miRTarBase - #MIRT621458


—
pre-miRNA Information
pre-miRNA hsa-mir-6767   
Genomic Coordinates chr16: 2445392 - 2445457
Description Homo sapiens miR-6767 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-6767-3p
Sequence 45| CCACGUGCUUCUCUUUCCGCAG |66
Evidence Experimental
Experiments Meta-analysis
DRVs in miRNA
Mutant ID Mutant Position Mutant Source
722753 18 ClinVar
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1357663597 2 dbSNP
rs1195774168 3 dbSNP
rs1271299527 4 dbSNP
rs368889723 5 dbSNP
rs373559092 15 dbSNP
rs376429792 18 dbSNP
rs189194179 19 dbSNP
rs1189692059 22 dbSNP
Putative Targets

Gene Information
Gene Symbol STX1B   
Synonyms GEFSP9, STX1B1, STX1B2
Description syntaxin 1B
Transcript NM_052874   
Expression
Putative miRNA Targets on STX1B
3'UTR of STX1B
(miRNA target sites are highlighted)		 
>STX1B|NM_052874|3'UTR
   1 GCCCCCCCCACCCTTCTCTCTCCCAGACCCTTCCCCCACCACATCGGGAGCAATACCCCCACCACCCCTTTCACTCCATC
  81 CCCTGCTCCAGGCTCACTCCCAAAACAGACCCAGGCAGCCCCACCCCCACGGCAGACCCTGGTGTCCCTGGACCTCACCG
 161 GGCCATGGACCCCCCCCCCGTCCCCGCACGTAGATCGCAGCAGGCGTGATTACACATGCACACCAACATGCATGCCGCCG
 241 GCACATGCTCGAGACGTGTGGACACCCCAGCGTGCGTGTGCGTGTGATGTGTGTGATGCACCAGAGCACCCCCTCCACCC
 321 CCACCTTGGGTGTGTGTGCGTGGTCTGAGCTTCCCCCTTCACCGGGGCTGTTGTGTAGACTGCAGCCAAGTGTAACACAG
 401 CAGTCCATCACGCCCTCTCTGTCCTCTGTGAACAGTGTGTGTGCGTGCGTGAGACCACAGATCTGTGGACACACCATTTG
 481 TGTACGTGGAATTTTGTGTTTCAGTGTTTGAACCTAATGCAACAGCAACAAAGCCACTGATACCTGAGCCCTTTGTGTCT
 561 GCTACAAACCAGGCAGGTGGTGTGTGTGGACTCACACTCACATTCTCAGAGGATCCAGGGAGGCCCAGGTACACACAGGC
 641 CATGGCAGACACCCCATGTCTTTGTTACCCCAGGGGCTGTGGCATGTCCCAGGAGGGTGTGCATGTGTGTGTGTGTGTGT
 721 GTGTGTGTGTCCAGGATGTGCCTGAAGTATTGATAGGTCTTCTCAGATAGAGCCCTCCACACTGTGGACTGGACACCTGT
 801 TTTGGGAGGGCACAGAAATGTGTATTTCTTGCTACCTAGAATGCAGCTGTGTGTGTGTGGCGTGCGTGTGTATGCACGTG
 881 TGTGTGTGTGTTAGGGGCTCTCTACATGGTGTGCTTTTTAATTTTTTTTTGTTTTTTGTTTTTTGTTTTTTTCGAGACGG
 961 AGTCTTGCTCTGTCACCCAGGCTGGAGTGCAGTGGCGCAATCTCAGCTCACTGCAACCTGTGCCTCCCTGACGCAAGCGA
1041 TTCTCATGCCTCAGCCTCCCAAGTAGCTGGGACTACAGGCGCCTGCCACCACGCCTGGCTAATTTTAGAATTTTAGTAGA
1121 GATGAGGTTTTGACATGTTGGCCAGGCTGGTCTCGAACTCCTGACCTCAGGTGATCCGCCCACTTTGGCCTCCCTAAGTG
1201 CTGGCATTACAGGCCTGAGCCACCACGCCTGGCCTACATGATGTGTTTCTGTCCTGCCTGACCTACATGGTGTGTTTCTG
1281 CCCTGCGTATTACACACACACACACACACGTGCGTGCACACACACTTCTAAGGACGTGGCCCCATCTGGCTTTGTCTCTC
1361 CAGTTGTCCTTGCCCTGCCCCCCTCCCCAGAGGTGCTGCCCAGTGCTGGTGTGGCCACACACGGCTACATCATTGTGCAG
1441 GCAGAGCTCCCTGCCTGCCCAGCCTCAGGGCTCTGCATGCTCACACCTAGATCCTCATCTTCCTCCATGTCTCTGCCCAG
1521 CATAGCCCCGAGCCCCTGGAAGCTGGTACCCCTCAGTGTGCTCACACGTGGCAAGGCCGAGGTGGCCCCAGGCAGGGGCC
1601 ATACCAGGCACAAACCATGCACGCTGGCATGGGTGCGGGGATCACACGAATGCCTCCTGGAAGGAAAGGGCTACTTGTAG
1681 GAATGTTACTGATGAGGCAAGATGCCAAGGACTTCCCTGCAGGGATCAAAGATCAGGACACGACCCCTTCCTCACACACC
1761 CACCTCAGACCTGGGAGAGGACTGTGTGTCCCCCACTGCCCCATCGGATGCTCTGGGCTCTGCCTCAGGGAACTCGGGTT
1841 TGGGGAAATGTCTATTTCAGAAGTACTGGAGTGGCCAGTGTGGCAGTGGCCACTCAGGGTGGGCTGGGTCCTGAGACCCA
1921 TCCCCGACACCTCTCCTGCTGAACCCTCAGGCTGCTCCCCACACCAGGGTGTGACTGAGGGGTACACAGGCCTGGATTTC
2001 TGGTGTGAGGAAGGGGCTAGCACCTCCCCTGTTGTGTAGCCAGCACAGGCACAATTTGTGGGTTTGGTGGCAGGTAGGTG
2081 GTGCGTGGGAGAAAGGACAGTGTTAGAGGTCCCCACTCCGTGGTCTAGGATCATGAAAGGTGAACACACAAGTACACAAA
2161 TGTGCCATGCCCTGGCATGGGGCTTATGTGTGCACAGGCAAGGCACTCGGTGTGTGTGTGCGGACCCCAGGGTCCCAGGT
2241 CATGTGAAGCGTACGTGTGTGTGCATTGTATGTGTGTGTACATTGTGTGTGCATTGTGTGTGCATGTGGCCAAACAGATG
2321 TGACCTCCCAGAACACAGTACCCCTCCACCTCTACCCGAGCTCAGACAGCCGAGCTCTCCCTTGTCCTGTGTGTGTGTCA
2401 GTGTGGCCACGTGCGTAACCCCAGGTGGGCTGTCCTGAGCTGGGGGCCTGCCTGTCCCTTCCCAGAACGCCCCTCTGCAG
2481 GACAGGAAGTCTGCCCCAAGTCTGGCCACGGCCCTCCTGCTCCCATCTCGGGCTGCTTGGGAGACATCAGAGCAGGCCCC
2561 AGCCCCCAGTCCCCTCTTCCGGCCGCCTGGACAGGACCCCCATTCAGCCCAGGTGTTTCCGGAAGTCCCACGGCCTTGGG
2641 GCCACAGGAGAAGGGTTGAAGCGTGGCTGGGGCACCACTCCCCCCACCTGGAGTGGCATTGGGCCCACAGCTGCCCATCT
2721 CTGGGCCTCAGGTGGACCAGGGGATCTCTAAGGGTCTGCTGTGCCCTTTCTATGCGTCCTCCACATCCTATGATGTGCCT
2801 GCTTGTTGGCTGCTGTCTGTGTGCGTCCTGGCATGTTGTCTGGAGGCTGGTGTCTTTTGCATGTTCTTGGACAAATGTGT
2881 GCTACCTGCCCAGGCGCCTGCAACCATTGAGCCCACATGTGCCCCACGTGTGCCCTGCGGGTGGTCCCGGGCCTGGCCAG
