pre-miRNA Information
pre-miRNA hsa-mir-4477a   
Genomic Coordinates chr9: 41233755 - 41233835
Description Homo sapiens miR-4477a stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-4477a
Sequence 48| CUAUUAAGGACAUUUGUGAUUC |69
Evidence Experimental
Experiments Illumina
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1281813060 1 dbSNP
rs1352899679 1 dbSNP
rs1283566158 2 dbSNP
rs1236244724 4 dbSNP
rs75019967 4 dbSNP
rs1348124293 5 dbSNP
rs34026740 8 dbSNP
rs1288237115 9 dbSNP
rs71262206 10 dbSNP
rs1355759977 11 dbSNP
rs1300249508 16 dbSNP
rs1328879592 18 dbSNP
rs139133717 20 dbSNP
Putative Targets

Gene Information
Gene Symbol HNRNPA1   
Synonyms ALS19, ALS20, HNRPA1, HNRPA1L3, IBMPFD3, UP 1, hnRNP A1, hnRNP-A1
Description heterogeneous nuclear ribonucleoprotein A1
Transcript NM_002136   
Other Transcripts NM_031157   
Expression
Putative miRNA Targets on HNRNPA1
3'UTR of HNRNPA1
(miRNA target sites are highlighted)
>HNRNPA1|NM_002136|3'UTR
   1 TTAGGAAACAAAGCTTAGCAGGAGAGGAGAGCCAGAGAAGTGACAGGGAAGCTACAGGTTACAACAGATTTGTGAACTCA
  81 GCCAAGCACAGTGGTGGCAGGGCCTAGCTGCTACAAAGAAGACATGTTTTAGACAAATACTCATGTGTATGGGCAAAAAA
 161 CTCGAGGACTGTATTTGTGACTAATTGTATAACAGGTTATTTTAGTTTCTGTTCTGTGGAAAGTGTAAAGCATTCCAACA
 241 AAGGGTTTTAATGTAGATTTTTTTTTTTGCACCCCATGCTGTTGATTGCTAAATGTAACAGTCTGATCGTGACGCTGAAT
 321 AAATGTCTTTTTTTTAATGTGCTGTGTAAAGTTAGTCTACTCTTAAGCCATCTTGGTAAATTTCCCCAACAGTGTGAAGT
 401 TAGAATTCCTTCAGGGTGATGCCAGGTTCTATTTGGAATTTATATACAACCTGCTTGGGTGGAGAAGCCATTGTCTTCGG
 481 AAACCTTGGTGTAGTTGAACTGATAGTTACTGTTGTGACCTGAAGTTCACCATTAAAAGGGATTACCCAAGCAAAATCAT
 561 GGAATGGTTATAAAAGTGATTGTTGGCACATCCTATGCAATATATCTAAATTGAATAATGGTACCAGATAAAATTATAGA
 641 TGGGAATGAAGCTTGTGTATCCATTATCATGTGTAATCAATAAACGATTTAATTCTCTTGAAAAAAAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' cuuagUGUUUACAGGAAUUAUc 5'
               ||||| | ::|||||: 
Target 5' ttccaACAAAGGGTTTTAATGt 3'
233 - 254 133.00 -6.40
2
miRNA  3' cuuagUGUUUACAG-----GAAUUAUc 5'
               |:|||||||     :|||||: 
Target 5' gctgaATAAATGTCTTTTTTTTAATGt 3'
314 - 340 133.00 -9.85
3
miRNA  3' cuUAGUGUUUACAGGAAUUAuc 5'
            || |||::|  ::|||:|  
Target 5' gtATAACAGGTTATTTTAGTtt 3'
187 - 208 112.00 -5.10
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN31567743 2 COSMIC
COSN2378414 6 COSMIC
COSN26668072 7 COSMIC
COSN20077787 35 COSMIC
COSN19368807 52 COSMIC
COSN4891596 62 COSMIC
COSN5324147 62 COSMIC
COSN30597064 87 COSMIC
COSN16832030 122 COSMIC
COSN19689861 132 COSMIC
COSN7374205 145 COSMIC
COSN7374206 205 COSMIC
COSN1576756 237 COSMIC
COSN8586364 302 COSMIC
COSN9751732 382 COSMIC
COSN28642572 383 COSMIC
COSN9083787 470 COSMIC
COSN15661165 531 COSMIC
COSN28641992 550 COSMIC
COSN31563453 596 COSMIC
COSN9083788 598 COSMIC
COSN19408136 657 COSMIC
COSN26677164 852 COSMIC
COSN16098602 898 COSMIC
COSN32137374 1051 COSMIC
COSN31663621 1230 COSMIC
COSN14598016 1426 COSMIC
COSN18714720 1605 COSMIC
COSN9563866 1739 COSMIC
COSN7616944 1883 COSMIC
COSN29861951 1917 COSMIC
COSN26234338 2079 COSMIC
COSN2492750 2083 COSMIC
COSN5946563 2236 COSMIC
COSN15136880 2418 COSMIC
COSN6616414 2627 COSMIC
COSN24991795 2693 COSMIC
COSN26883119 2746 COSMIC
COSN1149593 2755 COSMIC
COSN29008192 2755 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1381345475 3 dbSNP
rs1402469304 4 dbSNP
rs764587450 5 dbSNP
rs1256125188 7 dbSNP
rs1467973612 13 dbSNP
rs1483928902 13 dbSNP
rs185440272 14 dbSNP
rs1242130123 17 dbSNP
rs1465643777 19 dbSNP
rs762411249 26 dbSNP
rs1026348474 30 dbSNP
rs1449345614 32 dbSNP
rs768062002 34 dbSNP
rs1379491777 36 dbSNP
