pre-miRNA Information
pre-miRNA hsa-mir-1273h   
Genomic Coordinates chr16: 24203116 - 24203231
Description Homo sapiens miR-1273h stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-1273h-5p
Sequence 33| CUGGGAGGUCAAGGCUGCAGU |53
Evidence Experimental
Experiments Illumina
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1028034199 14 dbSNP
rs542383563 18 dbSNP
Putative Targets

miRNA Expression profile
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol NUDT19   
Synonyms RP2
Description nudix hydrolase 19
Transcript NM_001105570   
Expression
Putative miRNA Targets on NUDT19
3'UTR of NUDT19
(miRNA target sites are highlighted)
>NUDT19|NM_001105570|3'UTR
   1 GGTGCTTAAGCTTGTTTGTAAAATGGCCTACTTGAAGTCCTCATGAATAATGAGGGTTGACTTTCATTTGCTTGAAACTT
  81 AAGGAAGTTTGTGCCTATAAAAGTTACTGCAATTCAGTATTTCTTTATTTTTTTCGAGACAGAGTCTCAATCTGTCGCCC
 161 AGGCTGGAGTGCAGTGGCATGATATAGGCTCACTGGAAGCTCTGCCTCAGGGGTTCATGCCATTCTCCTGCCTCAGCCTC
 241 CCGAGTAGCTGGGACTACAGGCGCCCGCCACCATGCCCAGCTAATTTTTTTTTGTATTTTTAGTAGAGACGGGTTTTCAC
 321 CGTGTTAGCCAGGATGGTCTCAATCTCTTGACCTCGTGATACGCCCGCCTTGGCCTCCCAAAGTGCTGGGATTACAGGTG
 401 TGGGCCACCACACCCAGCCTTTTTTTTTTTTTTTTTTTTTTTTTTTGAGACAGAGTGTCTCACTCTTGCCCAGAACCCAG
 481 GCTGGAGTGCAGTGGCCCAATCTCGGCTCACTGCAACCTCCACCTCCCAGGTTCCAGCGATTCTCATGCCTCAGCCTCCT
 561 GAGTAGCTGGGACTATAGGCATGCACCACCATGCCCCACTAAATTTTGTATTTTTAGTAGAAACAGAGTTTCACCATGTT
 641 GGCCAGGCTGGTCTCGATCTCCTGACCTCATGATCTGCCCGCCTTGGCCTCCCAAAGTGTGGGATTACAGGCGTGAGCCA
 721 CTGTGCCCAGCATGGTGTTTCTTATATCAGGTGTTTTAGGGAGCTCGCTTGCTTATTCCATTCTTTAATCCTTACAGTGT
 801 GCCACACGTATAAAGTTTATAACGTATTAATGATCTCATTACCCAAAACCAGAACATAATTTCACAAGGGTTCCTACTTC
 881 TGTATTGTTTTATTATCTCAAAAATTTAAATAACATGTTCTGCTGTTTATTGTTCTTGTTATCCACTGTATTAGCACCTT
 961 CCCTGATGTGCTTTGGAGGTTGATCAATGAATTTCTGAGACTTTCTGCTGGAATTACTTTAAGGGTGTCTTATTAGATGA
1041 TGAAAAGTTGGCTGAGACACCCTTCAAGTGACCATGTCATTGTTTTCTTGCTATGTCTTTAGCTTAATGATTAAGATACA
1121 ATTCTTTTTAAAATCAAATGGTATTAGTTATTATGTTTCCCAAATTAGAAATCGATTTTAGTTAACATTTTATTTTATTT
1201 TATTCTATTTTATTTATTTTTGAGACAGAGTCTCGCTCTGTTGCCCAGGCTGGAGTACAATGGCGCAATCTCAGCTCACT
1281 CCAATCTCCGCCTCCCAGGTTCAAGCGATTTTTCTGCCTCAGCCTCCCGAGTAGCTGGGATTACAGGCACCCACTACCAT
1361 GCCCAGCTAATCTTTGTATTTTTAGTAGAGACGGGGTTTCACCATGTTGGCCAGTCCGGTCTCGAACTTCTGACCTGAGG
1441 TGATCTGCCCACCTTGGCCTCACAAAGTGCTGAGATTACAGGCTTGAGCCACCACGCCTGGCCTAGTTAGCATTTTAAAG
1521 AAACACAAAGCCATAACAAAAACCATCATTGTTTGTATTCCACACTGTTAATGAATGTAAAGAGGTTAGAAATGTAGTGT
1601 TTGATTAATGATGTTTATTTTTACTGTATTTAATATGAGTAATTTTTCATCATCTTTCAAGAGGAATAATGTTTATTGAT
1681 TAAAGGTGAGAAATGATAGTTAAGACACCAATTCCATGTCCAGATCTTTGACTGTATCATGCATTGTACAATTGATTTCA
1761 TATTTTATGAAATGCCTTAATTTTCCTACTATAACATAAAGACAATGATGAATAAAGTTTATGTGTATGATTAAATCCAA
1841 AAAAAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' ugAC-GUCGGAACUGGAGGGUc 5'
            || | ||||||:||||||| 
Target 5' tcTGCCCGCCTTGGCCTCCCAa 3'
674 - 695 175.00 -31.10
2
miRNA  3' ugacGUCGGAACUGGAGGGUc 5'
              | ||||||:||||||| 
Target 5' acgcCCGCCTTGGCCTCCCAa 3'
361 - 381 173.00 -26.60
3
miRNA  3' ugACGUCGGAACUGGAGGGUc 5'
            |||| |||  |||||||| 
Target 5' acTGCAACCTCCACCTCCCAg 3'
510 - 530 171.00 -30.00
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN30487482 40 COSMIC
COSN31510432 43 COSMIC
COSN30183952 56 COSMIC
COSN31496239 94 COSMIC
COSN6552349 104 COSMIC
COSN30129973 179 COSMIC
COSN19072293 333 COSMIC
COSN5851031 394 COSMIC
COSN25733615 671 COSMIC
COSN6668232 694 COSMIC
COSN6142761 785 COSMIC
COSN17370908 808 COSMIC
COSN7124501 1711 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs115755459 1 dbSNP
rs769519938 2 dbSNP
rs1307782217 3 dbSNP
rs1375972001 4 dbSNP
rs775246374 5 dbSNP
rs762691035 22 dbSNP
rs1310088285 23 dbSNP
rs201193563 29 dbSNP
rs774208282 33 dbSNP
rs905045652 35 dbSNP
rs760684011 38 dbSNP
rs766469623 40 dbSNP
rs754076654 43 dbSNP
rs1240019168 48 dbSNP
rs1470350007 53 dbSNP
rs1320000125 55 dbSNP
rs1341868913 61 dbSNP
rs556918794 67 dbSNP
rs941750267 92 dbSNP
rs1277250542 104 dbSNP
rs1302998952 120 dbSNP
rs1324104776 120 dbSNP
rs1386944331 124 dbSNP
rs1369763427 135 dbSNP
rs567527522 136 dbSNP
rs1034844883 137 dbSNP
rs938363428 151 dbSNP
rs1401740905 156 dbSNP
rs1056691310 158 dbSNP
rs1460553070 168 dbSNP
rs1379392452 175 dbSNP
rs372346678 175 dbSNP
rs1254155449 178 dbSNP
rs146280553 186 dbSNP
rs1012526551 195 dbSNP
rs1251368684 200 dbSNP
rs1191578011 201 dbSNP
rs1004919495 205 dbSNP
rs1045209467 209 dbSNP
rs374674742 219 dbSNP
rs1014878500 224 dbSNP
rs963313881 231 dbSNP
rs1195117444 235 dbSNP
rs574585979 236 dbSNP
rs1373438586 238 dbSNP
rs182846641 243 dbSNP
rs922154235 244 dbSNP
rs148480559 251 dbSNP
rs1414588824 259 dbSNP
rs988079478 260 dbSNP
rs912063348 263 dbSNP
rs935078541 264 dbSNP
rs541103665 265 dbSNP
rs538938471 267 dbSNP
rs914925614 268 dbSNP
rs558226912 272 dbSNP
rs1303558860 274 dbSNP
rs748137416 275 dbSNP
rs1160620422 277 dbSNP
rs1433531561 278 dbSNP
rs1441336713 284 dbSNP
rs1180782859 285 dbSNP
rs528531626 285 dbSNP
rs142636976 289 dbSNP
rs905136479 291 dbSNP
rs1277780180 295 dbSNP
rs578065216 296 dbSNP
rs1232804391 299 dbSNP
rs953415084 303 dbSNP
rs1003452769 304 dbSNP
rs543208705 311 dbSNP
rs986099665 312 dbSNP
rs1237321224 314 dbSNP
rs886905809 315 dbSNP
rs771244816 322 dbSNP
rs543953324 323 dbSNP
rs563732890 328 dbSNP
rs771950383 332 dbSNP
rs1384495709 335 dbSNP
rs1157837245 336 dbSNP
rs187746666 337 dbSNP
rs1370119375 343 dbSNP
rs1028986548 345 dbSNP
rs971782334 349 dbSNP
rs953798521 350 dbSNP
rs1254833356 353 dbSNP