2961 GGCTCAGTGCTCCTCTTCCCCCTCCTCCCTGTTCCCACCCCTCATGAAGCACACTGCGTGTCCATCCCATGTACCCGTGG
3041 GTCGACGCACGCTCTTGCCACGCCCTGAGCGTGTACACATGATGTGTTCTATGCATTCACCCTGCCCCCCAGCCCGCCCT
3121 GCAGAGGACAAGATGGGTGGCCCCGGCTCCCTTTCCCCTAACCGCCCCTGCCCGCTGTGCAGCCGTGTGCGTTGGCGTGT
3201 GTTTCTGTGTCACTGGCGTGTCACGTGATGTAGCCGTGTTTGCTGACATGAGCCCCTGCCCCCTTCTCTGTTTCTCCGTT
3281 GGTTTCTAGAGCTCTCTCCCTCCCCTTCTCAGAGGGGACAGGACTCCTGGGGCCTGGCTGGGGCCCAGAGCCAGGCCGCC
3361 CTCTCCTGTTAGCCCTCAGAGTCCCATTTCTGTTAGCCCTCAGAGTCCCATTTCTATTGGTGACCAACTTGCAAATGGAT
3441 AAAACACAGGAAAATCCTGCCCCCCCCTTCCTCCCTGCATGTCCTGTCCCCAGAGCCCCCCACCCCACCCTGGGCCAGGT
3521 CAGGCCCTGTGGGACGGGAGAAATAGCAACCAATCCAACAGCGGGAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' gaCGC-CUUUCUC-UUCGUGCACc 5'
            ||| | : | | | ||||||| 
Target 5' tgGCGTGCGTGTGTATGCACGTGt 3'
 858 - 881 148.00 -14.30
2 
miRNA  3' gacGCCUUUCUCUUCGUGCACc 5'
             | |:|:|: : |||:||| 
Target 5' tccCAGGAGGGTGTGCATGTGt 3'
 687 - 708 139.00 -16.10
3 
miRNA  3' gacgccuUUCUCUU--CGUGCACc 5'
                 | | |||  |:||||| 
Target 5' ccaggtcATGTGAAGCGTACGTGt 3'
 2235 - 2258 133.00 -12.70
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
1033021 4 ClinVar
1033022 9 ClinVar
1200110 172 ClinVar
1204794 174 ClinVar
COSN30550385 1 COSMIC
COSN31527287 1 COSMIC
COSN28840315 2 COSMIC
COSN1185326 4 COSMIC
COSN13666990 10 COSMIC
COSN30448941 12 COSMIC
COSN30114130 13 COSMIC
COSN24313964 18 COSMIC
COSN30183791 18 COSMIC
COSN30487261 22 COSMIC
COSN30149261 67 COSMIC
COSN30532166 91 COSMIC
COSN31489494 95 COSMIC
COSN27379252 120 COSMIC
COSN20112838 170 COSMIC
COSN25987082 472 COSMIC
COSN8497701 529 COSMIC
COSN27439176 703 COSMIC
COSN17797414 1105 COSMIC
COSN31588888 1286 COSMIC
COSN18723669 1291 COSMIC
COSN20112833 1309 COSMIC
COSN31596420 1320 COSMIC
COSN29883765 1322 COSMIC
COSN31488890 1466 COSMIC
COSN20945414 1487 COSMIC
COSN8601191 1546 COSMIC
COSN30543044 1551 COSMIC
COSN30175911 1561 COSMIC
COSN26679490 1567 COSMIC
COSN30159310 1773 COSMIC
COSN23346294 1841 COSMIC
COSN20256800 1925 COSMIC
COSN1697180 2038 COSMIC
COSN7304306 2317 COSMIC
COSN8231613 2369 COSMIC
COSN17075980 2529 COSMIC
COSN1185323 2632 COSMIC
COSN23549491 2972 COSMIC
COSN5858510 3197 COSMIC
COSN20112821 3366 COSMIC
rs8060857 1422 GWAS
rs8062719 1478 GWAS
rs13708 3333 GWAS
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1186028301 1 dbSNP
rs745345895 2 dbSNP
rs200589485 3 dbSNP
rs749087140 4 dbSNP
rs777541659 5 dbSNP
rs373729674 6 dbSNP
rs748011467 7 dbSNP
rs1359608746 8 dbSNP
rs78690970 9 dbSNP
rs750392809 10 dbSNP
rs765037903 10 dbSNP
rs866490289 10 dbSNP
rs1380503615 14 dbSNP
rs751637086 14 dbSNP
rs780434298 21 dbSNP
rs371648235 22 dbSNP
rs1007301455 25 dbSNP
rs1432586437 27 dbSNP
rs750882026 28 dbSNP
rs1161840222 35 dbSNP
rs1375134747 36 dbSNP
rs1424243418 37 dbSNP
rs1314892413 38 dbSNP
rs1386013159 40 dbSNP
rs113816974 45 dbSNP
rs754338052 46 dbSNP
rs1261593249 48 dbSNP
rs764618317 49 dbSNP
rs1214483011 52 dbSNP
rs1326414135 61 dbSNP
rs1284482090 65 dbSNP
rs1004867528 68 dbSNP
rs1346765626 73 dbSNP
rs1208310098 76 dbSNP
rs906468962 81 dbSNP
rs1281796189 82 dbSNP
rs540375034 90 dbSNP
rs1294750756 109 dbSNP
rs1485717378 110 dbSNP
rs1233586465 117 dbSNP
rs1354425146 118 dbSNP
rs1231166335 119 dbSNP
rs1310364452 119 dbSNP
rs867610762 120 dbSNP
rs1362603097 122 dbSNP
rs1177606749 123 dbSNP
rs781138086 123 dbSNP
rs1288178779 124 dbSNP
rs1456785002 126 dbSNP
rs11269803 128 dbSNP
rs1306189430 128 dbSNP
rs55966700 128 dbSNP
rs866638238 128 dbSNP
rs866350414 129 dbSNP
rs1356832698 130 dbSNP
rs1167171712 131 dbSNP
rs1303071844 134 dbSNP
rs1462222631 136 dbSNP
rs1368080769 137 dbSNP
rs1231543746 151 dbSNP
rs1185928347 157 dbSNP
rs1194803954 159 dbSNP
rs1430613010 160 dbSNP
rs1439538730 161 dbSNP
rs1263081531 169 dbSNP
rs1188413623 170 dbSNP
rs1395980827 171 dbSNP
rs1491109683 171 dbSNP
rs201290311 172 dbSNP
rs959155695 172 dbSNP
rs1463170142 173 dbSNP
rs191289798 174 dbSNP
rs927537590 174 dbSNP
rs1009898746 175 dbSNP
rs1019901937 175 dbSNP
rs1182890464 176 dbSNP
rs1475789166 176 dbSNP
rs1355266947 177 dbSNP
rs957101675 177 dbSNP
rs1032752581 178 dbSNP
