miRTarBase - #MIRT622390


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pre-miRNA Information
pre-miRNA hsa-mir-3152   
Genomic Coordinates chr9: 18573306 - 18573379
Description Homo sapiens miR-3152 stem-loop
Comment Berezikov et al. proposed this sequence as a miRNA candidate based on the RAKE method .
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-3152-5p
Sequence 11| AUUGCCUCUGUUCUAACACAAG |32
Evidence Experimental
Experiments Illumina
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1019691326 2 dbSNP
rs1282676806 8 dbSNP
rs762305650 11 dbSNP
rs1364318615 12 dbSNP
rs556364307 18 dbSNP
rs1002755159 19 dbSNP
rs1238555909 21 dbSNP
Putative Targets

miRNA Expression profile
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol RSBN1   
Synonyms ROSBIN
Description round spermatid basic protein 1
Transcript NM_018364   
Expression
Putative miRNA Targets on RSBN1
3'UTR of RSBN1
(miRNA target sites are highlighted)		 
>RSBN1|NM_018364|3'UTR
   1 TATGTACATATTCAAACACATTTTTTAACTTTTTTAAATTTTGATGTGAAGTTATAGTTTTATAACTGGCTTAAGTTAAG
  81 TTTTATTGGAGAAATCTTGCCTATAATTCTATAAAGAGAAATGACATTCCACAAATGTCAAGCATATCTTTTTTACACAG
 161 ATTATGCAAAGTTAAGAGTTGTATCTTATCCCGTTAGTACAGTATGTAATAGTGGGTCTGCTGCTACTTTCTGTTTTAAG
 241 GTGTGAGGTAACAATTCAATCTCTTCTTCAAATCAAAATGAGAATTCTCTGGAATAACAGATTCTTGTTTGGTAAATTAT
 321 TCACTTCCCTTAATTTTATCTTGCCTTGTCTCTTGCCATATTTGCTGTTTTTATGGATAAATAAGATTTATGGTTTAGTA
 401 CTTGTGTCTTTATGGCACAGGTTCAATTTCTACAGTGAAAATGGCATAGGTTGCAGGAAAGAATTTCTGCATCTGGTACA
 481 TGGGCAAGTAAGTTATTTAGTTCTAACCACAAATAACAAGTAGTTTCCAAGGAAATTTCAGTGGCTCTCTGGTTTCTTAA
 561 CAAAAGAGAAAGCACAGCACTTTCTGATCCAAACTGTCTTTTTTTTGTATCTGTTATTTAAAGCCCAGTGGATATTTCAA
 641 TTAAAAAAAAAATCTAAAGATGAATAGTCCTTGGTCATTCATTATCCATGGCTCATTAATCTCTTCTAGAATATATGCTA
 721 ACTGTTGAAGATATTTTGGGTAAAAGAGATAATGTTGACATGATACTCTATTGTTCTGCTTCCTGGCATCCTCACATTTT
 801 GTGGGGATAATTTTGCTTCCTAAACTGATCACAACTATTAAACTTAGAGAATAATAATAGTCTTTCTGATGAGGCTGCCA
 881 TATTTTGAGCATCAATCTTATGATAAACTATTCTTGTCACTTGGCATCAACCTCTTCATGATAAATATCTACTACTGAGA
 961 CACTTCAATTCACAGTTTTAACTGGTGAATACCTGGGTTTATTTACTATTACTCTGTGTTGCTATTTTCTAAGAAAGAAT
1041 ACAGCACTAGACTTCATCCTAGAGTTTCAGGTAGGCTAATGCTTAGTGCCTGAGTATTTAAATTTTCTTTTCAAACAGGC
1121 ACAGTTCACATTGCTAGTATGGTCCTAACTTTCTGTTATTTTAGAATGTTAACATGATTCACATTATACTTTCTCTTAGT
1201 TAATAATACAGTAGGCCTTTTGTTTATTAATGGAAGAGTACTCCCCACACCTAAGACCAGATTCTTATATCTCCCTGGTT
1281 ACAGTGCAATTTGGAGATTTTTTTTTTTTCCTGGATGGTAAGATTTGAAATATTTACATTAACATAGGCAAAAAAAAAAA
1361 AAAATACAAGATGCTGCTTTATTATGTCTGTCACCATGAAAACTTAGCTGCATCTTTTGAAATATCAAATATGAATTTTC
1441 TCTAAAATATTCTGAAATAGGTTAAATCTTATATAAATATTACTTTGTGCAATATTGTTGTGTAGTTAAATGCATATTAG
1521 CAAAGTATAGAGGTCACTGTGTAAACCGATAGAAAAGTAACCATCAGCAAATACTGCAGTGATTAGTTAGAATCTGTATT
1601 ATTCCTTATATATATGTATATGTATGTATTCTCTGTTACAAAGGATGAAGACAAATAGGGATACATTTCAATGTAAACCA
1681 TTTATGAATTGGAAGTGATGTTGGCTTTAGTTATCTTTGTAAATAAGGTAATTAGAATGGTATGAAAGGTAATGTGATTA
1761 TTGCAGGGGTGTTTTTAAATCTTGGGTATAAATTCTAGGGTAAATTCCAGTTTATCCAGACTAGTTTTTAACGGGACCTG
1841 CCTTTGAGGGTGTTTTTTGTTATTTTGTTGGGGAGGGGTTTAATCACAAAGTGTGTGGGTTTGGGTTATTTCTTGTTTTT
1921 ATTTTTCTGTCCAGAAGAGCTTTACCAGGCTGTGCAAAGTAAAATTCTTCTCAGGCAACATTTGCTTTTAAAAATAATCA
2001 TGAAGAGAAGGCTGTTAAAGCAAAAATTTTTTTTTTTTAATTTTTTCTTGTCTTCCAAGATCCGATTTCCCCATCTCCCA
2081 CTTGCCATCCAGCAGATGCCATCTGTCATCCAAGCTGGTCATTGCTAATAAACAAGGAGACTGTCTCCTGACAGCCAGCA
2161 CTGTGTATTATCACTCAGGAACCAGCGGATCTGCAAAGACCTACAATCAAAAGCAAATCCCCATTTTCCTTTTATAAAAC
2241 ATTCTACCCTCACCTCCAATATAAACACATTAAAAGAGTACAATAAAAATGTTTAAAATCATGTACTAATAAATTCATTG
2321 TATGTTAGAATTGCAATAGAATGAAGAGAAACATTTAGCTAGTAACGTGATCTGAAAACTGAATGTCCTATGTGAGTATT
2401 AGATTTTAATAGCATGCTTTAAAGACTGATGAGTATAAAAGCAGAAGTTTTGCGTTTTTTACTGCTTTCAAAGCTGTATC
2481 CTAGTTTAGTGATACAAATGATTGCAATTTTTCTAAATCATTAAATTATTTGGTTTGGTGGAGTGAGGCATGGAGCAATC
2561 TGGCGTCTTCTGATTTGTTAAAGTAGTGATGGCAGTGAAGTTGTAACTGAAATTTAAGCTGATCTTCCTTTTTGGTATAT
2641 TATCCGTTGTGCCAGCTCTTGAGATTACTTGCACAATGTGGCTATAAGTTTTAATATTTTGTGGAGCAGAGGGATGGTTT
2721 TTAAATGTGCTTATGGAAAGGACCCAATAAATGAATATTCCTAACTTAGTAAAGTAGAATAATTTCATGGTATTCATTAA
