAAGGAAATTTTAGAGGAAAATTAATAGCTGCTTTTTG
 641 CCTAAAAAACCTTGTGGGTGGAAACATTCCTCTGAGAATGGCTTTTATAGGTATTTTGCCTGGTAATGTATTCATTCATG
 721 ATTGCCCATATTCTTGAATGTCTTCATTCCAATGGGGTCAGGTCAATATTATGAAAATAATTTTTATATTTATATTTGTA
 801 ACTTAAGGAATTTATTTCTCCCTTTACTACAGCATGTAAATTCAGCTCAAATTGCATGATCTGAGGATTTAAATTCACAA
 881 AACCTGCCACTACATTCTGGTTTACATTAGTTACTTCATGCTGGCTGGGGTTAGTGACCATTTGCATACTCTTTTAAATC
 961 AAGGAGGCTGTAGTAGAAGCAGTTTTAAGATTCTTGAAGGCAAAATTTGAAAAACAGTGAATACTTCTAATTGTTTCCTT
1041 TTAGTGCCAGAACTAAGGACATTGTGAAGCACTTGTTAGTAAACTTAACCTTGAAATGTCAGACTGGAAGGAGTTTTTAT
1121 AGTCTTTGTGCATACTTCTAGGTATTACAGAAACAGTCTGTAAATGACATTTTAAGATGCAAATTTAATTCTGTTCACAG
1201 CTGATTTATACTGATTTTTGCTGCCTTCAAAATACTCTTTTACTTCTTTTAGCTAAAATGGTTGTCTTTCATTTGCCATA
1281 GAATTCCAAACAATACTATCTTATAAAATAGTACTGTTGAATTATTCCAAGCCTCCCTAGGTTTGCTCTCAAATGTCATT
1361 TACAGATTGGGCTAACGACCTAAAATCTATATATAAAGACTTTCTGAAGAACTCTGTATTATAGCAATACCAAACGAGTG
1441 CTGTGTGTGCAAACAGTCTGGCGTTGCTTTTTATGTTGATATTTATCCTAGAACACTGAAAGAGAATATGCCAGTGATAA
1521 CTCACTTTACTTCAGTCATTTCAACACAGAAAATGCTTCTCTAGCATTTTTCTTTTGTAGTGTTAACATTTTGAAATTCA
1601 TGTTTCAGAGGCTTCATCATCACAGAATTTACTCTTGCTCCATGAAAAAAAATTAAATACCTTCAGAGGAATATTTAAGT
1681 TGTAAACTATGAAACTTGAGAAATCCTCTTGAGATAAAAGGCTGCCAAATCCAGTATTATAAAGTCCATGGTCATATGTG
1761 CCTGTGCATTAAAGGAATACCAGATCTATGCAGTATACATTTTTCAGGCTGAAATTCAAGGGGAATCATTCTGATTATTC
1841 TTACTACAAATGGAGATGGCTATTATGAAACAGCATGAGCATGAGCCTTTTATCTTTTATACTTAGTGATATACTTTGCT
1921 TGAAAATCACTCAGCAAAGTAGTTCACATGATGTGTATCATATTTGAAGTGTGGTTTTTCTCAAAATCATTGACTTTAAG
2001 GAGCTCATTTCTGAACAAAAAGGTTTGCTCTGTGGAAAAATCAATCACTGCCAGGATTCTTTCATTTCTGTACTATTTTG
2081 TATAATTGAATTTGTTCACTTCTCTCACACCAGCAAGTGTTTTACAGGTGCCTTGGATTAAAACAAAATTGATTTTAAAA
2161 TTTTTATGTAAGTCATTGTGTCTATGATGCCACTTTTAAAAGGAAAATGCAATTGCGTAATGGCTTATATCCTTATTTAA
2241 TGTACCTATTTGTGTTCTAATAATTGTTTGAATGTTTTATTCAGCTTAAAACTTTACCATGAAGTCATAAACAGTAAACA
2321 ATGTTTTGTTATGTATTAAGGGGATATCAGTGTTTCTCAAAGTATGATCCATGGACCATCTGGGTCATGGCGCCTGGTTT
2401 CAGACAACCTGAATCAAATCTTAGGGGTGGGGCTTTGGGATGTCATTGTTCAATAGGCACCTCAGGAGATTCTGAGCACA
2481 CCAATGTTTGAGAACCACTAAAATGAGGAGTGGGAAAAAAAAAATAGGTGTTTTGTTAATTTAGAGCTGAGCTGAGAAGA
2561 TAATATATTTTTATTGTCAATGACATTAACAGATATGCACTGATTCTTTTATACCTACAATTTACTTAATGTTCCTTTTA
2641 TTAAAACGCGTGGTTCATGAGCAACTACAGACTGAATCCAGATTATTACCTGTTGCTTTCAGTATTTTCGTGATGGCTTT
2721 TAATCTTATGAAATCATCTTGAGATCATTCATGGTCAAGCCATGAAAACTCCCATCTTCAAGCCTGCCTGCTAAAGCTTC
2801 TTTGCCTTCCTGATTGTGATTATGGTAACAATTTATATCAGACAGTTGTACTTTTTGATAACTTAGGGAAAACAGAAATG
2881 ACTTGAACAAGGGATTGCCTGCCTCACTGCATTGCAGAGATACAATTTTTGTAAAGAACACAAATAGCAGTTGTGAATAT
2961 TAAGGTGTGATTATCTTTCCCTGTCCATGTGCTTATTGAAAGAAGATAGTGAACAAATGATTATATTGAGGATTTTTTTA
3041 ATTTATAAGATCTAATGTGAAATCCACACTTGGAACTTTTTAGATCTGTCTGTTGCTTGTTTAATATATTTCTTTTATGA
3121 CATTACTTAAAGTTTAAAAGGGTTTTCTATCCACTGTCAATTTCAATTGGATAACATTTTGTCAAGTTTTTTTTTTCCTG
3201 ATTATTTGATGCTAGCTGGAATTCAAGAAATGGCATTGACCTTATTCAAATAAAGAAATATTTTAGTAAAAAAAAAAAAA
3281 AAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' cgguucccuuaccGUCCCUUUa 5'
                       :||||||| 
Target 5' ctttttgataactTAGGGAAAa 3'
2851 - 2872 141.00 -10.40
2
miRNA  3' cgGUUC--CCUUACCGUCCCUUUa 5'
            ||:|  | |||   ||||:|| 
Target 5' ttCAGGCTGAAATTCAAGGGGAAt 3'
1803 - 1826 138.00 -13.10
3
miRNA  3' cggUUCCCUUACCGUC-CCUUUa 5'
             |||| |||  :|| ||||| 
Target 5' ttaAAGGAAATTTTAGAGGAAAa 3'
601 - 623 135.00 -10.30
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
889305 21 ClinVar
327567 48 ClinVar
327566 57 ClinVar
327565 164 ClinVar
889304 185 ClinVar
889303 210 ClinVar
889302 319 ClinVar
891735 416 ClinVar
327564 424 ClinVar
891734 480 ClinVar
327563 490 ClinVar
891733 492 ClinVar
891732 571 ClinVar
891731 652 ClinVar
891730 753 ClinVar
891480 763 ClinVar
891479 794 ClinVar
891478 860 ClinVar
327562 939 ClinVar
891477 1164 ClinVar
327561 1168 ClinVar
891476 1271 ClinVar
327560 1298 ClinVar
889925 1300 ClinVar
327559 1305 ClinVar
327558 1332 ClinVar
327557 1390 ClinVar
889924 1390 ClinVar
327556 1456 ClinVar
889923 1493 ClinVar
889922 1556 ClinVar
327555 1565 ClinVar
327554 1616 ClinVar
889248 1631 ClinVar
327553 1799 ClinVar
327552 1822 ClinVar
889247 1862 ClinVar
