pre-miRNA Information
pre-miRNA hsa-mir-2355   
Genomic Coordinates chr2: 207109987 - 207110073
Description Homo sapiens miR-2355 stem-loop
Comment None
RNA Secondary Structure
Associated Diseases

Mature miRNA Information
Mature miRNA hsa-miR-2355-5p
Sequence 11| AUCCCCAGAUACAAUGGACAA |31
Evidence Experimental
Experiments SOLiD
Editing Events in miRNAs
Modification Type Position on miR Chromosome DNA Strand Genomic Position (hg38) List of PMIDs Variant details
A-to-I 1 2 - 207110063 29233923 MiREDiBase
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1268296297 4 dbSNP
rs1361046879 5 dbSNP
rs1219551997 6 dbSNP
rs1295756820 12 dbSNP
rs1345273529 15 dbSNP
rs977145706 15 dbSNP
rs1209629984 20 dbSNP
rs759940260 21 dbSNP
Putative Targets

miRNA Expression profile
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol FNBP1L   
Synonyms C1orf39, TOCA1
Description formin binding protein 1 like
Transcript NM_001024948   
Other Transcripts NM_001164473 , NM_017737   
Expression
Putative miRNA Targets on FNBP1L
3'UTR of FNBP1L
(miRNA target sites are highlighted)
>FNBP1L|NM_001024948|3'UTR
   1 ACTAACCAGGCACCTTTGTGCCATGTGTGACATAGGAAGAGTAACATAAAATGAAAACACATTCAACAGGTTGAAAAAAA
  81 TAAGGAAACTTAAAGGGCATCCAAGATTAATTGTTCACTATGTGAGCTGAGTGTAGGCTTGATCTTGTGAATATTACCAC
 161 AAGAAACATTTTGTGGCACTTTACTGTTTGAGTAACGTTGGTGTGAAGCTTAATTGATGCCTTTTGCTTTATGTCCCGCT
 241 TAAGTCTGTGTGAAGGATTTGTGTTTTTCTGCCTTACAAATAGAATTTGATTTATTGGGCAGGAATTCATGGATAGTAAT
 321 GCTCTCTGCCCCCTTTACTTCAGAAAACACAGTGACTTTAGTGAATTTGAATAGTGAAACTGCTCTGAAATGCTATGGAA
 401 AGCCGACTCCCCAAAGAGTGGTTTCTTCTAGAAGTTTGAATTTGTAGCTACAGTTTCCAAGAAGAAAAATAGTAGTTGGA
 481 TAATTTAGTAAAATAATAACATCATTTTCATTTTCTTACCTATTCTTAACTTTGGTTTCCTAAAGGAAGAAAATGAGCAG
 561 GTAGCACATAATCTATTTAAGTAGATTTAAAGAGAGTTTCAAAATAAATCTCCTGGTCTAGCTCTTAGGTGAATAAAATA
 641 GATTTTGTTTGAGACCTCAAAATATTTTGAGGTTAGCTGGTAATTTTCAATAATTTACAAGCTTCCTTCCAAACTAATCT
 721 CATACTTTTGTATGTTTCATCTTGAAAATATCTTTTGGGAAATACCACTTTAGTGATTATTTAGCATTTAGCAGTTACAC
 801 ATAGGAAAATACACAGTTACATAGAAAAATACACATTTGAAGATAGAGGAAACCTTGAATGGAGGGGAAGTGTTGACAAA
 881 TTTTAATTTTTAAAGGAGAAACTTTTTGACTATCTGGGTTAGAGGAAGATATGTGTACCGCCTTTAGGGCATTTTGTTAT
 961 TTCCGCTGAATCATTAGTTATTAGGATAGATAAATTTTTCCAATTAGTTTCAGCAAGCGTTGTTGGAAACACTGTGCAGT
1041 CAAGGATTGTGCAGTGCTGGTTGTGTGACCACACCCTGAGTCAGTGGTGTGGGGAAGTAAAGTGTGAAGAAGCAGTAAGA
1121 TTGGTTTTTAATTTTGCCCATGTTTTAAATTTTCCTGGTGTTTTCGGTAGCTGACTATAAAATGATAGAGACATTTGGGA
1201 CAGGCACTTTAAACTGAACACCCCTTTTGGTTTTACCAAAGGTCTTCAGTAATTGTTCTTTTCTTTTTCCTCCTGGACTG
1281 CAGGTTCCTGAAGAGGGTTTCTGAGGAAATGGGCAAGATGTTGAAGGAGGTTACATGCAGCTGCTTTTGGGGGAGGGTAT
1361 TAGAGTTGTCAGGCTCAAAGAGAGTGAGAGAAGCAAGTTGCATGAGTGCATGCAGACATGATTTTTTTTTTACTAACTTC
1441 ATTAGCATTTCCATACATTGTTTTTAAAAATCATAATACCAACCCTTAAGTTCCTAGTTCACAGTTATTCCCACAAAAGA
1521 AAAAGCCAACAATAGTGTACCATTTTTCTATTTATTTTATTGCTGTCTAATCAATAAAGAATGCAGAGCTGTCAAAAAAT