2801 AAAGCATAAAAGTCTTCCTCTTGCCCCAGAAGTAATTCTCTATACCAAGATATGCTAGGAGTAGGATGATGATTCAAAGT
2881 GGTAACCCAAATTCATAAAGCAATAATAATAAAAACCTATATAGTATGTTCTCTCCTCCAAAGTTTTAACTCTAAAAATT
2961 GGTTCCTAGGTTTAATTGTACCTTTAATTTGCTTATTCAGTACTTAGAATTTGTTTAACTGGTACTTTTATTATTTTTTA
3041 GTGAAAGACTTTTGAAAAGTGCCCTTTCCCCTTAAGAGACAGTTGGAATACCAGTTGACTAATATTACAAGCTCTTGTAG
3121 GGGGAAAAAGGAGCTTATTAAAGTTGTTTACTAAACTTTAGGAAAAGATGTCTTGCATCAGTCTTACTAGGCATAAAAGT
3201 CACACTTAATGACTGGAAAAAACTTGCTTATTGCCTTTCCCTATATAAATATTAATTGTCTAGAATGAAAGCTAATATAG
3281 GAACAAGACTCCCAAATCCATGAAAACGCTTAGTGAATATATTCTTAATCATTAATAAATTAGCCCATTATATTTTCATC
3361 TGTATTTGCCATAAAAAATTTATTTGCATTTATGCCTTTAGGATAATTTTGTATCTTTCTAATCTGTTTTATCATTGCTA
3441 CAGGTTTTTAAAAAAGAACCTTTCACTAGCTAGCACATGCCAGAGGTTCACATCTGTTTTGTTTTTCAAACAGGTCGTAG
3521 CTGTATTTATTGGCCATGCAAGTAGAGGAAATGCACAGTACAAATGTTTTTCTTTAGCACGTAAGGGACCTATCCTTGTC
3601 TTGAAAGTTTGTTGCTTTAAAAGCAAGTATCTCTCCATAAATATTATGGCCTTCCATTTTCTTCATACATTTTTTAGGAT
3681 CCACTTGTGCATGTAGTTGAGACCACTGTCTCTTAAAATATAGCACTTTTCAATTCTCTCTAAAGAAATACTTATGTACT
3761 ACTATCACATGTTGTAAATTTTCATGTAATAGTGTTTTCTGTGAGTAAACTCCATTTTGATTGGCAGCTAAGACTTTTTT
3841 TCCTGTGGCTTTTATTTATCTAAGAGGTCTTTGCATATAGATGAAATGTATATTTGCCTGGCGGACTATTTGCGTTGTGT
3921 GGCCTTAGTTTGTTTATTGACATTAACGAGTGTTTTAAAAAGGTTTTTAATGAATAGTCTTAAATCTAAATTTGTGTGAA
4001 TAATCCTTTTAACACAGTGCTTTTTTGTAGCTGTCTAAGTGTGTTAAATTGTTAAGCTATTTCTTTGTAAAATAGGACAA
4081 TGGAATGCATAGTTTTTTTTTTTCCTGTAAAGTATTTTTTTAATAAAAAAAGTCTGATTTGTCCTTTAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' gaACACAAUCUUGU-CUCCGUUa 5'
            ||| ||| :::: ||||:|| 
Target 5' tcTGTTTTAAGGTGTGAGGTAAc 3'
 230 - 252 144.00 -9.50
2 
miRNA  3' gaACACAAUCUUGUCUCCGUua 5'
            | || |:||:: ||||||  
Target 5' ggTTTGGTGGAGT-GAGGCAtg 3'
 2532 - 2552 139.00 -14.70
3 
miRNA  3' gaacacaaucUUGUCUCCGUUa 5'
                    |||| |||||| 
Target 5' tatttacattAACATAGGCAAa 3'
 1331 - 1352 128.00 -9.00
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN31552726 7 COSMIC
COSN24132166 13 COSMIC
COSN30522636 35 COSMIC
COSN30172515 96 COSMIC
COSN24129508 109 COSMIC
COSN30141981 114 COSMIC
COSN8635408 123 COSMIC
COSN24129507 148 COSMIC
COSN24129506 185 COSMIC
COSN30173503 274 COSMIC
COSN31608375 332 COSMIC
COSN31569238 356 COSMIC
COSN28814201 435 COSMIC
COSN8964246 577 COSMIC
COSN22712585 617 COSMIC
COSN1401990 699 COSMIC
COSN20095191 1103 COSMIC
COSN20095188 1298 COSMIC
COSN20095187 1349 COSMIC
COSN27263463 1350 COSMIC
COSN31481805 1454 COSMIC
COSN29954006 1455 COSMIC
COSN22838096 1614 COSMIC
COSN1401988 1685 COSMIC
COSN26562717 1764 COSMIC
COSN31566310 1795 COSMIC
COSN8887584 1840 COSMIC
COSN30105132 2026 COSMIC
COSN24103508 2027 COSMIC
COSN30307558 2063 COSMIC
COSN20095183 2230 COSMIC
COSN31547938 2341 COSMIC
COSN28808453 2367 COSMIC
COSN8635407 2367 COSMIC
COSN9360969 2433 COSMIC
COSN19200135 2454 COSMIC
COSN8635406 2550 COSMIC
COSN4708133 2824 COSMIC
COSN31550005 3045 COSMIC
COSN31595814 3118 COSMIC
COSN31564818 3143 COSMIC
COSN23244780 3223 COSMIC
COSN9360968 3226 COSMIC
COSN31516550 3287 COSMIC
COSN29548793 3308 COSMIC
COSN9023274 3421 COSMIC
COSN31524653 3581 COSMIC
COSN9360967 3712 COSMIC
COSN19660818 3757 COSMIC
COSN31524076 3793 COSMIC
COSN25631678 3899 COSMIC
COSN15715032 3948 COSMIC
COSN31590531 3948 COSMIC
COSN31551517 4020 COSMIC
COSN14998038 4055 COSMIC
COSN28997776 4092 COSMIC
COSN27485266 4093 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs762660531 2 dbSNP
rs1365891751 3 dbSNP
rs775094957 4 dbSNP
rs769626570 15 dbSNP
rs1255942649 19 dbSNP
rs535539636 21 dbSNP
rs1486337973 27 dbSNP
rs780812925 35 dbSNP
rs1330137422 37 dbSNP
rs1320330083 46 dbSNP
rs1219500742 52 dbSNP
rs1255584185 55 dbSNP
rs1034994092 57 dbSNP
rs576072851 62 dbSNP
rs973609794 70 dbSNP
rs1183934324 83 dbSNP
rs576332093 85 dbSNP
rs892920242 98 dbSNP
rs188304457 101 dbSNP
rs1377393137 111 dbSNP
rs1056030232 130 dbSNP
rs539222725 131 dbSNP
rs937211596 135 dbSNP
rs1249521543 138 dbSNP
rs1193911164 163 dbSNP
rs1316286558 177 dbSNP
rs570745954 178 dbSNP
rs928522027 184 dbSNP