889246 1921 ClinVar
327551 1970 ClinVar
327550 1988 ClinVar
891658 2021 ClinVar
327549 2044 ClinVar
327548 2063 ClinVar
891657 2099 ClinVar
891656 2184 ClinVar
327547 2217 ClinVar
327546 2259 ClinVar
891655 2359 ClinVar
327545 2387 ClinVar
327544 2405 ClinVar
891410 2541 ClinVar
327543 2602 ClinVar
891409 2637 ClinVar
327542 2650 ClinVar
891408 2670 ClinVar
327541 2893 ClinVar
327540 2923 ClinVar
327539 2929 ClinVar
327538 3107 ClinVar
COSN30475292 11 COSMIC
COSN31575383 39 COSMIC
COSN7364347 46 COSMIC
COSN8604673 152 COSMIC
COSN29267684 307 COSMIC
COSN31961445 343 COSMIC
COSN17038043 353 COSMIC
COSN31567507 390 COSMIC
COSN9841318 402 COSMIC
COSN30159548 419 COSMIC
COSN31517224 504 COSMIC
COSN31485773 529 COSMIC
COSN31518515 649 COSMIC
COSN31571936 676 COSMIC
COSN17506329 882 COSMIC
COSN22438648 950 COSMIC
COSN18963994 1606 COSMIC
COSN6129011 1681 COSMIC
COSN9339407 1876 COSMIC
COSN32157387 1950 COSMIC
COSN20640392 1998 COSMIC
COSN29047138 2225 COSMIC
COSN32062815 2268 COSMIC
COSN20843513 2301 COSMIC
COSN216861 2478 COSMIC
COSN6129010 2484 COSMIC
COSN9339406 2515 COSMIC
COSN22331330 2566 COSMIC
COSN29243887 2643 COSMIC
COSN29902796 2681 COSMIC
COSN20669772 3153 COSMIC
COSN27309356 3186 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1465995346 3 dbSNP
rs749945102 5 dbSNP
rs767088740 6 dbSNP
rs758924300 15 dbSNP
rs2298713 21 dbSNP
rs1295830594 22 dbSNP
rs748840651 24 dbSNP
rs1403841306 25 dbSNP
rs761325294 27 dbSNP
rs778755024 31 dbSNP
rs1439220551 32 dbSNP
rs111790112 40 dbSNP
rs1268995725 42 dbSNP
rs941306165 43 dbSNP
rs763375389 45 dbSNP
rs370284286 47 dbSNP
rs148071519 48 dbSNP
rs1280526633 53 dbSNP
rs41355245 57 dbSNP
rs1417542974 67 dbSNP
rs927582453 77 dbSNP
rs932379084 86 dbSNP
rs1225139688 89 dbSNP
rs1213538005 96 dbSNP
rs772961315 100 dbSNP
rs1262441801 101 dbSNP
rs921035541 106 dbSNP
rs1195521451 108 dbSNP
rs1173761013 112 dbSNP
rs1471896193 114 dbSNP
rs1162962369 115 dbSNP
rs974121563 115 dbSNP
rs1407202336 124 dbSNP
rs941037511 124 dbSNP
rs1360405588 137 dbSNP
rs1401169260 143 dbSNP
rs1300372573 160 dbSNP
rs981895015 160 dbSNP
rs1243607058 162 dbSNP
rs41332251 164 dbSNP
rs866374974 166 dbSNP
rs1221613279 182 dbSNP
rs764761931 185 dbSNP
rs1488546393 186 dbSNP
rs1218715768 188 dbSNP
rs957746475 189 dbSNP
rs1189774397 198 dbSNP
rs182963083 210 dbSNP
rs999477804 214 dbSNP
rs1369313408 239 dbSNP
rs1473916090 256 dbSNP
rs980660824 257 dbSNP
rs1243119574 264 dbSNP
rs535185762 275 dbSNP
rs967405891 277 dbSNP
rs1420771845 279 dbSNP
rs530769416 294 dbSNP
rs1400499228 298 dbSNP
rs367640594 300 dbSNP
rs998254672 304 dbSNP
rs899909925 306 dbSNP
rs191169863 307 dbSNP
rs1005400095 319 dbSNP
rs1353884868 322 dbSNP
rs753776578 324 dbSNP
rs1242214878 326 dbSNP
rs1046978973 327 dbSNP
rs777616493 342 dbSNP
rs927683393 343 dbSNP
rs1444286852 350 dbSNP
rs1340540389 356 dbSNP
rs1177005318 357 dbSNP
rs1237633487 363 dbSNP
rs1050554834 365 dbSNP
rs1181027567 369 dbSNP
rs1376469811 380 dbSNP
rs781544243 382 dbSNP
rs551670872 384 dbSNP
rs947806582 389 dbSNP
rs1404813169 394 dbSNP
rs916352093 397 dbSNP
rs769038283 398 dbSNP
rs1448409177 402 dbSNP
rs989200510 403 dbSNP
rs1330400656 411 dbSNP
rs1362382747 414 dbSNP
rs140370262 416 dbSNP
rs1397712899 420 dbSNP
rs1339495044 421 dbSNP
rs886054037 424 dbSNP
rs1337279304 425 dbSNP
rs1449592282 430 dbSNP
rs899540058 432 dbSNP
rs768882471 445 dbSNP
rs926074463 448 dbSNP
rs1414472345 449 dbSNP
rs941140082 450 dbSNP
rs1424753638 455 dbSNP
rs1200282509 456 dbSNP
rs977736708 458 dbSNP
rs1379722459 459 dbSNP
rs1173340766 464 dbSNP
rs908212432 466 dbSNP
rs1169482714 480 dbSNP
rs117480907 490 dbSNP
rs755899010 492 dbSNP
rs927901043 503 dbSNP
rs752367572 506 dbSNP
rs1389398137 507 dbSNP
rs1387272183 518 dbSNP
rs1303392979 539 dbSNP
rs1484283413 539 dbSNP
rs1235859352 541 dbSNP
rs1217827822 543 dbSNP
rs1278637741 547 dbSNP
rs980991810 561 dbSNP
rs541441878 571 dbSNP
rs1263686401 572 dbSNP
rs1488232215 572 dbSNP
rs976740594 572 dbSNP
rs989572329 577 dbSNP
rs963986859 581 dbSNP
rs1193335532 583 dbSNP
rs1424805313 586 dbSNP
rs1018324535 591 dbSNP
rs1162344340 599 dbSNP
rs372134325 610 dbSNP
rs1043319 615 dbSNP
rs1006012369 641 dbSNP