1601 GTGTCTTACATTAGCTGTCCCAACAGGATTGTCTTCCCTCCCAGCTCTGTTTTAATTGGCTTTTAGACCCACTATCTGTC
1681 AGATCCTTGCCATCTGTCAGTGTCTGCCTGCGCCACCTCCGTGCTTGCTTAACATCCTGTTGCATGTCTAGCGTGATTGA
1761 GCTAGATTTTTCAGGCATGTCTTTAGATTCCCTTGTTCTTGTCAAAGCCTTGTTTTGTTTTACATTTGTAGTGCAAATCA
1841 CTTTGTCAAACATCTCCAGCACTAATGTTTCCATCTTAGTATTTGTGCACACTGCTATAACTTCCCCACTGCAAACATTC
1921 CAGTTTTGGCATTACGAAGAAGTAGCTGTGAACCTGAAGTATTTATGATAAGAAAAAGAAAACATCTCTGCTGTAGCCTA
2001 CAGCCCAGTTGAAAGAACTCTTTGAAACGTGATACATCTTCAGCACCTCAGTCTGGGAAGAATCTAGTCAGCACTGAAAT
2081 CCTGGCATAATAAACACAGAAGATATTCACCACCTCAAGACAAAGGACTATTGTCAAAAGTCAGCTGCTTCCATTCAAAT
2161 GCTGCCTTAAACTTGAGTGCCTAAATCTGTTGATTGCCAACACTACCACTACAGTATCCCACAAAGGGCTTTATGTGTCA
2241 GCTCAGTGCGACCTGCTTTAACTCTGCAGCACCGCTGCAGCTGCCGATGTAGCCTCGGTAGGTGGCTATTAGAGCTCTAC
2321 CATATACAGTGGTGCATCTTCAAATTTATGCATCAAACTAAAGACATGTCCAAGTCCATTTTAATTTCCTCAGTGGTTTT
2401 ATGAGAAGTTTTATGGGCCTCCCCCAATTGTCTTTTTATTTTGGGTTATGACGATCATGTTTGATAATTACAATGATAGT
2481 CTCTTTCCACGTGATGCTTTTGTTTGAACCTGATAAAATTTAGTGAAACTTTGTAATGATCTATGTGCACTTTTACTTGT
2561 AAAATGGAATTTCTGTATGTTTATACTTGTAAATATGATTGTTGTTAGTGCTCCTGTTGCTCATGGTGTCCTGCCTCGCA
2641 TTTGTGATTCTGTTAATGACATGTATCTTAACTAATTTCTTAGTGGTGTTGTAATAGGGAGATGGGGCAGGTGGGGGGTT
2721 ATTTGTACCACTGAATCTTCATTAATTTGGTTCTTTACTGTTTTGAGGGGAGAAAGAACGTGAAATGGTTTGTGTATTAT
2801 TGAATTTTAAGCAATATTTTAGAAGCTGTGTGACTGCTTTAATAACTTTTTCCCAGTGTTATTTGAATCATACTACCCGT
2881 TATACTAAAGCTGAATGACAATTGTGTGAAAGTTACTGCCTTCATAAGATCAAGTCACCACTGTTACACAGCTGACATAT
2961 AGTGTATTACCTTTGCAGCTAGTAAACTATAAAGTTTAGATATTGAATCTCGTTACAGGGTTATTTATATAATGTGACAT
3041 TATTCAGTACTGACAGACTACATGAAGTAGTTTTAAAATCTAGTGCTATTTTTATTTTAAAGGTTAGCAATGAGGAGGAA
3121 ATGTGATCTGGCTGTGTTTGTCTTCTGTACAAAGCCTGAAGTGCTTATGGTTTTTTGGCTAACAGCCACAGAGGGCAAAG
3201 TTTAAGACTTTCTTGTAAGGACTAACTGTTCTTTTCAAGCTACTGTTTGTTTTTCTAAAAGCAGGATTTGCTTCCGTAGG
3281 AGGCAAGTTCCTTGATGTGGAATAGTGCAACCTGTATATGGGTTATTATAATAGGAAAGACATTTGTACTTGCACAGTTT
3361 AAATCATTCTTAAATTTTGAACATGTGAATTGTCCCAAAAAATCTTTAATTTTTTGGTAATTTTTACTCTTTTTGTGCAC
3441 ATGTTGATTTCTTAATGGTAAATCCTTCATTTAAAGATAGTGTTCTCTGTTGAGAATATTTACATGGAATAAAACAATCT
3521 TTTCATGGCCTGTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' aaCAGGUAACAUAGACCCCUa 5'
            ||| :| ||:  |||||| 
Target 5' gaGTCAGTGGTG--TGGGGAa 3'
1078 - 1096 130.00 -15.20
2
miRNA  3' aacagguAAC--AUAGACCCcua 5'
                 |||  ||||||||   
Target 5' aaactttTTGACTATCTGGGtta 3'
899 - 921 120.00 -10.22
3
miRNA  3' aacagguaaCAUAGACCCCUa 5'
                   || |||| ||| 
Target 5' ctgaagaggGTTTCTGAGGAa 3'
1288 - 1308 120.00 -8.30
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN31512667 10 COSMIC
COSN30512002 15 COSMIC
COSN31567299 22 COSMIC
COSN30549045 36 COSMIC
COSN30117374 76 COSMIC
COSN30135294 87 COSMIC
COSN31593171 98 COSMIC