rs547328437 189 dbSNP
rs963629859 192 dbSNP
rs1376635245 197 dbSNP
rs1399905769 211 dbSNP
rs1296832671 231 dbSNP
rs1016549577 237 dbSNP
rs1334271061 240 dbSNP
rs12723560 242 dbSNP
rs1400613807 248 dbSNP
rs1300924399 252 dbSNP
rs1310666418 255 dbSNP
rs1256350192 259 dbSNP
rs1352650761 264 dbSNP
rs1003835703 266 dbSNP
rs1287991170 269 dbSNP
rs1488340308 270 dbSNP
rs981325358 276 dbSNP
rs374084927 282 dbSNP
rs1029426184 287 dbSNP
rs908505568 289 dbSNP
rs982813898 292 dbSNP
rs1445023990 300 dbSNP
rs568112262 324 dbSNP
rs1434511071 327 dbSNP
rs952901978 328 dbSNP
rs998402911 330 dbSNP
rs1396089524 338 dbSNP
rs1419435576 340 dbSNP
rs1157385755 341 dbSNP
rs1336906868 342 dbSNP
rs1027110047 348 dbSNP
rs1292985248 357 dbSNP
rs1365820369 363 dbSNP
rs548305462 364 dbSNP
rs1039586118 372 dbSNP
rs1375883693 377 dbSNP
rs1000106716 378 dbSNP
rs975968278 379 dbSNP
rs1354321717 388 dbSNP
rs1220237832 389 dbSNP
rs964210828 394 dbSNP
rs556304219 423 dbSNP
rs1489145482 426 dbSNP
rs1019755213 434 dbSNP
rs1237113032 435 dbSNP
rs1041701150 460 dbSNP
rs946078474 471 dbSNP
rs1415065479 472 dbSNP
rs1382747624 483 dbSNP
rs1008393375 495 dbSNP
rs562808416 500 dbSNP
rs1348240192 505 dbSNP
rs1057238036 520 dbSNP
rs1326844850 529 dbSNP
rs1399821159 540 dbSNP
rs1020362550 542 dbSNP
rs1363217228 543 dbSNP
rs1444386877 543 dbSNP
rs781293883 544 dbSNP
rs927456570 545 dbSNP
rs973578750 547 dbSNP
rs1469656200 549 dbSNP
rs1322999476 569 dbSNP
rs1244804296 572 dbSNP
rs963556661 573 dbSNP
rs1456151487 574 dbSNP
rs892857505 589 dbSNP
rs552761469 590 dbSNP
rs1481142323 592 dbSNP
rs755048256 597 dbSNP
rs1468055070 598 dbSNP
rs1425695831 603 dbSNP
rs1287771453 607 dbSNP
rs1423230261 607 dbSNP
rs1225584604 609 dbSNP
rs1352011224 611 dbSNP
rs1279554968 613 dbSNP
rs937085182 628 dbSNP
rs1373678404 639 dbSNP
rs1303639595 643 dbSNP
rs951096566 650 dbSNP
rs527344410 653 dbSNP
rs796758991 653 dbSNP
rs532552591 654 dbSNP
rs750436588 657 dbSNP
rs1315478218 662 dbSNP
rs1018118314 669 dbSNP
rs769480554 677 dbSNP
rs1209840792 691 dbSNP
rs904407551 699 dbSNP
rs370616275 705 dbSNP
rs147792641 706 dbSNP
rs1188806745 709 dbSNP
rs1262595636 713 dbSNP
rs1400856269 715 dbSNP
rs1173094969 723 dbSNP
rs1413753482 724 dbSNP
rs1420418556 724 dbSNP
rs560852959 731 dbSNP
rs907828068 733 dbSNP
rs1360876346 761 dbSNP
rs1415351473 763 dbSNP
rs540916332 766 dbSNP
rs1337783373 769 dbSNP
rs1401238399 773 dbSNP
rs765023765 776 dbSNP
rs1366466117 784 dbSNP
rs572115282 788 dbSNP
rs1276916851 793 dbSNP
rs1350441405 794 dbSNP
rs1212264825 805 dbSNP
rs1057449476 807 dbSNP
rs139109872 808 dbSNP
rs1395488029 816 dbSNP
rs937437370 819 dbSNP
rs1192814021 822 dbSNP
rs1242977901 827 dbSNP
rs541978910 828 dbSNP
rs1477811675 845 dbSNP
rs761670206 852 dbSNP
rs1427050070 856 dbSNP
rs919992491 858 dbSNP
rs1245259420 867 dbSNP
rs1157987224 872 dbSNP
rs576102761 874 dbSNP
rs1218034305 877 dbSNP
rs1037799059 879 dbSNP
rs753532042 880 dbSNP
rs539493327 883 dbSNP
rs908110775 884 dbSNP
rs539623122 895 dbSNP
rs1276211828 897 dbSNP
rs1373651016 898 dbSNP
rs576954298 900 dbSNP
rs1350734523 901 dbSNP
rs763857717 910 dbSNP
rs554082491 936 dbSNP
rs533815213 938 dbSNP
rs955158697 939 dbSNP
rs1207025689 948 dbSNP
rs1281466162 949 dbSNP
rs1285076136 963 dbSNP
rs1451073616 968 dbSNP
rs1234094918 974 dbSNP
rs1219656720 977 dbSNP
rs922284089 982 dbSNP
rs1454593914 983 dbSNP
rs865799582 995 dbSNP
rs568152504 997 dbSNP
rs1020556082 1002 dbSNP
rs1011643305 1003 dbSNP
rs957030329 1011 dbSNP
rs1034448064 1021 dbSNP
rs554560378 1042 dbSNP
rs796589947 1043 dbSNP
rs1001246502 1051 dbSNP
rs906961886 1062 dbSNP
rs1018044955 1064 dbSNP
rs1296220849 1065 dbSNP
rs1045585157 1069 dbSNP
rs1442181902 1074 dbSNP
rs1264167874 1075 dbSNP
rs760452347 1085 dbSNP
rs1375087956 1093 dbSNP
rs1241849643 1094 dbSNP
rs1280585990 1107 dbSNP
rs76183893 1113 dbSNP
rs968559885 1116 dbSNP
rs1020155013 1120 dbSNP
rs1010143650 1130 dbSNP
rs1469054278 1131 dbSNP
rs1412609602 1139 dbSNP
rs1197834620 1141 dbSNP
rs895758311 1143 dbSNP
rs1439295842 1155 dbSNP
rs1423242969 1156 dbSNP
