pre-miRNA Information
pre-miRNA hsa-mir-6818   
Genomic Coordinates chr22: 30007049 - 30007113
Description Homo sapiens miR-6818 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-6818-3p
Sequence 44| UUGUCUCUUGUUCCUCACACAG |65
Evidence Experimental
Experiments Meta-analysis
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1325627700 2 dbSNP
rs750902684 3 dbSNP
rs756542190 6 dbSNP
rs1365035732 17 dbSNP
Putative Targets

Gene Information
Gene Symbol HHAT   
Synonyms MART2, SKI1, Skn
Description hedgehog acyltransferase
Transcript NM_001122834   
Other Transcripts NM_001170564 , NM_001170580 , NM_001170587 , NM_001170588 , NM_018194   
Expression
Putative miRNA Targets on HHAT
3'UTR of HHAT
(miRNA target sites are highlighted)
>HHAT|NM_001122834|3'UTR
   1 TGCTGTTGGGCCCAGGCCAGTCCTTGTTGCTGGCCTCCAAGGCAAATAGTGCTTCACCCTGACCTCTCACTCCAGGACAG
  81 CCTCTAAGGGATTTGATCTGCTCATCTTCAGTTGAATGCCCTCACTCCAAGACTGGATGCTGGATCTCATAGAAAATTCA
 161 CAGCCAGACAATCTTCTAATCTGGAGTCTTTGAGATCTTCTACCCCAACTCATCATTTTCCTATTGAGGAAACGGGTCCA
 241 GGGCAGTCGTGTGTCTTACCCAGCTACACAGGGTGACATTTTGGTCTAGAACCTAGTCTCATGAGCCCTTTGCATTCTTT
 321 CCCCTTAAGCAAGAATAGAATGTAGTGGAAATTTATTGATTGAGACACAGAAATCCTGATTAGTGATAGGCCTGTCTTCT
 401 GGGCAATATTTCTAAAATATTTGAGTGACATTGATGTTTAAGTGACCTCCTTCATCACATCCTGCAGTATCTCCAGAAGC
 481 AGCACTAGGGTTTGAGTTTCATGCTTCAGCCCCTCTGTAGGAATGAGACCAAGCCACAGCTGTCTTTTGAATTACGTAGT
 561 CGAAGAAGACGGTAGCAGCCCTGTAGCATTCTAAGGCATCTATACCCAAGGAGTCCTGTGATCTGAGCTTCAGCAGGGTG
 641 ATCTACATTTGGGTGCTTGTTTCTGAGATTTGCAGAGAAGTATAACATGGTAGTTCCTCTACCTTACAGTTAATCGTTTC
 721 TTAATAAAGAAGCAGAATTTAGAAACCACAGGATAGTGTACCCACAGATGGGTGTTATCAAGGCCAGTCATGAGGATGGT
 801 GTCCTGGAGTCTTGTCCACCCTCTCCATACAAGTCTCAAAAGTCATCCTCCTACTCAGTGATTCACGTTTAGTGGTTTAT
 881 ATTATTAAGGTTTGATTCAAACAGAGCCTTTTCTGTCCTGTAGATAATCTACATGTTTGTAGAATTATTTTGAATATGTT
 961 TGAGGAAAATGTTTAAAATCTAAATATACTCACATAACTTGATTATTCACTCCTCTGAAAAGATGCTGGATAGGCTACCA
1041 AAGTTCCCAAGTGGTAGATAATTCAGAAGACTTGTTTGAATTTGGATTTTTTTTTTTTTTGGAGTGGGGAAGGGTATAAA
1121 GGAGGCTTAAAATTTGAATCCATAATATATCTAATTACAGGAGAATTTACAACATCTCAAGTACGTAAATTAAGTTGTCA
1201 TTGAGTGAAAGGTTCACTTGGACCTAGTGCTGCCTCCTGTTTATTACATAGCATGGCCCTTATGTCTTGAGTTGAGGTTA
1281 TCATCTCAATGAGGCTTTAGCTCCTAGAGTACAGGACCATTTTGTTGATTGTCTTTCTTCATAGCTTCTCTGCTTGGCAA
1361 AGAGATGGGAGGGGGCCAGATACTGACTACCTGGGGTAGGCACATTATGTGTTAAAGCAAGACAGAGGCCAGAGAGGGGC
1441 AGGTAGACCTGCATAGCAGCAGCCTCAGCAGCTGTCTTGGTAAAGGAGAGAGAGAGACATGGGGCCAGTAATTCCGGGGT
1521 GCTCAGAAGTTTTAGGAGGGGATGAGCCTCAGGGAGGAGTGAGCACCTAAATGAACGCAGTAAACCTTCATGGACCAACA
1601 GTGATTGAGGATTTGTGGGCAGCCAGAGGGAGTCTGACTGAAGTTTACTTGGAAAGAAAGGGCTTGCTAAGAAAAAAGGG
1681 AGTAAAAATGATGATAGGGAAGTGTCTAATGTATGTGCACATATAAGTAATACAAAAGTTTTGAGCTCTTCCAAGTATAC
1761 CATTTATATACAAACAAATAGGTTTATTCATTCATTAAACTACTTTGGAAGCGTCAGTGGATATATTTGAAAGTGGTAAT