rs542928001 356 dbSNP
rs1447280085 357 dbSNP
rs1283116943 362 dbSNP
rs1019539055 363 dbSNP
rs938475881 364 dbSNP
rs956832254 367 dbSNP
rs948298262 368 dbSNP
rs1432420256 374 dbSNP
rs1196273548 384 dbSNP
rs1251239793 386 dbSNP
rs1431550757 386 dbSNP
rs1378952446 390 dbSNP
rs1480576807 391 dbSNP
rs559654660 395 dbSNP
rs1157684918 400 dbSNP
rs370936742 404 dbSNP
rs1456101604 405 dbSNP
rs1460904171 407 dbSNP
rs1323219992 410 dbSNP
rs773169709 411 dbSNP
rs903993742 413 dbSNP
rs1190515088 419 dbSNP
rs1052579295 420 dbSNP
rs1172375167 420 dbSNP
rs1215241512 420 dbSNP
rs1268674291 420 dbSNP
rs1274240195 420 dbSNP
rs1326400824 420 dbSNP
rs1338756815 420 dbSNP
rs1371977559 420 dbSNP
rs1410065073 420 dbSNP
rs1438929904 420 dbSNP
rs1439892402 420 dbSNP
rs386388885 420 dbSNP
rs936861092 420 dbSNP
rs1418115641 421 dbSNP
rs796469084 423 dbSNP
rs1455344504 428 dbSNP
rs1253222508 431 dbSNP
rs1193473178 442 dbSNP
rs1467366355 446 dbSNP
rs71336952 447 dbSNP
rs1308999022 448 dbSNP
rs1319736793 449 dbSNP
rs760256810 449 dbSNP
rs1287744771 450 dbSNP
rs1437731278 451 dbSNP
rs892525335 457 dbSNP
rs528055998 458 dbSNP
rs1261289517 463 dbSNP
rs1488127488 467 dbSNP
rs551137084 474 dbSNP
rs1302870074 481 dbSNP
rs1233310845 486 dbSNP
rs1368456019 490 dbSNP
rs1299847830 495 dbSNP
rs1030739098 496 dbSNP
rs571310896 498 dbSNP
rs1490394547 500 dbSNP
rs191259292 501 dbSNP
rs1395310071 502 dbSNP
rs946438331 505 dbSNP
rs980877452 507 dbSNP
rs963177410 509 dbSNP
rs374113651 511 dbSNP
rs1410676967 512 dbSNP
rs182685924 519 dbSNP
rs1480626394 522 dbSNP
rs1231670556 523 dbSNP
rs1026177378 527 dbSNP
rs1161887450 529 dbSNP
rs187420283 530 dbSNP
rs992627942 531 dbSNP
rs915528832 532 dbSNP
rs1308941112 535 dbSNP
rs1224114959 536 dbSNP
rs565081137 539 dbSNP
rs1277628744 540 dbSNP
rs1416102252 542 dbSNP
rs1375465342 544 dbSNP
rs1167388374 547 dbSNP
rs1368205812 550 dbSNP
rs948416975 553 dbSNP
rs1450115929 561 dbSNP
rs1303302448 562 dbSNP
rs760745017 563 dbSNP
rs980967613 566 dbSNP
rs886953865 567 dbSNP
rs1378360965 574 dbSNP
rs1394031453 577 dbSNP
rs1299574494 581 dbSNP
rs1344556457 584 dbSNP
rs1229468181 586 dbSNP
rs766508971 590 dbSNP
rs925552016 592 dbSNP
rs776997611 593 dbSNP
rs536519255 595 dbSNP
rs1190637604 597 dbSNP
rs1038149361 617 dbSNP
rs1367866351 618 dbSNP
rs1405773399 623 dbSNP
rs899283672 628 dbSNP
rs1348680203 629 dbSNP
rs192217755 631 dbSNP
rs566816107 633 dbSNP
rs1029411860 636 dbSNP
rs1307835215 637 dbSNP
rs1320972807 642 dbSNP
rs1242530849 649 dbSNP
rs768635082 652 dbSNP
rs535005722 656 dbSNP
rs1235015408 657 dbSNP
rs1355991215 661 dbSNP
rs1019171597 662 dbSNP
rs956926458 663 dbSNP
rs933366003 664 dbSNP
rs1249229719 671 dbSNP
rs1051858328 672 dbSNP
rs150973873 676 dbSNP
rs1177238397 677 dbSNP
rs1417757493 679 dbSNP
rs578009481 681 dbSNP
rs543572337 682 dbSNP
rs1016303440 684 dbSNP
rs1423684736 686 dbSNP
rs1246002806 692 dbSNP
rs34609661 694 dbSNP
rs1163363706 695 dbSNP
rs766800206 700 dbSNP
rs776666151 709 dbSNP
rs967826928 713 dbSNP
rs1026560355 715 dbSNP
rs1308699031 716 dbSNP
rs1295891111 722 dbSNP
rs959908637 735 dbSNP
rs557097359 736 dbSNP
rs573879610 745 dbSNP
rs1163329435 762 dbSNP
rs1463608881 763 dbSNP
rs140501115 767 dbSNP
rs1212776882 768 dbSNP
rs978379051 770 dbSNP
rs1397118806 774 dbSNP
rs1195274090 785 dbSNP
rs1444643024 790 dbSNP
rs925659912 792 dbSNP
rs1378608616 796 dbSNP
rs939000408 798 dbSNP
rs992502355 802 dbSNP
rs1226041660 804 dbSNP
rs184657087 808 dbSNP
rs939927412 809 dbSNP
rs11879169 813 dbSNP
rs1324503599 820 dbSNP
rs1393682138 821 dbSNP
rs145422700 824 dbSNP
rs1297751844 825 dbSNP
rs558848652 831 dbSNP
rs1460474617 835 dbSNP
rs1397135431 857 dbSNP
rs1174448661 860 dbSNP
rs1343777555 869 dbSNP
rs1050505208 871 dbSNP
rs1254892856 873 dbSNP
rs1420866795 876 dbSNP
rs1194739618 885 dbSNP
rs1251148561 885 dbSNP
rs943458887 888 dbSNP
rs889135876 889 dbSNP
rs1282045743 890 dbSNP
rs1037704682 891 dbSNP
rs1482010736 908 dbSNP
rs1008924246 913 dbSNP
rs1346661807 923 dbSNP
rs1273489619 925 dbSNP
rs1180599098 931 dbSNP
rs1019352537 933 dbSNP
rs147672246 939 dbSNP
rs1009817823 942 dbSNP
rs1022472189 945 dbSNP
rs1445796431 946 dbSNP
rs753055514 947 dbSNP
rs1306848011 948 dbSNP
rs35519241 953 dbSNP
rs1377314429 956 dbSNP
rs1434392050 958 dbSNP
rs1373856278 969 dbSNP
rs1388720923 972 dbSNP
rs1411851302 982 dbSNP
rs1171472532 987 dbSNP
rs1455089530 988 dbSNP
rs1364324515 1000 dbSNP
rs1180937053 1002 dbSNP
rs1358620039 1002 dbSNP
rs1259048730 1022 dbSNP
rs1188015096 1025 dbSNP
rs895616227 1028 dbSNP
rs1275988244 1030 dbSNP
rs1464653569 1052 dbSNP
rs1002372887 1053 dbSNP
rs1207276720 1054 dbSNP
rs1014102927 1055 dbSNP
rs550422809 1061 dbSNP
rs1260689970 1064 dbSNP
rs560991501 1069 dbSNP
rs1383387666 1080 dbSNP
rs960717375 1083 dbSNP
rs1294047120 1087 dbSNP
rs991867321 1089 dbSNP
rs1338930354 1090 dbSNP
rs1434292575 1098 dbSNP
rs762500693 1101 dbSNP
rs1402253866 1113 dbSNP
rs1295061285 1117 dbSNP
rs1363885693 1118 dbSNP
rs1158099540 1124 dbSNP
rs1032605733 1125 dbSNP
rs1419922137 1136 dbSNP
rs1300220689 1142 dbSNP
rs57011371 1155 dbSNP
rs1211562692 1156 dbSNP
rs988773385 1162 dbSNP
rs973928675 1172 dbSNP
rs764580128 1175 dbSNP
rs914169080 1187 dbSNP
rs546866445 1188 dbSNP
rs751184102 1193 dbSNP
rs932480211 1208 dbSNP
rs1208713903 1217 dbSNP
rs1274279617 1217 dbSNP
rs113035598 1226 dbSNP
rs1354277170 1227 dbSNP
rs1272177421 1235 dbSNP
rs1431795886 1236 dbSNP
rs910752017 1238 dbSNP
rs910669083 1239 dbSNP
rs1432626335 1251 dbSNP