rs1182445769 1169 dbSNP
rs570698775 1173 dbSNP
rs1367762708 1174 dbSNP
rs1471555123 1180 dbSNP
rs1166458408 1196 dbSNP
rs1188517538 1206 dbSNP
rs1035654541 1238 dbSNP
rs1168049622 1241 dbSNP
rs1004760562 1243 dbSNP
rs1398568721 1244 dbSNP
rs1262529308 1253 dbSNP
rs1330215677 1264 dbSNP
rs1340395070 1267 dbSNP
rs1445965723 1268 dbSNP
rs1191659103 1273 dbSNP
rs886337042 1274 dbSNP
rs1295183081 1279 dbSNP
rs1335493302 1283 dbSNP
rs1001947442 1284 dbSNP
rs184323168 1286 dbSNP
rs1196141413 1289 dbSNP
rs1255463428 1298 dbSNP
rs1440593864 1300 dbSNP
rs1168116556 1310 dbSNP
rs1189502431 1310 dbSNP
rs1477173340 1310 dbSNP
rs34446138 1310 dbSNP
rs1281754615 1311 dbSNP
rs1168821814 1312 dbSNP
rs1402181934 1316 dbSNP
rs1315305082 1327 dbSNP
rs1356181299 1328 dbSNP
rs1210535360 1337 dbSNP
rs1310825406 1340 dbSNP
rs74617142 1343 dbSNP
rs1276606180 1344 dbSNP
rs1214825505 1345 dbSNP
rs1338388460 1346 dbSNP
rs905925834 1347 dbSNP
rs1210359258 1348 dbSNP
rs1484819945 1349 dbSNP
rs1342566563 1350 dbSNP
rs397933458 1350 dbSNP
rs868513524 1350 dbSNP
rs879120626 1356 dbSNP
rs1460155462 1365 dbSNP
rs1491030576 1365 dbSNP
rs533547691 1365 dbSNP
rs76130986 1365 dbSNP
rs879241787 1365 dbSNP
rs1416148703 1366 dbSNP
rs1356004785 1367 dbSNP
rs1452889643 1370 dbSNP
rs1176093537 1374 dbSNP
rs930569846 1381 dbSNP
rs768498965 1385 dbSNP
rs1312204361 1411 dbSNP
rs569339472 1412 dbSNP
rs1387473343 1418 dbSNP
rs1383011942 1430 dbSNP
rs746830645 1432 dbSNP
rs886595890 1444 dbSNP
rs1048395131 1445 dbSNP
rs1356083484 1449 dbSNP
rs1236209649 1450 dbSNP
rs1304163526 1456 dbSNP
rs1352857684 1475 dbSNP
rs772415977 1477 dbSNP
rs1262000358 1492 dbSNP
rs1410725040 1497 dbSNP
rs1485887224 1500 dbSNP
rs933585902 1502 dbSNP
rs1264753548 1506 dbSNP
rs923521284 1514 dbSNP
rs976412396 1515 dbSNP
rs780089127 1520 dbSNP
rs1439595530 1527 dbSNP
rs1365612782 1533 dbSNP
rs552351289 1534 dbSNP
rs1454326823 1546 dbSNP
rs942357033 1547 dbSNP
rs758457780 1548 dbSNP
rs564275709 1550 dbSNP
rs758812661 1551 dbSNP
rs1476232654 1555 dbSNP
rs1237913146 1570 dbSNP
rs749577489 1574 dbSNP
rs1317000016 1578 dbSNP
rs986912042 1581 dbSNP
rs968487712 1598 dbSNP
rs1181816580 1608 dbSNP
rs1469505439 1609 dbSNP
rs1020110970 1610 dbSNP
rs989051626 1614 dbSNP
rs967545609 1615 dbSNP
rs1254040624 1619 dbSNP
rs959946940 1626 dbSNP
rs1176002927 1628 dbSNP
rs1253275111 1630 dbSNP
rs1419820756 1639 dbSNP
rs1482460072 1639 dbSNP
rs1234925913 1658 dbSNP
rs913401322 1667 dbSNP
rs990391900 1671 dbSNP
rs192520752 1672 dbSNP
rs745909890 1678 dbSNP
rs1436846828 1704 dbSNP
rs1001236667 1712 dbSNP
rs1165877256 1730 dbSNP
rs1399283713 1733 dbSNP
rs767200795 1742 dbSNP
rs971135860 1743 dbSNP
rs566947141 1751 dbSNP
rs1255833456 1757 dbSNP
rs41306189 1766 dbSNP
rs1373960471 1774 dbSNP
rs1394986772 1781 dbSNP
rs1016246530 1785 dbSNP
rs1336231857 1786 dbSNP
rs1234515726 1799 dbSNP
rs1233555269 1814 dbSNP
rs1024084869 1825 dbSNP
rs1004706427 1832 dbSNP
rs758954240 1833 dbSNP
rs117761881 1835 dbSNP
rs545297026 1838 dbSNP
rs530400162 1840 dbSNP
rs1481235804 1853 dbSNP
rs561530092 1862 dbSNP
rs900451545 1870 dbSNP
rs1476191196 1874 dbSNP
rs1188937405 1878 dbSNP
rs1408063562 1891 dbSNP
rs1423163545 1891 dbSNP
rs1039675370 1898 dbSNP
rs942726806 1903 dbSNP
rs891195022 1904 dbSNP
rs1355091108 1915 dbSNP
rs771304523 1925 dbSNP
rs1310951922 1934 dbSNP
rs1356818122 1945 dbSNP
rs1375507454 1951 dbSNP
rs541868211 1967 dbSNP
rs1051097660 1972 dbSNP
rs946139977 1973 dbSNP
rs913359131 1984 dbSNP
rs902066659 1988 dbSNP
rs1275583650 1989 dbSNP
rs1308410905 1999 dbSNP
rs990733085 2000 dbSNP
rs1210808027 2007 dbSNP
rs531160982 2010 dbSNP
rs1486726292 2011 dbSNP
rs1463038743 2015 dbSNP
rs943627236 2026 dbSNP
rs562612424 2027 dbSNP
rs978460501 2027 dbSNP
rs1188457196 2032 dbSNP
rs979749995 2037 dbSNP
rs545577768 2038 dbSNP
rs576995992 2039 dbSNP
rs912979546 2039 dbSNP
rs988631806 2039 dbSNP
rs1434843348 2040 dbSNP
rs1297017313 2050 dbSNP
rs749685298 2063 dbSNP
rs1432502772 2064 dbSNP
rs928509912 2071 dbSNP
rs1363111880 2072 dbSNP