1841 CCTGAATCTCTTTTAAACTATTATATGATTCATAATGGTTCTCAGGAATTAATAAATGATTACTGTGTTTAGCTCTG
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' gacacaCUCCUUGUUCUCUGUu 5'
                |: ||: :||||||| 
Target 5' ggtaaaGGAGAGAGAGAGACAt 3'
1479 - 1500 152.00 -15.90
2
miRNA  3' gacACACUCCUUGUUCUCUGUu 5'
             ||||:| |:| ||||: | 
Target 5' attTGTGGGCAGCCAGAGGGAg 3'
1611 - 1632 123.00 -15.60
3
miRNA  3' gaCACA--CUCCUUGU-UCUCUGuu 5'
            ||||   || || | ||||:|  
Target 5' atGTGTTAAAGCAAGACAGAGGCca 3'
1407 - 1431 122.00 -10.32
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN15663018 20 COSMIC
COSN30110177 26 COSMIC
COSN31592259 36 COSMIC
COSN30625739 58 COSMIC
COSN30502722 70 COSMIC
COSN30115297 121 COSMIC
COSN30129908 138 COSMIC
COSN31575492 147 COSMIC
COSN20795103 207 COSMIC
COSN30614800 211 COSMIC
COSN28202124 244 COSMIC
COSN24485949 328 COSMIC
COSN8431401 530 COSMIC
COSN29849600 753 COSMIC
COSN4747506 916 COSMIC
COSN20095932 1101 COSMIC
COSN27312126 1101 COSMIC
COSN32064550 1104 COSMIC
COSN7200915 1300 COSMIC
COSN7200916 1577 COSMIC
COSN17854867 1643 COSMIC
COSN7200917 1735 COSMIC
COSN21403936 1738 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs761452174 1 dbSNP
rs201086519 4 dbSNP
rs1201975126 5 dbSNP
rs771614520 6 dbSNP
rs1189875805 7 dbSNP
rs772761598 10 dbSNP
rs760058152 14 dbSNP
rs1371948323 15 dbSNP
rs1001152004 17 dbSNP
rs766375128 18 dbSNP
rs775939647 19 dbSNP
rs4366378 20 dbSNP
rs370014934 21 dbSNP
rs191482026 22 dbSNP
rs1336455692 24 dbSNP
rs757529570 27 dbSNP
rs750545864 29 dbSNP
rs376887707 33 dbSNP
rs780625625 35 dbSNP
rs749783894 37 dbSNP
rs774610788 46 dbSNP
rs1483689313 48 dbSNP
rs779219266 50 dbSNP
rs1240995903 53 dbSNP
rs940475640 63 dbSNP
rs571481420 65 dbSNP
rs1028370138 67 dbSNP
rs953654906 68 dbSNP
rs898832421 69 dbSNP
rs1459827700 82 dbSNP
rs1242347330 87 dbSNP
rs985441626 92 dbSNP
rs930529060 99 dbSNP
rs1285460508 100 dbSNP
rs1354467910 113 dbSNP
rs1016472313 118 dbSNP
rs1356394618 127 dbSNP
rs1285621683 135 dbSNP
rs1050353354 136 dbSNP
rs889057040 145 dbSNP
rs1008735507 147 dbSNP
rs1243378406 151 dbSNP
rs1217991143 156 dbSNP
rs1245508198 163 dbSNP
rs1310539783 169 dbSNP
rs962187051 172 dbSNP
rs972204476 178 dbSNP
rs1353281492 179 dbSNP
rs12566226 182 dbSNP
rs182831221 188 dbSNP
rs949466476 197 dbSNP
rs980798592 205 dbSNP
rs926614184 206 dbSNP
rs1040265794 207 dbSNP
rs1441249106 209 dbSNP
rs1053617574 213 dbSNP
rs116274232 224 dbSNP
rs892322446 234 dbSNP
rs550651904 237 dbSNP
rs185965230 241 dbSNP
rs762976944 248 dbSNP
rs536645290 249 dbSNP
rs762086618 250 dbSNP
rs1286214051 252 dbSNP
rs773578380 252 dbSNP
rs1242771347 256 dbSNP
rs1160573556 259 dbSNP
rs536332932 259 dbSNP
rs903234482 262 dbSNP
rs900926863 263 dbSNP