rs890686798 644 dbSNP
rs767296743 645 dbSNP
rs1029248061 649 dbSNP
rs185861958 652 dbSNP
rs1025889511 657 dbSNP
rs561887209 664 dbSNP
rs543519613 668 dbSNP
rs144257348 672 dbSNP
rs146728337 691 dbSNP
rs906426861 701 dbSNP
rs41365547 708 dbSNP
rs947715022 724 dbSNP
rs1046686387 725 dbSNP
rs1464394776 726 dbSNP
rs1487086644 728 dbSNP
rs1179726889 740 dbSNP
rs939040733 741 dbSNP
rs759081167 751 dbSNP
rs894779165 752 dbSNP
rs182108487 753 dbSNP
rs936414845 754 dbSNP
rs1411680704 756 dbSNP
rs572735322 757 dbSNP
rs1480889203 758 dbSNP
rs947999492 758 dbSNP
rs1043320 759 dbSNP
rs977975953 760 dbSNP
rs915077070 763 dbSNP
rs1317168143 768 dbSNP
rs1351686718 769 dbSNP
rs989748545 772 dbSNP
rs370713431 774 dbSNP
rs1287423187 787 dbSNP
rs1319073169 788 dbSNP
rs140624225 790 dbSNP
rs766937075 791 dbSNP
rs534664183 794 dbSNP
rs1185050931 798 dbSNP
rs1273652994 798 dbSNP
rs1235821756 807 dbSNP
rs763506566 812 dbSNP
rs1438593747 814 dbSNP
rs567363045 818 dbSNP
rs1179146506 820 dbSNP
rs1246501416 835 dbSNP
rs758518077 836 dbSNP
rs1412710433 840 dbSNP
rs1319608314 845 dbSNP
rs1359535147 852 dbSNP
rs924039198 858 dbSNP
rs41331148 860 dbSNP
rs1310114000 862 dbSNP
rs1376100427 873 dbSNP
rs1018229623 876 dbSNP
rs1223886292 878 dbSNP
rs983233822 882 dbSNP
rs1217992455 885 dbSNP
rs753582427 891 dbSNP
rs954699681 900 dbSNP
rs1312109961 906 dbSNP
rs1205158383 910 dbSNP
rs1445285770 912 dbSNP
rs1400018607 914 dbSNP
rs1457066983 923 dbSNP
rs1294527089 927 dbSNP
rs1234129513 928 dbSNP
rs149781610 939 dbSNP
rs1190614464 943 dbSNP
rs1348381215 944 dbSNP
rs773660294 946 dbSNP
rs952892003 966 dbSNP
rs1043324 977 dbSNP
rs1425594533 978 dbSNP
rs1481325162 994 dbSNP
rs1398323970 996 dbSNP
rs1465317891 1004 dbSNP
rs374898828 1023 dbSNP
rs1332051633 1028 dbSNP
rs1356358773 1042 dbSNP
rs1025498145 1044 dbSNP
rs996437703 1045 dbSNP
rs963987752 1046 dbSNP
rs1368712693 1050 dbSNP
rs1225692071 1058 dbSNP
rs994423024 1069 dbSNP
rs1005023171 1077 dbSNP
rs886837833 1089 dbSNP
rs1046803153 1094 dbSNP
rs906335535 1108 dbSNP
rs1449435748 1128 dbSNP
rs1003129729 1130 dbSNP
rs906191464 1132 dbSNP
rs1045169028 1134 dbSNP
rs1440415646 1138 dbSNP
rs1043325 1140 dbSNP
rs1024905226 1145 dbSNP
rs947983525 1146 dbSNP
rs1168778819 1148 dbSNP
rs1012130650 1153 dbSNP
rs1421722474 1162 dbSNP
rs1382309890 1163 dbSNP
rs770166340 1168 dbSNP
rs1323009898 1169 dbSNP
rs190950830 1171 dbSNP
rs1407313983 1188 dbSNP
rs750825933 1191 dbSNP
rs1176696920 1196 dbSNP
rs1439055901 1199 dbSNP
rs935153294 1208 dbSNP
rs1271623767 1211 dbSNP
rs1353609977 1224 dbSNP
rs1267766978 1225 dbSNP
rs1227204150 1228 dbSNP
rs1289994754 1239 dbSNP
rs1361429584 1246 dbSNP
rs567318415 1253 dbSNP
rs367708687 1264 dbSNP
rs186096990 1271 dbSNP
rs1262197985 1272 dbSNP
rs533054303 1291 dbSNP
rs923986525 1295 dbSNP
rs762134361 1298 dbSNP
rs1264494097 1300 dbSNP
rs1244022063 1304 dbSNP
rs886054036 1305 dbSNP
rs1215806818 1317 dbSNP
rs1471946825 1322 dbSNP
rs1162681351 1330 dbSNP
rs779423308 1332 dbSNP
rs902279695 1335 dbSNP
rs1427110677 1336 dbSNP
rs35131539 1339 dbSNP
rs1042110473 1353 dbSNP
rs1355206741 1358 dbSNP
rs1283340060 1373 dbSNP
rs946228275 1376 dbSNP
rs776865076 1377 dbSNP
rs921934915 1386 dbSNP
rs1302354745 1389 dbSNP
rs566011013 1390 dbSNP
rs1446848117 1398 dbSNP
rs1365687217 1403 dbSNP
rs1293147943 1409 dbSNP
rs1041322149 1413 dbSNP
rs963637174 1414 dbSNP
rs1016948271 1416 dbSNP
rs757565878 1433 dbSNP
rs1285280812 1435 dbSNP
rs377481109 1436 dbSNP
rs547976585 1440 dbSNP
rs1420614409 1443 dbSNP
rs942949098 1448 dbSNP
rs754247174 1451 dbSNP
rs886054035 1456 dbSNP
rs906298695 1456 dbSNP
rs547465903 1462 dbSNP
rs984508226 1463 dbSNP
rs1177284319 1481 dbSNP
rs952716607 1485 dbSNP
rs918677858 1489 dbSNP
rs529247031 1493 dbSNP
rs1160596677 1494 dbSNP
rs1400518376 1507 dbSNP
rs970551333 1525 dbSNP
rs935267475 1528 dbSNP
rs780637110 1542 dbSNP
rs1407628124 1551 dbSNP
rs1443983225 1562 dbSNP
rs1024810643 1563 dbSNP
rs140930139 1565 dbSNP
rs1200652888 1572 dbSNP
rs1336220791 1575 dbSNP
rs1012204376 1576 dbSNP
rs959258436 1579 dbSNP
rs1032236752 1585 dbSNP
rs1241105686 1587 dbSNP
rs902343930 1592 dbSNP
rs1051618051 1600 dbSNP