COSN16421736 396 COSMIC
COSN21105030 891 COSMIC
COSN20255408 913 COSMIC
COSN31599651 997 COSMIC
COSN31581152 1134 COSMIC
COSN30509219 1174 COSMIC
COSN31491890 1180 COSMIC
COSN31543755 1215 COSMIC
COSN30150713 1248 COSMIC
COSN30151766 1259 COSMIC
COSM7676610 1284 COSMIC
COSM5418017 1289 COSMIC
COSN26976580 1314 COSMIC
COSN26642777 1318 COSMIC
COSN30107423 1336 COSMIC
COSN31508969 1344 COSMIC
COSN18725309 1350 COSMIC
COSN31505046 1374 COSMIC
COSN13567908 1377 COSMIC
COSN30146509 1377 COSMIC
COSN31612609 1418 COSMIC
COSN30166597 1421 COSMIC
COSN25183532 1432 COSMIC
COSN30143854 1453 COSMIC
COSN30150932 1473 COSMIC
COSN30151763 1473 COSMIC
COSN20592917 1691 COSMIC
COSN1463856 1704 COSMIC
COSN26297805 1897 COSMIC
COSN28200929 2074 COSMIC
COSN30174028 2117 COSMIC
COSN31528807 2130 COSMIC
COSN30539955 2229 COSMIC
COSN29286972 2274 COSMIC
COSN31537230 2275 COSMIC
COSN28742821 2309 COSMIC
COSN21205304 2327 COSMIC
COSN31485670 2412 COSMIC
COSN505812 2463 COSMIC
COSN31517146 2484 COSMIC
COSN30161571 2542 COSMIC
COSN15258826 2544 COSMIC
COSN10056433 2568 COSMIC
COSN26565838 2576 COSMIC
COSN8638891 2607 COSMIC
COSN24865887 2745 COSMIC
COSN31607268 2754 COSMIC
COSN31583167 2763 COSMIC
COSN31485872 2808 COSMIC
COSN1110247 2985 COSMIC
COSN30161552 3046 COSMIC
COSN31547962 3098 COSMIC
COSN22837148 3118 COSMIC
COSN21688963 3192 COSMIC
COSN31553659 3209 COSMIC
COSN16875065 3228 COSMIC
COSN6952928 3276 COSMIC
COSN19379859 3278 COSMIC
COSN19661250 3287 COSMIC
COSN31485621 3377 COSMIC
rs114771147 2880 GWAS
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs570256993 3 dbSNP
rs1393829557 4 dbSNP
rs767701423 5 dbSNP
rs767575006 8 dbSNP
rs781290633 14 dbSNP
rs1215455824 18 dbSNP
rs375948493 22 dbSNP
rs1276495170 23 dbSNP
rs1389303633 23 dbSNP
rs1327816722 26 dbSNP
rs754258242 28 dbSNP
rs755230307 30 dbSNP
rs370922979 31 dbSNP
rs1347065748 32 dbSNP
rs779405440 33 dbSNP
rs1347976657 40 dbSNP
rs1251952581 43 dbSNP
rs1164005905 44 dbSNP
rs1481686681 45 dbSNP
rs1477999255 48 dbSNP
rs941882401 57 dbSNP
rs1478476768 60 dbSNP
rs1425551211 71 dbSNP
rs1193949181 73 dbSNP
rs1477320088 82 dbSNP
rs1376699897 83 dbSNP
rs1477942829 90 dbSNP
rs1211188550 92 dbSNP
rs547447336 98 dbSNP
rs1265321420 99 dbSNP
rs1199856609 100 dbSNP
rs1320413232 101 dbSNP
rs1055201763 112 dbSNP
rs1256613178 113 dbSNP
rs1427926124 119 dbSNP
rs895257655 121 dbSNP
rs536118325 126 dbSNP
rs1385091165 131 dbSNP
rs1298080743 132 dbSNP
rs1292834025 138 dbSNP
rs1358719026 163 dbSNP
rs41292645 168 dbSNP
rs1402174320 194 dbSNP
rs975921502 196 dbSNP
rs1377777211 197 dbSNP
rs921759165 197 dbSNP
rs1200566975 198 dbSNP
rs1430909918 202 dbSNP
rs1266099191 204 dbSNP
rs1230861948 215 dbSNP
rs1276425003 238 dbSNP
rs188971505 239 dbSNP
rs1345408068 247 dbSNP
rs931946953 249 dbSNP
rs1239347217 251 dbSNP
rs1346164371 252 dbSNP