rs140503607 274 dbSNP
rs998944077 275 dbSNP
rs190867834 285 dbSNP
rs1033404292 290 dbSNP
rs957405433 294 dbSNP
rs1013360953 309 dbSNP
rs1006502934 313 dbSNP
rs115501471 314 dbSNP
rs377483738 315 dbSNP
rs981565256 318 dbSNP
rs1308842717 333 dbSNP
rs1377864921 334 dbSNP
rs1196672362 347 dbSNP
rs1225552386 351 dbSNP
rs750529697 361 dbSNP
rs961729620 368 dbSNP
rs1218273744 369 dbSNP
rs1025524670 421 dbSNP
rs1284057642 426 dbSNP
rs1287736775 431 dbSNP
rs971855067 448 dbSNP
rs920368760 449 dbSNP
rs930310295 451 dbSNP
rs1456698211 455 dbSNP
rs926672745 460 dbSNP
rs1341157976 465 dbSNP
rs760622340 483 dbSNP
rs1237195471 494 dbSNP
rs10863850 504 dbSNP
rs1428940087 508 dbSNP
rs910463344 512 dbSNP
rs944613864 514 dbSNP
rs1344830761 520 dbSNP
rs1158183604 523 dbSNP
rs538772085 524 dbSNP
rs1404741724 530 dbSNP
rs903038431 537 dbSNP
rs1174127267 543 dbSNP
rs1479835056 544 dbSNP
rs1263328862 545 dbSNP
rs754880317 551 dbSNP
rs913832689 553 dbSNP
rs183421323 556 dbSNP
rs1241142207 557 dbSNP
rs1040856115 561 dbSNP
rs1054531997 562 dbSNP
rs766665762 563 dbSNP
rs893233647 571 dbSNP
rs544439457 572 dbSNP
rs932449638 578 dbSNP
rs1049927531 582 dbSNP
rs529840909 583 dbSNP
rs971584988 584 dbSNP
rs1407961474 587 dbSNP
rs1005237997 589 dbSNP
rs114983077 591 dbSNP
rs1015689713 598 dbSNP
rs961514090 606 dbSNP
rs189084414 607 dbSNP
rs1418391034 610 dbSNP
rs971291039 614 dbSNP
rs920356988 623 dbSNP
rs11119566 624 dbSNP
rs985781512 627 dbSNP
rs759705050 633 dbSNP
rs1458653513 672 dbSNP
rs910221969 683 dbSNP
rs958086119 684 dbSNP
rs989446360 685 dbSNP
rs1313727010 687 dbSNP
rs944584191 689 dbSNP
rs1380812092 691 dbSNP
rs1040329158 694 dbSNP
rs1312734990 697 dbSNP
rs777246407 713 dbSNP
rs966634923 716 dbSNP
rs924550801 717 dbSNP
rs1460048129 721 dbSNP
rs932498688 723 dbSNP
rs560504332 748 dbSNP
rs1259102344 751 dbSNP
rs144560290 753 dbSNP
rs1054735157 756 dbSNP
rs1206154426 756 dbSNP
rs370487395 759 dbSNP
rs879441610 765 dbSNP
rs1440634320 777 dbSNP
rs534049814 790 dbSNP
rs1187985480 797 dbSNP
rs1419957046 800 dbSNP
rs1480578026 802 dbSNP
rs770319287 808 dbSNP
rs879623534 820 dbSNP
rs1476762129 822 dbSNP
rs1036737833 829 dbSNP
rs1044363060 830 dbSNP
rs765299176 838 dbSNP
rs993778710 838 dbSNP
rs1047067493 840 dbSNP
rs906760401 842 dbSNP
rs1002796926 843 dbSNP
rs907229219 844 dbSNP
rs553771053 847 dbSNP
rs958117173 851 dbSNP
rs749779572 852 dbSNP
rs1363338638 855 dbSNP
rs758961700 857 dbSNP
rs1358766060 860 dbSNP
rs1162494283 863 dbSNP
rs1420716009 865 dbSNP
rs1020942753 867 dbSNP
rs1157332044 868 dbSNP
rs1419068651 871 dbSNP
rs1268650658 880 dbSNP
rs373895347 886 dbSNP
rs897453391 887 dbSNP
rs564984460 890 dbSNP
rs1217687344 892 dbSNP
rs1339175442 896 dbSNP
rs1027575673 903 dbSNP
rs1236596020 907 dbSNP
rs1316287432 908 dbSNP
