pre-miRNA Information
pre-miRNA hsa-mir-500b   
Genomic Coordinates chrX: 50010672 - 50010750
Description Homo sapiens miR-500b stem-loop
Comment None
RNA Secondary Structure
Associated Diseases

Mature miRNA Information
Mature miRNA hsa-miR-500b-3p
Sequence 51| GCACCCAGGCAAGGAUUCUG |70
Evidence Experimental
Experiments Illumina
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs782140253 8 dbSNP
Putative Targets

miRNA Expression profile
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol MSANTD4   
Synonyms KIAA1826
Description Myb/SANT DNA binding domain containing 4 with coiled-coils
Transcript NM_032424   
Expression
Putative miRNA Targets on MSANTD4
3'UTR of MSANTD4
(miRNA target sites are highlighted)
>MSANTD4|NM_032424|3'UTR
   1 TTTTTCCAGGCTTCCATTTAGCAAATGTTTGAAAACTCTAGATTTTTCTCATATCAGGTGATATAATGATGGTTGCTGGA
  81 TTAGCTGTGGTTTCTTGTCTAATGTCAGTGTTCAGTAGGAAAAAGTTATATGTGGATAACTGTATGCCTAAGTAGTATAT
 161 AAAAGCTGTGCCCTAGCGTAAACAGTATAGCAGAAACTTACTGTGCTGGACTCTTTACCTTATAATATTACATAGAGTCT
 241 TGTATTGTCTGTGTACCCAGAGTTTACAATTATGTCCATATAAAATTCTAGCCCAGAAGTTCTCATCTGGGGTAGATTTT
 321 GGCCTTCAGAAGACCAATTTGGTGATGTCTGGAGACATGTTGGGTTGTCAAAACTGGGGTGGGGAAAAGGTTGCTACTGT
 401 GCAATGCATACCTCCTCAACACCCCCCCACACTCAGTAAAGAATTTTCCAACCCAAAATATCATTAGTCCTGAGGTTGAG
 481 AAACCCTGTCCTAGCCTAACTGTGTACCTCTATAGCTATGTTTTATAGTTTTAGAATATTAAAACCTCAGATATTTATGT
 561 GGGTAGGTACTTAAATGGCCAAAAACTTTAACTATGAAATGTTACTGTGTAGTATATTGAATATAGGAAGTGATGAAGAT
 641 TATAGGTATTTTATTCCCATGTTTCCATCTATAAATAGCCTTCTCAGATTCAGAAAACAATACAGAGAACATCAGAAATT
 721 TTCTAAAATGGGTCACTTTGAAAAGAATTCTTTTTCTCACTATTAATGCTTTAGAAGCAAGACGCAATTTTAAAGCTTTA
 801 GTTCCTTTTCTTTCAGTCATTGTCTTAGTTTGGGTACAAAAATGTCATTTCAGTAATGTACTGAAATCTTATAAGTGAAT
 881 AGTTGAAGCTAGTAAAAATGATACCAGTATAAAAATGGTACTTGTAGTCCATGAGCTTGAACCCAATGACTGATTGTTTG
 961 ACTTTTAAAATAAGTAATAGCAGCCATTTGGGAGTAGGGGGTAGGTGGGGAAGATGTACTCCGTATCAAATAATAATGAT
1041 GTTGAAATAATGATAGTAGGTATGTATTATGGATTGGAGAAGCACTTATTACACTATCTAACCTAATATGTAGAACAATT
1121 CTTGAGAGTTGTATCTGTCGTTATTTCTGAATGTGAAGCTCAGAGAAGTGACACAGAGTAAATGGCTGATCTTCTATATT
1201 GTAGTATATTTTGTCCTTCCCTCTTCCCTGAGGAACAAAGCACGTATCTTTAGTCTCTTTGATATTTATTCTGAGACCAA
1281 GGGCTTGCTTGACCTGATGATTTTCCTTCAGCTCTCTGAAGGTGCTTTTTCCACAATCCAAGTGATTCTGATACACACTA
1361 AAGTTGAGAATCACTGCACTAGATCACTTTGTGTTTTCTGATTTTCAAGGTTGATACGTAGCTTTAATACAGCTCTTCTG
1441 TTGACAGTTATTACTTTAATTTTGCATTTGTTCCTTGTAAGAATGGCTGGAAACTGTGTGTTGACATTTGAGGATGGGTA
1521 TGCAAGGAAAAAATATACTTCTGTTTACTTACTCTGACTTTGAAATAGTGTTATTTTTCTATATCTGAAATAAATGCTTC
1601 TACCATAGAAATAAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' gucuUAGGAACGGACCCAcg 5'
              :||:| |::|||||  
Target 5' cattGTCTTAGTTTGGGTac 3'
818 - 837 124.00 -14.10
2
miRNA  3' guCUU-AGGAACGGACCCacg 5'
            ||| |:||  :|||||   