rs1044008153 256 dbSNP
rs1231381082 258 dbSNP
rs904542192 272 dbSNP
rs115645229 275 dbSNP
rs541495344 284 dbSNP
rs12133060 286 dbSNP
rs181615097 289 dbSNP
rs369683346 290 dbSNP
rs1266277779 294 dbSNP
rs1449491640 305 dbSNP
rs1173935931 308 dbSNP
rs1024499011 316 dbSNP
rs906011137 318 dbSNP
rs373416561 325 dbSNP
rs138621212 332 dbSNP
rs1178590460 333 dbSNP
rs1443316902 334 dbSNP
rs56045377 343 dbSNP
rs1258752751 351 dbSNP
rs1198927688 357 dbSNP
rs1454937037 362 dbSNP
rs768109840 362 dbSNP
rs1483082730 363 dbSNP
rs1028296577 370 dbSNP
rs951747200 372 dbSNP
rs1306929889 375 dbSNP
rs983043586 396 dbSNP
rs1340819408 397 dbSNP
rs1378999359 405 dbSNP
rs1393925141 406 dbSNP
rs1421640932 431 dbSNP
rs1298441592 438 dbSNP
rs1014535209 448 dbSNP
rs1159200980 449 dbSNP
rs965807133 451 dbSNP
rs975791751 462 dbSNP
rs184723824 469 dbSNP
rs1185958296 471 dbSNP
rs1325705371 480 dbSNP
rs1264101854 481 dbSNP
rs1219101710 487 dbSNP
rs931785351 491 dbSNP
rs557163537 492 dbSNP
rs1445753623 493 dbSNP
rs979377372 496 dbSNP
rs925160054 521 dbSNP
rs1307075644 523 dbSNP
rs1354602274 530 dbSNP
rs1278388116 533 dbSNP
rs1401508798 535 dbSNP
rs1358051388 539 dbSNP
rs1355722884 543 dbSNP
rs1406460377 563 dbSNP
rs935230003 568 dbSNP
rs1053151730 571 dbSNP
rs141634435 572 dbSNP
rs1424827767 574 dbSNP
rs575657328 576 dbSNP
rs542515478 581 dbSNP
rs906048952 583 dbSNP
rs1199586725 586 dbSNP
rs1453410975 591 dbSNP
rs1291871490 596 dbSNP
rs1178378507 610 dbSNP
rs1333838485 619 dbSNP
rs1236936683 621 dbSNP
rs561237365 624 dbSNP
rs1220075217 628 dbSNP
rs1183120981 629 dbSNP
rs1269238059 643 dbSNP
rs1436501572 644 dbSNP
rs1332341293 656 dbSNP
rs531504695 661 dbSNP
rs1027913002 666 dbSNP
rs550014135 669 dbSNP
rs1461421723 672 dbSNP
rs1401463250 683 dbSNP
rs1367972550 684 dbSNP
rs753679900 691 dbSNP
rs1418996291 692 dbSNP
rs1173395952 696 dbSNP
rs1014567717 703 dbSNP
rs1245094638 720 dbSNP
rs1196640381 723 dbSNP
rs1468026269 726 dbSNP
rs965655155 729 dbSNP
rs564956271 730 dbSNP
rs1395484960 731 dbSNP
rs1315852389 740 dbSNP
rs1464939941 749 dbSNP
rs1219480777 752 dbSNP
rs1346468897 755 dbSNP
rs112846839 762 dbSNP
rs1440812279 765 dbSNP
rs1378209422 766 dbSNP
rs41292647 770 dbSNP
rs1391925795 779 dbSNP
rs979710101 790 dbSNP
rs1177015556 800 dbSNP
rs1338204995 806 dbSNP
rs1246349323 807 dbSNP
rs1173169141 813 dbSNP
rs1440406982 816 dbSNP
rs146199562 821 dbSNP
rs1479513694 822 dbSNP
rs1316899288 823 dbSNP
rs1196316693 840 dbSNP
rs189552420 845 dbSNP
rs1443852105 858 dbSNP
rs1276071973 860 dbSNP
rs988042089 870 dbSNP
rs913247014 871 dbSNP
rs1238656060 875 dbSNP
rs114413911 879 dbSNP
rs567966587 880 dbSNP
rs1450464297 885 dbSNP
rs538033568 896 dbSNP
rs1357579911 899 dbSNP
rs1312516083 900 dbSNP
rs927334442 906 dbSNP
rs1362572998 907 dbSNP
rs1160352587 913 dbSNP
rs1256047892 921 dbSNP