rs1431239369 1601 dbSNP
rs1264036135 1606 dbSNP
rs1462852262 1606 dbSNP
rs1196768302 1608 dbSNP
rs543483287 1616 dbSNP
rs767155286 1631 dbSNP
rs1042536085 1632 dbSNP
rs1283236072 1638 dbSNP
rs1176666524 1641 dbSNP
rs1407791162 1651 dbSNP
rs1463748494 1653 dbSNP
rs8096438 1653 dbSNP
rs901386875 1654 dbSNP
rs1041185275 1659 dbSNP
rs780091823 1664 dbSNP
rs1393053262 1667 dbSNP
rs1321566192 1669 dbSNP
rs942976865 1690 dbSNP
rs181554301 1715 dbSNP
rs1215285260 1718 dbSNP
rs909434705 1733 dbSNP
rs1284985833 1740 dbSNP
rs772205316 1746 dbSNP
rs1217035025 1753 dbSNP
rs983661673 1754 dbSNP
rs1481031605 1761 dbSNP
rs1350538773 1764 dbSNP
rs1265930384 1766 dbSNP
rs1451565152 1774 dbSNP
rs1048610487 1777 dbSNP
rs1200534939 1779 dbSNP
rs749215022 1781 dbSNP
rs931312515 1783 dbSNP
rs1431912013 1785 dbSNP
rs951007807 1788 dbSNP
rs918555150 1797 dbSNP
rs1043334 1799 dbSNP
rs1373135507 1805 dbSNP
rs1463108979 1821 dbSNP
rs151128517 1822 dbSNP
rs917779852 1840 dbSNP
rs990670548 1846 dbSNP
rs1338228250 1848 dbSNP
rs1011879959 1850 dbSNP
rs1295186666 1851 dbSNP
rs959165580 1852 dbSNP
rs1229650080 1857 dbSNP
rs1263779817 1858 dbSNP
rs893452939 1862 dbSNP
rs1223976218 1871 dbSNP
rs866041053 1873 dbSNP
rs1271479147 1878 dbSNP
rs1487541536 1879 dbSNP
rs1032048346 1881 dbSNP
rs1261954874 1884 dbSNP
rs755885258 1898 dbSNP
rs1184712021 1912 dbSNP
rs752469215 1917 dbSNP
rs1425215545 1918 dbSNP
rs74735102 1921 dbSNP
rs542171763 1923 dbSNP
rs142975697 1927 dbSNP
rs1000752346 1929 dbSNP
rs555414653 1932 dbSNP
rs1174230987 1940 dbSNP
rs780929307 1943 dbSNP
rs966819252 1950 dbSNP
rs1020613372 1955 dbSNP
rs1310658775 1957 dbSNP
rs900547135 1960 dbSNP
rs1039538264 1961 dbSNP
rs754694305 1969 dbSNP
rs886054034 1970 dbSNP
rs537126340 1971 dbSNP
rs1261694429 1979 dbSNP
rs1464537409 1980 dbSNP
rs1486603549 1980 dbSNP
rs886054033 1988 dbSNP
rs1171186130 1989 dbSNP
rs942162514 1998 dbSNP
rs901581467 2001 dbSNP
rs1378361778 2006 dbSNP
rs1439031483 2007 dbSNP
rs1159489717 2016 dbSNP
rs909215639 2018 dbSNP
rs140144803 2021 dbSNP
rs557664062 2022 dbSNP
rs929547200 2032 dbSNP
rs1007025018 2038 dbSNP
rs889925553 2042 dbSNP
rs1405404306 2043 dbSNP
rs191555835 2044 dbSNP
rs1192216965 2057 dbSNP
rs7239187 2063 dbSNP
rs897181596 2082 dbSNP
rs1257743850 2091 dbSNP
rs1202669430 2094 dbSNP
rs1207553342 2095 dbSNP
rs41373245 2096 dbSNP
rs765984474 2099 dbSNP
rs1461513805 2102 dbSNP
rs1204961686 2108 dbSNP
rs186718321 2119 dbSNP
rs957834259 2121 dbSNP
rs1177769918 2124 dbSNP
rs1031995758 2127 dbSNP
rs1431270083 2145 dbSNP
rs1175134576 2156 dbSNP
rs1428802416 2157 dbSNP
rs918019334 2160 dbSNP
rs1338711156 2167 dbSNP
rs41383645 2167 dbSNP
rs966596288 2168 dbSNP
rs937845304 2171 dbSNP
rs925139992 2175 dbSNP
rs1276561303 2180 dbSNP
rs997327553 2180 dbSNP
rs1218310250 2182 dbSNP
rs41370447 2184 dbSNP
rs1038907840 2187 dbSNP
rs1006700393 2191 dbSNP
rs147514337 2196 dbSNP
rs1255592608 2197 dbSNP
rs1394190735 2208 dbSNP
rs1021065987 2212 dbSNP
rs975736354 2216 dbSNP
rs7236294 2217 dbSNP
rs1331742359 2228 dbSNP
rs929309953 2230 dbSNP
rs1487479187 2235 dbSNP
rs1466993915 2240 dbSNP
rs1421287148 2242 dbSNP
rs1269342431 2245 dbSNP
rs886054032 2259 dbSNP
rs1480886250 2278 dbSNP
rs1169512639 2282 dbSNP
rs1178919941 2286 dbSNP
rs1472945557 2291 dbSNP
rs762170326 2295 dbSNP
rs1409492625 2296 dbSNP
rs772976767 2296 dbSNP
rs1171258328 2297 dbSNP
rs928856821 2298 dbSNP
rs1434960203 2302 dbSNP
rs776994251 2306 dbSNP
rs531673150 2311 dbSNP
rs1007223083 2314 dbSNP
rs1346611524 2320 dbSNP
rs564651529 2328 dbSNP
rs1275955615 2332 dbSNP
rs764498929 2332 dbSNP
rs1369670725 2335 dbSNP
rs1214599853 2338 dbSNP
rs1184811942 2341 dbSNP
rs1274520462 2344 dbSNP
rs769902421 2346 dbSNP
rs41522247 2359 dbSNP
rs916044195 2360 dbSNP
rs776633535 2365 dbSNP
rs1201816703 2366 dbSNP
rs1199604571 2371 dbSNP
rs897424573 2372 dbSNP
rs1475220847 2380 dbSNP
rs527848336 2384 dbSNP
rs949373785 2386 dbSNP
rs34679996 2387 dbSNP
rs977715067 2389 dbSNP
rs1055256535 2391 dbSNP
rs938103159 2392 dbSNP
rs1366549516 2396 dbSNP
rs34753206 2405 dbSNP
rs997840398 2406 dbSNP
rs1325433129 2408 dbSNP
rs1431022707 2417 dbSNP
rs1271431561 2422 dbSNP