Target 5' caGAAGTTCTCATCTGGGgta 3'
294 - 314 118.00 -17.20
3
miRNA  3' guCUUA-GGAAC--GGACCCACg 5'
            ||||  || |   ||| ||| 
Target 5' aaGAATGGCTGGAAACTGTGTGt 3'
1479 - 1501 116.00 -9.20
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN31530993 13 COSMIC
COSN30181713 34 COSMIC
COSN31493280 38 COSMIC
COSN31561450 51 COSMIC
COSN5823042 63 COSMIC
COSN31958731 64 COSMIC
COSN30182843 72 COSMIC
COSN30131466 75 COSMIC
COSN28190697 80 COSMIC
COSN31612973 85 COSMIC
COSN30704704 88 COSMIC
COSN31493094 99 COSMIC
COSN31527094 124 COSMIC
COSN30105318 147 COSMIC
COSN31599208 162 COSMIC
COSN30518578 187 COSMIC
COSN30122369 206 COSMIC
COSN16449276 238 COSMIC
COSN17201156 707 COSMIC
COSN24698077 745 COSMIC
COSN6982995 1272 COSMIC
COSN31565497 1316 COSMIC
COSN25139148 1323 COSMIC
COSN31540744 1348 COSMIC
COSN31610891 1378 COSMIC
COSN1511806 1451 COSMIC
COSN21721326 1481 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1033704548 6 dbSNP
rs777117255 8 dbSNP
rs200813602 11 dbSNP
rs1482181566 13 dbSNP
rs745738430 16 dbSNP
rs778897015 17 dbSNP
rs770840514 20 dbSNP
rs1459950803 21 dbSNP
rs749080512 22 dbSNP
rs376127790 23 dbSNP
rs755782655 25 dbSNP
rs776577061 30 dbSNP
rs1458300792 36 dbSNP
rs1295193266 37 dbSNP
rs752431661 38 dbSNP
rs1348216020 39 dbSNP
rs1359653469 40 dbSNP
rs1381434953 40 dbSNP
rs551453640 41 dbSNP
rs749640445 48 dbSNP
rs769083850 48 dbSNP
rs1271935135 50 dbSNP
rs770891318 51 dbSNP
rs1005127549 52 dbSNP
rs1366968999 58 dbSNP
rs958633743 64 dbSNP
rs533364388 68 dbSNP
rs1259487088 76 dbSNP
rs1035907399 79 dbSNP
rs760580278 80 dbSNP
rs1485781721 84 dbSNP
rs1194761603 89 dbSNP
rs1326514428 101 dbSNP
rs1461988106 110 dbSNP
rs1474324225 124 dbSNP
rs1002721864 129 dbSNP
rs374884627 130 dbSNP
rs1414683990 143 dbSNP
rs1168485105 148 dbSNP
rs1166908958 157 dbSNP
rs1343351481 158 dbSNP
rs562588874 159 dbSNP
rs1298539633 172 dbSNP
rs544091671 176 dbSNP
rs192505307 177 dbSNP
rs1188584327 178 dbSNP
rs771836364 182 dbSNP
rs1252861989 187 dbSNP
rs898159129 192 dbSNP
rs1039373872 200 dbSNP
rs1305516194 203 dbSNP
rs1038709525 205 dbSNP
rs1217852852 206 dbSNP
rs1007079096 213 dbSNP
rs747771968 216 dbSNP
rs147255687 221 dbSNP
rs1484884350 222 dbSNP
rs944373272 227 dbSNP
rs1255582249 228 dbSNP
rs1484311350 229 dbSNP
rs1175488657 233 dbSNP
rs1405741486 240 dbSNP
rs1438952781 244 dbSNP
rs531504998 244 dbSNP
rs1381982602 246 dbSNP
rs779169203 247 dbSNP
rs1432622424 249 dbSNP
rs1307716869 256 dbSNP
rs890205607 257 dbSNP
rs891396877 262 dbSNP
rs1051672450 266 dbSNP
rs935523629 269 dbSNP
rs1295910129 271 dbSNP
rs1373283106 273 dbSNP
rs1241570470 279 dbSNP
rs1312060209 280 dbSNP
rs778582356 282 dbSNP
rs1042103784 283 dbSNP
rs945550049 287 dbSNP
rs1444303073 292 dbSNP