rs781170901 37 dbSNP
rs1172221404 40 dbSNP
rs1176834178 46 dbSNP
rs750522774 47 dbSNP
rs756191880 48 dbSNP
rs1322241695 50 dbSNP
rs376830001 51 dbSNP
rs754089897 52 dbSNP
rs1299949444 56 dbSNP
rs1199883000 59 dbSNP
rs1374203368 62 dbSNP
rs544977777 63 dbSNP
rs371452672 66 dbSNP
rs1340701088 67 dbSNP
rs867828035 68 dbSNP
rs926866372 79 dbSNP
rs938238604 81 dbSNP
rs532880784 90 dbSNP
rs1394231723 99 dbSNP
rs761275864 99 dbSNP
rs1166242775 100 dbSNP
rs1475088161 102 dbSNP
rs1386129464 104 dbSNP
rs1185602604 111 dbSNP
rs1442986328 114 dbSNP
rs1357607340 118 dbSNP
rs1234236423 123 dbSNP
rs548076577 134 dbSNP
rs780632286 143 dbSNP
rs1042526084 152 dbSNP
rs1271416699 153 dbSNP
rs1194762099 156 dbSNP
rs575983828 158 dbSNP
rs1207288690 160 dbSNP
rs1252548157 166 dbSNP
rs903541582 166 dbSNP
rs1483129922 167 dbSNP
rs936308845 173 dbSNP
rs1381579229 184 dbSNP
rs1180845280 185 dbSNP
rs755142260 188 dbSNP
rs1313501614 190 dbSNP
rs1328057150 195 dbSNP
rs778691498 196 dbSNP
rs1409476097 202 dbSNP
rs775703600 208 dbSNP
rs1415620882 213 dbSNP
rs1262128101 214 dbSNP
rs1329376871 216 dbSNP
rs1210998987 228 dbSNP
rs889725441 241 dbSNP
rs537037310 246 dbSNP
rs1403395659 248 dbSNP
rs1485730415 263 dbSNP
rs1192341055 282 dbSNP
rs1008109174 302 dbSNP
rs758335427 309 dbSNP
rs1431513889 311 dbSNP
rs777753412 318 dbSNP
rs1019452635 319 dbSNP
rs1459064605 326 dbSNP
rs1157177525 366 dbSNP
rs1386269149 372 dbSNP
rs1452773874 373 dbSNP
rs896972665 374 dbSNP
rs1369560866 376 dbSNP
rs1219604320 379 dbSNP
rs1384601070 383 dbSNP
rs993636555 386 dbSNP
rs1026800612 395 dbSNP
rs1403508288 396 dbSNP
rs1225287850 403 dbSNP
rs1172532198 413 dbSNP
rs952078362 415 dbSNP
rs1278715152 449 dbSNP
rs1437158078 454 dbSNP
rs1347320360 458 dbSNP
rs1305100986 474 dbSNP
rs1403121543 477 dbSNP
rs1429108948 481 dbSNP
rs1306289489 488 dbSNP
rs1033619097 489 dbSNP
rs533212482 489 dbSNP
rs879367409 489 dbSNP
rs918129644 489 dbSNP
rs992810065 489 dbSNP
rs967260398 496 dbSNP
rs1357553196 497 dbSNP
rs1481083639 500 dbSNP
rs1271607881 501 dbSNP
rs1196656914 510 dbSNP
rs1490032670 512 dbSNP
rs1242363528 520 dbSNP
rs3953255 531 dbSNP
rs1217560775 532 dbSNP
rs977896953 535 dbSNP
rs1283939819 540 dbSNP
rs558097327 541 dbSNP
rs3953256 545 dbSNP
rs1216816996 546 dbSNP
rs576751121 548 dbSNP
rs1281231786 552 dbSNP
rs1221784038 559 dbSNP
rs1345018035 559 dbSNP
rs1135894 567 dbSNP
rs1289487734 568 dbSNP
rs1433230906 571 dbSNP
rs1343640128 576 dbSNP
rs936381093 595 dbSNP
rs4016669 596 dbSNP
rs1470468145 600 dbSNP
rs1432120302 602 dbSNP
rs1049425287 609 dbSNP
rs910857147 618 dbSNP
rs1419661956 622 dbSNP
rs1187760820 624 dbSNP
rs943970990 629 dbSNP
rs1241105304 640 dbSNP
rs1041357434 645 dbSNP
rs1271889353 649 dbSNP
rs10652 656 dbSNP
rs897011334 659 dbSNP
rs1202998470 663 dbSNP
rs113736551 670 dbSNP
rs1048199361 699 dbSNP
rs1453867125 700 dbSNP
rs4118339 701 dbSNP
rs1408825211 702 dbSNP
rs1335104986 704 dbSNP
rs1469799757 707 dbSNP
rs4016670 710 dbSNP
rs1006225712 711 dbSNP
rs1418392944 713 dbSNP
rs1183869703 715 dbSNP
rs1033673108 716 dbSNP
rs559999647 717 dbSNP
rs1241109952 725 dbSNP
rs959362016 729 dbSNP
rs1182733890 730 dbSNP
rs1480925920 732 dbSNP
rs1188065812 735 dbSNP
rs559132230 738 dbSNP
rs1390664594 742 dbSNP
rs1013859530 744 dbSNP
rs1025634247 753 dbSNP
rs1448810972 754 dbSNP
rs1247045320 756 dbSNP
rs1385258044 760 dbSNP
rs181507184 768 dbSNP
rs1166768627 779 dbSNP
rs4118338 783 dbSNP
rs4118337 788 dbSNP
rs1374704715 794 dbSNP
rs966957554 804 dbSNP
rs866056457 809 dbSNP
rs1377391142 811 dbSNP