rs979273084 2433 dbSNP
rs964683266 2440 dbSNP
rs575243760 2442 dbSNP
rs913831296 2453 dbSNP
rs1361539331 2454 dbSNP
rs1006067675 2455 dbSNP
rs576929450 2478 dbSNP
rs975936251 2490 dbSNP
rs965684532 2501 dbSNP
rs1448994492 2504 dbSNP
rs1397813281 2508 dbSNP
rs1330485844 2510 dbSNP
rs1243906663 2513 dbSNP
rs1442900013 2514 dbSNP
rs1183098834 2521 dbSNP
rs1047809668 2525 dbSNP
rs76833559 2525 dbSNP
rs887822947 2525 dbSNP
rs745952841 2526 dbSNP
rs986318108 2527 dbSNP
rs951815607 2528 dbSNP
rs1384786609 2531 dbSNP
rs993576724 2538 dbSNP
rs1319931882 2539 dbSNP
rs907209594 2541 dbSNP
rs773157524 2546 dbSNP
rs1160885627 2547 dbSNP
rs1384829350 2554 dbSNP
rs1237872865 2561 dbSNP
rs1045752496 2564 dbSNP
rs564087154 2567 dbSNP
rs1380444316 2568 dbSNP
rs1179805446 2580 dbSNP
rs961810438 2583 dbSNP
rs1015857932 2588 dbSNP
rs948970702 2592 dbSNP
rs1460170628 2596 dbSNP
rs886054031 2602 dbSNP
rs1174358302 2606 dbSNP
rs1013843960 2610 dbSNP
rs916176403 2611 dbSNP
rs1442125296 2616 dbSNP
rs1236704311 2618 dbSNP
rs1181563780 2619 dbSNP
rs1452362107 2631 dbSNP
rs769626957 2637 dbSNP
rs936158898 2638 dbSNP
rs1055118930 2639 dbSNP
rs1468978142 2644 dbSNP
rs1002725980 2647 dbSNP
rs369259738 2648 dbSNP
rs1044169959 2649 dbSNP
rs886054030 2650 dbSNP
rs576194976 2653 dbSNP
rs183860353 2656 dbSNP
rs372450392 2657 dbSNP
rs1321594656 2662 dbSNP
rs1321165518 2664 dbSNP
rs1263821261 2670 dbSNP
rs1325820488 2673 dbSNP
rs781123499 2681 dbSNP
rs1040306167 2693 dbSNP
rs1438918511 2709 dbSNP
rs1184350937 2710 dbSNP
rs1267217930 2716 dbSNP
rs944616806 2729 dbSNP
rs543343093 2730 dbSNP
rs1430761549 2733 dbSNP
rs1360566263 2739 dbSNP
rs1459990396 2740 dbSNP
rs1166833060 2741 dbSNP
rs1397054091 2744 dbSNP
rs529657971 2746 dbSNP
rs1301063266 2751 dbSNP
rs111352808 2756 dbSNP
rs1404547556 2759 dbSNP
rs964958614 2767 dbSNP
rs541265159 2772 dbSNP
rs1333075536 2773 dbSNP
rs1379033556 2774 dbSNP
rs572178296 2779 dbSNP
rs1340593044 2785 dbSNP
rs1198148494 2798 dbSNP
rs1490302586 2799 dbSNP
rs1199657061 2810 dbSNP
rs1270533397 2823 dbSNP
rs1478568618 2827 dbSNP
rs144795065 2831 dbSNP
rs951773348 2835 dbSNP
rs920365047 2837 dbSNP
rs1463452830 2850 dbSNP
rs140429006 2854 dbSNP
rs1364703520 2857 dbSNP
rs1425013024 2862 dbSNP
rs972185961 2869 dbSNP
rs961577812 2878 dbSNP
rs1015764557 2885 dbSNP
rs1294934857 2887 dbSNP
rs143943495 2893 dbSNP
rs1231229792 2894 dbSNP
rs1313604761 2903 dbSNP
rs1196988106 2905 dbSNP
rs1359381459 2912 dbSNP
rs1223611456 2914 dbSNP
rs1013875085 2921 dbSNP
rs561819154 2923 dbSNP
rs960931434 2925 dbSNP
rs4806 2929 dbSNP
rs375081600 2931 dbSNP
rs1351335263 2938 dbSNP
rs1002221370 2941 dbSNP
rs758985179 2951 dbSNP
rs903816769 2965 dbSNP
rs1165163555 2972 dbSNP
rs1346859796 2973 dbSNP
rs1012935764 2991 dbSNP
rs570768292 2992 dbSNP
rs1288560899 2994 dbSNP
rs1043819434 2996 dbSNP
rs1385720683 3010 dbSNP
rs180710572 3011 dbSNP
rs1334808092 3014 dbSNP
rs779904446 3018 dbSNP
rs552596427 3025 dbSNP
rs1382605884 3036 dbSNP
rs1272895080 3039 dbSNP
rs1315259718 3051 dbSNP
rs757876155 3053 dbSNP
rs1237845958 3063 dbSNP
rs1260909428 3092 dbSNP
rs1340764220 3094 dbSNP
rs1010340065 3096 dbSNP
rs1299450811 3099 dbSNP
rs3760558 3107 dbSNP
rs1040168991 3123 dbSNP
rs944649245 3140 dbSNP
rs1343886402 3141 dbSNP
rs1461707290 3143 dbSNP
rs910487651 3155 dbSNP
rs1050736203 3156 dbSNP
rs930329717 3158 dbSNP
rs1364541803 3164 dbSNP
rs1459025534 3166 dbSNP
rs1041932178 3170 dbSNP
rs1405515724 3178 dbSNP
rs1453968783 3185 dbSNP
rs560718694 3186 dbSNP
rs1330696290 3197 dbSNP
rs923059843 3197 dbSNP
rs976131257 3197 dbSNP
rs1221382952 3198 dbSNP
rs749933158 3204 dbSNP
rs1480210624 3217 dbSNP
rs1323689392 3236 dbSNP
rs971874736 3237 dbSNP
rs1231064454 3245 dbSNP
rs78256747 3249 dbSNP
rs1177502524 3255 dbSNP
rs910243775 3259 dbSNP
rs1473686865 3263 dbSNP
rs1174609327 3270 dbSNP
rs961778757 3271 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HEK293S
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in GSM1084064. RNA binding protein: AGO2. Condition:CLIP_noemetine_AbnovaAb HITS-CLIP data was present in GSM1084079. RNA binding protein: AGO2. Condition:CLIP_hippuristanol_rep2_AbnovaAb ...