rs1023990580 2087 dbSNP
rs188008448 2091 dbSNP
rs183165277 2096 dbSNP
rs1016215519 2102 dbSNP
rs950523559 2103 dbSNP
rs1283679741 2107 dbSNP
rs1445313292 2108 dbSNP
rs1027480500 2114 dbSNP
rs1242856273 2126 dbSNP
rs1488074898 2127 dbSNP
rs995117255 2140 dbSNP
rs1178134221 2143 dbSNP
rs1396866237 2147 dbSNP
rs1454673441 2151 dbSNP
rs1457603089 2152 dbSNP
rs1157938900 2157 dbSNP
rs900398469 2167 dbSNP
rs1235915931 2168 dbSNP
rs1401884113 2168 dbSNP
rs1006181241 2170 dbSNP
rs1348934249 2173 dbSNP
rs1440675954 2176 dbSNP
rs1324272012 2186 dbSNP
rs1373577384 2187 dbSNP
rs1235709439 2200 dbSNP
rs773616281 2201 dbSNP
rs1279416649 2207 dbSNP
rs12132784 2214 dbSNP
rs1225526604 2215 dbSNP
rs77771966 2228 dbSNP
rs79252283 2230 dbSNP
rs56960726 2234 dbSNP
rs796908243 2234 dbSNP
rs997672128 2239 dbSNP
rs372605799 2240 dbSNP
rs1218816870 2246 dbSNP
rs1318654086 2248 dbSNP
rs891100352 2249 dbSNP
rs192278191 2251 dbSNP
rs1231093072 2265 dbSNP
rs554394494 2267 dbSNP
rs1222939529 2272 dbSNP
rs1374418826 2276 dbSNP
rs1412678341 2283 dbSNP
rs946117556 2288 dbSNP
rs538245794 2289 dbSNP
rs769040582 2291 dbSNP
rs1039234972 2302 dbSNP
rs1007809477 2303 dbSNP
rs1397145696 2312 dbSNP
rs1328845607 2315 dbSNP
rs1442023255 2315 dbSNP
rs891911521 2324 dbSNP
rs1395551529 2334 dbSNP
rs904147587 2336 dbSNP
rs1354858457 2337 dbSNP
rs1231696292 2340 dbSNP
rs1275223341 2340 dbSNP
rs1292997883 2346 dbSNP
rs1456513046 2350 dbSNP
rs1335305814 2362 dbSNP
rs1042708551 2366 dbSNP
rs187476848 2367 dbSNP
rs947046283 2369 dbSNP
rs1054629479 2372 dbSNP
rs1160484860 2382 dbSNP
rs936192585 2390 dbSNP
rs927517516 2392 dbSNP
rs1418104224 2394 dbSNP
rs912955122 2398 dbSNP
rs980321507 2404 dbSNP
rs1053260918 2411 dbSNP
rs1394725017 2415 dbSNP
rs1412162590 2430 dbSNP
rs1330068933 2434 dbSNP
rs559057649 2435 dbSNP
rs1378885344 2452 dbSNP
rs916881412 2453 dbSNP
rs748440238 2454 dbSNP
rs1266317589 2457 dbSNP
rs1226483651 2462 dbSNP
rs1268219539 2464 dbSNP
rs983554844 2473 dbSNP
rs1341158520 2487 dbSNP
rs1188881545 2501 dbSNP
rs1279447340 2507 dbSNP
rs1486571368 2513 dbSNP
rs183546989 2516 dbSNP
rs1215851043 2523 dbSNP
rs1351476810 2531 dbSNP
rs1027840721 2537 dbSNP
rs969908883 2542 dbSNP
rs909141927 2549 dbSNP
rs191025345 2557 dbSNP
rs1476563524 2558 dbSNP
rs973247209 2564 dbSNP
rs1169850259 2565 dbSNP
rs1375370380 2580 dbSNP
rs1432987001 2583 dbSNP
rs964870948 2600 dbSNP
rs1376092122 2605 dbSNP
rs1381891858 2609 dbSNP
rs1017407583 2631 dbSNP
rs1234819918 2637 dbSNP
rs1316403703 2639 dbSNP
rs1371992557 2644 dbSNP
rs1227870412 2645 dbSNP
rs781381832 2646 dbSNP
rs547232492 2649 dbSNP
rs1385092390 2650 dbSNP
rs1345602286 2652 dbSNP
rs1236344265 2655 dbSNP
rs1280461499 2664 dbSNP
rs1364198177 2671 dbSNP
rs1203019952 2672 dbSNP
rs1026340012 2673 dbSNP
rs1449165767 2674 dbSNP
rs1008728025 2684 dbSNP
rs1359252845 2709 dbSNP
rs1175911871 2711 dbSNP
rs530290545 2715 dbSNP
rs1176029849 2728 dbSNP
rs1378278461 2731 dbSNP
rs890379365 2734 dbSNP
rs1029611765 2742 dbSNP
rs966189415 2753 dbSNP
rs1017786349 2756 dbSNP
rs573482200 2769 dbSNP
rs1443017984 2778 dbSNP
rs891863240 2788 dbSNP
rs1303992923 2789 dbSNP
rs1054978492 2790 dbSNP
rs141499058 2805 dbSNP
rs906007203 2809 dbSNP
rs1044588505 2810 dbSNP
rs1192367537 2812 dbSNP
rs531384521 2817 dbSNP
rs1350920017 2825 dbSNP
rs950247732 2828 dbSNP
rs1212622849 2829 dbSNP
rs1009843638 2834 dbSNP
rs562322836 2842 dbSNP
rs1047371139 2845 dbSNP
rs1211248898 2854 dbSNP
rs764308954 2860 dbSNP
rs545916770 2862 dbSNP
rs928990684 2877 dbSNP
rs1156971457 2879 dbSNP
rs1365812911 2880 dbSNP
rs532122970 2883 dbSNP
rs866662518 2889 dbSNP
rs187205650 2899 dbSNP
rs1309525647 2906 dbSNP
rs964432241 2913 dbSNP
rs540039120 2916 dbSNP
rs574249215 2921 dbSNP
rs1339007169 2924 dbSNP
rs1315373428 2926 dbSNP
rs1415733677 2936 dbSNP
rs1389230198 2938 dbSNP
rs866155436 2943 dbSNP
rs1308540825 2944 dbSNP
rs1335789984 2946 dbSNP
rs1232302019 2954 dbSNP
rs1044173920 2960 dbSNP
rs1401985848 2970 dbSNP
rs987298906 2976 dbSNP
rs1171237138 2978 dbSNP
rs948568925 2991 dbSNP