rs1396618539 1254 dbSNP
rs1326445038 1256 dbSNP
rs943429102 1261 dbSNP
rs1411051053 1262 dbSNP
rs1187309299 1264 dbSNP
rs1037800948 1265 dbSNP
rs538568744 1266 dbSNP
rs1040435209 1273 dbSNP
rs1470058623 1284 dbSNP
rs551719514 1290 dbSNP
rs1213569795 1291 dbSNP
rs1450357325 1292 dbSNP
rs1275260106 1294 dbSNP
rs1009829126 1295 dbSNP
rs1215223181 1300 dbSNP
rs780598435 1307 dbSNP
rs373745593 1308 dbSNP
rs1372864476 1309 dbSNP
rs1002399589 1316 dbSNP
rs1435733196 1319 dbSNP
rs1348035746 1327 dbSNP
rs1406945811 1330 dbSNP
rs1048079596 1331 dbSNP
rs1318541139 1332 dbSNP
rs188956342 1348 dbSNP
rs1455879248 1349 dbSNP
rs1396108309 1351 dbSNP
rs1190951431 1368 dbSNP
rs960521362 1383 dbSNP
rs34870938 1389 dbSNP
rs1235095662 1392 dbSNP
rs573836662 1393 dbSNP
rs536444240 1394 dbSNP
rs999863062 1403 dbSNP
rs553153705 1405 dbSNP
rs1348848794 1407 dbSNP
rs973981002 1415 dbSNP
rs1303957983 1418 dbSNP
rs919868419 1419 dbSNP
rs954088458 1424 dbSNP
rs1029764962 1425 dbSNP
rs1327945356 1435 dbSNP
rs573442473 1436 dbSNP
rs985346665 1438 dbSNP
rs1282829890 1445 dbSNP
rs34201346 1447 dbSNP
rs35512135 1448 dbSNP
rs71336953 1448 dbSNP
rs72542966 1448 dbSNP
rs397774093 1450 dbSNP
rs193147286 1451 dbSNP
rs964879738 1454 dbSNP
rs1178242362 1470 dbSNP
rs1472535233 1496 dbSNP
rs1249781446 1497 dbSNP
rs944809251 1512 dbSNP
rs1190139081 1529 dbSNP
rs1486160779 1533 dbSNP
rs973462044 1534 dbSNP
rs1209181887 1548 dbSNP
rs1310167094 1550 dbSNP
rs567249835 1552 dbSNP
rs138981459 1562 dbSNP
rs757806817 1565 dbSNP
rs1416082510 1578 dbSNP
rs1043726805 1591 dbSNP
rs1430070086 1597 dbSNP
rs1187609276 1599 dbSNP
rs917270992 1603 dbSNP
rs1472330309 1620 dbSNP
rs1446328028 1638 dbSNP
rs1157058596 1647 dbSNP
rs1160265802 1649 dbSNP
rs904132777 1650 dbSNP
rs949962808 1651 dbSNP
rs1410017217 1661 dbSNP
rs1410395773 1664 dbSNP
rs748967689 1665 dbSNP
rs1255768142 1672 dbSNP
rs564868387 1672 dbSNP
rs1061686 1682 dbSNP
rs1347960584 1687 dbSNP
rs544256020 1700 dbSNP
rs560965114 1712 dbSNP
rs1328476065 1715 dbSNP
rs1013301784 1718 dbSNP
rs1303420362 1719 dbSNP
rs1054243411 1721 dbSNP
rs1226309754 1730 dbSNP
rs1363625485 1733 dbSNP
rs149004903 1744 dbSNP
rs1010439103 1748 dbSNP
rs772330584 1753 dbSNP
rs995165148 1757 dbSNP
rs546778788 1768 dbSNP
rs1224841105 1774 dbSNP
rs780268056 1779 dbSNP
rs1368008593 1781 dbSNP
rs1026602996 1794 dbSNP
rs1162743793 1796 dbSNP
rs1289604298 1802 dbSNP
rs1357834487 1803 dbSNP
rs1224970217 1815 dbSNP
rs1188973369 1816 dbSNP
rs778604489 1822 dbSNP
rs954029364 1823 dbSNP
rs1246137340 1826 dbSNP
rs1215533071 1829 dbSNP
rs1488755943 1830 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HEK293S
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in GSM1084044. RNA binding protein: AGO2. Condition:CLIP_noarsenite_rep3 HITS-CLIP data was present in GSM1084064. RNA binding protein: AGO2. Condition:CLIP_noemetine_AbnovaAb HITS-CLIP data was present in GSM1084067. RNA binding protein: AGO2. Condition:CLIP_emetine_SantaCruzAb HITS-CLIP data was present in GSM1084068. RNA binding protein: AGO2. Condition:CLIP_noemetine_SigmaAb HITS-CLIP data was present in GSM1084072. RNA binding protein: AGO2. Condition:CLIP_nohippuristanol_rep1_AbnovaAb HITS-CLIP data was present in GSM1084073. RNA binding protein: AGO2. Condition:CLIP_hippuristanol_rep1_AbnovaAb HITS-CLIP data was present in GSM1084076. RNA binding protein: AGO2. Condition:CLIP_nohippuristanol_rep1_SigmaAb HITS-CLIP data was present in GSM1084078. RNA binding protein: AGO2. Condition:CLIP_nohippuristanol_rep2_AbnovaAb HITS-CLIP data was present in GSM1084079. RNA binding protein: AGO2. Condition:CLIP_hippuristanol_rep2_AbnovaAb ...

- Karginov FV; Hannon GJ, 2013, Genes & development.

Article - Karginov FV; Hannon GJ
- Genes & development, 2013
When adapting to environmental stress, cells attenuate and reprogram their translational output. In part, these altered translation profiles are established through changes in the interactions between RNA-binding proteins and mRNAs. The Argonaute 2 (Ago2)/microRNA (miRNA) machinery has been shown to participate in stress-induced translational up-regulation of a particular mRNA, CAT-1; however, a detailed, transcriptome-wide understanding of the involvement of Ago2 in the process has been lacking. Here, we profiled the overall changes in Ago2-mRNA interactions upon arsenite stress by cross-linking immunoprecipitation (CLIP) followed by high-throughput sequencing (CLIP-seq). Ago2 displayed a significant remodeling of its transcript occupancy, with the majority of 3' untranslated region (UTR) and coding sequence (CDS) sites exhibiting stronger interaction. Interestingly, target sites that were destined for release from Ago2 upon stress were depleted in miRNA complementarity signatures, suggesting an alternative mode of interaction. To compare the changes in Ago2-binding patterns across transcripts with changes in their translational states, we measured mRNA profiles on ribosome/polysome gradients by RNA sequencing (RNA-seq). Increased Ago2 occupancy correlated with stronger repression of translation for those mRNAs, as evidenced by a shift toward lighter gradient fractions upon stress, while release of Ago2 was associated with the limited number of transcripts that remained translated. Taken together, these data point to a role for Ago2 and the mammalian miRNAs in mediating the translational component of the stress response.