- Karginov FV; Hannon GJ, 2013, Genes & development.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' cgguucccuuaccguCCCUUUa 5'
                         |||||| 
Target 5' -----------gaguGGGAAAa 3'
1 - 11
Article - Karginov FV; Hannon GJ
- Genes & development, 2013
When adapting to environmental stress, cells attenuate and reprogram their translational output. In part, these altered translation profiles are established through changes in the interactions between RNA-binding proteins and mRNAs. The Argonaute 2 (Ago2)/microRNA (miRNA) machinery has been shown to participate in stress-induced translational up-regulation of a particular mRNA, CAT-1; however, a detailed, transcriptome-wide understanding of the involvement of Ago2 in the process has been lacking. Here, we profiled the overall changes in Ago2-mRNA interactions upon arsenite stress by cross-linking immunoprecipitation (CLIP) followed by high-throughput sequencing (CLIP-seq). Ago2 displayed a significant remodeling of its transcript occupancy, with the majority of 3' untranslated region (UTR) and coding sequence (CDS) sites exhibiting stronger interaction. Interestingly, target sites that were destined for release from Ago2 upon stress were depleted in miRNA complementarity signatures, suggesting an alternative mode of interaction. To compare the changes in Ago2-binding patterns across transcripts with changes in their translational states, we measured mRNA profiles on ribosome/polysome gradients by RNA sequencing (RNA-seq). Increased Ago2 occupancy correlated with stronger repression of translation for those mRNAs, as evidenced by a shift toward lighter gradient fractions upon stress, while release of Ago2 was associated with the limited number of transcripts that remained translated. Taken together, these data point to a role for Ago2 and the mammalian miRNAs in mediating the translational component of the stress response.
LinkOut: [PMID: 23824327]
CLIP-seq Support 1 for dataset GSM1084064
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_noemetine_AbnovaAb
Location of target site ENST00000251047.5 | 3UTR | AAAUGAGGAGUGGGAAAAAAAAAAUAGGUGUUUUGUU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM1084079
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_hippuristanol_rep2_AbnovaAb
Location of target site ENST00000251047.5 | 3UTR | GAGUGGGAAAAAAAAAAU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
223 hsa-miR-4446-5p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT078060 PCTP phosphatidylcholine transfer protein 2 2
MIRT099072 FOXC1 forkhead box C1 2 2
MIRT130186 TXNIP thioredoxin interacting protein 2 2
MIRT148786 NARS asparaginyl-tRNA synthetase 2 2
MIRT261965 SEPHS1 selenophosphate synthetase 1 2 2
MIRT345867 SRSF2 serine and arginine rich splicing factor 2 2 2
MIRT409087 HNRNPA2B1 heterogeneous nuclear ribonucleoprotein A2/B1 2 2
MIRT451883 SOD2 superoxide dismutase 2 2 4
MIRT469236 RHOB ras homolog family member B 2 2
MIRT469435 REL REL proto-oncogene, NF-kB subunit 2 2
MIRT483055 FOXB1 forkhead box B1 2 8
MIRT484640 TBC1D5 TBC1 domain family member 5 2 6
MIRT493106 MKNK2 MAP kinase interacting serine/threonine kinase 2 2 6
MIRT497307 TMEFF2 transmembrane protein with EGF like and two follistatin like domains 2 2 2
MIRT497798 GABRB1 gamma-aminobutyric acid type A receptor beta1 subunit 2 2
MIRT501273 SCARB2 scavenger receptor class B member 2 2 4
MIRT506756 KMT2D lysine methyltransferase 2D 2 2
MIRT511986 EEF2 eukaryotic translation elongation factor 2 2 4
MIRT513126 ZNF431 zinc finger protein 431 2 2
MIRT519733 ZNF394 zinc finger protein 394 2 4
MIRT520351 UBE2K ubiquitin conjugating enzyme E2 K 2 4
MIRT520542 TPPP tubulin polymerization promoting protein 2 8
MIRT530782 HDHD2 haloacid dehalogenase like hydrolase domain containing 2 2 2
MIRT531112 ZYG11B zyg-11 family member B, cell cycle regulator 2 2
MIRT532144 GALNT8 polypeptide N-acetylgalactosaminyltransferase 8 2 2
MIRT533208 WAPAL WAPL cohesin release factor 2 2
MIRT533419 TWF1 twinfilin actin binding protein 1 2 2
MIRT534063 SRSF10 serine and arginine rich splicing factor 10 2 2
MIRT534288 SLAIN2 SLAIN motif family member 2 2 2
MIRT537796 EFNB2 ephrin B2 2 2
MIRT538017 DNAJC10 DnaJ heat shock protein family (Hsp40) member C10 2 2
MIRT538058 DMD dystrophin 2 2
MIRT538132 DDI2 DNA damage inducible 1 homolog 2 2 2
MIRT538680 CCDC80 coiled-coil domain containing 80 2 2
MIRT538788 C3orf52 chromosome 3 open reading frame 52 2 2
MIRT542762 PPAP2B phospholipid phosphatase 3 2 2
MIRT546861 RAB10 RAB10, member RAS oncogene family 2 4
MIRT547418 MED4 mediator complex subunit 4 2 4
MIRT551633 TRUB1 TruB pseudouridine synthase family member 1 2 4
MIRT552329 ZNF704 zinc finger protein 704 2 2
MIRT556124 MFSD9 major facilitator superfamily domain containing 9 2 4
MIRT559290 ATXN1 ataxin 1 2 2
MIRT562125 IGFBP5 insulin like growth factor binding protein 5 2 2
MIRT563777 HUWE1 HECT, UBA and WWE domain containing 1, E3 ubiquitin protein ligase 2 2
MIRT564430 EIF2S3 eukaryotic translation initiation factor 2 subunit gamma 2 2
MIRT566102 RBPJ recombination signal binding protein for immunoglobulin kappa J region 2 2
MIRT567126 IRF2BP2 interferon regulatory factor 2 binding protein 2 2 2
MIRT571213 RRS1 ribosome biogenesis regulator homolog 2 2