rs1166169734 178 dbSNP
rs767717161 179 dbSNP
rs995995925 179 dbSNP
rs1265768376 180 dbSNP
rs1488653997 180 dbSNP
rs1491527918 180 dbSNP
rs56353515 180 dbSNP
rs67009097 180 dbSNP
rs869237453 180 dbSNP
rs1187356518 181 dbSNP
rs1229383290 181 dbSNP
rs900351786 182 dbSNP
rs1189313831 183 dbSNP
rs555016120 185 dbSNP
rs1326740170 186 dbSNP
rs1156435367 188 dbSNP
rs1386770789 189 dbSNP
rs1294793605 190 dbSNP
rs1419741312 190 dbSNP
rs947948369 196 dbSNP
rs1359813749 197 dbSNP
rs1416467978 203 dbSNP
rs916416508 221 dbSNP
rs1334932579 223 dbSNP
rs1053518342 227 dbSNP
rs560600993 228 dbSNP
rs936460433 231 dbSNP
rs923713178 236 dbSNP
rs543519244 237 dbSNP
rs377186227 239 dbSNP
rs1201470698 240 dbSNP
rs1250512434 246 dbSNP
rs1197440086 247 dbSNP
rs536619256 250 dbSNP
rs898566895 251 dbSNP
rs978185241 256 dbSNP
rs1463856466 264 dbSNP
rs138046858 271 dbSNP
rs937499633 272 dbSNP
rs1303352740 275 dbSNP
rs912185435 276 dbSNP
rs927463578 280 dbSNP
rs557352404 281 dbSNP
rs558153632 282 dbSNP
rs1233763540 288 dbSNP
rs1029198133 298 dbSNP
rs1255420047 309 dbSNP
rs1350130972 310 dbSNP
rs1234141484 312 dbSNP
rs1251215444 313 dbSNP
rs913512056 314 dbSNP
rs988424217 314 dbSNP
rs1193744155 318 dbSNP
rs1239098641 321 dbSNP
rs1468328801 322 dbSNP
rs957048385 325 dbSNP
rs539260446 331 dbSNP
rs1450499347 336 dbSNP
rs994998990 339 dbSNP
rs903686226 340 dbSNP
rs1014996520 343 dbSNP
rs1032699990 346 dbSNP
rs1264834867 350 dbSNP
rs1005346757 354 dbSNP
rs1197125994 356 dbSNP
rs1439974588 358 dbSNP
rs777854567 362 dbSNP
rs868224526 363 dbSNP
rs571744622 364 dbSNP
rs1294886113 372 dbSNP
rs1273724971 378 dbSNP
rs1305841579 380 dbSNP
rs1225856378 383 dbSNP
rs964542609 384 dbSNP
rs1334604672 390 dbSNP
rs1212250972 396 dbSNP
rs187708334 401 dbSNP
rs1046341219 402 dbSNP
rs528182341 406 dbSNP
rs867385425 411 dbSNP
rs766281947 412 dbSNP
rs1191440460 417 dbSNP
rs1019185590 421 dbSNP
rs111945819 439 dbSNP
rs1330526300 444 dbSNP
rs369014905 445 dbSNP
rs545728705 449 dbSNP
rs936489960 454 dbSNP
rs902292714 461 dbSNP
rs1042154482 466 dbSNP
rs1397443767 474 dbSNP
rs1437372783 479 dbSNP
rs1288523342 485 dbSNP
rs943763757 486 dbSNP
rs1384061283 493 dbSNP
rs1279351384 502 dbSNP
rs898514536 503 dbSNP
rs760784669 508 dbSNP
rs1232017654 520 dbSNP
rs1275392589 524 dbSNP
rs79815043 541 dbSNP
rs1221777477 549 dbSNP
rs912234338 551 dbSNP
rs985114765 560 dbSNP
rs937418033 565 dbSNP
rs1397464113 569 dbSNP
rs1195265045 572 dbSNP
rs932259126 579 dbSNP
rs1477418487 587 dbSNP
rs1185753451 598 dbSNP
rs773237541 607 dbSNP
rs1405798491 612 dbSNP
rs1158648226 622 dbSNP
rs772305624 629 dbSNP
rs572727225 633 dbSNP
rs1343693021 635 dbSNP
rs1183354638 645 dbSNP
rs1421565086 653 dbSNP
rs548598317 655 dbSNP
rs1298832800 660 dbSNP
rs950248698 670 dbSNP
rs150235765 675 dbSNP
rs1286485175 678 dbSNP
rs533352411 680 dbSNP
rs989041063 682 dbSNP
rs1223647287 683 dbSNP
rs1015482756 697 dbSNP
rs983558150 703 dbSNP
rs755299602 704 dbSNP
rs925617587 706 dbSNP
rs1286057608 711 dbSNP
rs55683703 714 dbSNP
rs386384606 721 dbSNP
rs1485066151 724 dbSNP
rs974469157 726 dbSNP
rs762358163 728 dbSNP
rs1491174069 730 dbSNP
rs112607901 731 dbSNP
rs1239204886 731 dbSNP
rs1259589412 731 dbSNP
rs1405545737 731 dbSNP
rs1472985088 731 dbSNP
rs1491574214 731 dbSNP
rs397779429 731 dbSNP
rs1296762773 732 dbSNP
rs879563314 745 dbSNP
rs964812366 748 dbSNP
rs1309605190 750 dbSNP
rs1346516187 758 dbSNP
rs1018718953 772 dbSNP
rs971185188 773 dbSNP
rs1273196824 774 dbSNP
rs1280621142 780 dbSNP
rs1442880890 785 dbSNP
rs1203767186 794 dbSNP
rs1230894433 803 dbSNP
rs1024966425 806 dbSNP
rs1012200381 814 dbSNP
rs895090867 818 dbSNP
rs1032209792 839 dbSNP
rs1001164785 840 dbSNP
rs902364582 854 dbSNP
rs369301553 860 dbSNP
rs1026210118 861 dbSNP
rs1408393884 862 dbSNP
rs1042576214 865 dbSNP
rs142823921 866 dbSNP
rs1409857522 868 dbSNP
rs1327442654 872 dbSNP
rs890875186 878 dbSNP
rs1448068917 885 dbSNP
rs899117418 886 dbSNP
rs1369850911 892 dbSNP
rs373633065 892 dbSNP
rs753147768 892 dbSNP
rs761606273 892 dbSNP
rs1345110138 894 dbSNP
rs1049444887 899 dbSNP
rs1256148050 900 dbSNP
rs765717567 902 dbSNP