rs1460048449 813 dbSNP
rs1353452509 818 dbSNP
rs1163658228 822 dbSNP
rs1426222058 824 dbSNP
rs542005675 825 dbSNP
rs925402477 832 dbSNP
rs1333822659 838 dbSNP
rs1357656521 845 dbSNP
rs766892723 848 dbSNP
rs1346136241 852 dbSNP
rs985199033 853 dbSNP
rs1175462078 855 dbSNP
rs1365043670 859 dbSNP
rs4016671 863 dbSNP
rs1226907367 869 dbSNP
rs910930600 874 dbSNP
rs1361884634 875 dbSNP
rs745432514 885 dbSNP
rs1317850375 888 dbSNP
rs1219439322 889 dbSNP
rs4016672 890 dbSNP
rs918514512 893 dbSNP
rs929888299 894 dbSNP
rs563781412 899 dbSNP
rs1048220401 900 dbSNP
rs1303240127 901 dbSNP
rs867852317 903 dbSNP
rs1363362768 909 dbSNP
rs140633160 917 dbSNP
rs1453976719 918 dbSNP
rs1217613427 919 dbSNP
rs1156662675 921 dbSNP
rs1418493277 927 dbSNP
rs1429841573 931 dbSNP
rs546193833 934 dbSNP
rs868281539 935 dbSNP
rs371332286 941 dbSNP
rs1490850237 943 dbSNP
rs55706371 945 dbSNP
rs1267069336 956 dbSNP
rs1248462515 967 dbSNP
rs1291933106 973 dbSNP
rs1464359756 974 dbSNP
rs1209523791 979 dbSNP
rs1186666516 982 dbSNP
rs1262922895 985 dbSNP
rs1237259619 986 dbSNP
rs1329080042 993 dbSNP
rs1284440574 994 dbSNP
rs1396951544 995 dbSNP
rs1478363461 997 dbSNP
rs1322273887 999 dbSNP
rs113463590 1002 dbSNP
rs528796027 1003 dbSNP
rs895177637 1007 dbSNP
rs1402685700 1010 dbSNP
rs1452704298 1015 dbSNP
rs1321620311 1018 dbSNP
rs1233912480 1032 dbSNP
rs1178446526 1036 dbSNP
rs184630270 1038 dbSNP
rs1024950463 1041 dbSNP
rs568707896 1049 dbSNP
rs1264038342 1051 dbSNP
rs1203786384 1052 dbSNP
rs1464689507 1061 dbSNP
rs999748174 1064 dbSNP
rs1372385741 1072 dbSNP
rs1436495138 1074 dbSNP
rs1322029890 1075 dbSNP
rs780110414 1078 dbSNP
rs767938981 1079 dbSNP
rs1342404229 1090 dbSNP
rs1032546016 1091 dbSNP
rs111768814 1092 dbSNP
rs1018025386 1094 dbSNP
rs1468216884 1096 dbSNP
rs965129359 1097 dbSNP
rs548016860 1098 dbSNP
rs1254740768 1105 dbSNP
rs1191363386 1115 dbSNP
rs1449056543 1116 dbSNP
rs1244206412 1121 dbSNP
rs768152588 1125 dbSNP
rs983998653 1128 dbSNP
rs1278457299 1129 dbSNP
rs1198191508 1132 dbSNP
rs1340800571 1134 dbSNP
rs1249093817 1136 dbSNP
rs1245108958 1138 dbSNP
rs1471263554 1141 dbSNP
rs1316904858 1143 dbSNP
rs1450102834 1147 dbSNP
rs1339832749 1151 dbSNP
rs909741861 1154 dbSNP
rs937160313 1155 dbSNP
rs138310298 1156 dbSNP
rs1166791380 1157 dbSNP
rs536721561 1159 dbSNP
rs1429416401 1165 dbSNP
rs1386031425 1170 dbSNP
rs895238207 1172 dbSNP
rs945161045 1185 dbSNP
rs1237438056 1188 dbSNP
rs1167561906 1189 dbSNP
rs773914335 1191 dbSNP
rs1042509223 1200 dbSNP
rs1405338769 1204 dbSNP
rs1322269482 1208 dbSNP
rs903354924 1215 dbSNP
rs1008365949 1219 dbSNP
rs1247892639 1222 dbSNP
rs1411261005 1223 dbSNP
rs1203734273 1229 dbSNP
rs902504837 1235 dbSNP
rs1293440912 1242 dbSNP
rs767053244 1243 dbSNP
rs1355438750 1247 dbSNP
rs1000225571 1254 dbSNP
rs1349499500 1261 dbSNP
rs189523819 1264 dbSNP
rs1306276410 1265 dbSNP
rs1274838864 1280 dbSNP
rs768428131 1287 dbSNP
rs1366464162 1289 dbSNP
rs894007567 1293 dbSNP
rs1403795829 1294 dbSNP
rs1356937160 1303 dbSNP
rs1413581525 1309 dbSNP
rs1159509738 1319 dbSNP
rs997492302 1323 dbSNP
rs1410308572 1332 dbSNP
rs1007078649 1334 dbSNP
rs1490355795 1337 dbSNP
rs1018431689 1338 dbSNP
rs1026998836 1339 dbSNP
rs952798314 1343 dbSNP
rs976497287 1350 dbSNP
rs1004303054 1354 dbSNP
rs1025769835 1364 dbSNP
rs1225200795 1370 dbSNP
rs1348462072 1371 dbSNP
rs1183007622 1375 dbSNP
rs1251276171 1376 dbSNP
rs1471754090 1381 dbSNP
rs113017899 1382 dbSNP
rs1190482191 1386 dbSNP
rs548441388 1386 dbSNP
rs570075446 1389 dbSNP
rs534640891 1390 dbSNP
rs1319391211 1393 dbSNP