LinkOut: [PMID: 23824327]
CLIP-seq Support 1 for dataset GSM1084044
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_noarsenite_rep3
Location of target site ENST00000218340.3 | 3UTR | CAAAGAGCUGGGAUUACAGGUGUGAGC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM1084064
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_noemetine_AbnovaAb
Location of target site ENST00000218340.3 | 3UTR | CAAAGAGCUGGGAUUACAGGUGU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
CLIP-seq Support 3 for dataset GSM1084067
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_emetine_SantaCruzAb
Location of target site ENST00000218340.3 | 3UTR | CAAAGAGCUGGGAUUACAGGUG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
CLIP-seq Support 4 for dataset GSM1084068
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_noemetine_SigmaAb
Location of target site ENST00000218340.3 | 3UTR | CAAAGAGCUGGGAUUACAGG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
CLIP-seq Support 5 for dataset GSM1084072
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_nohippuristanol_rep1_AbnovaAb
Location of target site ENST00000218340.3 | 3UTR | CAAAGAGCUGGGAUUACAGGUGU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
CLIP-seq Support 6 for dataset GSM1084073
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_hippuristanol_rep1_AbnovaAb
Location of target site ENST00000218340.3 | 3UTR | CAAAGAGCUGGGAUUACAGGU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
CLIP-seq Support 7 for dataset GSM1084076
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_nohippuristanol_rep1_SigmaAb
Location of target site ENST00000218340.3 | 3UTR | CAAAGAGCUGGGAUUACAGGU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
CLIP-seq Support 8 for dataset GSM1084078
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_nohippuristanol_rep2_AbnovaAb
Location of target site ENST00000218340.3 | 3UTR | CAAAGAGCUGGGAUUACAGGUGU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
CLIP-seq Support 9 for dataset GSM1084079
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_hippuristanol_rep2_AbnovaAb
Location of target site ENST00000218340.3 | 3UTR | AAAGAGCUGGGAUUACAGGUGU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
494 hsa-miR-1273h-5p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT074355 TNRC6A trinucleotide repeat containing 6A 2 2
MIRT100721 TJAP1 tight junction associated protein 1 2 2
MIRT115545 MAZ MYC associated zinc finger protein 2 2
MIRT124982 XIAP X-linked inhibitor of apoptosis 2 4
MIRT139911 BTF3L4 basic transcription factor 3 like 4 2 6
MIRT177183 ARL5B ADP ribosylation factor like GTPase 5B 2 4
MIRT187994 MBD6 methyl-CpG binding domain protein 6 2 2
MIRT207410 MAT2A methionine adenosyltransferase 2A 2 6
MIRT241928 DYRK2 dual specificity tyrosine phosphorylation regulated kinase 2 2 2
MIRT260110 KLHL21 kelch like family member 21 2 2
MIRT260358 XRCC6 X-ray repair cross complementing 6 2 6
MIRT266428 RPRD2 regulation of nuclear pre-mRNA domain containing 2 2 2
MIRT294663 ZNF548 zinc finger protein 548 2 2
MIRT351039 PLEKHB2 pleckstrin homology domain containing B2 2 2
MIRT379943 PRRG4 proline rich and Gla domain 4 2 2
MIRT398983 KAT7 lysine acetyltransferase 7 2 2
MIRT441465 BEST3 bestrophin 3 2 2
MIRT446750 ZNF491 zinc finger protein 491 2 2
MIRT449224 RAD51B RAD51 paralog B 2 2
MIRT450623 AQR aquarius intron-binding spliceosomal factor 2 2
MIRT451090 ZNF584 zinc finger protein 584 2 2
MIRT451558 CIAPIN1 cytokine induced apoptosis inhibitor 1 2 2
MIRT451736 CES3 carboxylesterase 3 2 2
MIRT452411 QDPR quinoid dihydropteridine reductase 2 2
MIRT452559 ZFP69B ZFP69 zinc finger protein B 2 2
MIRT452851 LAX1 lymphocyte transmembrane adaptor 1 2 2
MIRT452922 DISC1 disrupted in schizophrenia 1 2 2
MIRT453043 TANGO2 transport and golgi organization 2 homolog 2 4
MIRT453097 HOXC4 homeobox C4 2 2
MIRT453297 ZNF394 zinc finger protein 394 2 2
MIRT453593 ZNF557 zinc finger protein 557 2 2
MIRT453787 KBTBD12 kelch repeat and BTB domain containing 12 2 2
MIRT453987 CECR1 adenosine deaminase 2 2 2
MIRT454083 TMEM209 transmembrane protein 209 2 2
MIRT454652 FBXL18 F-box and leucine rich repeat protein 18 2 2
MIRT454753 PFKFB3 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3 2 2
MIRT455311 TTLL9 tubulin tyrosine ligase like 9 2 2
MIRT456468 SERAC1 serine active site containing 1 2 2
MIRT456554 TOMM20 translocase of outer mitochondrial membrane 20 2 2
MIRT456716 TMEM239 transmembrane protein 239 2 4
MIRT456796 SIGLEC14 sialic acid binding Ig like lectin 14 2 2
MIRT457487 SLC35F6 solute carrier family 35 member F6 2 2
MIRT457999 MRPL12 mitochondrial ribosomal protein L12 2 2
MIRT458130 TLCD2 TLC domain containing 2 2 2
MIRT459027 ZNF490 zinc finger protein 490 2 4
MIRT459119 FADS6 fatty acid desaturase 6 2 2
MIRT459315 HAVCR2 hepatitis A virus cellular receptor 2 2 2
MIRT459385 MPLKIP M-phase specific PLK1 interacting protein 2 2
MIRT459412 FAM83B family with sequence similarity 83 member B 2 2
MIRT459974 RFT1 RFT1 homolog 2 2
MIRT460480 FAM105A family with sequence similarity 105 member A 2 6
MIRT460586 FEM1A fem-1 homolog A 2 2
MIRT460920 NOA1 nitric oxide associated 1 2 4
MIRT461072 OPA3 OPA3, outer mitochondrial membrane lipid metabolism regulator 2 2
MIRT461590 DPH2 DPH2 homolog 2 2
MIRT461854 ZNF317 zinc finger protein 317 2 2
MIRT462176 ACADL acyl-CoA dehydrogenase, long chain 2 2
MIRT462446 GCDH glutaryl-CoA dehydrogenase 2 2
MIRT463854 WNT7B Wnt family member 7B 2 2
MIRT464310 UST uronyl 2-sulfotransferase 2 2
MIRT464815 UBE2B ubiquitin conjugating enzyme E2 B 2 2
MIRT465453 TOR2A torsin family 2 member A 2 2
MIRT466073 TMEM184C transmembrane protein 184C 2 2
MIRT466514 TBXA2R thromboxane A2 receptor 2 2
MIRT467072 SRRD SRR1 domain containing 2 2
MIRT469551 RARA retinoic acid receptor alpha 2 2
MIRT469741 RAB2B RAB2B, member RAS oncogene family 2 2
MIRT470759 PNPLA6 patatin like phospholipase domain containing 6 2 2