rs370960067 299 dbSNP
rs149584042 302 dbSNP
rs915389527 304 dbSNP
rs371192223 309 dbSNP
rs990037926 322 dbSNP
rs540441995 325 dbSNP
rs1370008601 336 dbSNP
rs1239918393 339 dbSNP
rs938272791 342 dbSNP
rs1043833189 345 dbSNP
rs1415776635 357 dbSNP
rs1442980130 358 dbSNP
rs946810359 364 dbSNP
rs1294882198 367 dbSNP
rs188001301 369 dbSNP
rs557841790 371 dbSNP
rs1369353376 374 dbSNP
rs545437314 379 dbSNP
rs575309489 381 dbSNP
rs958841738 382 dbSNP
rs1347549780 395 dbSNP
rs1213069589 396 dbSNP
rs970679011 398 dbSNP
rs1318763498 401 dbSNP
rs908637289 404 dbSNP
rs1172830843 413 dbSNP
rs1433201571 417 dbSNP
rs138232662 422 dbSNP
rs982861568 423 dbSNP
rs1197935620 424 dbSNP
rs981642227 426 dbSNP
rs951242960 428 dbSNP
rs777183423 429 dbSNP
rs995068177 429 dbSNP
rs1172111508 430 dbSNP
rs1392947188 431 dbSNP
rs1324747223 434 dbSNP
rs1455959154 437 dbSNP
rs1249122757 442 dbSNP
rs1429043720 448 dbSNP
rs1277817732 460 dbSNP
rs538526768 463 dbSNP
rs1025466194 481 dbSNP
rs1220572491 486 dbSNP
rs1176065018 490 dbSNP
rs750399563 491 dbSNP
rs1209211531 500 dbSNP
rs1008523777 502 dbSNP
rs567989487 505 dbSNP
rs890091086 513 dbSNP
rs1213317600 515 dbSNP
rs1042550378 516 dbSNP
rs1009343354 518 dbSNP
rs962459669 535 dbSNP
rs1017873650 546 dbSNP
rs1415073969 553 dbSNP
rs1006526535 556 dbSNP
rs1164397845 557 dbSNP
rs35523264 557 dbSNP
rs1053990969 559 dbSNP
rs150763527 563 dbSNP
rs1207627825 566 dbSNP
rs1361439177 575 dbSNP
rs779689853 576 dbSNP
rs1291639097 581 dbSNP
rs757897581 588 dbSNP
rs1280762877 594 dbSNP
rs1245597502 600 dbSNP
rs1236302892 602 dbSNP
rs1351330899 603 dbSNP
rs1051356143 606 dbSNP
rs1000228572 607 dbSNP
rs182237121 616 dbSNP
rs1285104743 620 dbSNP
rs1488476329 624 dbSNP
rs566812881 630 dbSNP
rs1218423365 631 dbSNP
rs1254941580 632 dbSNP
rs1441346232 650 dbSNP
rs778002677 650 dbSNP
rs551848315 659 dbSNP
rs1187553153 669 dbSNP
rs533290594 671 dbSNP
rs926866946 675 dbSNP
rs1381365971 698 dbSNP
rs946757763 699 dbSNP
rs895243359 701 dbSNP
rs1055094991 702 dbSNP
rs1311356263 703 dbSNP
rs1401697142 710 dbSNP
rs949380569 714 dbSNP
rs568894973 729 dbSNP
rs1294303767 732 dbSNP
rs908561829 736 dbSNP
rs770130356 761 dbSNP
rs1237921394 764 dbSNP
rs189908656 783 dbSNP
rs981373245 784 dbSNP
rs1174654916 785 dbSNP
rs1433366518 788 dbSNP
rs929912196 796 dbSNP
rs553987702 814 dbSNP
rs1257723905 838 dbSNP
rs973897566 842 dbSNP
rs1435540692 845 dbSNP
rs1362511768 858 dbSNP
rs1159046981 861 dbSNP
rs1419111386 866 dbSNP
rs1252009576 871 dbSNP
rs1185235101 872 dbSNP
rs755158154 877 dbSNP
rs1257788340 881 dbSNP
rs1017988148 882 dbSNP
rs186405555 883 dbSNP
rs1466701198 885 dbSNP
rs753964573 893 dbSNP
rs1174501851 897 dbSNP
rs1394506582 905 dbSNP
rs1029779749 907 dbSNP
rs540012281 923 dbSNP
rs528290251 927 dbSNP