rs1463183112 2994 dbSNP
rs569645169 3000 dbSNP
rs1252763890 3012 dbSNP
rs1169331541 3019 dbSNP
rs1021314496 3023 dbSNP
rs1476556066 3023 dbSNP
rs1419865133 3025 dbSNP
rs984654961 3028 dbSNP
rs753085435 3033 dbSNP
rs1253780587 3040 dbSNP
rs1010225511 3054 dbSNP
rs1165193081 3054 dbSNP
rs956206100 3059 dbSNP
rs1033034991 3062 dbSNP
rs1197385942 3063 dbSNP
rs1000650954 3064 dbSNP
rs867002014 3070 dbSNP
rs868348569 3071 dbSNP
rs1370647010 3091 dbSNP
rs905956398 3097 dbSNP
rs1044579437 3100 dbSNP
rs919245307 3101 dbSNP
rs1356937747 3114 dbSNP
rs1230436181 3123 dbSNP
rs753800332 3125 dbSNP
rs1218030736 3138 dbSNP
rs1203052089 3144 dbSNP
rs1316170470 3145 dbSNP
rs139818522 3149 dbSNP
rs966487644 3152 dbSNP
rs896055206 3154 dbSNP
rs1182623041 3159 dbSNP
rs1418528601 3160 dbSNP
rs1426456330 3164 dbSNP
rs1172514204 3165 dbSNP
rs1390706087 3166 dbSNP
rs755969169 3177 dbSNP
rs1376690870 3183 dbSNP
rs929593181 3187 dbSNP
rs1287867030 3203 dbSNP
rs1022498590 3204 dbSNP
rs1213177986 3209 dbSNP
rs575625962 3220 dbSNP
rs920214881 3226 dbSNP
rs1037378700 3227 dbSNP
rs112619152 3228 dbSNP
rs910342201 3230 dbSNP
rs1419428008 3240 dbSNP
rs906933074 3243 dbSNP
rs1241727629 3245 dbSNP
rs1044143557 3248 dbSNP
rs1188012719 3253 dbSNP
rs1390762065 3257 dbSNP
rs1472413351 3258 dbSNP
rs1453746602 3260 dbSNP
rs1366715640 3262 dbSNP
rs987247951 3264 dbSNP
rs540148882 3276 dbSNP
rs1158011027 3278 dbSNP
rs1419469832 3301 dbSNP
rs553914943 3307 dbSNP
rs954573507 3308 dbSNP
rs1322995994 3317 dbSNP
rs1366333960 3331 dbSNP
rs372434083 3346 dbSNP
rs1301799914 3347 dbSNP
rs929214389 3358 dbSNP
rs919185953 3368 dbSNP
rs1283873766 3370 dbSNP
rs913748575 3372 dbSNP
rs976457469 3376 dbSNP
rs1248445247 3379 dbSNP
rs538991422 3379 dbSNP
rs746798500 3379 dbSNP
rs1275105582 3380 dbSNP
rs758998724 3386 dbSNP
rs957985997 3386 dbSNP
rs1033394587 3387 dbSNP
rs910577289 3395 dbSNP
rs573397327 3398 dbSNP
rs978792793 3402 dbSNP
rs1478093420 3409 dbSNP
rs1241546482 3411 dbSNP
rs142297769 3413 dbSNP
rs1402119883 3425 dbSNP
rs1159361189 3429 dbSNP
rs114677328 3434 dbSNP
rs1444080819 3443 dbSNP
rs1324546073 3450 dbSNP
rs1022468775 3456 dbSNP
rs988329312 3456 dbSNP
rs1014358916 3458 dbSNP
rs895961863 3459 dbSNP
rs1230468355 3471 dbSNP
rs1026486021 3475 dbSNP
rs566405649 3484 dbSNP
rs1211558409 3486 dbSNP
rs1292003033 3492 dbSNP
rs899447951 3494 dbSNP
rs1203688395 3507 dbSNP
rs1388417069 3509 dbSNP
rs760025785 3510 dbSNP
rs772761990 3516 dbSNP
rs1416707206 3517 dbSNP
rs1022616148 3522 dbSNP
rs1037770019 3525 dbSNP
rs764590444 3525 dbSNP
rs551324344 3527 dbSNP
rs1163194300 3530 dbSNP
rs1393263158 3533 dbSNP
rs1406491641 3534 dbSNP
rs761387778 3543 dbSNP
rs888853147 3546 dbSNP
rs1379422679 3556 dbSNP
rs1176599878 3557 dbSNP
rs148346013 3557 dbSNP
rs1289267524 3558 dbSNP
rs1355037614 3566 dbSNP
rs1438053765 3573 dbSNP
rs1255206835 3580 dbSNP
rs933090070 3581 dbSNP
rs1195174817 3590 dbSNP
rs773686553 3598 dbSNP
rs1288286632 3603 dbSNP
rs765891606 3605 dbSNP
rs1205210865 3613 dbSNP
rs1355093415 3616 dbSNP
rs983179566 3623 dbSNP
rs1256426062 3627 dbSNP
rs988002351 3640 dbSNP
rs936579280 3644 dbSNP
rs182615314 3645 dbSNP
rs551905711 3647 dbSNP
rs978743480 3669 dbSNP
rs1167914512 3676 dbSNP
rs1417956140 3680 dbSNP
rs970016210 3681 dbSNP
rs1431758816 3685 dbSNP
rs1328882848 3689 dbSNP
rs1022987879 3694 dbSNP
rs77020895 3701 dbSNP
rs1374888152 3703 dbSNP
rs1413175927 3719 dbSNP
rs992873213 3724 dbSNP
rs1340907340 3731 dbSNP
rs960157941 3733 dbSNP
rs1319765692 3735 dbSNP
rs1226409012 3740 dbSNP
rs1026889548 3751 dbSNP
rs993718489 3755 dbSNP
rs548094892 3758 dbSNP
rs1016500386 3769 dbSNP
rs1359891597 3771 dbSNP
rs559822911 3776 dbSNP
rs910546179 3785 dbSNP
rs1279030748 3792 dbSNP
rs1345030793 3795 dbSNP
rs1201836350 3797 dbSNP
rs1256416168 3803 dbSNP
rs546277746 3810 dbSNP
rs1007779215 3820 dbSNP
rs770204359 3821 dbSNP
rs888758399 3825 dbSNP
rs1246525164 3829 dbSNP
rs1451916755 3835 dbSNP
rs1051383219 3837 dbSNP
rs1174597947 3842 dbSNP
rs1394575288 3842 dbSNP
rs543444128 3842 dbSNP