rs761885408 903 dbSNP
rs1319735483 904 dbSNP
rs1414472317 919 dbSNP
rs1252591372 924 dbSNP
rs905931145 925 dbSNP
rs1159842347 929 dbSNP
rs1470157677 931 dbSNP
rs1475133991 933 dbSNP
rs1166658120 934 dbSNP
rs1426458585 936 dbSNP
rs1466447686 937 dbSNP
rs1164597296 938 dbSNP
rs1410812152 938 dbSNP
rs1045829426 940 dbSNP
rs1331163030 942 dbSNP
rs1276195884 945 dbSNP
rs1476073992 945 dbSNP
rs1258035159 946 dbSNP
rs932290215 950 dbSNP
rs1219201455 952 dbSNP
rs770953107 952 dbSNP
rs1286199242 953 dbSNP
rs1354001833 953 dbSNP
rs556703829 953 dbSNP
rs919563081 958 dbSNP
rs774786722 959 dbSNP
rs1191182710 966 dbSNP
rs1265455284 968 dbSNP
rs563283667 984 dbSNP
rs768972293 992 dbSNP
rs1187865342 994 dbSNP
rs984018906 996 dbSNP
rs970877601 997 dbSNP
rs1024997269 1000 dbSNP
rs990810135 1010 dbSNP
rs1164636599 1012 dbSNP
rs936249198 1013 dbSNP
rs959381096 1032 dbSNP
rs1032283192 1037 dbSNP
rs1000794680 1038 dbSNP
rs902396049 1039 dbSNP
rs1039090681 1044 dbSNP
rs1338472885 1046 dbSNP
rs1246768139 1049 dbSNP
rs1284977549 1050 dbSNP
rs1350165142 1058 dbSNP
rs1339252476 1060 dbSNP
rs1288164166 1062 dbSNP
rs1488663339 1067 dbSNP
rs1417644645 1071 dbSNP
rs1188716925 1073 dbSNP
rs943076948 1077 dbSNP
rs551386189 1080 dbSNP
rs1020824292 1081 dbSNP
rs749654631 1092 dbSNP
rs987236033 1093 dbSNP
rs1381565677 1094 dbSNP
rs1419841390 1098 dbSNP
rs1457317146 1107 dbSNP
rs1387205661 1110 dbSNP
rs1008458082 1114 dbSNP
rs1400041063 1115 dbSNP
rs533210016 1124 dbSNP
rs1462751610 1128 dbSNP
rs563055951 1134 dbSNP
rs1049515431 1136 dbSNP
rs369525965 1141 dbSNP
rs780751363 1150 dbSNP
rs1181088601 1154 dbSNP
rs996574774 1159 dbSNP
rs1471664694 1165 dbSNP
rs919098548 1168 dbSNP
rs1250174635 1173 dbSNP
rs1243779102 1177 dbSNP
rs554167083 1178 dbSNP
rs1381856108 1196 dbSNP
rs973274439 1196 dbSNP
rs1464374290 1204 dbSNP
rs963274337 1205 dbSNP
rs1267657692 1211 dbSNP
rs1033632932 1214 dbSNP
rs1001913141 1219 dbSNP
rs1467460342 1219 dbSNP
rs1395483980 1223 dbSNP
rs898166013 1226 dbSNP
rs770389821 1233 dbSNP
rs1206864752 1238 dbSNP
rs1337292486 1242 dbSNP
rs1314031441 1245 dbSNP
rs746546397 1269 dbSNP
rs942331353 1270 dbSNP
rs1290804403 1272 dbSNP
rs908118778 1280 dbSNP
rs1047916701 1281 dbSNP
rs1251300589 1282 dbSNP
rs766816183 1286 dbSNP
rs1239193875 1287 dbSNP
rs1024771962 1291 dbSNP
rs1190276490 1293 dbSNP
rs918059040 1293 dbSNP
rs1014300541 1300 dbSNP
rs891914606 1305 dbSNP
rs1053213283 1307 dbSNP
rs370328956 1309 dbSNP
rs59449462 1309 dbSNP
rs1172494065 1310 dbSNP
rs1491067902 1310 dbSNP
rs386790281 1310 dbSNP
rs55969374 1310 dbSNP
rs77399118 1310 dbSNP
rs72535041 1311 dbSNP
rs1339026898 1313 dbSNP
rs1221035392 1314 dbSNP
rs1000342093 1317 dbSNP
rs759947784 1322 dbSNP
rs904758546 1326 dbSNP
rs1220353659 1335 dbSNP
rs1318003897 1336 dbSNP
rs1442405280 1340 dbSNP
rs1489156158 1344 dbSNP
rs1209962440 1347 dbSNP
rs1350141158 1354 dbSNP
rs1261869428 1361 dbSNP
rs559296458 1364 dbSNP
rs1195766458 1368 dbSNP
rs1403405115 1373 dbSNP
rs1424005657 1376 dbSNP
rs541184575 1378 dbSNP
rs1162942429 1381 dbSNP
rs1351879412 1382 dbSNP
rs1458456533 1384 dbSNP
rs1297610573 1386 dbSNP
rs12933960 1390 dbSNP
rs12933959 1392 dbSNP
rs1358706463 1393 dbSNP
rs1168981738 1395 dbSNP
rs943003732 1400 dbSNP
rs12933954 1403 dbSNP
rs1355216374 1405 dbSNP
rs911561630 1409 dbSNP
rs12934415 1410 dbSNP
rs12934413 1412 dbSNP
rs1310105870 1418 dbSNP
rs573395093 1421 dbSNP
rs8060857 1422 dbSNP
rs979837343 1423 dbSNP
rs1487032761 1424 dbSNP
rs1186783834 1425 dbSNP
rs12933823 1444 dbSNP
rs929039164 1447 dbSNP
rs919034948 1449 dbSNP
rs1415731179 1450 dbSNP
rs12932701 1455 dbSNP
rs973221694 1460 dbSNP
rs966673382 1467 dbSNP
rs1158287268 1470 dbSNP
rs12932685 1471 dbSNP
rs1021275654 1472 dbSNP
rs543076340 1473 dbSNP
rs955210394 1477 dbSNP
rs8062719 1478 dbSNP
rs1359142483 1479 dbSNP
rs12932678 1480 dbSNP
rs1446487636 1487 dbSNP
rs141054290 1494 dbSNP
rs12934371 1508 dbSNP
rs1380361632 1515 dbSNP
rs1228483276 1518 dbSNP
rs538965495 1519 dbSNP
rs1308158925 1522 dbSNP
rs1229559248 1529 dbSNP
rs1241738128 1530 dbSNP
rs1286624128 1533 dbSNP
rs12932544 1536 dbSNP
rs1465006133 1545 dbSNP