rs778089079 911 dbSNP
rs532343680 914 dbSNP
rs1343043402 918 dbSNP
rs147839858 925 dbSNP
rs1017252665 932 dbSNP
rs1341870107 935 dbSNP
rs965687695 936 dbSNP
rs1386672639 940 dbSNP
rs1157248172 942 dbSNP
rs1217791796 951 dbSNP
rs376754175 953 dbSNP
rs975768215 967 dbSNP
rs1453420028 970 dbSNP
rs370862392 974 dbSNP
rs1179157251 983 dbSNP
rs1479731073 995 dbSNP
rs985701794 1002 dbSNP
rs748399806 1020 dbSNP
rs1194473552 1025 dbSNP
rs1441421572 1026 dbSNP
rs772361484 1033 dbSNP
rs924519703 1036 dbSNP
rs1259848766 1060 dbSNP
rs569027531 1070 dbSNP
rs192220299 1085 dbSNP
rs1282157719 1087 dbSNP
rs1321295145 1087 dbSNP
rs149711601 1087 dbSNP
rs202073058 1087 dbSNP
rs369810338 1087 dbSNP
rs879169047 1087 dbSNP
rs1227497389 1100 dbSNP
rs1327843434 1101 dbSNP
rs77574468 1101 dbSNP
rs1210984783 1102 dbSNP
rs1259001707 1104 dbSNP
rs1339071359 1106 dbSNP
rs1487302125 1124 dbSNP
rs1192829587 1139 dbSNP
rs1405977869 1141 dbSNP
rs941125000 1143 dbSNP
rs1036770444 1146 dbSNP
rs918279112 1157 dbSNP
rs1476290324 1162 dbSNP
rs1192686141 1169 dbSNP
rs949716487 1178 dbSNP
rs1243567576 1182 dbSNP
rs773265599 1185 dbSNP
rs1170549193 1186 dbSNP
rs1424725358 1190 dbSNP
rs914390651 1196 dbSNP
rs1175664986 1200 dbSNP
rs948807252 1202 dbSNP
rs547848760 1204 dbSNP
rs141131580 1219 dbSNP
rs776778246 1227 dbSNP
rs938682960 1231 dbSNP
rs1037029873 1239 dbSNP
rs1332589440 1249 dbSNP
rs1319588637 1250 dbSNP
rs533500187 1253 dbSNP
rs1394486505 1259 dbSNP
rs1167372516 1262 dbSNP
rs1010972132 1264 dbSNP
rs1387294966 1265 dbSNP
rs1021014707 1270 dbSNP
rs902579493 1271 dbSNP
rs1346786464 1272 dbSNP
rs745500942 1276 dbSNP
rs1182374510 1277 dbSNP
rs1439467852 1280 dbSNP
rs1029625587 1285 dbSNP
rs954138352 1286 dbSNP
rs1027131223 1290 dbSNP
rs7522025 1299 dbSNP
rs1215215314 1302 dbSNP
rs1293411978 1305 dbSNP
rs149868789 1308 dbSNP
rs1448607220 1316 dbSNP
rs1280484050 1321 dbSNP
rs1445045305 1326 dbSNP
rs765208750 1327 dbSNP
rs12727371 1333 dbSNP
rs1017346354 1334 dbSNP
rs1328338926 1335 dbSNP
rs12727379 1343 dbSNP
rs12740785 1345 dbSNP
rs1405567297 1346 dbSNP
rs965822184 1350 dbSNP
rs1161859834 1354 dbSNP
rs1422537879 1365 dbSNP
rs1158897102 1371 dbSNP
rs975738586 1371 dbSNP
rs1196560324 1376 dbSNP
rs1031348881 1388 dbSNP
rs955940972 1394 dbSNP
rs990489364 1409 dbSNP
rs914381973 1412 dbSNP
rs1219861653 1418 dbSNP
rs1358249742 1422 dbSNP
rs949795465 1424 dbSNP
rs752563556 1432 dbSNP
rs1378654988 1433 dbSNP
rs867220581 1441 dbSNP
rs1419196100 1443 dbSNP
rs1349172804 1447 dbSNP
rs1159160776 1448 dbSNP
rs1405659050 1449 dbSNP
rs1387783447 1452 dbSNP
rs1301345997 1455 dbSNP
rs979946213 1459 dbSNP
rs928717266 1466 dbSNP
rs938778313 1467 dbSNP
rs1055288660 1473 dbSNP
rs370116522 1486 dbSNP
rs758092132 1489 dbSNP
rs538527714 1504 dbSNP