MIRT470875 PLXND1 plexin D1 2 2
MIRT470976 PITPNA phosphatidylinositol transfer protein alpha 2 2
MIRT471048 PIM3 Pim-3 proto-oncogene, serine/threonine kinase 2 2
MIRT471215 PHAX phosphorylated adaptor for RNA export 2 2
MIRT471246 PGM2L1 phosphoglucomutase 2 like 1 2 2
MIRT471286 PGAM4 phosphoglycerate mutase family member 4 2 2
MIRT471467 PDE7B phosphodiesterase 7B 2 2
MIRT473069 MORN4 MORN repeat containing 4 2 4
MIRT473989 LRRC20 leucine rich repeat containing 20 2 2
MIRT474518 KLHDC8A kelch domain containing 8A 2 2
MIRT474990 KANSL1 KAT8 regulatory NSL complex subunit 1 2 2
MIRT475547 HNRNPUL1 heterogeneous nuclear ribonucleoprotein U like 1 2 2
MIRT476350 GIGYF1 GRB10 interacting GYF protein 1 2 2
MIRT477298 EPHB2 EPH receptor B2 2 2
MIRT477933 DPM2 dolichyl-phosphate mannosyltransferase subunit 2, regulatory 2 2
MIRT478282 DDX19A DEAD-box helicase 19A 2 4
MIRT478472 CYP20A1 cytochrome P450 family 20 subfamily A member 1 2 2
MIRT478559 CTNND1 catenin delta 1 2 2
MIRT478618 CTDNEP1 CTD nuclear envelope phosphatase 1 2 2
MIRT478834 CRISPLD2 cysteine rich secretory protein LCCL domain containing 2 2 2
MIRT479007 COL5A1 collagen type V alpha 1 chain 2 2
MIRT479166 CLSPN claspin 2 2
MIRT482454 ADAR adenosine deaminase, RNA specific 2 4
MIRT483019 KHSRP KH-type splicing regulatory protein 2 4
MIRT483798 CYP2W1 cytochrome P450 family 2 subfamily W member 1 2 6
MIRT486087 SLC7A5 solute carrier family 7 member 5 2 4
MIRT486304 SIPA1 signal-induced proliferation-associated 1 2 2
MIRT486490 MYH11 myosin heavy chain 11 2 2
MIRT486881 TSPYL4 TSPY like 4 2 2
MIRT487125 NCOR2 nuclear receptor corepressor 2 2 2
MIRT487542 TM6SF2 transmembrane 6 superfamily member 2 2 4
MIRT487676 B3GALT5 beta-1,3-galactosyltransferase 5 2 4
MIRT489251 TTLL1 tubulin tyrosine ligase like 1 2 4
MIRT489276 RBM8A RNA binding motif protein 8A 2 8
MIRT489496 CRLF3 cytokine receptor like factor 3 2 4
MIRT489571 SSBP2 single stranded DNA binding protein 2 2 2
MIRT489694 SCAMP4 secretory carrier membrane protein 4 2 2
MIRT490166 TMEM63C transmembrane protein 63C 2 2
MIRT491199 MLLT1 MLLT1, super elongation complex subunit 2 4
MIRT491260 DHX40 DEAH-box helicase 40 2 2
MIRT491385 HAUS3 HAUS augmin like complex subunit 3 2 2
MIRT491548 YAE1D1 Yae1 domain containing 1 2 2
MIRT492722 PHF12 PHD finger protein 12 2 2
MIRT493866 FAM73B mitoguardin 2 2 4
MIRT494549 BAK1 BCL2 antagonist/killer 1 2 2
MIRT498586 KRT8 keratin 8 2 2
MIRT498722 SNTN sentan, cilia apical structure protein 2 6
MIRT499982 HIST1H2BD histone cluster 1 H2B family member d 2 4
MIRT503414 SLC25A45 solute carrier family 25 member 45 2 6
MIRT508491 FTO FTO, alpha-ketoglutarate dependent dioxygenase 2 2
MIRT508877 METTL14 methyltransferase like 14 2 2
MIRT509622 RRP7A ribosomal RNA processing 7 homolog A 2 4
MIRT510104 IRAK3 interleukin 1 receptor associated kinase 3 2 8
MIRT510139 PDGFRA platelet derived growth factor receptor alpha 2 4
MIRT510353 ZNF703 zinc finger protein 703 2 6
MIRT510620 TMEM167A transmembrane protein 167A 2 4
MIRT510786 SF3B3 splicing factor 3b subunit 3 2 6
MIRT511021 NRF1 nuclear respiratory factor 1 2 2
MIRT513925 GHITM growth hormone inducible transmembrane protein 2 2
MIRT514342 DNAH17 dynein axonemal heavy chain 17 2 4
MIRT515015 SUMF2 sulfatase modifying factor 2 2 2
MIRT515246 DUSP28 dual specificity phosphatase 28 2 2
MIRT516202 RPP30 ribonuclease P/MRP subunit p30 2 2
MIRT516435 ADAMTS4 ADAM metallopeptidase with thrombospondin type 1 motif 4 2 4
MIRT516666 ZNF860 zinc finger protein 860 2 4
MIRT518373 ZNF250 zinc finger protein 250 2 2
MIRT518930 LSG1 large 60S subunit nuclear export GTPase 1 2 2
MIRT519676 ZNF70 zinc finger protein 70 2 2
MIRT519902 ZFAND4 zinc finger AN1-type containing 4 2 4
MIRT519945 ZCCHC8 zinc finger CCHC-type containing 8 2 2
MIRT520321 UBXN2A UBX domain protein 2A 2 2
MIRT520606 TMEM41B transmembrane protein 41B 2 2
MIRT520663 TMEM11 transmembrane protein 11 2 2
MIRT520852 SUGT1 SGT1 homolog, MIS12 kinetochore complex assembly cochaperone 2 2
MIRT521443 RAD51 RAD51 recombinase 2 2
MIRT521671 PRKAR2A protein kinase cAMP-dependent type II regulatory subunit alpha 2 2
MIRT522281 NKAP NFKB activating protein 2 2
MIRT522333 NCKIPSD NCK interacting protein with SH3 domain 2 8
MIRT522535 MED28 mediator complex subunit 28 2 6
MIRT523478 GNG4 G protein subunit gamma 4 2 2
MIRT523672 FOPNL FGFR1OP N-terminal like 2 2
MIRT523715 FBXW2 F-box and WD repeat domain containing 2 2 4
MIRT523867 ESCO2 establishment of sister chromatid cohesion N-acetyltransferase 2 2 4
MIRT524043 DNAJC8 DnaJ heat shock protein family (Hsp40) member C8 2 2
MIRT524167 DFFA DNA fragmentation factor subunit alpha 2 2
MIRT524928 ALG10B ALG10B, alpha-1,2-glucosyltransferase 2 2
MIRT526825 PHC1 polyhomeotic homolog 1 2 2
MIRT531017 TDGF1P3 teratocarcinoma-derived growth factor 1 pseudogene 3 2 2
MIRT536085 MBOAT2 membrane bound O-acyltransferase domain containing 2 2 2
MIRT540681 BMP3 bone morphogenetic protein 3 2 2
MIRT541708 TMEM33 transmembrane protein 33 2 2
MIRT541755 KLF8 Kruppel like factor 8 2 2
MIRT541888 LY6G5B lymphocyte antigen 6 family member G5B 2 2
MIRT545714 SPTLC2 serine palmitoyltransferase long chain base subunit 2 2 2
MIRT559054 C19orf47 chromosome 19 open reading frame 47 2 4
MIRT561748 PLAGL2 PLAG1 like zinc finger 2 2 2
MIRT562365 ETV3 ETS variant 3 2 2
MIRT562821 GCFC2 GC-rich sequence DNA-binding factor 2 2 2
MIRT562900 DNAH10OS dynein axonemal heavy chain 10 opposite strand 2 2
MIRT564452 SLC35E2 solute carrier family 35 member E2 2 5
MIRT569111 ONECUT3 one cut homeobox 3 2 2
MIRT569224 SUSD1 sushi domain containing 1 2 2
MIRT570271 ARPC3 actin related protein 2/3 complex subunit 3 2 2
MIRT570498 TFIP11 tuftelin interacting protein 11 2 2
MIRT570844 GPRC5C G protein-coupled receptor class C group 5 member C 2 2
MIRT571311 TPCN2 two pore segment channel 2 2 2
MIRT572077 EXOC8 exocyst complex component 8 2 2