rs12932538 1552 dbSNP
rs970429197 1561 dbSNP
rs578165969 1564 dbSNP
rs867722175 1567 dbSNP
rs1292419301 1568 dbSNP
rs1004269163 1578 dbSNP
rs1236620303 1579 dbSNP
rs1433931001 1593 dbSNP
rs1159275053 1598 dbSNP
rs1355885769 1602 dbSNP
rs1308456999 1622 dbSNP
rs1428816065 1623 dbSNP
rs550352739 1628 dbSNP
rs886722393 1629 dbSNP
rs1178891042 1631 dbSNP
rs1014248126 1633 dbSNP
rs553313826 1636 dbSNP
rs866098050 1637 dbSNP
rs1330233099 1639 dbSNP
rs1448563297 1647 dbSNP
rs778622874 1648 dbSNP
rs1343689960 1651 dbSNP
rs1217393172 1653 dbSNP
rs1056395970 1656 dbSNP
rs1175367639 1660 dbSNP
rs1434997600 1663 dbSNP
rs918090198 1665 dbSNP
rs754787758 1667 dbSNP
rs938133529 1673 dbSNP
rs1190682295 1679 dbSNP
rs151103436 1695 dbSNP
rs1197827888 1701 dbSNP
rs1255941928 1704 dbSNP
rs925339667 1722 dbSNP
rs753599429 1724 dbSNP
rs1031744050 1726 dbSNP
rs1246146682 1730 dbSNP
rs979483931 1736 dbSNP
rs967125018 1741 dbSNP
rs766335154 1742 dbSNP
rs760557795 1746 dbSNP
rs1426534703 1763 dbSNP
rs1206353991 1770 dbSNP
rs1465414072 1771 dbSNP
rs755755110 1772 dbSNP
rs1273121463 1774 dbSNP
rs987125518 1775 dbSNP
rs955241029 1784 dbSNP
rs1028193707 1786 dbSNP
rs1460215496 1788 dbSNP
rs1349588404 1789 dbSNP
rs1166144077 1793 dbSNP
rs1433721425 1794 dbSNP
rs1276517207 1798 dbSNP
rs1346013494 1805 dbSNP
rs1007816337 1806 dbSNP
rs1275999596 1818 dbSNP
rs1319757772 1820 dbSNP
rs996679383 1823 dbSNP
rs567057533 1831 dbSNP
rs962478370 1832 dbSNP
rs1216945237 1835 dbSNP
rs1051412369 1836 dbSNP
rs1477758900 1838 dbSNP
rs1211489823 1850 dbSNP
rs928986886 1854 dbSNP
rs1478391413 1867 dbSNP
rs1168104974 1874 dbSNP
rs1389621911 1878 dbSNP
rs1403265197 1893 dbSNP
rs548659315 1894 dbSNP
rs1365661854 1899 dbSNP
rs192489578 1905 dbSNP
rs1276296131 1907 dbSNP
rs1037474716 1913 dbSNP
rs569316018 1915 dbSNP
rs1227941092 1922 dbSNP
rs941820357 1925 dbSNP
rs767432488 1926 dbSNP
rs1230275080 1932 dbSNP
rs1292509274 1945 dbSNP
rs1407625541 1949 dbSNP
rs1488036038 1954 dbSNP
rs1215077209 1957 dbSNP
rs1368411145 1959 dbSNP
rs1266020162 1961 dbSNP
rs1488806466 1966 dbSNP
rs886795183 1969 dbSNP
rs1023936181 1978 dbSNP
rs780732142 1980 dbSNP
rs1466550055 1986 dbSNP
rs761951955 1994 dbSNP
rs551317483 2000 dbSNP
rs1385299592 2012 dbSNP
rs917855863 2016 dbSNP
rs896736161 2020 dbSNP
rs1296235793 2023 dbSNP
rs1406389409 2029 dbSNP
rs533093287 2030 dbSNP
rs1338493466 2031 dbSNP
rs1431469777 2034 dbSNP
rs1450446334 2036 dbSNP
rs1316072478 2046 dbSNP
rs1353032467 2052 dbSNP
rs1414470457 2053 dbSNP
rs1238114882 2056 dbSNP
rs938167828 2068 dbSNP
rs1288279828 2069 dbSNP
rs1351975956 2073 dbSNP
rs117965846 2078 dbSNP
rs1254434059 2079 dbSNP
rs560128143 2084 dbSNP
rs1044215125 2085 dbSNP
rs945441864 2090 dbSNP
rs1243419522 2101 dbSNP
rs1438517609 2115 dbSNP
rs868779389 2119 dbSNP
rs768904492 2120 dbSNP
rs547302283 2127 dbSNP
rs986790266 2128 dbSNP
rs933934041 2140 dbSNP
rs978869170 2145 dbSNP
rs969256394 2155 dbSNP
rs529081141 2156 dbSNP
rs561405177 2160 dbSNP
rs1483890675 2161 dbSNP
rs142978928 2165 dbSNP
rs1376368710 2170 dbSNP
rs1444880845 2177 dbSNP
rs1311468520 2182 dbSNP
rs1336439848 2183 dbSNP
rs1008166966 2185 dbSNP
rs1254831230 2208 dbSNP
rs543139532 2209 dbSNP
rs890702552 2214 dbSNP
rs1207457265 2215 dbSNP
rs369776458 2219 dbSNP
rs1439762061 2221 dbSNP
rs975274341 2221 dbSNP
rs993141663 2221 dbSNP
rs897499235 2222 dbSNP
rs1419220801 2227 dbSNP
rs375864297 2229 dbSNP
rs1198041080 2232 dbSNP
rs575762317 2236 dbSNP
rs1375903419 2243 dbSNP
rs1467538742 2244 dbSNP
rs1176836628 2248 dbSNP
rs539823244 2250 dbSNP
rs563541344 2251 dbSNP
rs1016744955 2254 dbSNP
rs982943987 2255 dbSNP
rs1378379908 2270 dbSNP
rs1397298227 2270 dbSNP
rs1299794890 2274 dbSNP
rs572845024 2274 dbSNP
rs1224702931 2280 dbSNP
rs375698788 2280 dbSNP
rs545351003 2280 dbSNP
rs549305879 2280 dbSNP
rs1316465281 2287 dbSNP
rs1196355297 2291 dbSNP
rs1464620917 2292 dbSNP
rs1390994462 2298 dbSNP
rs1480659082 2300 dbSNP
rs1159993569 2306 dbSNP
rs917803594 2315 dbSNP
rs571441634 2317 dbSNP
rs1200078162 2335 dbSNP
rs934621707 2336 dbSNP
rs924620533 2339 dbSNP
rs979203951 2341 dbSNP