rs1406971533 925 dbSNP
rs1408639149 926 dbSNP
rs1473663297 930 dbSNP
rs1422202103 932 dbSNP
rs937432707 940 dbSNP
rs1418906128 941 dbSNP
rs1488311916 950 dbSNP
rs1287599293 954 dbSNP
rs1215065981 957 dbSNP
rs577311457 959 dbSNP
rs887927703 960 dbSNP
rs1230334799 965 dbSNP
rs181500509 966 dbSNP
rs1292861545 973 dbSNP
rs1400885769 992 dbSNP
rs1462251064 1001 dbSNP
rs1362517816 1002 dbSNP
rs1302263288 1004 dbSNP
rs1399944433 1006 dbSNP
rs571404165 1007 dbSNP
rs1036549714 1019 dbSNP
rs760004918 1019 dbSNP
rs1397319329 1020 dbSNP
rs1186750075 1024 dbSNP
rs1477975144 1032 dbSNP
rs1264704461 1033 dbSNP
rs1293399352 1033 dbSNP
rs768301157 1039 dbSNP
rs901520979 1055 dbSNP
rs997105751 1060 dbSNP
rs1279638455 1063 dbSNP
rs1224468759 1064 dbSNP
rs1028651170 1070 dbSNP
rs538787076 1071 dbSNP
rs372670220 1073 dbSNP
rs1273004229 1075 dbSNP
rs1342533466 1076 dbSNP
rs185879842 1076 dbSNP
rs1411907498 1085 dbSNP
rs953287114 1088 dbSNP
rs1368436303 1100 dbSNP
rs1294007702 1102 dbSNP
rs1000600516 1106 dbSNP
rs1391995790 1116 dbSNP
rs1164034788 1120 dbSNP
rs1032616026 1125 dbSNP
rs1425257271 1129 dbSNP
rs1167909351 1132 dbSNP
rs1427368812 1140 dbSNP
rs956500359 1141 dbSNP
rs1205653128 1151 dbSNP
rs988076763 1155 dbSNP
rs1252761260 1159 dbSNP
rs138042318 1166 dbSNP
rs1320467243 1167 dbSNP
rs1482547827 1185 dbSNP
rs1249792582 1186 dbSNP
rs1213580587 1187 dbSNP
rs1258354761 1203 dbSNP
rs572301487 1205 dbSNP
rs749304239 1213 dbSNP
rs1426032665 1221 dbSNP
rs1325156948 1224 dbSNP
rs981884448 1226 dbSNP
rs775832980 1231 dbSNP
rs748640603 1240 dbSNP
rs1296067099 1245 dbSNP
rs373633522 1246 dbSNP
rs1469146723 1253 dbSNP
rs746686934 1261 dbSNP
rs762890511 1264 dbSNP
rs770636661 1264 dbSNP
rs776083802 1266 dbSNP
rs1177694856 1274 dbSNP
rs1433102776 1282 dbSNP
rs745692547 1287 dbSNP
rs769466892 1294 dbSNP
rs775636541 1297 dbSNP
rs762952906 1298 dbSNP
rs767756444 1303 dbSNP
rs773449291 1325 dbSNP
rs1323639617 1334 dbSNP
rs760628823 1337 dbSNP
rs1382689079 1339 dbSNP
rs138728682 1345 dbSNP
rs776803200 1349 dbSNP
rs41292649 1350 dbSNP
rs1232106703 1351 dbSNP
rs1467554987 1352 dbSNP
rs576437058 1357 dbSNP
rs1304680673 1358 dbSNP
rs374301271 1360 dbSNP
rs888771861 1362 dbSNP
rs1304247045 1377 dbSNP
rs1432277002 1378 dbSNP
rs181790319 1382 dbSNP
rs1374358368 1386 dbSNP
rs1159760563 1403 dbSNP
rs1442147442 1420 dbSNP
rs1032073784 1422 dbSNP
rs1181451778 1422 dbSNP
rs879166612 1422 dbSNP
rs1258473284 1436 dbSNP
rs1209035803 1452 dbSNP
rs770383092 1454 dbSNP
rs892308521 1460 dbSNP
rs559742794 1461 dbSNP
rs1299723464 1471 dbSNP
rs1362180209 1479 dbSNP
rs1352837231 1485 dbSNP
rs565119415 1486 dbSNP
rs1237992739 1494 dbSNP
rs201497887 1500 dbSNP
rs532357389 1501 dbSNP
rs1310766658 1509 dbSNP
rs1294708620 1511 dbSNP
rs1412592964 1512 dbSNP
rs970673839 1517 dbSNP