rs1402758956 1400 dbSNP
rs970775994 1401 dbSNP
rs552844808 1403 dbSNP
rs574573847 1410 dbSNP
rs1430876969 1415 dbSNP
rs1188937170 1416 dbSNP
rs1162034975 1417 dbSNP
rs1399273953 1421 dbSNP
rs937235360 1427 dbSNP
rs926437983 1428 dbSNP
rs570118696 1429 dbSNP
rs747201540 1430 dbSNP
rs991283287 1437 dbSNP
rs1369504019 1442 dbSNP
rs771323977 1444 dbSNP
rs796651892 1451 dbSNP
rs776821116 1453 dbSNP
rs1348887903 1456 dbSNP
rs1363512802 1459 dbSNP
rs180704694 1460 dbSNP
rs949533383 1467 dbSNP
rs1340914659 1471 dbSNP
rs556843142 1478 dbSNP
rs1408866421 1479 dbSNP
rs1046473902 1481 dbSNP
rs1282301934 1482 dbSNP
rs944998112 1484 dbSNP
rs1419818829 1485 dbSNP
rs866927948 1494 dbSNP
rs1187951418 1502 dbSNP
rs564982932 1504 dbSNP
rs911678703 1507 dbSNP
rs1247261763 1510 dbSNP
rs944437160 1512 dbSNP
rs1183960388 1514 dbSNP
rs1462612191 1525 dbSNP
rs1254127395 1529 dbSNP
rs1208134876 1530 dbSNP
rs1341397955 1534 dbSNP
rs1273761368 1536 dbSNP
rs1216614059 1544 dbSNP
rs1205914465 1546 dbSNP
rs952204406 1548 dbSNP
rs1389041673 1549 dbSNP
rs1385662019 1552 dbSNP
rs1474110261 1552 dbSNP
rs1482176884 1554 dbSNP
rs1164978480 1555 dbSNP
rs1213370379 1555 dbSNP
rs1447919511 1556 dbSNP
rs1354653721 1558 dbSNP
rs1004951335 1559 dbSNP
rs1391321272 1559 dbSNP
rs1041261786 1561 dbSNP
rs1404618141 1562 dbSNP
rs1253788157 1566 dbSNP
rs1446175838 1566 dbSNP
rs898900085 1566 dbSNP
rs1181246813 1568 dbSNP
rs994626160 1569 dbSNP
rs1023463625 1573 dbSNP
rs1297079751 1577 dbSNP
rs1480914735 1577 dbSNP
rs1233580379 1580 dbSNP
rs1207310074 1586 dbSNP
rs1423541227 1590 dbSNP
rs1274143109 1596 dbSNP
rs1247202678 1597 dbSNP
rs1323931602 1603 dbSNP
rs575713387 1605 dbSNP
rs1375245845 1611 dbSNP
rs765823708 1613 dbSNP
rs1374678380 1615 dbSNP
rs149141494 1619 dbSNP
rs1007109930 1620 dbSNP
rs1407384698 1624 dbSNP
rs528553227 1643 dbSNP
rs1303426844 1645 dbSNP
rs901335521 1654 dbSNP
rs997126084 1656 dbSNP
rs1025377103 1657 dbSNP
rs564478719 1665 dbSNP
rs528483188 1666 dbSNP
rs1410000749 1668 dbSNP
rs1184466016 1674 dbSNP
rs1016514963 1676 dbSNP
rs958623192 1677 dbSNP
rs1004653677 1679 dbSNP
rs1223563258 1686 dbSNP
rs1489579718 1687 dbSNP
rs1264121785 1693 dbSNP
rs1221207527 1697 dbSNP
rs1290717797 1706 dbSNP
rs991356922 1720 dbSNP
rs540957582 1750 dbSNP
rs1015544086 1751 dbSNP
rs1388221145 1753 dbSNP
rs1388047779 1758 dbSNP
rs1292744627 1761 dbSNP
rs146354980 1762 dbSNP
rs1003572208 1763 dbSNP
rs1472210552 1770 dbSNP
rs1411399776 1773 dbSNP
rs1200223932 1776 dbSNP
rs1331988768 1776 dbSNP
rs1435129382 1777 dbSNP
rs971236789 1778 dbSNP
rs1033488368 1793 dbSNP
rs1367214840 1796 dbSNP
rs982635114 1803 dbSNP
rs1229099690 1834 dbSNP
rs1296956798 1835 dbSNP
rs1263225206 1836 dbSNP
rs1340199877 1839 dbSNP
rs924063923 1840 dbSNP
rs1329019250 1841 dbSNP
rs1235525548 1844 dbSNP
rs1367157127 1846 dbSNP
rs1318279611 1848 dbSNP
rs1456700140 1856 dbSNP
rs756881148 1870 dbSNP
rs767200321 1873 dbSNP
rs1053790375 1882 dbSNP
rs1467601948 1884 dbSNP
rs1483064864 1900 dbSNP
rs1198488452 1903 dbSNP
rs989417462 1915 dbSNP
rs1250368312 1916 dbSNP
rs1264356663 1918 dbSNP
rs1465719156 1924 dbSNP
rs1188561151 1927 dbSNP
rs915109955 1929 dbSNP
rs1464852656 1934 dbSNP
rs1244239019 1948 dbSNP
rs915214010 1951 dbSNP
rs966645844 1952 dbSNP
rs977793413 1953 dbSNP
rs1227778207 1963 dbSNP
rs1295132764 1968 dbSNP
rs1343848506 1968 dbSNP
rs969216369 1984 dbSNP
rs1434010428 1991 dbSNP
rs1383463584 1992 dbSNP
rs749934568 1993 dbSNP
rs942968072 1993 dbSNP
rs911542929 1995 dbSNP
rs1039935496 2000 dbSNP
rs552561618 2003 dbSNP