rs1457615007 2357 dbSNP
rs1167373313 2358 dbSNP
rs1291822466 2361 dbSNP
rs1424715918 2372 dbSNP
rs968826942 2381 dbSNP
rs1298184450 2382 dbSNP
rs1338855821 2384 dbSNP
rs188677275 2386 dbSNP
rs1296765326 2388 dbSNP
rs1307674152 2396 dbSNP
rs551253719 2399 dbSNP
rs1024426168 2405 dbSNP
rs1466630705 2408 dbSNP
rs1013875272 2410 dbSNP
rs1207521171 2414 dbSNP
rs954879233 2415 dbSNP
rs1030550215 2417 dbSNP
rs1420003044 2424 dbSNP
rs993758057 2429 dbSNP
rs962323833 2431 dbSNP
rs1274610129 2437 dbSNP
rs1162968604 2444 dbSNP
rs1245250394 2446 dbSNP
rs1015929523 2447 dbSNP
rs763262883 2449 dbSNP
rs1006323099 2451 dbSNP
rs896769114 2452 dbSNP
rs1310293691 2465 dbSNP
rs904926241 2468 dbSNP
rs1365796379 2469 dbSNP
rs1045228654 2470 dbSNP
rs1013395878 2472 dbSNP
rs1033905263 2476 dbSNP
rs1002385308 2480 dbSNP
rs904020732 2488 dbSNP
rs1310218466 2489 dbSNP
rs1360939536 2490 dbSNP
rs879785236 2492 dbSNP
rs1321357243 2495 dbSNP
rs1217873505 2498 dbSNP
rs534953904 2498 dbSNP
rs1242431896 2503 dbSNP
rs1482839841 2507 dbSNP
rs1180335766 2509 dbSNP
rs578209233 2510 dbSNP
rs945486563 2524 dbSNP
rs925240364 2526 dbSNP
rs892548298 2530 dbSNP
rs1458751756 2544 dbSNP
rs1051119245 2550 dbSNP
rs947389989 2553 dbSNP
rs933966781 2557 dbSNP
rs1451923886 2568 dbSNP
rs921237786 2570 dbSNP
rs975346317 2572 dbSNP
rs1452956757 2575 dbSNP
rs1488053643 2575 dbSNP
rs954826040 2579 dbSNP
rs1374037616 2580 dbSNP
rs772947891 2581 dbSNP
rs1284956388 2583 dbSNP
rs941248606 2584 dbSNP
rs865807839 2585 dbSNP
rs1264801486 2595 dbSNP
rs1269036032 2598 dbSNP
rs982629557 2602 dbSNP
rs972266588 2608 dbSNP
rs1471237940 2611 dbSNP
rs951246888 2620 dbSNP
rs1425142262 2621 dbSNP
rs1210124404 2631 dbSNP
rs916983248 2632 dbSNP
rs775953713 2639 dbSNP
rs1469948168 2643 dbSNP
rs61738725 2654 dbSNP
rs767782919 2655 dbSNP
rs1342810340 2662 dbSNP
rs771490358 2663 dbSNP
rs1023343894 2666 dbSNP
rs1221611483 2681 dbSNP
rs1296725541 2683 dbSNP
rs770444800 2685 dbSNP
rs896272290 2686 dbSNP
rs1052215933 2687 dbSNP
rs1325599374 2695 dbSNP
rs968321340 2697 dbSNP
rs1387631911 2704 dbSNP
rs999336766 2708 dbSNP
rs1205249930 2717 dbSNP
rs1390253411 2721 dbSNP
rs1246234239 2731 dbSNP
rs1292199680 2733 dbSNP
rs1431963394 2734 dbSNP
rs1022924391 2735 dbSNP
rs903742614 2742 dbSNP
rs1009718873 2747 dbSNP
rs1477739941 2752 dbSNP
rs1169480212 2753 dbSNP
rs1168441769 2758 dbSNP
rs892574408 2762 dbSNP
rs1448189318 2764 dbSNP
rs947373171 2765 dbSNP
rs1198913385 2772 dbSNP
rs1051196110 2774 dbSNP
rs1239586922 2775 dbSNP
rs998247313 2776 dbSNP
rs1268220684 2778 dbSNP
rs899837218 2785 dbSNP
rs1207068828 2790 dbSNP
rs1215386421 2793 dbSNP
rs1483219950 2794 dbSNP
rs746317537 2796 dbSNP
rs1273849314 2800 dbSNP
rs1489897825 2801 dbSNP
rs941311738 2814 dbSNP
rs1347033499 2818 dbSNP
rs1270287255 2819 dbSNP
rs1276730294 2821 dbSNP
rs1234030819 2824 dbSNP
rs777425274 2825 dbSNP
rs910553711 2832 dbSNP
rs1047363523 2833 dbSNP
rs929837499 2838 dbSNP
rs1412438315 2848 dbSNP
rs917055415 2869 dbSNP
rs77218983 2874 dbSNP
rs958413285 2878 dbSNP
rs1428425873 2881 dbSNP
rs1366059903 2890 dbSNP
rs539680226 2891 dbSNP
rs926995928 2894 dbSNP
rs1404950601 2895 dbSNP
rs978448340 2896 dbSNP
rs1465071991 2904 dbSNP
rs374919388 2906 dbSNP
rs1357335640 2907 dbSNP
rs1248331675 2910 dbSNP
rs1375573500 2911 dbSNP
rs1183817835 2912 dbSNP
rs972212527 2915 dbSNP
rs1472708867 2922 dbSNP
rs573893765 2925 dbSNP
rs962216350 2928 dbSNP
rs968728347 2928 dbSNP
rs773725354 2932 dbSNP
rs768710175 2938 dbSNP
rs1385318247 2939 dbSNP
rs1418959566 2946 dbSNP
rs796172929 2948 dbSNP
rs570420970 2949 dbSNP
rs555495914 2953 dbSNP
rs1201141447 2956 dbSNP
rs1344317391 2957 dbSNP
rs960424358 2965 dbSNP
rs1315744332 2972 dbSNP
rs35441006 2972 dbSNP
rs536761653 2973 dbSNP
rs146780994 2976 dbSNP
rs899912237 2978 dbSNP
rs372016422 2979 dbSNP
rs999292676 2981 dbSNP
rs903689332 2982 dbSNP
rs1261694818 2984 dbSNP
rs1459650499 2986 dbSNP
rs551110265 2987 dbSNP
rs1205189716 2995 dbSNP
rs1243206263 3011 dbSNP
rs1440405116 3013 dbSNP
rs34199049 3015 dbSNP
rs1342812732 3017 dbSNP
rs369471915 3018 dbSNP
rs1365516376 3022 dbSNP
rs1394957880 3024 dbSNP