rs529882810 3845 dbSNP
rs1050455203 3873 dbSNP
rs1381485633 3878 dbSNP
rs1315983643 3880 dbSNP
rs1173395968 3890 dbSNP
rs1435729143 3892 dbSNP
rs1302513176 3898 dbSNP
rs369487172 3902 dbSNP
rs760523684 3903 dbSNP
rs768718695 3908 dbSNP
rs988701956 3913 dbSNP
rs544531793 3914 dbSNP
rs1202962250 3918 dbSNP
rs925119374 3922 dbSNP
rs1466486619 3923 dbSNP
rs928140796 3924 dbSNP
rs1252921172 3932 dbSNP
rs529551807 3932 dbSNP
rs1214830779 3938 dbSNP
rs1201059283 3968 dbSNP
rs982356283 3981 dbSNP
rs1453356772 3986 dbSNP
rs969619166 3989 dbSNP
rs1218248263 3993 dbSNP
rs1022546171 3994 dbSNP
rs1342504723 4001 dbSNP
rs1325185927 4004 dbSNP
rs747130219 4009 dbSNP
rs1388398063 4012 dbSNP
rs1271421764 4017 dbSNP
rs568666920 4018 dbSNP
rs767128689 4019 dbSNP
rs550250345 4027 dbSNP
rs1296277033 4029 dbSNP
rs1027432810 4037 dbSNP
rs1209712685 4037 dbSNP
rs754138671 4037 dbSNP
rs111954695 4041 dbSNP
rs1487802736 4041 dbSNP
rs1333304742 4056 dbSNP
rs1414098526 4059 dbSNP
rs1418517982 4062 dbSNP
rs1180364409 4077 dbSNP
rs1414459500 4079 dbSNP
rs74764444 4081 dbSNP
rs1172901911 4088 dbSNP
rs1347863549 4089 dbSNP
rs79063946 4091 dbSNP
rs78487426 4092 dbSNP
rs1478191904 4093 dbSNP
rs1293984214 4096 dbSNP
rs1008781363 4104 dbSNP
rs1040620666 4104 dbSNP
rs1232247256 4104 dbSNP
rs796955403 4104 dbSNP
rs889077302 4104 dbSNP
rs1293092644 4106 dbSNP
rs1423475021 4106 dbSNP
rs1192167867 4107 dbSNP
rs1247642040 4112 dbSNP
rs1486964360 4113 dbSNP
rs772042986 4115 dbSNP
rs1203084728 4132 dbSNP
rs1209933101 4132 dbSNP
rs1480386863 4132 dbSNP
rs1483523584 4136 dbSNP
rs1050409560 4148 dbSNP
rs745851566 4149 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HEK293S
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in GSM1084065. RNA binding protein: AGO2. Condition:CLIP_emetine_AbnovaAb HITS-CLIP data was present in GSM1084066. RNA binding protein: AGO2. Condition:CLIP_noemetine_SantaCruzAb HITS-CLIP data was present in GSM1084069. RNA binding protein: AGO2. Condition:CLIP_emetine_SigmaAb HITS-CLIP data was present in GSM1084078. RNA binding protein: AGO2. Condition:CLIP_nohippuristanol_rep2_AbnovaAb HITS-CLIP data was present in GSM1084079. RNA binding protein: AGO2. Condition:CLIP_hippuristanol_rep2_AbnovaAb ...

- Karginov FV; Hannon GJ, 2013, Genes & development.

Article - Karginov FV; Hannon GJ
- Genes & development, 2013
When adapting to environmental stress, cells attenuate and reprogram their translational output. In part, these altered translation profiles are established through changes in the interactions between RNA-binding proteins and mRNAs. The Argonaute 2 (Ago2)/microRNA (miRNA) machinery has been shown to participate in stress-induced translational up-regulation of a particular mRNA, CAT-1; however, a detailed, transcriptome-wide understanding of the involvement of Ago2 in the process has been lacking. Here, we profiled the overall changes in Ago2-mRNA interactions upon arsenite stress by cross-linking immunoprecipitation (CLIP) followed by high-throughput sequencing (CLIP-seq). Ago2 displayed a significant remodeling of its transcript occupancy, with the majority of 3' untranslated region (UTR) and coding sequence (CDS) sites exhibiting stronger interaction. Interestingly, target sites that were destined for release from Ago2 upon stress were depleted in miRNA complementarity signatures, suggesting an alternative mode of interaction. To compare the changes in Ago2-binding patterns across transcripts with changes in their translational states, we measured mRNA profiles on ribosome/polysome gradients by RNA sequencing (RNA-seq). Increased Ago2 occupancy correlated with stronger repression of translation for those mRNAs, as evidenced by a shift toward lighter gradient fractions upon stress, while release of Ago2 was associated with the limited number of transcripts that remained translated. Taken together, these data point to a role for Ago2 and the mammalian miRNAs in mediating the translational component of the stress response.