rs902782861 932 dbSNP
rs1022449464 940 dbSNP
rs1448754455 944 dbSNP
rs1011082981 946 dbSNP
rs1020647643 949 dbSNP
rs895199504 953 dbSNP
rs766430831 955 dbSNP
rs1315594021 967 dbSNP
rs1197397416 980 dbSNP
rs1259273366 981 dbSNP
rs527830681 985 dbSNP
rs905334578 993 dbSNP
rs1434115178 994 dbSNP
rs939471444 998 dbSNP
rs564175544 1000 dbSNP
rs1416956233 1002 dbSNP
rs1371492502 1005 dbSNP
rs1048221114 1015 dbSNP
rs949643345 1016 dbSNP
rs558449515 1022 dbSNP
rs141266793 1023 dbSNP
rs757138247 1036 dbSNP
rs973837144 1037 dbSNP
rs1467163160 1052 dbSNP
rs1291686112 1062 dbSNP
rs1389835585 1063 dbSNP
rs1366123846 1067 dbSNP
rs1302976930 1073 dbSNP
rs1162090305 1074 dbSNP
rs1474602053 1088 dbSNP
rs1418064299 1092 dbSNP
rs1189660230 1096 dbSNP
rs1319358001 1097 dbSNP
rs1220089546 1100 dbSNP
rs1444960945 1102 dbSNP
rs941203314 1103 dbSNP
rs1205558240 1113 dbSNP
rs377531782 1118 dbSNP
rs556975041 1123 dbSNP
rs1261337675 1128 dbSNP
rs751412861 1133 dbSNP
rs1486805995 1139 dbSNP
rs1425919094 1140 dbSNP
rs773146979 1145 dbSNP
rs1474266790 1152 dbSNP
rs1162672450 1154 dbSNP
rs1349174848 1167 dbSNP
rs1271206536 1175 dbSNP
rs1295031105 1176 dbSNP
rs1211838486 1178 dbSNP
rs1358259714 1183 dbSNP
rs1399065083 1184 dbSNP
rs1298397813 1191 dbSNP
rs955330573 1195 dbSNP
rs767242315 1196 dbSNP
rs1312638868 1199 dbSNP
rs1294091829 1201 dbSNP
rs1247470570 1202 dbSNP
rs1284380624 1203 dbSNP
rs943223505 1204 dbSNP
rs910410553 1208 dbSNP
rs1247222901 1211 dbSNP
rs1324956364 1213 dbSNP
rs1295292107 1221 dbSNP
rs1029303864 1224 dbSNP
rs1424276907 1228 dbSNP
rs1383129700 1230 dbSNP
rs978181933 1231 dbSNP
rs1418851207 1236 dbSNP
rs1158887180 1239 dbSNP
rs1361990193 1240 dbSNP
rs541868463 1243 dbSNP
rs183015858 1244 dbSNP
rs1043142 1257 dbSNP
rs957910982 1262 dbSNP
rs1394529672 1271 dbSNP
rs1353514820 1272 dbSNP
rs1241258170 1276 dbSNP
rs1166527907 1287 dbSNP
rs138732188 1291 dbSNP
rs1372217326 1294 dbSNP
rs57384125 1298 dbSNP
rs1238174010 1306 dbSNP
rs1484260258 1324 dbSNP
rs1430101010 1325 dbSNP
rs1251013191 1331 dbSNP
rs1213024321 1333 dbSNP
rs1003617700 1342 dbSNP
rs1158983464 1343 dbSNP
rs371111670 1343 dbSNP
rs906622696 1348 dbSNP
rs904928399 1350 dbSNP
rs1047699350 1355 dbSNP
rs1174875658 1358 dbSNP
rs1025179937 1360 dbSNP
rs1470664464 1362 dbSNP
rs1329928987 1374 dbSNP
rs558102003 1376 dbSNP
rs993906971 1383 dbSNP
rs887370033 1384 dbSNP
rs1365902759 1389 dbSNP
rs1218906464 1391 dbSNP
rs1250981565 1396 dbSNP
rs1228550370 1397 dbSNP
rs1196751825 1398 dbSNP
rs191670839 1400 dbSNP
rs1047727654 1408 dbSNP
rs897041822 1410 dbSNP
rs1043144 1418 dbSNP
rs898465971 1426 dbSNP
rs748936164 1432 dbSNP
rs1190326246 1443 dbSNP
rs1425367935 1446 dbSNP
rs941319199 1450 dbSNP
rs911034828 1451 dbSNP