rs1470487045 3027 dbSNP
rs1005534494 3030 dbSNP
rs888414714 3031 dbSNP
rs569060784 3036 dbSNP
rs929841725 3037 dbSNP
rs889749306 3043 dbSNP
rs917086386 3044 dbSNP
rs1056886251 3046 dbSNP
rs4889605 3047 dbSNP
rs1389795318 3050 dbSNP
rs927026041 3052 dbSNP
rs933337643 3053 dbSNP
rs1233164337 3054 dbSNP
rs901899291 3057 dbSNP
rs978862330 3061 dbSNP
rs1237993193 3062 dbSNP
rs1263419764 3067 dbSNP
rs565866135 3070 dbSNP
rs547702810 3071 dbSNP
rs529148491 3074 dbSNP
rs912867348 3077 dbSNP
rs1440624544 3078 dbSNP
rs1198671367 3079 dbSNP
rs1426935270 3081 dbSNP
rs909378491 3085 dbSNP
rs1177388747 3094 dbSNP
rs1423121344 3096 dbSNP
rs988413906 3101 dbSNP
rs956908929 3102 dbSNP
rs1299892834 3103 dbSNP
rs1397321305 3104 dbSNP
rs1029872317 3106 dbSNP
rs867813562 3107 dbSNP
rs976918922 3110 dbSNP
rs1330108333 3111 dbSNP
rs964149212 3116 dbSNP
rs1222423669 3118 dbSNP
rs1277992469 3120 dbSNP
rs1371693029 3129 dbSNP
rs1018348753 3134 dbSNP
rs1224798995 3137 dbSNP
rs1006024042 3139 dbSNP
rs568263888 3144 dbSNP
rs1221608639 3145 dbSNP
rs1266742090 3145 dbSNP
rs916861369 3155 dbSNP
rs1490826273 3158 dbSNP
rs991770823 3160 dbSNP
rs1260782914 3163 dbSNP
rs1381189928 3164 dbSNP
rs369278516 3164 dbSNP
rs549959764 3165 dbSNP
rs888455265 3171 dbSNP
rs1030670980 3173 dbSNP
rs1387494986 3174 dbSNP
rs1026029973 3177 dbSNP
rs540985820 3180 dbSNP
rs1367952976 3184 dbSNP
rs531042222 3185 dbSNP
rs895734226 3187 dbSNP
rs1297903288 3190 dbSNP
rs778471136 3190 dbSNP
rs183791218 3191 dbSNP
rs1297323981 3195 dbSNP
rs190536608 3196 dbSNP
rs75823060 3197 dbSNP
rs1288993415 3203 dbSNP
rs1471797925 3203 dbSNP
rs1223149357 3207 dbSNP
rs1259917302 3208 dbSNP
rs559842809 3209 dbSNP
rs1188475792 3211 dbSNP
rs997492704 3217 dbSNP
rs912905517 3218 dbSNP
rs1181791835 3220 dbSNP
rs1387171669 3220 dbSNP
rs779769082 3224 dbSNP
rs367934548 3225 dbSNP
rs1465345804 3226 dbSNP
rs1247654611 3235 dbSNP
rs935610854 3236 dbSNP
rs1213985290 3237 dbSNP
rs901847050 3240 dbSNP
rs1289839285 3242 dbSNP
rs1388862914 3244 dbSNP
rs756051878 3247 dbSNP
rs117126734 3248 dbSNP
rs1312208004 3255 dbSNP
rs115067945 3258 dbSNP
rs767480999 3259 dbSNP
rs1228089834 3270 dbSNP
rs1314887959 3271 dbSNP
rs1357960513 3277 dbSNP
rs887905208 3278 dbSNP
rs1018817160 3293 dbSNP
rs1460990751 3299 dbSNP
rs1202027980 3300 dbSNP
rs1049674592 3302 dbSNP
rs948274277 3305 dbSNP
rs984228695 3313 dbSNP
rs952896993 3318 dbSNP
rs1363757879 3322 dbSNP
rs1405825223 3323 dbSNP
rs1267885970 3324 dbSNP
rs1334363310 3325 dbSNP
rs1407619482 3326 dbSNP
rs916808800 3327 dbSNP
rs992375387 3328 dbSNP
rs1025682766 3331 dbSNP
rs13708 3333 dbSNP
rs895766748 3334 dbSNP
rs1350084603 3336 dbSNP
rs1035584276 3341 dbSNP
rs1221876459 3342 dbSNP
rs1265281600 3343 dbSNP
rs1322677175 3346 dbSNP
rs1422471174 3356 dbSNP
rs923603198 3357 dbSNP
rs543583485 3358 dbSNP
rs905698420 3367 dbSNP
rs977766614 3379 dbSNP
rs968184780 3383 dbSNP
rs980850295 3392 dbSNP
rs1479684380 3398 dbSNP
rs1298362710 3407 dbSNP
rs143151167 3416 dbSNP
rs3833843 3416 dbSNP
rs1430913453 3438 dbSNP
rs1414716113 3444 dbSNP
rs1169056357 3447 dbSNP
rs1352277948 3450 dbSNP
rs915026604 3453 dbSNP
rs1169072006 3456 dbSNP
rs576082177 3462 dbSNP
rs1432288014 3463 dbSNP
rs947192427 3464 dbSNP
rs557817158 3465 dbSNP
rs576911808 3466 dbSNP
rs1029545219 3468 dbSNP
rs961318568 3468 dbSNP
rs998110370 3468 dbSNP
rs1479158205 3470 dbSNP
rs747264647 3472 dbSNP
rs1411198664 3473 dbSNP
rs1168696896 3490 dbSNP
rs932962840 3490 dbSNP
rs922905335 3493 dbSNP
rs1304668386 3495 dbSNP
rs1041319817 3499 dbSNP
rs1331524897 3502 dbSNP
rs887843501 3503 dbSNP
rs1364147200 3507 dbSNP
rs1229172573 3513 dbSNP
rs1291174241 3514 dbSNP
rs1357842558 3517 dbSNP
rs1225387785 3519 dbSNP
rs1292948106 3521 dbSNP
rs1446856465 3524 dbSNP
rs751623756 3528 dbSNP
rs1239950999 3531 dbSNP
rs1012790886 3537 dbSNP
rs1188565037 3547 dbSNP
rs942893234 3552 dbSNP
rs1489943018 3562 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HEK293S
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in GSM1084079. RNA binding protein: AGO2. Condition:CLIP_hippuristanol_rep2_AbnovaAb ...