LinkOut: [PMID: 23824327]
CLIP-seq Support 1 for dataset GSM1084065
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_emetine_AbnovaAb
Location of target site ENST00000261441.5 | 3UTR | GGCAAAAAAAAAAAA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM1084066
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_noemetine_SantaCruzAb
Location of target site ENST00000261441.5 | 3UTR | AUAGGCAAAAAAAAAAAA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
CLIP-seq Support 3 for dataset GSM1084069
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_emetine_SigmaAb
Location of target site ENST00000261441.5 | 3UTR | UAGGCAAAAAAAAAAAAAAAU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
CLIP-seq Support 4 for dataset GSM1084078
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_nohippuristanol_rep2_AbnovaAb
Location of target site ENST00000261441.5 | 3UTR | AUAGGCAAAAAAAAAAAAAAAU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
CLIP-seq Support 5 for dataset GSM1084079
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_hippuristanol_rep2_AbnovaAb
Location of target site ENST00000261441.5 | 3UTR | GGCAAAAAAAAAAAAAAAU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
75 hsa-miR-3152-5p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT092535 KBTBD8 kelch repeat and BTB domain containing 8 2 6
MIRT461731 NDUFA2 NADH:ubiquinone oxidoreductase subunit A2 2 2
MIRT468456 SET SET nuclear proto-oncogene 2 2
MIRT482192 AHR aryl hydrocarbon receptor 2 2
MIRT507923 BZW1 basic leucine zipper and W2 domains 1 2 4
MIRT512208 C18orf25 chromosome 18 open reading frame 25 2 6
MIRT526238 STARD4 StAR related lipid transfer domain containing 4 2 2
MIRT536131 MAPK14 mitogen-activated protein kinase 14 2 2
MIRT536280 LIMA1 LIM domain and actin binding 1 2 2
MIRT544251 LRIF1 ligand dependent nuclear receptor interacting factor 1 2 2
MIRT548054 GOLGA7 golgin A7 2 2
MIRT563443 ISCA1 iron-sulfur cluster assembly 1 2 2
MIRT565643 SIX4 SIX homeobox 4 2 2
MIRT614870 PDE12 phosphodiesterase 12 2 2
MIRT614923 MARCH6 membrane associated ring-CH-type finger 6 2 2
MIRT615793 FAM124A family with sequence similarity 124 member A 2 2
MIRT618557 VLDLR very low density lipoprotein receptor 2 2
MIRT622147 SORBS2 sorbin and SH3 domain containing 2 2 2
MIRT622390 RSBN1 round spermatid basic protein 1 2 2
MIRT624185 DDX19B DEAD-box helicase 19B 2 2
MIRT624448 CALCOCO2 calcium binding and coiled-coil domain 2 2 2
MIRT625340 TAPBP TAP binding protein 2 2
MIRT625370 IRGQ immunity related GTPase Q 2 2
MIRT627276 WSB1 WD repeat and SOCS box containing 1 2 2
MIRT627746 RAD54L2 RAD54 like 2 2 2
MIRT629578 RFC2 replication factor C subunit 2 2 4
MIRT630537 LGALS8 galectin 8 2 4
MIRT630559 C3orf36 chromosome 3 open reading frame 36 2 4
MIRT630568 SOWAHA sosondowah ankyrin repeat domain family member A 2 4
MIRT630763 MSANTD3 Myb/SANT DNA binding domain containing 3 2 2
MIRT635424 LRP10 LDL receptor related protein 10 2 2
MIRT636011 GNPNAT1 glucosamine-phosphate N-acetyltransferase 1 2 2
MIRT636337 PHAX phosphorylated adaptor for RNA export 2 2
MIRT638413 POU3F2 POU class 3 homeobox 2 2 2
MIRT639358 INIP INTS3 and NABP interacting protein 2 2
MIRT642124 DYRK1A dual specificity tyrosine phosphorylation regulated kinase 1A 2 4
MIRT642828 KIAA0319 KIAA0319 2 2
MIRT644017 NUCB1 nucleobindin 1 2 2
MIRT644038 WWC2 WW and C2 domain containing 2 2 2
MIRT644153 GIN1 gypsy retrotransposon integrase 1 2 2
MIRT644649 SNX9 sorting nexin 9 2 2
MIRT645798 OMA1 OMA1 zinc metallopeptidase 2 2
MIRT647633 FAIM2 Fas apoptotic inhibitory molecule 2 2 2
MIRT648528 KIAA1143 KIAA1143 2 2
MIRT648851 PDLIM3 PDZ and LIM domain 3 2 2
MIRT648880 TUBGCP5 tubulin gamma complex associated protein 5 2 2
MIRT650777 TNFRSF10A TNF receptor superfamily member 10a 2 2
MIRT654200 RNF19B ring finger protein 19B 2 2
MIRT654508 RAB5B RAB5B, member RAS oncogene family 2 2
MIRT655249 PEX26 peroxisomal biogenesis factor 26 2 2
MIRT656089 MTA3 metastasis associated 1 family member 3 2 2
MIRT656599 LRRC55 leucine rich repeat containing 55 2 2
MIRT659194 CYBB cytochrome b-245 beta chain 2 2
MIRT660000 C1orf115 chromosome 1 open reading frame 115 2 4
MIRT661715 KLF8 Kruppel like factor 8 2 2
MIRT661813 PRPSAP1 phosphoribosyl pyrophosphate synthetase associated protein 1 2 2
MIRT668360 FGD4 FYVE, RhoGEF and PH domain containing 4 2 2
MIRT679734 CABP4 calcium binding protein 4 2 2
MIRT708616 NUDT18 nudix hydrolase 18 2 2
MIRT709034 TROVE2 TROVE domain family member 2 2 2
MIRT709573 DMGDH dimethylglycine dehydrogenase 2 2
MIRT709665 AJAP1 adherens junctions associated protein 1 2 2
MIRT709874 TRAF1 TNF receptor associated factor 1 2 2
MIRT710821 NLRP12 NLR family pyrin domain containing 12 2 2
MIRT710883 PARL presenilin associated rhomboid like 2 2
MIRT711547 LCAT lecithin-cholesterol acyltransferase 2 2
MIRT712017 STX1B syntaxin 1B 2 2
MIRT713058 BLVRA biliverdin reductase A 2 2
MIRT713129 THRB thyroid hormone receptor beta 2 2
MIRT713878 MOB3A MOB kinase activator 3A 2 2
MIRT714154 NXPH3 neurexophilin 3 2 2
MIRT719755 FLYWCH1 FLYWCH-type zinc finger 1 2 2
MIRT720213 KCNK1 potassium two pore domain channel subfamily K member 1 2 2
MIRT722728 BRMS1 breast cancer metastasis suppressor 1 2 2
MIRT725652 ABI2 abl interactor 2 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-3152-5p Palbociclib 5330286 NSC758247 approved resistant cell line (T47D)
hsa-miR-3152-5p Palbociclib 5330286 NSC758247 approved resistant tissue (breast cancer)

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