rs1481135621 1466 dbSNP
rs1372433380 1470 dbSNP
rs569141136 1474 dbSNP
rs1466649401 1500 dbSNP
rs1407722056 1503 dbSNP
rs1331424622 1504 dbSNP
rs1348574146 1506 dbSNP
rs1436191693 1507 dbSNP
rs942818545 1517 dbSNP
rs1369948230 1521 dbSNP
rs1168161043 1530 dbSNP
rs769361033 1533 dbSNP
rs1318656897 1534 dbSNP
rs186720148 1536 dbSNP
rs778293744 1552 dbSNP
rs966360629 1555 dbSNP
rs1393008811 1581 dbSNP
rs914950332 1596 dbSNP
rs957747443 1614 dbSNP
rs989712678 1623 dbSNP
rs959640301 1625 dbSNP
rs529257784 1626 dbSNP
rs1033822971 1628 dbSNP
rs1477860871 1629 dbSNP
rs1170208322 1632 dbSNP
rs568215588 1636 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HEK293S
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in GSM1084079. RNA binding protein: AGO2. Condition:CLIP_hippuristanol_rep2_AbnovaAb ...

- Karginov FV; Hannon GJ, 2013, Genes & development.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' gucuuaggaaCGGACCCACg 5'
                    | ||||||| 
Target 5' ------caggGGCUGGGUGc 3'
1 - 14
Article - Karginov FV; Hannon GJ
- Genes & development, 2013
When adapting to environmental stress, cells attenuate and reprogram their translational output. In part, these altered translation profiles are established through changes in the interactions between RNA-binding proteins and mRNAs. The Argonaute 2 (Ago2)/microRNA (miRNA) machinery has been shown to participate in stress-induced translational up-regulation of a particular mRNA, CAT-1; however, a detailed, transcriptome-wide understanding of the involvement of Ago2 in the process has been lacking. Here, we profiled the overall changes in Ago2-mRNA interactions upon arsenite stress by cross-linking immunoprecipitation (CLIP) followed by high-throughput sequencing (CLIP-seq). Ago2 displayed a significant remodeling of its transcript occupancy, with the majority of 3' untranslated region (UTR) and coding sequence (CDS) sites exhibiting stronger interaction. Interestingly, target sites that were destined for release from Ago2 upon stress were depleted in miRNA complementarity signatures, suggesting an alternative mode of interaction. To compare the changes in Ago2-binding patterns across transcripts with changes in their translational states, we measured mRNA profiles on ribosome/polysome gradients by RNA sequencing (RNA-seq). Increased Ago2 occupancy correlated with stronger repression of translation for those mRNAs, as evidenced by a shift toward lighter gradient fractions upon stress, while release of Ago2 was associated with the limited number of transcripts that remained translated. Taken together, these data point to a role for Ago2 and the mammalian miRNAs in mediating the translational component of the stress response.