MIRT571939 LCLAT1 lysocardiolipin acyltransferase 1 2 2
MIRT571967 KIF21A kinesin family member 21A 2 2
MIRT606792 IL1RAPL1 interleukin 1 receptor accessory protein like 1 2 8
MIRT607351 TNS1 tensin 1 2 4
MIRT609416 GJB7 gap junction protein beta 7 2 4
MIRT609522 AZI2 5-azacytidine induced 2 2 4
MIRT611218 FAM174B family with sequence similarity 174 member B 2 2
MIRT611385 TRIP10 thyroid hormone receptor interactor 10 2 2
MIRT612053 KLB klotho beta 2 4
MIRT612102 CHRM3 cholinergic receptor muscarinic 3 2 2
MIRT612146 SIX1 SIX homeobox 1 2 4
MIRT612488 SIX3 SIX homeobox 3 2 4
MIRT613685 QPRT quinolinate phosphoribosyltransferase 2 2
MIRT613763 TTC38 tetratricopeptide repeat domain 38 2 2
MIRT613876 FGD1 FYVE, RhoGEF and PH domain containing 1 2 2
MIRT613965 PPP1R3D protein phosphatase 1 regulatory subunit 3D 2 4
MIRT614894 PAPOLG poly(A) polymerase gamma 2 2
MIRT614912 NFIA nuclear factor I A 2 2
MIRT615013 ERGIC2 ERGIC and golgi 2 2 2
MIRT615106 BCL7A BCL tumor suppressor 7A 2 2
MIRT615242 FAM227A family with sequence similarity 227 member A 2 4
MIRT615695 NEGR1 neuronal growth regulator 1 2 2
MIRT615956 ERBB3 erb-b2 receptor tyrosine kinase 3 2 4
MIRT615979 FSTL4 follistatin like 4 2 2
MIRT616053 PTPRE protein tyrosine phosphatase, receptor type E 2 4
MIRT616073 TBX2 T-box 2 2 4
MIRT616234 NPAS3 neuronal PAS domain protein 3 2 2
MIRT616306 CELF2 CUGBP Elav-like family member 2 2 2
MIRT616474 MACC1 MACC1, MET transcriptional regulator 2 2
MIRT616662 ST3GAL1 ST3 beta-galactoside alpha-2,3-sialyltransferase 1 2 2
MIRT616887 ATP5E ATP synthase, H+ transporting, mitochondrial F1 complex, epsilon subunit 2 2
MIRT616902 LINC00598 long intergenic non-protein coding RNA 598 2 2
MIRT617025 SYT6 synaptotagmin 6 2 2
MIRT617162 SLC16A5 solute carrier family 16 member 5 2 2
MIRT617318 DPF3 double PHD fingers 3 2 2
MIRT617792 CHRM2 cholinergic receptor muscarinic 2 2 2
MIRT618418 DNAJC30 DnaJ heat shock protein family (Hsp40) member C30 2 2
MIRT618663 RPP40 ribonuclease P/MRP subunit p40 2 2
MIRT620212 VN1R1 vomeronasal 1 receptor 1 2 2
MIRT620413 TFDP3 transcription factor Dp family member 3 2 2
MIRT620667 BBS5 Bardet-Biedl syndrome 5 2 2
MIRT620709 ASB16 ankyrin repeat and SOCS box containing 16 2 2
MIRT620956 SFT2D2 SFT2 domain containing 2 2 2
MIRT621225 LMAN1 lectin, mannose binding 1 2 2
MIRT621333 SLC11A1 solute carrier family 11 member 1 2 2
MIRT621696 TSKU tsukushi, small leucine rich proteoglycan 2 2
MIRT623484 KCTD11 potassium channel tetramerization domain containing 11 2 2
MIRT623777 GOSR1 golgi SNAP receptor complex member 1 2 2
MIRT624215 DCAF5 DDB1 and CUL4 associated factor 5 2 2
MIRT624675 ARAP2 ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 2 2
MIRT627369 PRICKLE4 prickle planar cell polarity protein 4 2 2
MIRT628252 EFCAB14 EF-hand calcium binding domain 14 2 2
MIRT630790 TGIF2 TGFB induced factor homeobox 2 2 2
MIRT635631 PRR15L proline rich 15 like 2 2
MIRT636425 MARCH1 membrane associated ring-CH-type finger 1 2 2
MIRT637295 ACTN2 actinin alpha 2 2 2
MIRT637345 PIGP phosphatidylinositol glycan anchor biosynthesis class P 2 2
MIRT637842 SLC2A9 solute carrier family 2 member 9 2 2
MIRT638327 RCAN1 regulator of calcineurin 1 2 2
MIRT638375 RABL3 RAB, member of RAS oncogene family like 3 2 2
MIRT638751 EPHA4 EPH receptor A4 2 2
MIRT638965 ARHGAP6 Rho GTPase activating protein 6 2 2
MIRT639094 GLIPR1L2 GLI pathogenesis related 1 like 2 2 2
MIRT639172 CEP70 centrosomal protein 70 2 2
MIRT639254 SLC38A1 solute carrier family 38 member 1 2 4
MIRT639368 ZCCHC24 zinc finger CCHC-type containing 24 2 4
MIRT639504 CACNA1G calcium voltage-gated channel subunit alpha1 G 2 2
MIRT639644 WHAMM WAS protein homolog associated with actin, golgi membranes and microtubules 2 2
MIRT640486 EXOC5 exocyst complex component 5 2 2
MIRT641424 SCUBE3 signal peptide, CUB domain and EGF like domain containing 3 2 2
MIRT641550 LIPG lipase G, endothelial type 2 2
MIRT642180 TOR1AIP1 torsin 1A interacting protein 1 2 2
MIRT642656 RGS6 regulator of G protein signaling 6 2 2
MIRT642873 SAMD1 sterile alpha motif domain containing 1 2 2
MIRT643355 TRIM10 tripartite motif containing 10 2 2
MIRT643531 DNTTIP2 deoxynucleotidyltransferase terminal interacting protein 2 2 2
MIRT643998 PPP1R3G protein phosphatase 1 regulatory subunit 3G 2 2
MIRT644105 PHLPP1 PH domain and leucine rich repeat protein phosphatase 1 2 2
MIRT644421 VDR vitamin D receptor 2 2
MIRT644481 SLFN12 schlafen family member 12 2 2
MIRT644573 SPOP speckle type BTB/POZ protein 2 2
MIRT645354 SPNS1 sphingolipid transporter 1 (putative) 2 2
MIRT645383 FBLIM1 filamin binding LIM protein 1 2 2
MIRT645758 SURF6 surfeit 6 2 2
MIRT646060 VANGL2 VANGL planar cell polarity protein 2 2 2
MIRT646194 DUSP10 dual specificity phosphatase 10 2 2
MIRT647915 RGS5 regulator of G protein signaling 5 2 2
MIRT649216 AMMECR1L AMMECR1 like 2 2
MIRT649265 C17orf64 chromosome 17 open reading frame 64 2 2
MIRT649522 GTF3C3 general transcription factor IIIC subunit 3 2 2
MIRT649605 ITPKC inositol-trisphosphate 3-kinase C 2 2
MIRT650392 ORMDL2 ORMDL sphingolipid biosynthesis regulator 2 2 2
MIRT650835 SEMA4G semaphorin 4G 2 2
MIRT651273 ZDHHC5 zinc finger DHHC-type containing 5 2 2
MIRT651674 VPS37A VPS37A, ESCRT-I subunit 2 2
MIRT651763 VASP vasodilator stimulated phosphoprotein 2 2