rs1036954463 1507 dbSNP
rs918601519 1508 dbSNP
rs17041995 1516 dbSNP
rs115646131 1517 dbSNP
rs1430847836 1519 dbSNP
rs1260738248 1520 dbSNP
rs542358381 1523 dbSNP
rs1196650485 1535 dbSNP
rs17016653 1542 dbSNP
rs1207961469 1551 dbSNP
rs1272359948 1553 dbSNP
rs889781964 1556 dbSNP
rs1445595422 1560 dbSNP
rs768671247 1563 dbSNP
rs1284206689 1565 dbSNP
rs1224713501 1566 dbSNP
rs1007060647 1567 dbSNP
rs1195211432 1574 dbSNP
rs1041268226 1577 dbSNP
rs1362925802 1578 dbSNP
rs12746068 1597 dbSNP
rs565709180 1602 dbSNP
rs901559177 1610 dbSNP
rs144884382 1620 dbSNP
rs1343269039 1639 dbSNP
rs111332046 1641 dbSNP
rs1025443471 1646 dbSNP
rs774126010 1650 dbSNP
rs1011268570 1652 dbSNP
rs1432021799 1659 dbSNP
rs1419824201 1669 dbSNP
rs1187856236 1679 dbSNP
rs971592092 1680 dbSNP
rs1204705475 1690 dbSNP
rs1463368995 1693 dbSNP
rs546176371 1696 dbSNP
rs1397685649 1697 dbSNP
rs937002676 1698 dbSNP
rs1308103455 1705 dbSNP
rs1275182520 1707 dbSNP
rs989747666 1709 dbSNP
rs570741871 1712 dbSNP
rs915503396 1716 dbSNP
rs970035717 1718 dbSNP
rs1453020787 1722 dbSNP
rs979872605 1723 dbSNP
rs928475895 1724 dbSNP
rs960090641 1730 dbSNP
rs1354659344 1732 dbSNP
rs1042576948 1733 dbSNP
rs1389154350 1734 dbSNP
rs564494042 1734 dbSNP
rs902672811 1734 dbSNP
rs918709300 1735 dbSNP
rs1446782222 1744 dbSNP
rs1051170952 1749 dbSNP
rs1181842219 1750 dbSNP
rs1481229855 1753 dbSNP
rs931289596 1756 dbSNP
rs1202514582 1767 dbSNP
rs1336980806 1772 dbSNP
rs1307145641 1773 dbSNP
rs1292685598 1775 dbSNP
rs1048428299 1779 dbSNP
rs768471948 1783 dbSNP
rs1361267356 1784 dbSNP
rs1395422782 1797 dbSNP
rs527872590 1797 dbSNP
rs1292619584 1800 dbSNP
rs1299441073 1801 dbSNP
rs1038345424 1803 dbSNP
rs898417938 1803 dbSNP
rs994081313 1807 dbSNP
rs1163774098 1813 dbSNP
rs182919426 1814 dbSNP
rs750373266 1823 dbSNP
rs1383824435 1828 dbSNP
rs971240117 1834 dbSNP
rs942938729 1842 dbSNP
rs1041194352 1847 dbSNP
rs1034118425 1861 dbSNP
rs548017284 1865 dbSNP
rs1482744448 1868 dbSNP
rs1269894653 1875 dbSNP
rs1225062795 1890 dbSNP
rs1489911722 1893 dbSNP
rs1263524552 1908 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HEK293S
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in GSM1084064. RNA binding protein: AGO2. Condition:CLIP_noemetine_AbnovaAb HITS-CLIP data was present in GSM1084065. RNA binding protein: AGO2. Condition:CLIP_emetine_AbnovaAb HITS-CLIP data was present in GSM1084068. RNA binding protein: AGO2. Condition:CLIP_noemetine_SigmaAb HITS-CLIP data was present in GSM1084073. RNA binding protein: AGO2. Condition:CLIP_hippuristanol_rep1_AbnovaAb HITS-CLIP data was present in GSM1084079. RNA binding protein: AGO2. Condition:CLIP_hippuristanol_rep2_AbnovaAb ...

- Karginov FV; Hannon GJ, 2013, Genes & development.