MIRT572116 DNAJC24 DnaJ heat shock protein family (Hsp40) member C24 2 2
MIRT573054 TRIB1 tribbles pseudokinase 1 2 2
MIRT573483 IQSEC3 IQ motif and Sec7 domain 3 2 2
MIRT573656 HES6 hes family bHLH transcription factor 6 2 2
MIRT574343 ZBTB37 zinc finger and BTB domain containing 37 2 2
MIRT576494 Slc35e2 solute carrier family 35, member E2 2 4
MIRT608033 UBLCP1 ubiquitin like domain containing CTD phosphatase 1 2 2
MIRT611326 NANOS1 nanos C2HC-type zinc finger 1 2 2
MIRT613660 KIAA1210 KIAA1210 2 2
MIRT615638 ATF6 activating transcription factor 6 2 2
MIRT618573 RRAD RRAD, Ras related glycolysis inhibitor and calcium channel regulator 2 2
MIRT618865 MBL2 mannose binding lectin 2 2 2
MIRT618962 MRPS16 mitochondrial ribosomal protein S16 2 2
MIRT619172 SLC16A4 solute carrier family 16 member 4 2 2
MIRT620298 AQP6 aquaporin 6 2 2
MIRT620683 RFTN2 raftlin family member 2 2 2
MIRT621637 UBXN2B UBX domain protein 2B 2 2
MIRT621993 STK4 serine/threonine kinase 4 2 2
MIRT622421 NUDT19 nudix hydrolase 19 2 2
MIRT622804 PGAM5 PGAM family member 5, mitochondrial serine/threonine protein phosphatase 2 4
MIRT624786 AGAP9 ArfGAP with GTPase domain, ankyrin repeat and PH domain 9 2 2
MIRT624968 ZNF665 zinc finger protein 665 2 4
MIRT625479 SMAD9 SMAD family member 9 2 2
MIRT626594 ACAA2 acetyl-CoA acyltransferase 2 2 4
MIRT626708 TRIM65 tripartite motif containing 65 2 2
MIRT626975 LINC00598 long intergenic non-protein coding RNA 598 2 2
MIRT627489 STRIP2 striatin interacting protein 2 2 2
MIRT628505 ZNF878 zinc finger protein 878 2 2
MIRT628533 ZNF701 zinc finger protein 701 2 2
MIRT628591 TMEM251 transmembrane protein 251 2 2
MIRT628818 SLC25A34 solute carrier family 25 member 34 2 2
MIRT628896 IGSF6 immunoglobulin superfamily member 6 2 2
MIRT628958 UBE2D4 ubiquitin conjugating enzyme E2 D4 (putative) 2 2
MIRT629005 OSBPL10 oxysterol binding protein like 10 2 2
MIRT629059 KIF1C kinesin family member 1C 2 2
MIRT629192 PAPOLA poly(A) polymerase alpha 2 2
MIRT629346 TMPRSS11BNL TMPRSS11B N-terminal like, pseudogene 2 2
MIRT629447 WIZ widely interspaced zinc finger motifs 2 2
MIRT629696 XKR4 XK related 4 2 2
MIRT629737 SCD5 stearoyl-CoA desaturase 5 2 2
MIRT629896 SPATA5 spermatogenesis associated 5 2 2
MIRT629953 GLP2R glucagon like peptide 2 receptor 2 2
MIRT630023 MTL5 testis expressed metallothionein like protein 2 2
MIRT630181 TLN1 talin 1 2 2
MIRT630325 PAQR5 progestin and adipoQ receptor family member 5 2 2
MIRT630389 MYH9 myosin heavy chain 9 2 4
MIRT630695 EXTL3 exostosin like glycosyltransferase 3 2 2
MIRT631054 LINC00346 long intergenic non-protein coding RNA 346 2 2
MIRT631130 SYNJ2 synaptojanin 2 2 2
MIRT631374 COL4A3BP collagen type IV alpha 3 binding protein 2 2
MIRT631557 TRAF3IP2 TRAF3 interacting protein 2 2 2
MIRT631615 PCDHB11 protocadherin beta 11 2 2
MIRT631935 CDKAL1 CDK5 regulatory subunit associated protein 1 like 1 2 4
MIRT632109 SSR1 signal sequence receptor subunit 1 2 2
MIRT632168 CCL22 C-C motif chemokine ligand 22 2 2
MIRT632445 SGTB small glutamine rich tetratricopeptide repeat containing beta 2 2
MIRT632652 NAV1 neuron navigator 1 2 2
MIRT632688 MTMR10 myotubularin related protein 10 2 2
MIRT632828 IGF1 insulin like growth factor 1 2 2
MIRT632905 FRRS1 ferric chelate reductase 1 2 2
MIRT633027 DNAL1 dynein axonemal light chain 1 2 2
MIRT633379 FBXW8 F-box and WD repeat domain containing 8 2 2
MIRT633440 KLLN killin, p53-regulated DNA replication inhibitor 2 2
MIRT633726 BPNT1 3'(2'), 5'-bisphosphate nucleotidase 1 2 2
MIRT633832 WHAMM WAS protein homolog associated with actin, golgi membranes and microtubules 2 2
MIRT633862 ATP6V1A ATPase H+ transporting V1 subunit A 2 2
MIRT634042 NUP155 nucleoporin 155 2 2
MIRT634266 TIAL1 TIA1 cytotoxic granule associated RNA binding protein like 1 2 2
MIRT634374 RAP2B RAP2B, member of RAS oncogene family 2 2
MIRT634439 PDE7A phosphodiesterase 7A 2 2
MIRT634573 LRIG2 leucine rich repeats and immunoglobulin like domains 2 2 2
MIRT634620 TOR1AIP2 torsin 1A interacting protein 2 2 2
MIRT634693 DSEL dermatan sulfate epimerase-like 2 2
MIRT634768 CD3D CD3d molecule 2 2
MIRT635024 WWTR1 WW domain containing transcription regulator 1 2 2
MIRT635384 NHLRC2 NHL repeat containing 2 2 2
MIRT635577 TTC9C tetratricopeptide repeat domain 9C 2 2
MIRT635793 DNAJC10 DnaJ heat shock protein family (Hsp40) member C10 2 2
MIRT635837 ZNF264 zinc finger protein 264 2 2
MIRT636043 ZSCAN29 zinc finger and SCAN domain containing 29 2 4
MIRT636070 ZNF280C zinc finger protein 280C 2 2
MIRT636697 ARSK arylsulfatase family member K 2 2
MIRT637438 ZNF324B zinc finger protein 324B 2 2
MIRT637582 PLD6 phospholipase D family member 6 2 2
MIRT637672 PPM1D protein phosphatase, Mg2+/Mn2+ dependent 1D 2 2
MIRT637887 SLC19A3 solute carrier family 19 member 3 2 4
MIRT638353 RBMS2 RNA binding motif single stranded interacting protein 2 2 4
MIRT638597 HINT1 histidine triad nucleotide binding protein 1 2 2
MIRT638821 CRTAP cartilage associated protein 2 2
MIRT638871 CEP97 centrosomal protein 97 2 4
MIRT639660 PPEF2 protein phosphatase with EF-hand domain 2 2 4
MIRT640200 TIMM50 translocase of inner mitochondrial membrane 50 2 2
MIRT641592 TNS4 tensin 4 2 2
MIRT644993 POLR2J3 RNA polymerase II subunit J3 2 2
MIRT645059 UQCRQ ubiquinol-cytochrome c reductase complex III subunit VII 2 2
MIRT646948 UPK3BL uroplakin 3B like 1 2 2
MIRT647306 RPH3AL rabphilin 3A like (without C2 domains) 2 2
MIRT648300 SNRPD1 small nuclear ribonucleoprotein D1 polypeptide 2 4
MIRT649043 SLC1A2 solute carrier family 1 member 2 2 2
MIRT649884 SLFN12L schlafen family member 12 like 2 2
MIRT650196 DOCK7 dedicator of cytokinesis 7 2 2
MIRT654789 PRICKLE1 prickle planar cell polarity protein 1 2 2
MIRT655667 NUP43 nucleoporin 43 2 2
MIRT655925 NDUFA4P1 NDUFA4, mitochondrial complex associated pseudogene 1 2 2
MIRT656433 MARCH6 membrane associated ring-CH-type finger 6 2 2
MIRT657713 GPC4 glypican 4 2 2