MIRT652250 TPD52L3 tumor protein D52 like 3 2 2
MIRT652277 TOM1L2 target of myb1 like 2 membrane trafficking protein 2 2
MIRT652316 TNFSF15 TNF superfamily member 15 2 2
MIRT652342 TMOD3 tropomodulin 3 2 2
MIRT652373 TMEM57 transmembrane protein 57 2 2
MIRT652438 TMEM236 transmembrane protein 236 2 2
MIRT652723 TGFB2 transforming growth factor beta 2 2 2
MIRT652752 TET3 tet methylcytosine dioxygenase 3 2 2
MIRT653310 SMOC1 SPARC related modular calcium binding 1 2 2
MIRT653327 SMIM18 small integral membrane protein 18 2 2
MIRT653406 SLC7A2 solute carrier family 7 member 2 2 2
MIRT653512 SLC41A1 solute carrier family 41 member 1 2 2
MIRT653912 SERPINC1 serpin family C member 1 2 2
MIRT654111 RPS6KA5 ribosomal protein S6 kinase A5 2 2
MIRT654153 RORB RAR related orphan receptor B 2 2
MIRT654548 RAB14 RAB14, member RAS oncogene family 2 2
MIRT654920 POLR3D RNA polymerase III subunit D 2 2
MIRT655169 PHF19 PHD finger protein 19 2 2
MIRT655412 PAN2 PAN2 poly(A) specific ribonuclease subunit 2 2
MIRT655784 NOVA2 NOVA alternative splicing regulator 2 2 2
MIRT655836 NGDN neuroguidin 2 2
MIRT656079 MTA3 metastasis associated 1 family member 3 2 2
MIRT656404 MCTP1 multiple C2 and transmembrane domain containing 1 2 2
MIRT656720 LMLN leishmanolysin like peptidase 2 2
MIRT656774 LARP1 La ribonucleoprotein domain family member 1 2 2
MIRT656922 KIAA1462 junctional cadherin 5 associated 2 2
MIRT657004 KCNMB4 potassium calcium-activated channel subfamily M regulatory beta subunit 4 2 2
MIRT657477 HCAR2 hydroxycarboxylic acid receptor 2 2 2
MIRT657539 GSTO2 glutathione S-transferase omega 2 2 2
MIRT657911 GCC1 GRIP and coiled-coil domain containing 1 2 2
MIRT658478 EXOC8 exocyst complex component 8 2 2
MIRT658612 ENPP5 ectonucleotide pyrophosphatase/phosphodiesterase 5 (putative) 2 2
MIRT658823 SRCAP Snf2 related CREBBP activator protein 2 2
MIRT658965 DNAJB5 DnaJ heat shock protein family (Hsp40) member B5 2 4
MIRT659706 CCDC93 coiled-coil domain containing 93 2 2
MIRT660034 C15orf61 chromosome 15 open reading frame 61 2 2
MIRT660108 BTBD3 BTB domain containing 3 2 2
MIRT660697 AMOTL2 angiomotin like 2 2 2
MIRT660763 ALDH6A1 aldehyde dehydrogenase 6 family member A1 2 2
MIRT660884 ADCYAP1R1 ADCYAP receptor type I 2 2
MIRT660956 ABL2 ABL proto-oncogene 2, non-receptor tyrosine kinase 2 2
MIRT661217 SCIMP SLP adaptor and CSK interacting membrane protein 2 2
MIRT661596 C2orf15 chromosome 2 open reading frame 15 2 2
MIRT661624 UGT2B28 UDP glucuronosyltransferase family 2 member B28 2 2
MIRT662430 EID2 EP300 interacting inhibitor of differentiation 2 2 2
MIRT664816 NOX5 NADPH oxidase 5 2 2
MIRT665548 UCHL5 ubiquitin C-terminal hydrolase L5 2 2
MIRT665815 TMEM161B transmembrane protein 161B 2 2
MIRT666668 RBM23 RNA binding motif protein 23 2 2
MIRT667995 HCFC2 host cell factor C2 2 2
MIRT668064 GPR180 G protein-coupled receptor 180 2 2
MIRT669056 CELSR3 cadherin EGF LAG seven-pass G-type receptor 3 2 2
MIRT669637 ACSBG1 acyl-CoA synthetase bubblegum family member 1 2 2
MIRT699368 SLC30A6 solute carrier family 30 member 6 2 2
MIRT699882 RUNX1 runt related transcription factor 1 2 2
MIRT703834 ETV3 ETS variant 3 2 2
MIRT708528 ZNF177 zinc finger protein 177 2 2
MIRT709696 DMWD DM1 locus, WD repeat containing 2 2
MIRT710381 PARD6G par-6 family cell polarity regulator gamma 2 2
MIRT710639 GLUL glutamate-ammonia ligase 2 2
MIRT711584 SETD1A SET domain containing 1A 2 2
MIRT713208 FAM13A family with sequence similarity 13 member A 2 2
MIRT714129 IL20RB interleukin 20 receptor subunit beta 2 2
MIRT714204 MRE11A MRE11 homolog, double strand break repair nuclease 2 2
MIRT714733 CCNO cyclin O 2 2
MIRT714761 ZNF462 zinc finger protein 462 2 2
MIRT715624 ZBTB8B zinc finger and BTB domain containing 8B 2 2
MIRT715755 SKA2 spindle and kinetochore associated complex subunit 2 2 2
MIRT716075 RNF150 ring finger protein 150 2 2
MIRT716179 MTRNR2L1 MT-RNR2-like 1 2 2
MIRT717450 RWDD2A RWD domain containing 2A 2 2
MIRT717866 CACNA2D1 calcium voltage-gated channel auxiliary subunit alpha2delta 1 2 2
MIRT720964 ZBTB43 zinc finger and BTB domain containing 43 2 2
MIRT721564 SLC5A12 solute carrier family 5 member 12 2 2
MIRT722348 BAG2 BCL2 associated athanogene 2 2 2
MIRT723235 BTLA B and T lymphocyte associated 2 2
MIRT724018 LMBRD2 LMBR1 domain containing 2 2 2
MIRT724507 KLHL5 kelch like family member 5 2 2
MIRT725478 GPR26 G protein-coupled receptor 26 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-4446 Aed Therapy sensitive High Epilepsy tissue
hsa-mir-4446 Ceritinib 57379345 NSC776422 approved sensitive High Non-Small Cell Lung Cancer cell line (H3122, H2228)
hsa-mir-4446 Androstenedione+Letrozole sensitive cell line (MCF-7)
hsa-mir-4446 Tamoxifen 2733525 NSC180973 approved resistant cell line (MCF7)
hsa-mir-4446 Cisplatin 5460033 NSC119875 approved resistant cell line (BxPC3)
hsa-mir-4446 Ceritinib 57379345 NSC776422 approved sensitive cell line (H3122)
hsa-miR-4446-5p Cisplatin 5460033 NSC119875 approved resistant cell line (A549)
hsa-miR-4446-5p Paclitaxel 36314 NSC125973 approved resistant cell line (A2780)
hsa-miR-4446-5p Neoadjuvant chemotherapy resistant tissue (breast cancer)
hsa-miR-4446-5p Ceritinib 57379345 NSC776422 approved sensitive cell line (H3122)

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