LinkOut: [PMID: 23824327]
CLIP-seq Support 1 for dataset GSM1084079
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_hippuristanol_rep2_AbnovaAb
Location of target site ENST00000301919.4 | 3UTR | CAGGGGCUGGGUGCGGUGGCU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
172 hsa-miR-500b-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT059905 HDGF heparin binding growth factor 2 4
MIRT235394 KDELR1 KDEL endoplasmic reticulum protein retention receptor 1 2 4
MIRT442246 PYGO1 pygopus family PHD finger 1 2 2
MIRT443591 ZNF439 zinc finger protein 439 2 4
MIRT453280 EFTUD2 elongation factor Tu GTP binding domain containing 2 2 2
MIRT463540 ZBTB7A zinc finger and BTB domain containing 7A 2 2
MIRT465589 TNRC6B trinucleotide repeat containing 6B 2 2
MIRT469462 REL REL proto-oncogene, NF-kB subunit 2 2
MIRT485449 KCTD15 potassium channel tetramerization domain containing 15 2 4
MIRT486682 WDR81 WD repeat domain 81 2 2
MIRT489078 POLM DNA polymerase mu 2 2
MIRT493734 GREM2 gremlin 2, DAN family BMP antagonist 2 2
MIRT494872 DYNLL2 dynein light chain LC8-type 2 2 2
MIRT496130 RNF103-CHMP3 RNF103-CHMP3 readthrough 2 2
MIRT496489 CHMP3 charged multivesicular body protein 3 2 2
MIRT496924 CLMN calmin 2 2
MIRT497297 TMEM119 transmembrane protein 119 2 2
MIRT499103 AGRN agrin 2 2
MIRT508979 CXorf38 chromosome X open reading frame 38 2 2
MIRT509911 NIPAL1 NIPA like domain containing 1 2 2
MIRT512820 ARRDC2 arrestin domain containing 2 2 4
MIRT512827 KBTBD6 kelch repeat and BTB domain containing 6 2 4
MIRT515360 MRPL52 mitochondrial ribosomal protein L52 2 2
MIRT516610 TRIM58 tripartite motif containing 58 2 2
MIRT517053 TLDC1 TBC/LysM-associated domain containing 1 2 2
MIRT517637 ZNF491 zinc finger protein 491 2 2
MIRT518270 LEAP2 liver enriched antimicrobial peptide 2 2 2
MIRT518625 STAR steroidogenic acute regulatory protein 2 2
MIRT518887 N4BP2L2 NEDD4 binding protein 2 like 2 2 2
MIRT519026 PAICS phosphoribosylaminoimidazole carboxylase and phosphoribosylaminoimidazolesuccinocarboxamide synthase 2 2
MIRT520365 UBE2G2 ubiquitin conjugating enzyme E2 G2 2 2
MIRT521106 SLC1A5 solute carrier family 1 member 5 2 2
MIRT521943 PHC3 polyhomeotic homolog 3 2 2
MIRT522253 NPEPPS aminopeptidase puromycin sensitive 2 2
MIRT522853 KIAA1551 KIAA1551 2 2
MIRT522868 KIAA1549 KIAA1549 2 2
MIRT524207 DDX19B DEAD-box helicase 19B 2 2
MIRT526004 ARHGAP27 Rho GTPase activating protein 27 2 2
MIRT527769 RRAD RRAD, Ras related glycolysis inhibitor and calcium channel regulator 2 2
MIRT527827 TMEM74B transmembrane protein 74B 2 2
MIRT527861 SMOC1 SPARC related modular calcium binding 1 2 2
MIRT528040 WT1 Wilms tumor 1 2 2
MIRT529802 ZDHHC8 zinc finger DHHC-type containing 8 2 2
MIRT531723 TARS threonyl-tRNA synthetase 2 2
MIRT531996 BARD1 BRCA1 associated RING domain 1 2 2
MIRT533338 UNC119B unc-119 lipid binding chaperone B 2 2
MIRT533621 TNFRSF13C TNF receptor superfamily member 13C 2 2
MIRT533652 TMOD2 tropomodulin 2 2 2
MIRT534397 SENP3 SUMO1/sentrin/SMT3 specific peptidase 3 2 2
MIRT538686 CCDC80 coiled-coil domain containing 80 2 2
MIRT540444 RBM43 RNA binding motif protein 43 2 2
MIRT542586 ZC3H12C zinc finger CCCH-type containing 12C 2 8
MIRT542796 PLEKHA3 pleckstrin homology domain containing A3 2 4
MIRT542991 ERC1 ELKS/RAB6-interacting/CAST family member 1 2 2
MIRT544424 ZNF460 zinc finger protein 460 2 4
MIRT545740 ESF1 ESF1 nucleolar pre-rRNA processing protein homolog 2 4