MIRT659302 CSTF1 cleavage stimulation factor subunit 1 2 2
MIRT659844 CAPZB capping actin protein of muscle Z-line beta subunit 2 2
MIRT660660 ANKFY1 ankyrin repeat and FYVE domain containing 1 2 2
MIRT661308 CPM carboxypeptidase M 2 2
MIRT661473 CHMP1B charged multivesicular body protein 1B 2 2
MIRT661906 EBNA1BP2 EBNA1 binding protein 2 2 2
MIRT662064 ZNF284 zinc finger protein 284 2 2
MIRT662491 ANGPT4 angiopoietin 4 2 2
MIRT662657 LRRC47 leucine rich repeat containing 47 2 2
MIRT662804 MSRB2 methionine sulfoxide reductase B2 2 2
MIRT663164 FGFR1OP FGFR1 oncogene partner 2 2
MIRT663376 ZNF770 zinc finger protein 770 2 4
MIRT663418 ZNF607 zinc finger protein 607 2 2
MIRT663990 WDR75 WD repeat domain 75 2 2
MIRT664157 APOBEC3F apolipoprotein B mRNA editing enzyme catalytic subunit 3F 2 4
MIRT664489 POLR3K RNA polymerase III subunit K 2 2
MIRT665058 CCDC77 coiled-coil domain containing 77 2 2
MIRT665080 CRIPT CXXC repeat containing interactor of PDZ3 domain 2 2
MIRT665420 WDR55 WD repeat domain 55 2 2
MIRT665716 TMTC1 transmembrane and tetratricopeptide repeat containing 1 2 2
MIRT665923 TBC1D19 TBC1 domain family member 19 2 4
MIRT666239 SLC38A7 solute carrier family 38 member 7 2 4
MIRT666840 PPTC7 PTC7 protein phosphatase homolog 2 2
MIRT667378 MOB1B MOB kinase activator 1B 2 2
MIRT667573 LONRF2 LON peptidase N-terminal domain and ring finger 2 2 2
MIRT667894 ING1 inhibitor of growth family member 1 2 2
MIRT667977 HECTD3 HECT domain E3 ubiquitin protein ligase 3 2 2
MIRT668197 GCNT4 glucosaminyl (N-acetyl) transferase 4, core 2 2 2
MIRT668279 FOSL2 FOS like 2, AP-1 transcription factor subunit 2 2
MIRT668386 FAT3 FAT atypical cadherin 3 2 2
MIRT668444 FAM208A family with sequence similarity 208 member A 2 2
MIRT668998 CHORDC1 cysteine and histidine rich domain containing 1 2 2
MIRT669180 CCNF cyclin F 2 2
MIRT669444 ATL3 atlastin GTPase 3 2 2
MIRT669661 ACAP2 ArfGAP with coiled-coil, ankyrin repeat and PH domains 2 2 2
MIRT669890 KIAA0754 KIAA0754 2 4
MIRT669973 SSR3 signal sequence receptor subunit 3 2 2
MIRT670153 SLC29A4 solute carrier family 29 member 4 2 2
MIRT670240 TRIM13 tripartite motif containing 13 2 2
MIRT670274 CBY3 chibby family member 3 2 2
MIRT670358 ULBP3 UL16 binding protein 3 2 4
MIRT670627 BVES blood vessel epicardial substance 2 2
MIRT670731 HOOK3 hook microtubule tethering protein 3 2 2
MIRT670770 TRIM66 tripartite motif containing 66 2 2
MIRT670913 DESI1 desumoylating isopeptidase 1 2 2
MIRT671216 CLSTN1 calsyntenin 1 2 2
MIRT671398 ERCC6L2 ERCC excision repair 6 like 2 2 2
MIRT671427 TOX4 TOX high mobility group box family member 4 2 2
MIRT671654 TRUB2 TruB pseudouridine synthase family member 2 2 4
MIRT671702 PMPCA peptidase, mitochondrial processing alpha subunit 2 2
MIRT672136 PLEKHH1 pleckstrin homology, MyTH4 and FERM domain containing H1 2 2
MIRT672395 SLC10A6 solute carrier family 10 member 6 2 2
MIRT672508 GGCX gamma-glutamyl carboxylase 2 2
MIRT672572 RNF24 ring finger protein 24 2 2
MIRT672789 PPM1L protein phosphatase, Mg2+/Mn2+ dependent 1L 2 2
MIRT673019 RBBP4 RB binding protein 4, chromatin remodeling factor 2 2
MIRT673190 C10orf76 chromosome 10 open reading frame 76 2 2
MIRT673372 ZNF124 zinc finger protein 124 2 2
MIRT673495 MCF2L2 MCF.2 cell line derived transforming sequence-like 2 2 6
MIRT673852 CAPN7 calpain 7 2 2
MIRT673929 ZNF500 zinc finger protein 500 2 2
MIRT673986 MMAB methylmalonic aciduria (cobalamin deficiency) cblB type 2 2
MIRT674076 PLEKHA1 pleckstrin homology domain containing A1 2 2
MIRT674123 RPL7L1 ribosomal protein L7 like 1 2 2
MIRT674297 THAP5 THAP domain containing 5 2 2
MIRT674370 POLR3D RNA polymerase III subunit D 2 2
MIRT674641 NKRF NFKB repressing factor 2 2
MIRT674665 PLCE1 phospholipase C epsilon 1 2 2
MIRT674725 ZNF451 zinc finger protein 451 2 4
MIRT674779 NPR1 natriuretic peptide receptor 1 2 2
MIRT674889 RASSF9 Ras association domain family member 9 2 2
MIRT675017 SNX1 sorting nexin 1 2 2
MIRT675341 KLHL26 kelch like family member 26 2 2
MIRT675416 CLEC7A C-type lectin domain containing 7A 2 2
MIRT675497 HSD17B12 hydroxysteroid 17-beta dehydrogenase 12 2 2
MIRT675615 EHD2 EH domain containing 2 2 2
MIRT675735 AHR aryl hydrocarbon receptor 2 2
MIRT675857 ATP1B4 ATPase Na+/K+ transporting family member beta 4 2 2
MIRT675990 CRKL CRK like proto-oncogene, adaptor protein 2 2
MIRT676213 TMEM91 transmembrane protein 91 2 2
MIRT676406 MRO maestro 2 2
MIRT677299 CPSF2 cleavage and polyadenylation specific factor 2 2 2
MIRT677387 PCNP PEST proteolytic signal containing nuclear protein 2 2
MIRT677859 ABI2 abl interactor 2 2 2
MIRT677965 ITGB3 integrin subunit beta 3 2 2
MIRT678175 CRCP CGRP receptor component 2 2
MIRT678273 PTRH2 peptidyl-tRNA hydrolase 2 2 2
MIRT678665 SCUBE3 signal peptide, CUB domain and EGF like domain containing 3 2 2
MIRT679003 TTC39B tetratricopeptide repeat domain 39B 2 2
MIRT679053 RMDN1 regulator of microtubule dynamics 1 2 2
MIRT679461 RHOF ras homolog family member F, filopodia associated 2 2
MIRT679513 RAB36 RAB36, member RAS oncogene family 2 2
MIRT679914 ZKSCAN3 zinc finger with KRAB and SCAN domains 3 2 2
MIRT680029 OSBPL2 oxysterol binding protein like 2 2 4
MIRT680245 NDUFA7 NADH:ubiquinone oxidoreductase subunit A7 2 2
MIRT680279 AKIP1 A-kinase interacting protein 1 2 2
MIRT680499 PRIM2 DNA primase subunit 2 2 2
MIRT680586 ZNF573 zinc finger protein 573 2 2
MIRT680629 KIAA1456 KIAA1456 2 2
MIRT680819 ARL8B ADP ribosylation factor like GTPase 8B 2 2
MIRT680998 AAED1 AhpC/TSA antioxidant enzyme domain containing 1 2 2
MIRT681122 INTS7 integrator complex subunit 7 2 2
MIRT681161 IBA57 IBA57 homolog, iron-sulfur cluster assembly 2 2
MIRT681221 DUSP19 dual specificity phosphatase 19 2 2
MIRT681304 IKZF3 IKAROS family zinc finger 3 2 2
MIRT681341 BRI3BP BRI3 binding protein 2 2
MIRT681608 F2RL2 coagulation factor II thrombin receptor like 2 2 2
MIRT681779 EIF4A3 eukaryotic translation initiation factor 4A3 2 2