- Karginov FV; Hannon GJ, 2013, Genes & development.

Article - Karginov FV; Hannon GJ
- Genes & development, 2013
When adapting to environmental stress, cells attenuate and reprogram their translational output. In part, these altered translation profiles are established through changes in the interactions between RNA-binding proteins and mRNAs. The Argonaute 2 (Ago2)/microRNA (miRNA) machinery has been shown to participate in stress-induced translational up-regulation of a particular mRNA, CAT-1; however, a detailed, transcriptome-wide understanding of the involvement of Ago2 in the process has been lacking. Here, we profiled the overall changes in Ago2-mRNA interactions upon arsenite stress by cross-linking immunoprecipitation (CLIP) followed by high-throughput sequencing (CLIP-seq). Ago2 displayed a significant remodeling of its transcript occupancy, with the majority of 3' untranslated region (UTR) and coding sequence (CDS) sites exhibiting stronger interaction. Interestingly, target sites that were destined for release from Ago2 upon stress were depleted in miRNA complementarity signatures, suggesting an alternative mode of interaction. To compare the changes in Ago2-binding patterns across transcripts with changes in their translational states, we measured mRNA profiles on ribosome/polysome gradients by RNA sequencing (RNA-seq). Increased Ago2 occupancy correlated with stronger repression of translation for those mRNAs, as evidenced by a shift toward lighter gradient fractions upon stress, while release of Ago2 was associated with the limited number of transcripts that remained translated. Taken together, these data point to a role for Ago2 and the mammalian miRNAs in mediating the translational component of the stress response.
LinkOut: [PMID: 23824327]
CLIP-seq Support 1 for dataset GSM1084079
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_hippuristanol_rep2_AbnovaAb
Location of target site ENST00000215095.5 | 3UTR | UGCAGCUGUGUGUGUGUGGCGUGCGUGUGUAUGCACGUGUGUGUGUGUGUUAGGGGC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
42 hsa-miR-6767-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT066671 DYRK2 dual specificity tyrosine phosphorylation regulated kinase 2 2 4
MIRT442663 GLRA2 glycine receptor alpha 2 2 2
MIRT457038 S1PR3 sphingosine-1-phosphate receptor 3 2 2
MIRT487824 HIST1H2AH histone cluster 1 H2A family member h 2 6
MIRT500161 CLEC2D C-type lectin domain family 2 member D 2 8
MIRT505924 RCAN3 RCAN family member 3 2 4
MIRT529861 GPR173 G protein-coupled receptor 173 2 2
MIRT569240 SUSD1 sushi domain containing 1 2 2
MIRT575091 Slc1a5 solute carrier family 1 (neutral amino acid transporter), member 5 2 5
MIRT575972 Slfn5 schlafen 5 2 3
MIRT606881 SLC1A5 solute carrier family 1 member 5 2 7
MIRT607097 SLFN5 schlafen family member 5 2 3
MIRT607990 NSUN3 NOP2/Sun RNA methyltransferase family member 3 2 6
MIRT608479 RRP36 ribosomal RNA processing 36 2 2
MIRT610984 GNA14 G protein subunit alpha 14 2 2
MIRT612308 WDR37 WD repeat domain 37 2 4
MIRT612777 MATN1 matrilin 1, cartilage matrix protein 2 4
MIRT615030 DNAL1 dynein axonemal light chain 1 2 2
MIRT615500 MPP2 membrane palmitoylated protein 2 2 2
MIRT618026 ELFN1 extracellular leucine rich repeat and fibronectin type III domain containing 1 2 2
MIRT618763 HS6ST3 heparan sulfate 6-O-sulfotransferase 3 2 2
MIRT621458 STX1B syntaxin 1B 2 2
MIRT622221 SLC36A1 solute carrier family 36 member 1 2 2
MIRT628784 TMEM154 transmembrane protein 154 2 2
MIRT632385 SNAPC3 small nuclear RNA activating complex polypeptide 3 2 2
MIRT652751 TFAM transcription factor A, mitochondrial 2 2
MIRT661806 NUP85 nucleoporin 85 2 2
MIRT663148 RD3 retinal degeneration 3 2 2
MIRT663867 MUC20 mucin 20, cell surface associated 2 2
MIRT664448 CCDC108 cilia and flagella associated protein 65 2 2
MIRT669932 LRPAP1 LDL receptor related protein associated protein 1 2 2
MIRT670303 RBBP4 RB binding protein 4, chromatin remodeling factor 2 2
MIRT672171 FAM174B family with sequence similarity 174 member B 2 2
MIRT672280 SHE Src homology 2 domain containing E 2 2
MIRT678057 RPL7L1 ribosomal protein L7 like 1 2 2
MIRT679781 GOLGA2 golgin A2 2 2
MIRT683451 ACOT2 acyl-CoA thioesterase 2 2 2
MIRT684218 C9orf64 chromosome 9 open reading frame 64 2 2
MIRT690932 RAD51 RAD51 recombinase 2 2
MIRT692944 EXOSC2 exosome component 2 2 2
MIRT700401 RAB13 RAB13, member RAS oncogene family 2 2
MIRT724462 PRKX protein kinase, X-linked 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-6767 Ceritinib 57379345 NSC776422 approved resistant cell line (H3122)

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