rs1430653580 2005 dbSNP
rs1447072431 2007 dbSNP
rs998376084 2007 dbSNP
rs547014213 2009 dbSNP
rs1177613482 2012 dbSNP
rs1377806727 2015 dbSNP
rs1047649051 2017 dbSNP
rs886860992 2019 dbSNP
rs570478089 2023 dbSNP
rs1005224232 2025 dbSNP
rs139179873 2027 dbSNP
rs1441176122 2031 dbSNP
rs1254952314 2032 dbSNP
rs755681192 2034 dbSNP
rs1195801363 2040 dbSNP
rs1016588836 2055 dbSNP
rs921433846 2060 dbSNP
rs958361589 2067 dbSNP
rs1359955400 2068 dbSNP
rs1435703429 2073 dbSNP
rs1013274474 2075 dbSNP
rs1024212848 2078 dbSNP
rs1333611311 2080 dbSNP
rs1410463418 2082 dbSNP
rs1372676166 2088 dbSNP
rs186449759 2097 dbSNP
rs569306243 2099 dbSNP
rs1048545874 2103 dbSNP
rs1302099444 2105 dbSNP
rs1311802938 2110 dbSNP
rs1231388168 2115 dbSNP
rs888733046 2117 dbSNP
rs1472097476 2118 dbSNP
rs1368339184 2121 dbSNP
rs530640819 2123 dbSNP
rs940266064 2126 dbSNP
rs1473261825 2128 dbSNP
rs1248941930 2130 dbSNP
rs977301058 2132 dbSNP
rs1490411448 2133 dbSNP
rs1330319208 2140 dbSNP
rs1208513882 2151 dbSNP
rs778907261 2155 dbSNP
rs924402192 2167 dbSNP
rs1230119376 2169 dbSNP
rs1352460143 2173 dbSNP
rs551845937 2180 dbSNP
rs1286515197 2181 dbSNP
rs1409515552 2182 dbSNP
rs1350616216 2183 dbSNP
rs1325955531 2184 dbSNP
rs571559475 2187 dbSNP
rs570159545 2188 dbSNP
rs1037021490 2197 dbSNP
rs906516929 2198 dbSNP
rs1160601578 2199 dbSNP
rs1192384068 2204 dbSNP
rs1448464799 2214 dbSNP
rs538567027 2217 dbSNP
rs1267504631 2218 dbSNP
rs1180747967 2231 dbSNP
rs117046077 2235 dbSNP
rs1432226352 2239 dbSNP
rs1003603418 2244 dbSNP
rs12656 2246 dbSNP
rs1450862387 2250 dbSNP
rs1284668850 2252 dbSNP
rs191215922 2253 dbSNP
rs1326990459 2254 dbSNP
rs1266318368 2267 dbSNP
rs1227796395 2275 dbSNP
rs1457510994 2278 dbSNP
rs1276788017 2280 dbSNP
rs1434538583 2283 dbSNP
rs1158185944 2284 dbSNP
rs1330932541 2284 dbSNP
rs868276883 2299 dbSNP
rs1459423529 2301 dbSNP
rs942662341 2304 dbSNP
rs1426627089 2310 dbSNP
rs1170498872 2312 dbSNP
rs1011190426 2317 dbSNP
rs1477484845 2318 dbSNP
rs1040080321 2319 dbSNP
rs80251270 2325 dbSNP
rs754892078 2327 dbSNP
rs181906119 2332 dbSNP
rs1367078377 2335 dbSNP
rs1280793351 2338 dbSNP
rs1385297026 2341 dbSNP
rs1344504995 2351 dbSNP
rs73304521 2357 dbSNP
rs1047234010 2359 dbSNP
rs557119450 2362 dbSNP
rs1266653413 2363 dbSNP
rs1005297903 2364 dbSNP
rs1360447663 2370 dbSNP
rs1331618569 2373 dbSNP
rs1413558792 2378 dbSNP
rs1324009758 2381 dbSNP
rs1170276291 2382 dbSNP
rs568396188 2387 dbSNP
rs1389283375 2402 dbSNP
rs967053327 2404 dbSNP
rs778743480 2406 dbSNP
rs1484185027 2407 dbSNP
rs1018639459 2408 dbSNP
rs187122180 2409 dbSNP
rs974498093 2410 dbSNP
rs747993578 2415 dbSNP
rs1340548047 2419 dbSNP
rs771272958 2430 dbSNP
rs1297305574 2437 dbSNP
rs539977045 2438 dbSNP
rs984717697 2439 dbSNP
rs191500648 2440 dbSNP
rs111253751 2447 dbSNP
rs1446584768 2457 dbSNP
rs957192125 2459 dbSNP
rs910037523 2460 dbSNP
rs940291622 2461 dbSNP
rs1037223914 2462 dbSNP
rs772017484 2463 dbSNP
rs1165140354 2464 dbSNP
rs906548218 2469 dbSNP
rs989590043 2475 dbSNP
rs1409536469 2481 dbSNP
rs573312088 2488 dbSNP
rs1022399063 2490 dbSNP
rs1425482487 2493 dbSNP
rs1055041670 2506 dbSNP
rs1349240523 2507 dbSNP
rs540649275 2509 dbSNP
rs895262572 2511 dbSNP
rs561909173 2512 dbSNP
rs574280273 2517 dbSNP
rs1371352124 2519 dbSNP
rs544539332 2525 dbSNP
rs552799834 2526 dbSNP
rs934293925 2529 dbSNP
rs983435667 2529 dbSNP
rs908738693 2533 dbSNP
rs1018837465 2535 dbSNP
rs1407681371 2540 dbSNP
rs1229257986 2541 dbSNP
rs1038472789 2549 dbSNP
rs1459217209 2558 dbSNP
rs777050841 2569 dbSNP
rs974445613 2570 dbSNP