Article - Karginov FV; Hannon GJ
- Genes & development, 2013
When adapting to environmental stress, cells attenuate and reprogram their translational output. In part, these altered translation profiles are established through changes in the interactions between RNA-binding proteins and mRNAs. The Argonaute 2 (Ago2)/microRNA (miRNA) machinery has been shown to participate in stress-induced translational up-regulation of a particular mRNA, CAT-1; however, a detailed, transcriptome-wide understanding of the involvement of Ago2 in the process has been lacking. Here, we profiled the overall changes in Ago2-mRNA interactions upon arsenite stress by cross-linking immunoprecipitation (CLIP) followed by high-throughput sequencing (CLIP-seq). Ago2 displayed a significant remodeling of its transcript occupancy, with the majority of 3' untranslated region (UTR) and coding sequence (CDS) sites exhibiting stronger interaction. Interestingly, target sites that were destined for release from Ago2 upon stress were depleted in miRNA complementarity signatures, suggesting an alternative mode of interaction. To compare the changes in Ago2-binding patterns across transcripts with changes in their translational states, we measured mRNA profiles on ribosome/polysome gradients by RNA sequencing (RNA-seq). Increased Ago2 occupancy correlated with stronger repression of translation for those mRNAs, as evidenced by a shift toward lighter gradient fractions upon stress, while release of Ago2 was associated with the limited number of transcripts that remained translated. Taken together, these data point to a role for Ago2 and the mammalian miRNAs in mediating the translational component of the stress response.
LinkOut: [PMID: 23824327]
CLIP-seq Support 1 for dataset GSM1084064
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_noemetine_AbnovaAb
Location of target site ENST00000413764.2 | 3UTR | AGCAGCUGUCUUGGUAAAGGAGAGAGAGAGAC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM1084065
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_emetine_AbnovaAb
Location of target site ENST00000413764.2 | 3UTR | AGCAGCUGUCUUGGUAAAGGAGAGAGAGAGACAU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
CLIP-seq Support 3 for dataset GSM1084068
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_noemetine_SigmaAb
Location of target site ENST00000413764.2 | 3UTR | UAAAGGAGAGAGAGAGACAU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
CLIP-seq Support 4 for dataset GSM1084073
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_hippuristanol_rep1_AbnovaAb
Location of target site ENST00000413764.2 | 3UTR | GUAAAGGAGAGAGAGAGAC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
CLIP-seq Support 5 for dataset GSM1084079
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_hippuristanol_rep2_AbnovaAb
Location of target site ENST00000413764.2 | 3UTR | AAAGGAGAGAGAGAGAC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
150 hsa-miR-6818-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT112122 TIMM17A translocase of inner mitochondrial membrane 17A 2 6
MIRT262243 BAMBI BMP and activin membrane bound inhibitor 2 2
MIRT446689 MCF2L2 MCF.2 cell line derived transforming sequence-like 2 2 2
MIRT449923 TPST2 tyrosylprotein sulfotransferase 2 2 2
MIRT464356 USP12P1 ubiquitin specific peptidase 12 pseudogene 1 2 2
MIRT485703 CBX7 chromobox 7 2 2
MIRT497478 XPR1 xenotropic and polytropic retrovirus receptor 1 2 4
MIRT499435 ODF2L outer dense fiber of sperm tails 2 like 2 8
MIRT514246 S1PR2 sphingosine-1-phosphate receptor 2 2 2
MIRT515032 EBNA1BP2 EBNA1 binding protein 2 2 2
MIRT515065 PLA2G2C phospholipase A2 group IIC 2 2
MIRT520235 USP9X ubiquitin specific peptidase 9, X-linked 2 4
MIRT523685 FHL2 four and a half LIM domains 2 2 4
MIRT525524 FSIP2 fibrous sheath interacting protein 2 2 2
MIRT525838 FAR2 fatty acyl-CoA reductase 2 2 2