MIRT681892 SLC11A2 solute carrier family 11 member 2 2 2
MIRT682084 ITGA3 integrin subunit alpha 3 2 4
MIRT682139 SMS spermine synthase 2 2
MIRT682217 SAR1A secretion associated Ras related GTPase 1A 2 2
MIRT682367 PHACTR4 phosphatase and actin regulator 4 2 2
MIRT682535 EXOSC2 exosome component 2 2 2
MIRT682618 COX6B1 cytochrome c oxidase subunit 6B1 2 2
MIRT683643 ZNF695 zinc finger protein 695 2 2
MIRT684008 FOLR1 folate receptor 1 2 2
MIRT684442 MFSD4 major facilitator superfamily domain containing 4A 2 2
MIRT684855 ZNF749 zinc finger protein 749 2 2
MIRT684956 MINOS1 mitochondrial inner membrane organizing system 1 2 2
MIRT685044 GEMIN4 gem nuclear organelle associated protein 4 2 2
MIRT685095 DTD2 D-tyrosyl-tRNA deacylase 2 (putative) 2 2
MIRT685382 TNFRSF13C TNF receptor superfamily member 13C 2 2
MIRT685456 CACNG8 calcium voltage-gated channel auxiliary subunit gamma 8 2 2
MIRT685810 SLC27A1 solute carrier family 27 member 1 2 2
MIRT685913 MOCS3 molybdenum cofactor synthesis 3 2 2
MIRT686665 TMEM120B transmembrane protein 120B 2 2
MIRT686955 SFT2D2 SFT2 domain containing 2 2 2
MIRT687118 QPCTL glutaminyl-peptide cyclotransferase like 2 2
MIRT687739 KIAA1328 KIAA1328 2 2
MIRT688063 GLUL glutamate-ammonia ligase 2 2
MIRT688191 FNIP1 folliculin interacting protein 1 2 2
MIRT688769 CDH7 cadherin 7 2 2
MIRT688979 ATP6AP1 ATPase H+ transporting accessory protein 1 2 2
MIRT689572 NUDT7 nudix hydrolase 7 2 2
MIRT689683 TMPRSS12 transmembrane protease, serine 12 2 2
MIRT689930 MANSC1 MANSC domain containing 1 2 2
MIRT690089 PNMA2 paraneoplastic Ma antigen 2 2 2
MIRT690190 C5orf45 MRN complex interacting protein 2 2
MIRT690246 CAMLG calcium modulating ligand 2 2
MIRT690411 FAM71F2 family with sequence similarity 71 member F2 2 2
MIRT690840 DSN1 DSN1 homolog, MIS12 kinetochore complex component 2 2
MIRT690889 FUT2 fucosyltransferase 2 2 2
MIRT691107 ADIPOQ adiponectin, C1Q and collagen domain containing 2 2
MIRT691229 DFNB59 pejvakin 2 2
MIRT691300 ZNF681 zinc finger protein 681 2 2
MIRT691366 GP5 glycoprotein V platelet 2 2
MIRT691797 WARS tryptophanyl-tRNA synthetase 2 2
MIRT692142 CEP104 centrosomal protein 104 2 2
MIRT692572 NCMAP non-compact myelin associated protein 2 2
MIRT692649 ZMYM1 zinc finger MYM-type containing 1 2 2
MIRT692744 NDUFS5 NADH:ubiquinone oxidoreductase subunit S5 2 2
MIRT693092 SCNM1 sodium channel modifier 1 2 2
MIRT693296 SYTL3 synaptotagmin like 3 2 2
MIRT693392 ZNF460 zinc finger protein 460 2 2
MIRT693530 ZNF708 zinc finger protein 708 2 2
MIRT693562 PIGR polymeric immunoglobulin receptor 2 2
MIRT694492 AGBL5 ATP/GTP binding protein like 5 2 2
MIRT694722 LLGL1 LLGL1, scribble cell polarity complex component 2 2
MIRT694866 ZNF417 zinc finger protein 417 2 2
MIRT695070 ZNF17 zinc finger protein 17 2 2
MIRT695451 COX18 COX18, cytochrome c oxidase assembly factor 2 2
MIRT695724 ZNF117 zinc finger protein 117 2 2
MIRT695898 MED16 mediator complex subunit 16 2 2
MIRT696244 UGGT1 UDP-glucose glycoprotein glucosyltransferase 1 2 2
MIRT696259 TACO1 translational activator of cytochrome c oxidase I 2 2
MIRT696512 C3 complement C3 2 2
MIRT696560 TTC21B tetratricopeptide repeat domain 21B 2 2
MIRT696643 AGXT2 alanine--glyoxylate aminotransferase 2 2 2
MIRT696791 DHODH dihydroorotate dehydrogenase (quinone) 2 2
MIRT696819 PLLP plasmolipin 2 2
MIRT697088 GPKOW G-patch domain and KOW motifs 2 2
MIRT697153 INMT indolethylamine N-methyltransferase 2 2
MIRT697202 ZYG11A zyg-11 family member A, cell cycle regulator 2 2
MIRT697322 ZNF641 zinc finger protein 641 2 2
MIRT697578 YME1L1 YME1 like 1 ATPase 2 2
MIRT697619 WSB1 WD repeat and SOCS box containing 1 2 2
MIRT698619 TES testin LIM domain protein 2 2
MIRT698804 STK38 serine/threonine kinase 38 2 2
MIRT698949 SPAST spastin 2 2
MIRT699083 SNRPD3 small nuclear ribonucleoprotein D3 polypeptide 2 2
MIRT699430 SLC1A5 solute carrier family 1 member 5 2 2
MIRT699550 SIT1 signaling threshold regulating transmembrane adaptor 1 2 2
MIRT700324 RAB4A RAB4A, member RAS oncogene family 2 2
MIRT700360 RAB33B RAB33B, member RAS oncogene family 2 2
MIRT700462 PURB purine rich element binding protein B 2 2
MIRT701677 MYADM myeloid associated differentiation marker 2 2
MIRT701757 MSL2 MSL complex subunit 2 2 2
MIRT701977 MIER3 MIER family member 3 2 2
MIRT703178 GPBP1 GC-rich promoter binding protein 1 2 2
MIRT703203 GOLGA3 golgin A3 2 2
MIRT703359 GAPVD1 GTPase activating protein and VPS9 domains 1 2 2
MIRT703425 FYTTD1 forty-two-three domain containing 1 2 2
MIRT703484 FNDC3B fibronectin type III domain containing 3B 2 2
MIRT703590 FBXO45 F-box protein 45 2 2
MIRT703806 EVI5 ecotropic viral integration site 5 2 2
MIRT703915 EPG5 ectopic P-granules autophagy protein 5 homolog 2 2
MIRT704234 DHDDS dehydrodolichyl diphosphate synthase subunit 2 2
MIRT704646 CLCC1 chloride channel CLIC like 1 2 2
MIRT705151 C11orf58 chromosome 11 open reading frame 58 2 2
MIRT705480 ASXL2 additional sex combs like 2, transcriptional regulator 2 2
MIRT705530 ARL10 ADP ribosylation factor like GTPase 10 2 2
MIRT705661 ANKRD40 ankyrin repeat domain 40 2 2
MIRT706144 ZNF674 zinc finger protein 674 2 2
MIRT706473 SNX27 sorting nexin family member 27 2 2
MIRT708254 PGPEP1 pyroglutamyl-peptidase I 2 2
MIRT708838 SCAND3 zinc finger BED-type containing 9 1 1
MIRT710437 BTNL3 butyrophilin like 3 2 2
MIRT711325 DPYSL5 dihydropyrimidinase like 5 2 2
MIRT716151 RBM48 RNA binding motif protein 48 2 2
MIRT717402 ZCCHC24 zinc finger CCHC-type containing 24 2 2
MIRT720866 ADCY5 adenylate cyclase 5 2 2
MIRT722226 ZNF503 zinc finger protein 503 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-1273h-5p Paclitaxel 36314 NSC125973 approved sensitive High Ovarian Cancer cell line (SKOV3)
hsa-miR-1273h-5p Tripterygium wilfordii Hook F resistant tissue
hsa-miR-1273h-5p Cisplatin 5460033 NSC119875 approved sensitive cell line (MGC-803)

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