rs1028639456 2571 dbSNP
rs1412881531 2575 dbSNP
rs143091756 2577 dbSNP
rs1045411076 2581 dbSNP
rs1471740296 2581 dbSNP
rs906856662 2582 dbSNP
rs183364059 2583 dbSNP
rs1264021309 2588 dbSNP
rs984526977 2592 dbSNP
rs1204075277 2596 dbSNP
rs1269496859 2597 dbSNP
rs1225991436 2599 dbSNP
rs1316004412 2605 dbSNP
rs1230958862 2611 dbSNP
rs1388128798 2614 dbSNP
rs1365300995 2616 dbSNP
rs1324970889 2617 dbSNP
rs910059997 2619 dbSNP
rs1484073020 2620 dbSNP
rs551880122 2622 dbSNP
rs1031576300 2625 dbSNP
rs1390670901 2625 dbSNP
rs1455673309 2629 dbSNP
rs111805463 2638 dbSNP
rs1363269651 2644 dbSNP
rs893027826 2645 dbSNP
rs563823392 2646 dbSNP
rs1011431602 2657 dbSNP
rs1193317642 2660 dbSNP
rs940154395 2661 dbSNP
rs1017408182 2669 dbSNP
rs1207356570 2672 dbSNP
rs964168068 2673 dbSNP
rs975894586 2677 dbSNP
rs1029702472 2681 dbSNP
rs528139096 2682 dbSNP
rs1302430719 2683 dbSNP
rs746099913 2687 dbSNP
rs77993769 2695 dbSNP
rs1367303527 2698 dbSNP
rs1449151715 2702 dbSNP
rs1381556842 2705 dbSNP
rs147199419 2706 dbSNP
rs6717 2710 dbSNP
rs1384418175 2712 dbSNP
rs972967653 2719 dbSNP
rs1467776051 2721 dbSNP
rs928256290 2724 dbSNP
rs769926860 2725 dbSNP
rs1392395058 2727 dbSNP
rs1187291600 2728 dbSNP
rs1299162072 2731 dbSNP
rs1055561434 2733 dbSNP
rs1256252087 2739 dbSNP
rs916573676 2741 dbSNP
rs200425263 2742 dbSNP
rs1201616566 2744 dbSNP
rs140728579 2744 dbSNP
rs201857164 2745 dbSNP
rs1043776989 2750 dbSNP
rs902350264 2755 dbSNP
rs948533591 2762 dbSNP
rs535748240 2769 dbSNP
rs1236718203 2772 dbSNP
rs550588303 2772 dbSNP
rs569078515 2775 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HEK293S
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in GSM1084079. RNA binding protein: AGO2. Condition:CLIP_hippuristanol_rep2_AbnovaAb ...

- Karginov FV; Hannon GJ, 2013, Genes & development.

Article - Karginov FV; Hannon GJ
- Genes & development, 2013
When adapting to environmental stress, cells attenuate and reprogram their translational output. In part, these altered translation profiles are established through changes in the interactions between RNA-binding proteins and mRNAs. The Argonaute 2 (Ago2)/microRNA (miRNA) machinery has been shown to participate in stress-induced translational up-regulation of a particular mRNA, CAT-1; however, a detailed, transcriptome-wide understanding of the involvement of Ago2 in the process has been lacking. Here, we profiled the overall changes in Ago2-mRNA interactions upon arsenite stress by cross-linking immunoprecipitation (CLIP) followed by high-throughput sequencing (CLIP-seq). Ago2 displayed a significant remodeling of its transcript occupancy, with the majority of 3' untranslated region (UTR) and coding sequence (CDS) sites exhibiting stronger interaction. Interestingly, target sites that were destined for release from Ago2 upon stress were depleted in miRNA complementarity signatures, suggesting an alternative mode of interaction. To compare the changes in Ago2-binding patterns across transcripts with changes in their translational states, we measured mRNA profiles on ribosome/polysome gradients by RNA sequencing (RNA-seq). Increased Ago2 occupancy correlated with stronger repression of translation for those mRNAs, as evidenced by a shift toward lighter gradient fractions upon stress, while release of Ago2 was associated with the limited number of transcripts that remained translated. Taken together, these data point to a role for Ago2 and the mammalian miRNAs in mediating the translational component of the stress response.