rs12087512 1520 dbSNP
rs540725134 1531 dbSNP
rs1298347754 1532 dbSNP
rs1401940361 1536 dbSNP
rs1383362860 1540 dbSNP
rs559422181 1551 dbSNP
rs1458698365 1556 dbSNP
rs529623890 1563 dbSNP
rs540397123 1573 dbSNP
rs980696814 1574 dbSNP
rs1475039061 1575 dbSNP
rs1263998406 1580 dbSNP
rs1195857824 1582 dbSNP
rs1445368130 1584 dbSNP
rs1282013058 1585 dbSNP
rs1204523628 1588 dbSNP
rs1034792992 1600 dbSNP
rs1274878854 1602 dbSNP
rs1237145649 1604 dbSNP
rs548204283 1611 dbSNP
rs1278455260 1615 dbSNP
rs567843039 1617 dbSNP
rs1432229950 1624 dbSNP
rs116654768 1625 dbSNP
rs1324205962 1635 dbSNP
rs1353148655 1657 dbSNP
rs761590537 1658 dbSNP
rs1397129767 1659 dbSNP
rs1163314298 1667 dbSNP
rs1461256138 1669 dbSNP
rs909265965 1675 dbSNP
rs940769704 1679 dbSNP
rs1474448107 1682 dbSNP
rs972242691 1686 dbSNP
rs56309605 1690 dbSNP
rs923421117 1698 dbSNP
rs549951871 1701 dbSNP
rs76996025 1705 dbSNP
rs538850334 1710 dbSNP
rs149502482 1712 dbSNP
rs555356413 1713 dbSNP
rs892255984 1721 dbSNP
rs566176919 1722 dbSNP
rs1174252581 1739 dbSNP
rs1379614941 1743 dbSNP
rs1009318081 1745 dbSNP
rs144173217 1753 dbSNP
rs906353847 1754 dbSNP
rs148685814 1765 dbSNP
rs1002544478 1777 dbSNP
rs763444714 1781 dbSNP
rs576397216 1792 dbSNP
rs1467845293 1796 dbSNP
rs1238614416 1799 dbSNP
rs749983478 1802 dbSNP
rs1435790691 1816 dbSNP
rs962124096 1822 dbSNP
rs972108229 1824 dbSNP
rs1349453603 1829 dbSNP
rs1301837422 1835 dbSNP
rs923452146 1842 dbSNP
rs1365942353 1843 dbSNP
rs774726667 1846 dbSNP
rs986793769 1848 dbSNP
rs543701907 1850 dbSNP
rs1238548377 1863 dbSNP
rs1335127290 1867 dbSNP
rs1436617950 1876 dbSNP
rs1286470947 1890 dbSNP
rs1373752728 1898 dbSNP
rs1171660612 1901 dbSNP
rs370459546 1902 dbSNP
rs1408437557 1905 dbSNP
rs936913360 1914 dbSNP
rs1053489925 1917 dbSNP
rs1221131837 1918 dbSNP
rs1473554979 1920 dbSNP
rs892118751 1922 dbSNP
rs535547850 1928 dbSNP
rs945137515 1929 dbSNP
rs1263892554 1934 dbSNP
rs1046150947 1936 dbSNP
rs1277643911 1936 dbSNP
rs906360972 1940 dbSNP
rs1354962551 1949 dbSNP
rs1002008774 1966 dbSNP
rs1237540826 1970 dbSNP
rs572140766 1975 dbSNP
rs1437769636 1976 dbSNP
rs888407835 1978 dbSNP
rs1353628997 1985 dbSNP
rs1312423897 2001 dbSNP
rs759894521 2006 dbSNP
rs145384271 2009 dbSNP
rs1404182006 2030 dbSNP
rs1407038436 2033 dbSNP
rs1188201788 2045 dbSNP
rs541236941 2049 dbSNP
rs1162329702 2051 dbSNP
rs1476019349 2070 dbSNP
rs1254961291 2072 dbSNP
rs1186530291 2086 dbSNP
rs1485921616 2094 dbSNP
rs559168019 2096 dbSNP
rs1214326820 2097 dbSNP
rs1316676637 2098 dbSNP
rs528561841 2098 dbSNP
rs1332865611 2105 dbSNP
rs548221387 2118 dbSNP
rs1327021345 2119 dbSNP
rs1400643726 2122 dbSNP
rs1364214327 2123 dbSNP
rs1030379412 2131 dbSNP
rs1344380415 2132 dbSNP
rs1445222508 2134 dbSNP
rs1281726342 2138 dbSNP
rs1374222625 2139 dbSNP
rs1163797284 2145 dbSNP