MIRT552618 ZBTB8A zinc finger and BTB domain containing 8A 2 2
MIRT554456 SAMD8 sterile alpha motif domain containing 8 2 2
MIRT569663 PRIM1 DNA primase subunit 1 2 2
MIRT569924 PCSK9 proprotein convertase subtilisin/kexin type 9 2 2
MIRT570140 IL1RL2 interleukin 1 receptor like 2 2 2
MIRT573558 TMEM120B transmembrane protein 120B 2 2
MIRT574282 OPRD1 opioid receptor delta 1 2 2
MIRT575335 Fbxo6 F-box protein 6 2 2
MIRT607057 IDS iduronate 2-sulfatase 2 2
MIRT607078 POM121L7 POM121 transmembrane nucleoporin like 7 pseudogene 2 2
MIRT607500 HEBP2 heme binding protein 2 2 2
MIRT607530 ABL2 ABL proto-oncogene 2, non-receptor tyrosine kinase 2 2
MIRT607808 RHBDL2 rhomboid like 2 2 2
MIRT608079 ZFP14 ZFP14 zinc finger protein 2 2
MIRT609119 NUDT3 nudix hydrolase 3 2 2
MIRT609745 PTCH1 patched 1 2 2
MIRT612904 HIF1AN hypoxia inducible factor 1 alpha subunit inhibitor 2 2
MIRT618720 PCSK2 proprotein convertase subtilisin/kexin type 2 2 2
MIRT618778 HLA-E major histocompatibility complex, class I, E 2 2
MIRT619015 SLC2A6 solute carrier family 2 member 6 2 2
MIRT623223 MSANTD4 Myb/SANT DNA binding domain containing 4 with coiled-coils 2 2
MIRT623819 GEMIN6 gem nuclear organelle associated protein 6 2 2
MIRT625704 OPTN optineurin 2 2
MIRT626437 CHDH choline dehydrogenase 2 2
MIRT628087 KAT7 lysine acetyltransferase 7 2 2
MIRT628936 APOB apolipoprotein B 2 2
MIRT633543 PGBD5 piggyBac transposable element derived 5 2 2
MIRT634348 SGOL1 shugoshin 1 2 2
MIRT634611 KIAA1919 major facilitator superfamily domain containing 4B 2 2
MIRT635243 QPRT quinolinate phosphoribosyltransferase 2 2
MIRT636681 BTLA B and T lymphocyte associated 2 2
MIRT636923 ZNF845 zinc finger protein 845 2 2
MIRT637606 ZNF554 zinc finger protein 554 2 2
MIRT639242 RANGAP1 Ran GTPase activating protein 1 2 2
MIRT640835 POLR3A RNA polymerase III subunit A 2 2
MIRT642098 FBXL2 F-box and leucine rich repeat protein 2 2 2
MIRT643087 PTPLAD2 3-hydroxyacyl-CoA dehydratase 4 1 1
MIRT643934 C17orf104 meiosis specific with coiled-coil domain 2 2
MIRT644353 FXN frataxin 2 2
MIRT645628 SF3A3 splicing factor 3a subunit 3 2 2
MIRT645754 FAM213A family with sequence similarity 213 member A 2 2
MIRT646329 MVB12B multivesicular body subunit 12B 2 2
MIRT646817 COX19 COX19, cytochrome c oxidase assembly factor 2 2
MIRT647019 ADCY2 adenylate cyclase 2 2 2
MIRT647621 IGSF9B immunoglobulin superfamily member 9B 2 2
MIRT648517 PIGG phosphatidylinositol glycan anchor biosynthesis class G 2 2
MIRT648871 ABCA6 ATP binding cassette subfamily A member 6 2 2
MIRT649620 ITPKC inositol-trisphosphate 3-kinase C 2 2
MIRT650062 CCDC134 coiled-coil domain containing 134 2 2
MIRT650734 TNFSF8 TNF superfamily member 8 2 2
MIRT652389 TMEM55A phosphatidylinositol-4,5-bisphosphate 4-phosphatase 2 2 2
MIRT654352 RBM27 RNA binding motif protein 27 2 2
MIRT655796 NOVA2 NOVA alternative splicing regulator 2 2 2
MIRT657329 HNRNPK heterogeneous nuclear ribonucleoprotein K 2 2
MIRT657734 GOSR1 golgi SNAP receptor complex member 1 2 2
MIRT660613 ANO6 anoctamin 6 2 2
MIRT661243 ARL17B ADP ribosylation factor like GTPase 17B 2 2
MIRT662245 PGBD4 piggyBac transposable element derived 4 2 2
MIRT662921 MED18 mediator complex subunit 18 2 2
MIRT662963 JPH2 junctophilin 2 2 2
MIRT663347 ZNF74 zinc finger protein 74 2 2
MIRT663528 MASTL microtubule associated serine/threonine kinase like 2 2
MIRT663547 CCR6 C-C motif chemokine receptor 6 2 2