LinkOut: [PMID: 23824327]
CLIP-seq Support 1 for dataset GSM1084079
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_hippuristanol_rep2_AbnovaAb
Location of target site ENST00000546500.1 | 3UTR | AAUGGGUUUUUUUUUUU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
134 hsa-miR-4477a Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT055843 PLEKHA1 pleckstrin homology domain containing A1 2 10
MIRT061259 AMOTL1 angiomotin like 1 2 4
MIRT071895 BTF3L4 basic transcription factor 3 like 4 2 6
MIRT076933 MLLT6 MLLT6, PHD finger containing 2 2
MIRT078652 ICT1 mitochondrial ribosomal protein L58 2 2
MIRT083633 PRNP prion protein 2 2
MIRT091629 RPL15 ribosomal protein L15 2 4
MIRT107076 PPP6C protein phosphatase 6 catalytic subunit 2 2
MIRT111191 TRIM33 tripartite motif containing 33 2 2
MIRT114515 ARF6 ADP ribosylation factor 6 2 2
MIRT175250 PSAT1 phosphoserine aminotransferase 1 2 4
MIRT175430 ACSL4 acyl-CoA synthetase long chain family member 4 2 2
MIRT178687 FAM102B family with sequence similarity 102 member B 2 2
MIRT189771 CDADC1 cytidine and dCMP deaminase domain containing 1 2 2
MIRT229450 RPL10 ribosomal protein L10 2 2
MIRT244899 PHF6 PHD finger protein 6 2 2
MIRT249189 AKIRIN1 akirin 1 2 8
MIRT261134 TRIM8 tripartite motif containing 8 2 2
MIRT275561 ZIC5 Zic family member 5 2 4
MIRT275652 ABHD13 abhydrolase domain containing 13 2 2
MIRT288082 UTP18 UTP18, small subunit processome component 2 2
MIRT303605 MTHFD2 methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase 2 2
MIRT307924 ARL8B ADP ribosylation factor like GTPase 8B 2 2
MIRT316787 FOXC1 forkhead box C1 2 2
MIRT326910 SCML2 Scm polycomb group protein like 2 2 2
MIRT327713 SPIN4 spindlin family member 4 2 2
MIRT331632 AASDHPPT aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase 2 2
MIRT342506 TMOD3 tropomodulin 3 2 4
MIRT354470 LRRC58 leucine rich repeat containing 58 2 2
MIRT378711 TRIM24 tripartite motif containing 24 2 2
MIRT407462 YDJC YdjC chitooligosaccharide deacetylase homolog 2 2
MIRT408226 SMAD5 SMAD family member 5 2 4
MIRT441824 ALG14 ALG14, UDP-N-acetylglucosaminyltransferase subunit 2 2
MIRT442783 CHD8 chromodomain helicase DNA binding protein 8 2 2
MIRT443184 NHS NHS actin remodeling regulator 2 4
MIRT447615 CUL3 cullin 3 2 2
MIRT450156 DSEL dermatan sulfate epimerase-like 2 2
MIRT454801 NEDD9 neural precursor cell expressed, developmentally down-regulated 9 2 2
MIRT463050 ZNF644 zinc finger protein 644 2 2
MIRT467400 SOCS3 suppressor of cytokine signaling 3 2 2
MIRT468174 SGMS1 sphingomyelin synthase 1 2 2
MIRT468949 RPS14 ribosomal protein S14 2 6
MIRT469835 R3HDM4 R3H domain containing 4 2 2
MIRT470724 POFUT1 protein O-fucosyltransferase 1 2 2
MIRT470902 PLIN3 perilipin 3 2 2
MIRT472467 NAPG NSF attachment protein gamma 2 12
MIRT472602 NAA50 N(alpha)-acetyltransferase 50, NatE catalytic subunit 2 2
MIRT492350 SEMA7A semaphorin 7A (John Milton Hagen blood group) 2 2
MIRT493840 FOXN3 forkhead box N3 2 4
MIRT496318 DOCK9 dedicator of cytokinesis 9 2 2
MIRT500159 CLEC2D C-type lectin domain family 2 member D 2 8
MIRT500535 XPO4 exportin 4 2 4
MIRT503916 FBXL13 F-box and leucine rich repeat protein 13 2 4
MIRT504003 SAT1 spermidine/spermine N1-acetyltransferase 1 2 4
MIRT505647 SHMT1 serine hydroxymethyltransferase 1 2 4
MIRT506574 MIER3 MIER family member 3 2 4
MIRT506945 HS3ST3B1 heparan sulfate-glucosamine 3-sulfotransferase 3B1 2 4
MIRT508196 RPS19 ribosomal protein S19 2 6
MIRT511417 HSPA13 heat shock protein family A (Hsp70) member 13 2 4
MIRT512326 ACTB actin beta 2 4
MIRT515376 RPL7 ribosomal protein L7 2 2
MIRT520422 TUBG1 tubulin gamma 1 2 4
MIRT524844 ARPP19 cAMP regulated phosphoprotein 19 2 2
MIRT526320 UGT2A1 UDP glucuronosyltransferase family 2 member A1 complex locus 2 2
MIRT526561 UGT2A2 UDP glucuronosyltransferase family 2 member A2 2 2
MIRT528027 FEZ2 fasciculation and elongation protein zeta 2 2 2