MIRT528583 PTGER3 prostaglandin E receptor 3 2 2
MIRT530404 SULT1B1 sulfotransferase family 1B member 1 2 2
MIRT530703 RNMTL1 mitochondrial rRNA methyltransferase 3 2 2
MIRT535118 PLSCR4 phospholipid scramblase 4 2 2
MIRT539880 IRGQ immunity related GTPase Q 2 2
MIRT540195 ARHGAP18 Rho GTPase activating protein 18 2 2
MIRT540938 SLC25A43 solute carrier family 25 member 43 2 2
MIRT541501 TOR1AIP1 torsin 1A interacting protein 1 2 2
MIRT542544 MRPS10 mitochondrial ribosomal protein S10 2 2
MIRT542559 ZNF280B zinc finger protein 280B 2 2
MIRT542689 RPS15A ribosomal protein S15a 2 2
MIRT548759 CNNM3 cyclin and CBS domain divalent metal cation transport mediator 3 2 2
MIRT549735 MAPKAPK5 mitogen-activated protein kinase-activated protein kinase 5 2 2
MIRT553060 ULK1 unc-51 like autophagy activating kinase 1 2 2
MIRT556303 MAP2K4 mitogen-activated protein kinase kinase 4 2 2
MIRT560816 DIP2A disco interacting protein 2 homolog A 2 2
MIRT567455 GLTSCR1 BRD4 interacting chromatin remodeling complex associated protein 2 2
MIRT575143 Cd93 CD93 antigen 2 2
MIRT607217 ACSM2A acyl-CoA synthetase medium chain family member 2A 2 4
MIRT607286 CD300E CD300e molecule 2 6
MIRT607302 RREB1 ras responsive element binding protein 1 2 6
MIRT608645 ABCF3 ATP binding cassette subfamily F member 3 2 4
MIRT611095 MYO1F myosin IF 2 4
MIRT611576 CLEC4D C-type lectin domain family 4 member D 2 2
MIRT614271 WSCD2 WSC domain containing 2 2 2
MIRT614855 PLEKHA6 pleckstrin homology domain containing A6 2 2
MIRT617114 KANK2 KN motif and ankyrin repeat domains 2 2 2
MIRT618002 SLC9A3R2 SLC9A3 regulator 2 2 2
MIRT618028 CTU1 cytosolic thiouridylase subunit 1 2 2
MIRT619062 BSND barttin CLCNK type accessory beta subunit 2 4
MIRT619289 FAM26E calcium homeostasis modulator family member 5 2 2
MIRT619356 CFHR5 complement factor H related 5 2 2
MIRT620725 CCL16 C-C motif chemokine ligand 16 2 2
MIRT620913 LRRTM2 leucine rich repeat transmembrane neuronal 2 2 2
MIRT621902 TAB1 TGF-beta activated kinase 1 (MAP3K7) binding protein 1 2 2
MIRT622025 STAT5A signal transducer and activator of transcription 5A 2 2
MIRT622556 PTPN3 protein tyrosine phosphatase, non-receptor type 3 2 2
MIRT623137 NCKAP1 NCK associated protein 1 2 2
MIRT623140 NAV2 neuron navigator 2 2 2
MIRT623701 HHAT hedgehog acyltransferase 2 2
MIRT624602 B3GALT5 beta-1,3-galactosyltransferase 5 2 2
MIRT625944 OLIG3 oligodendrocyte transcription factor 3 2 2
MIRT625988 SPATA17 spermatogenesis associated 17 2 2
MIRT628028 LSAMP limbic system-associated membrane protein 2 2
MIRT635521 MC2R melanocortin 2 receptor 2 2
MIRT638916 CALCOCO2 calcium binding and coiled-coil domain 2 2 2
MIRT639796 EPX eosinophil peroxidase 2 2
MIRT640344 C1orf210 chromosome 1 open reading frame 210 2 2
MIRT644806 VLDLR very low density lipoprotein receptor 2 2
MIRT645303 AGTRAP angiotensin II receptor associated protein 2 2
MIRT645629 SYTL4 synaptotagmin like 4 2 2
MIRT645683 TBC1D13 TBC1 domain family member 13 2 2
MIRT646216 DUSP10 dual specificity phosphatase 10 2 2
MIRT648505 PIGG phosphatidylinositol glycan anchor biosynthesis class G 2 2
MIRT649748 UTP20 UTP20, small subunit processome component 2 2
MIRT649797 CLEC2D C-type lectin domain family 2 member D 2 2
MIRT650482 UFM1 ubiquitin fold modifier 1 2 2
MIRT653199 SP9 Sp9 transcription factor 2 2
MIRT655741 NR2F2 nuclear receptor subfamily 2 group F member 2 2 2
MIRT659978 C2CD2L C2CD2 like 2 2
MIRT660350 BAG4 BCL2 associated athanogene 4 2 2
MIRT662185 MEI1 meiotic double-stranded break formation protein 1 2 2
MIRT663290 TECPR2 tectonin beta-propeller repeat containing 2 2 2
MIRT666817 PRCP prolylcarboxypeptidase 2 2
MIRT671665 HEYL hes related family bHLH transcription factor with YRPW motif-like 2 2
MIRT671838 PDE3A phosphodiesterase 3A 2 2
MIRT672193 F2 coagulation factor II, thrombin 2 2
MIRT673870 KLF2 Kruppel like factor 2 2 2
MIRT683563 CARD8 caspase recruitment domain family member 8 2 2