MIRT663977 ZNF786 zinc finger protein 786 2 2
MIRT664084 METTL2B methyltransferase like 2B 2 2
MIRT664358 C16orf45 chromosome 16 open reading frame 45 2 2
MIRT664421 TIGD6 tigger transposable element derived 6 2 2
MIRT664476 ZYG11B zyg-11 family member B, cell cycle regulator 2 2
MIRT664979 TDRD1 tudor domain containing 1 2 2
MIRT665128 PYCRL pyrroline-5-carboxylate reductase 3 2 2
MIRT666259 SLC31A1 solute carrier family 31 member 1 2 2
MIRT666321 SLC16A10 solute carrier family 16 member 10 2 2
MIRT666881 POLQ DNA polymerase theta 2 2
MIRT668469 FADS6 fatty acid desaturase 6 2 2
MIRT669554 ALG14 ALG14, UDP-N-acetylglucosaminyltransferase subunit 2 2
MIRT669835 ISCA2 iron-sulfur cluster assembly 2 2 2
MIRT670185 CCDC142 coiled-coil domain containing 142 2 2
MIRT672020 PXMP4 peroxisomal membrane protein 4 2 2
MIRT672070 KIAA0930 KIAA0930 2 2
MIRT672475 RTTN rotatin 2 2
MIRT672851 ICOSLG inducible T-cell costimulator ligand 2 2
MIRT673090 AK1 adenylate kinase 1 2 2
MIRT673581 KDELC2 KDEL motif containing 2 2 2
MIRT674586 SLC35B4 solute carrier family 35 member B4 2 2
MIRT675001 STRN3 striatin 3 2 2
MIRT679018 MTMR10 myotubularin related protein 10 2 2
MIRT679680 STAT3 signal transducer and activator of transcription 3 2 2
MIRT682833 FLG2 filaggrin family member 2 2 2
MIRT682886 SAR1A secretion associated Ras related GTPase 1A 2 2
MIRT683442 AP3B2 adaptor related protein complex 3 beta 2 subunit 2 2
MIRT687040 RNF115 ring finger protein 115 2 2
MIRT691957 RHOH ras homolog family member H 2 2
MIRT694625 ZFPM1 zinc finger protein, FOG family member 1 2 2
MIRT695637 SLC26A2 solute carrier family 26 member 2 2 2
MIRT697640 WRN Werner syndrome RecQ like helicase 2 2
MIRT702009 MIDN midnolin 2 2
MIRT702034 MOGAT1 monoacylglycerol O-acyltransferase 1 2 2
MIRT704789 CDK6 cyclin dependent kinase 6 2 2
MIRT705728 AMMECR1L AMMECR1 like 2 2
MIRT705879 ADM adrenomedullin 2 2
MIRT706220 ACOT9 acyl-CoA thioesterase 9 2 2
MIRT708418 CERS4 ceramide synthase 4 2 2
MIRT709114 C3orf18 chromosome 3 open reading frame 18 2 2
MIRT709595 ITPA inosine triphosphatase 2 2
MIRT710945 MRPL45 mitochondrial ribosomal protein L45 2 2
MIRT712345 NLN neurolysin 2 2
MIRT712530 CYTH2 cytohesin 2 2 2
MIRT714019 ASCC1 activating signal cointegrator 1 complex subunit 1 2 2
MIRT717287 ARMC12 armadillo repeat containing 12 2 2
MIRT717733 FGF1 fibroblast growth factor 1 2 2
MIRT718083 CLIC5 chloride intracellular channel 5 2 2
MIRT718562 MUC20 mucin 20, cell surface associated 2 2
MIRT721639 MYLK3 myosin light chain kinase 3 2 2
MIRT722632 C8A complement C8 alpha chain 2 2
MIRT723177 CDCA4 cell division cycle associated 4 2 2
MIRT725523 FAM229B family with sequence similarity 229 member B 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-500b Methotrexate 126941 NSC740 approved resistant cell line (W1)
hsa-miR-500b-3p Gemcitabine 60750 NSC613327 approved resistant High Pancreatic Cancer cell line (AsPC-1)
hsa-miR-500b-3p Gefitinib 123631 NSC715055 approved resistant cell line (HCC827)
hsa-miR-500b-3p Osimertinib 71496458 NSC779217 approved resistant cell line (PC9)
hsa-miR-500b-3p Osimertinib 71496458 NSC779217 approved sensitive cell line (HCC827)
hsa-miR-500b-3p Vemurafenib 42611257 NSC761431 approved resistant cell line (451Lu)
hsa-miR-500b-3p Gefitinib 123631 NSC715055 approved sensitive cell line (HCC827)

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