MIRT529874 RBM43 RNA binding motif protein 43 2 2
MIRT530826 CLEC4D C-type lectin domain family 4 member D 2 2
MIRT531334 GDPD1 glycerophosphodiester phosphodiesterase domain containing 1 2 2
MIRT532068 CCNB1 cyclin B1 2 4
MIRT532870 ZNF566 zinc finger protein 566 2 2
MIRT535580 NUP35 nucleoporin 35 2 2
MIRT537644 ERGIC2 ERGIC and golgi 2 2 4
MIRT537725 ELAVL2 ELAV like RNA binding protein 2 2 2
MIRT538894 BRI3BP BRI3 binding protein 2 2
MIRT538945 BMP2K BMP2 inducible kinase 2 2
MIRT540703 PDPK1 3-phosphoinositide dependent protein kinase 1 2 4
MIRT543210 TMEM117 transmembrane protein 117 2 3
MIRT543357 LYRM2 LYR motif containing 2 2 2
MIRT544905 CLSPN claspin 2 2
MIRT545532 ARF3 ADP ribosylation factor 3 2 2
MIRT546446 SMOC1 SPARC related modular calcium binding 1 2 2
MIRT546882 PURB purine rich element binding protein B 2 4
MIRT547440 MED13 mediator complex subunit 13 2 2
MIRT548027 GOLIM4 golgi integral membrane protein 4 2 2
MIRT548673 CRNKL1 crooked neck pre-mRNA splicing factor 1 2 2
MIRT550435 LLGL2 LLGL2, scribble cell polarity complex component 2 2
MIRT551850 RPS3 ribosomal protein S3 2 2
MIRT556072 MRFAP1 Morf4 family associated protein 1 2 2
MIRT556554 LIMS1 LIM zinc finger domain containing 1 2 2
MIRT557132 HOXA13 homeobox A13 2 2
MIRT557875 FEM1B fem-1 homolog B 2 4
MIRT558146 ELK4 ELK4, ETS transcription factor 2 2
MIRT558862 CD2AP CD2 associated protein 2 2
MIRT558884 CCNE1 cyclin E1 2 4
MIRT558907 CBX5 chromobox 5 2 2
MIRT559175 BRAP BRCA1 associated protein 2 2
MIRT560860 GAL3ST3 galactose-3-O-sulfotransferase 3 2 2
MIRT561729 PPIF peptidylprolyl isomerase F 2 2
MIRT564024 CEBPB CCAAT/enhancer binding protein beta 2 2
MIRT564366 TRMT5 tRNA methyltransferase 5 2 2
MIRT564609 ZNF703 zinc finger protein 703 2 2
MIRT565494 AZF1 azoospermia factor 1 2 2
MIRT565577 SLC6A8 solute carrier family 6 member 8 2 2
MIRT566947 LEPROT leptin receptor overlapping transcript 2 2
MIRT567293 HNRNPA2B1 heterogeneous nuclear ribonucleoprotein A2/B1 2 2
MIRT567308 HMGN2 high mobility group nucleosomal binding domain 2 2 2
MIRT568048 CHSY1 chondroitin sulfate synthase 1 2 2
MIRT571807 PHF19 PHD finger protein 19 2 2
MIRT609234 RBM23 RNA binding motif protein 23 2 2
MIRT610328 SSX5 SSX family member 5 2 2
MIRT611428 UGT8 UDP glycosyltransferase 8 2 4
MIRT611709 SLFN13 schlafen family member 13 2 2
MIRT612069 CEP135 centrosomal protein 135 2 4
MIRT617676 JRKL JRK like 2 2
MIRT623684 HNRNPA1 heterogeneous nuclear ribonucleoprotein A1 2 2
MIRT635634 PRR15L proline rich 15 like 2 2
MIRT636422 MBOAT2 membrane bound O-acyltransferase domain containing 2 2 2
MIRT637011 GPATCH11 G-patch domain containing 11 2 2
MIRT644150 C4orf3 chromosome 4 open reading frame 3 2 2
MIRT648562 MEMO1 mediator of cell motility 1 2 2
MIRT650752 WNT16 Wnt family member 16 2 2
MIRT651914 UEVLD UEV and lactate/malate dehyrogenase domains 2 2
MIRT653556 SLC38A7 solute carrier family 38 member 7 2 2
MIRT692277 XRN2 5'-3' exoribonuclease 2 2 2
MIRT697650 WNK1 WNK lysine deficient protein kinase 1 2 2
MIRT703876 ERCC6 ERCC excision repair 6, chromatin remodeling factor 2 2
MIRT704615 CLIP1 CAP-Gly domain containing linker protein 1 2 2
MIRT708562 BBOX1 gamma-butyrobetaine hydroxylase 1 2 2
MIRT709614 KBTBD6 kelch repeat and BTB domain containing 6 2 2
MIRT712955 SGCD sarcoglycan delta 2 2
MIRT713502 DCAF17 DDB1 and CUL4 associated factor 17 2 2
MIRT720239 GPBP1 GC-rich promoter binding protein 1 2 2
MIRT724255 GLUD1 glutamate dehydrogenase 1 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-4477a Imatinib 5291 NSC743414 approved sensitive High Gastrointestinal Stromal Tumor cell line (882R-NC, 882R-OE, 882R-KD)
hsa-miR-4477a Osimertinib 71496458 NSC779217 approved resistant cell line (HCC827)
hsa-miR-4477a Vemurafenib 42611257 NSC761431 approved resistant cell line (451Lu)

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