MIRT684545 ZNF708 zinc finger protein 708 2 2
MIRT685140 TACR3 tachykinin receptor 3 2 2
MIRT685413 ACAD8 acyl-CoA dehydrogenase family member 8 2 2
MIRT686039 SLC5A5 solute carrier family 5 member 5 2 2
MIRT686126 B4GALT7 beta-1,4-galactosyltransferase 7 2 2
MIRT687473 NHLRC2 NHL repeat containing 2 2 2
MIRT687946 HHIP hedgehog interacting protein 2 2
MIRT688171 FRRS1 ferric chelate reductase 1 2 2
MIRT688295 FAM208A family with sequence similarity 208 member A 2 2
MIRT689044 AMD1 adenosylmethionine decarboxylase 1 2 2
MIRT689194 ZNF574 zinc finger protein 574 2 2
MIRT691253 ICOSLG inducible T-cell costimulator ligand 2 2
MIRT695358 PHAX phosphorylated adaptor for RNA export 2 2
MIRT696674 APOC3 apolipoprotein C3 2 2
MIRT697358 ZNF394 zinc finger protein 394 2 2
MIRT697604 XIAP X-linked inhibitor of apoptosis 2 2
MIRT697726 USP6NL USP6 N-terminal like 2 2
MIRT697776 UBXN7 UBX domain protein 7 2 2
MIRT698478 TIAL1 TIA1 cytotoxic granule associated RNA binding protein like 1 2 2
MIRT698984 SPAG9 sperm associated antigen 9 2 2
MIRT699851 SAR1B secretion associated Ras related GTPase 1B 2 2
MIRT700172 RIMKLB ribosomal modification protein rimK like family member B 2 2
MIRT704339 DCAF16 DDB1 and CUL4 associated factor 16 2 2
MIRT704589 CLN8 CLN8, transmembrane ER and ERGIC protein 2 2
MIRT705836 AHCY adenosylhomocysteinase 2 2
MIRT707085 TIMM50 translocase of inner mitochondrial membrane 50 2 2
MIRT707132 TRA2B transformer 2 beta homolog 2 2
MIRT707145 C17orf105 chromosome 17 open reading frame 105 2 2
MIRT707234 H6PD hexose-6-phosphate dehydrogenase/glucose 1-dehydrogenase 2 2
MIRT707347 XPNPEP3 X-prolyl aminopeptidase 3 2 2
MIRT707445 PPFIBP1 PPFIA binding protein 1 2 2
MIRT707494 AXL AXL receptor tyrosine kinase 2 2
MIRT707638 CRIPT CXXC repeat containing interactor of PDZ3 domain 2 2
MIRT707690 FAM118A family with sequence similarity 118 member A 2 2
MIRT707706 CDC6 cell division cycle 6 2 2
MIRT707817 TMEM170A transmembrane protein 170A 2 2
MIRT707957 PDK3 pyruvate dehydrogenase kinase 3 2 2
MIRT707996 NUDT4 nudix hydrolase 4 2 2
MIRT708026 MRPS14 mitochondrial ribosomal protein S14 2 2
MIRT708058 LIX1L limb and CNS expressed 1 like 2 2
MIRT708089 KIAA1671 KIAA1671 2 2
MIRT708125 GK5 glycerol kinase 5 (putative) 2 2
MIRT708194 ANP32E acidic nuclear phosphoprotein 32 family member E 2 2
MIRT708201 AHSA2 activator of HSP90 ATPase homolog 2 2 2
MIRT710503 BSDC1 BSD domain containing 1 2 2
MIRT711308 IFNGR2 interferon gamma receptor 2 2 2
MIRT711740 DTX1 deltex E3 ubiquitin ligase 1 2 2
MIRT713202 SOCS6 suppressor of cytokine signaling 6 2 2
MIRT714380 PDP2 pyruvate dehyrogenase phosphatase catalytic subunit 2 2 2
MIRT715210 NPVF neuropeptide VF precursor 2 2
MIRT715559 EPHB4 EPH receptor B4 2 2
MIRT715835 SZT2 SZT2, KICSTOR complex subunit 2 2
MIRT716680 HLA-B major histocompatibility complex, class I, B 2 2
MIRT717660 THBS2 thrombospondin 2 2 2
MIRT718132 PALM paralemmin 2 2
MIRT718322 METTL7A methyltransferase like 7A 2 2
MIRT720693 RNF217 ring finger protein 217 2 2
MIRT720727 ELOVL7 ELOVL fatty acid elongase 7 2 2
MIRT721376 MACC1 MACC1, MET transcriptional regulator 2 2
MIRT721983 FAM214B family with sequence similarity 214 member B 2 2
MIRT722163 MRPS15 mitochondrial ribosomal protein S15 2 2
MIRT722881 MOB3A MOB kinase activator 3A 2 2
MIRT723218 FMNL3 formin like 3 2 2
MIRT723788 MUC17 mucin 17, cell surface associated 2 2
MIRT724093 TMEM199 transmembrane protein 199 2 2
MIRT725265 OSTM1 osteopetrosis associated transmembrane protein 1 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-6818-3p Paclitaxel 36314 NSC125973 approved sensitive cell line (A2780)
hsa-miR-6818-3p Cisplatin 5460033 NSC119875 approved sensitive cell line (A2780)
hsa-miR-6818-3p Cisplatin 5460033 NSC119875 approved resistant cell line (MGC-803)

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