rs147244152 2154 dbSNP
rs541458579 2163 dbSNP
rs1421086124 2169 dbSNP
rs986351814 2173 dbSNP
rs1254182870 2181 dbSNP
rs1215886019 2195 dbSNP
rs1467436148 2203 dbSNP
rs1310902490 2206 dbSNP
rs1272739697 2210 dbSNP
rs1228484648 2212 dbSNP
rs1309317097 2213 dbSNP
rs1293601562 2214 dbSNP
rs910709436 2215 dbSNP
rs760645113 2217 dbSNP
rs1361112227 2220 dbSNP
rs1337192649 2221 dbSNP
rs1326521845 2224 dbSNP
rs1214496638 2227 dbSNP
rs958339553 2237 dbSNP
rs989719036 2244 dbSNP
rs913583836 2250 dbSNP
rs186265175 2251 dbSNP
rs1374288621 2254 dbSNP
rs1167622226 2255 dbSNP
rs1046187067 2260 dbSNP
rs542511741 2262 dbSNP
rs140662650 2264 dbSNP
rs1452932341 2265 dbSNP
rs1233371349 2266 dbSNP
rs879014663 2272 dbSNP
rs1196594826 2273 dbSNP
rs550014692 2274 dbSNP
rs190334008 2275 dbSNP
rs1291122973 2281 dbSNP
rs937755230 2284 dbSNP
rs1304025581 2286 dbSNP
rs571626693 2287 dbSNP
rs1419329585 2289 dbSNP
rs1054989453 2290 dbSNP
rs888262981 2292 dbSNP
rs1398116625 2293 dbSNP
rs764111996 2293 dbSNP
rs753733113 2295 dbSNP
rs1375570173 2297 dbSNP
rs568102216 2302 dbSNP
rs1433473143 2308 dbSNP
rs1169436726 2309 dbSNP
rs1400048658 2314 dbSNP
rs1005436860 2320 dbSNP
rs1248638189 2320 dbSNP
rs1331545684 2322 dbSNP
rs532560538 2323 dbSNP
rs373969389 2325 dbSNP
rs1486027508 2332 dbSNP
rs1447449425 2334 dbSNP
rs1282519127 2338 dbSNP
rs1212930018 2344 dbSNP
rs757060713 2349 dbSNP
rs1239441156 2353 dbSNP
rs993427792 2362 dbSNP
rs1030742039 2366 dbSNP
rs1234131409 2368 dbSNP
rs954857322 2372 dbSNP
rs1277737350 2374 dbSNP
rs1315896302 2378 dbSNP
rs1216103422 2402 dbSNP
rs1432337876 2404 dbSNP
rs1273677298 2414 dbSNP
rs1008039837 2417 dbSNP
rs1455641280 2418 dbSNP
rs1017801699 2421 dbSNP
rs1441793144 2424 dbSNP
rs958164071 2425 dbSNP
rs1004293786 2427 dbSNP
rs778740721 2428 dbSNP
rs182861874 2429 dbSNP
rs566015917 2436 dbSNP
rs1185825869 2438 dbSNP
rs989749699 2445 dbSNP
rs914122015 2454 dbSNP
rs1259013233 2457 dbSNP
rs1352551350 2460 dbSNP
rs1258807865 2464 dbSNP
rs966943151 2469 dbSNP
rs1335007173 2474 dbSNP
rs981839540 2477 dbSNP
rs1192564226 2484 dbSNP
rs750218936 2489 dbSNP
rs1339405777 2492 dbSNP
rs927600642 2492 dbSNP
rs1319528337 2496 dbSNP
rs1421021175 2505 dbSNP
rs868741338 2506 dbSNP
rs1383254538 2507 dbSNP
rs1320231627 2511 dbSNP
rs1462308235 2526 dbSNP
rs1420232868 2534 dbSNP
rs1163092418 2536 dbSNP
rs1474656675 2542 dbSNP
rs1474905485 2554 dbSNP
rs1373771178 2564 dbSNP
rs1193800059 2565 dbSNP
rs1448736546 2566 dbSNP
rs1169989612 2575 dbSNP
rs937802442 2596 dbSNP
rs1055253433 2601 dbSNP
rs909732606 2614 dbSNP
rs1274627186 2615 dbSNP
rs1015313914 2621 dbSNP
rs536795821 2631 dbSNP
rs753355575 2635 dbSNP
rs1355019236 2636 dbSNP
rs370967954 2638 dbSNP
rs1311520176 2639 dbSNP
rs1297543639 2642 dbSNP
rs548404681 2651 dbSNP
rs754734876 2652 dbSNP
rs1377365484 2673 dbSNP
rs1415460243 2687 dbSNP
rs758114813 2690 dbSNP
rs1405054579 2710 dbSNP
rs570021139 2712 dbSNP
rs1474478429 2713 dbSNP
rs897115244 2723 dbSNP
rs1432694574 2729 dbSNP
rs1454531983 2742 dbSNP
rs1270583843 2751 dbSNP
rs1343948508 2753 dbSNP
rs1211431438 2773 dbSNP
rs1217422195 2780 dbSNP
rs187162704 2781 dbSNP
rs1273287616 2791 dbSNP
rs1196982288 2793 dbSNP
rs1336918280 2797 dbSNP
rs1297473168 2801 dbSNP
rs1282368335 2805 dbSNP
rs1348064467 2815 dbSNP
rs558857358 2829 dbSNP
rs1051797801 2831 dbSNP
rs555361558 2843 dbSNP
rs1436218926 2847 dbSNP
rs237429 2847 dbSNP
rs746553023 2848 dbSNP
rs1448388788 2850 dbSNP
rs191093923 2853 dbSNP
rs1018082011 2856 dbSNP
rs893981725 2863 dbSNP
rs1243057559 2864 dbSNP
rs1167866745 2870 dbSNP
rs1477870473 2874 dbSNP
rs183404823 2877 dbSNP
rs1011113697 2879 dbSNP
rs114771147 2880 dbSNP
rs1189184565 2883 dbSNP
rs778431285 2888 dbSNP
rs1233060803 2891 dbSNP
rs1183589875 2893 dbSNP
rs1435547721 2896 dbSNP
rs1158102130 2902 dbSNP
rs982757573 2905 dbSNP
rs550863716 2925 dbSNP
rs868770398 2939 dbSNP
rs1278836007 2940 dbSNP
rs1382830463 2943 dbSNP
rs1351895754 2955 dbSNP
rs541867781 2958 dbSNP
rs1349943916 2961 dbSNP
rs1440365177 2961 dbSNP
rs1313488147 2962 dbSNP
rs1379976906 2964 dbSNP
rs563047270 2967 dbSNP
rs1416715336 2974 dbSNP
rs959273506 2979 dbSNP
rs990584995 2990 dbSNP
rs1384139678 2992 dbSNP
rs571096193 3000 dbSNP
rs909604446 3004 dbSNP
rs574864402 3012 dbSNP
rs545407761 3013 dbSNP
rs1438440477 3015 dbSNP
rs368381843 3017 dbSNP
rs918402754 3020 dbSNP
rs539661202 3021 dbSNP
rs532865858 3034 dbSNP
rs1283292778 3047 dbSNP
rs1210089317 3048 dbSNP
rs1352128001 3060 dbSNP
rs1205365549 3063 dbSNP
rs547668952 3082 dbSNP
rs890479885 3104 dbSNP
rs559859263 3111 dbSNP
rs1192108491 3133 dbSNP
rs1039026522 3135 dbSNP
rs1235172319 3139 dbSNP
rs893934204 3140 dbSNP
rs1353687451 3153 dbSNP
rs1300989646 3168 dbSNP
rs1455102670 3168 dbSNP
rs1178495261 3170 dbSNP
rs1010976469 3172 dbSNP
rs1021162207 3179 dbSNP
rs1410712623 3190 dbSNP
rs1362150551 3192 dbSNP
rs370480012 3192 dbSNP
rs1455400853 3204 dbSNP
rs1475888269 3210 dbSNP
rs771490772 3216 dbSNP
rs1181785675 3221 dbSNP
rs530236097 3225 dbSNP
rs1486440634 3227 dbSNP
rs1244348683 3232 dbSNP
rs1390252011 3236 dbSNP
rs1003815721 3237 dbSNP
rs115646540 3240 dbSNP
rs959075991 3240 dbSNP
rs1327699853 3244 dbSNP
rs1332754808 3244 dbSNP
rs1312189500 3245 dbSNP
rs1215249241 3249 dbSNP
rs990927843 3251 dbSNP
rs1362506309 3256 dbSNP
rs774922716 3258 dbSNP
rs1432593401 3260 dbSNP
rs548676910 3276 dbSNP
rs1394891395 3277 dbSNP
rs1347759695 3283 dbSNP
rs1445956423 3287 dbSNP
rs1428618111 3288 dbSNP
rs972445701 3297 dbSNP
rs553515372 3303 dbSNP
rs1304705847 3305 dbSNP
rs1337074281 3313 dbSNP
rs1239129603 3315 dbSNP
rs1283275563 3317 dbSNP
rs918433629 3323 dbSNP
rs1215126076 3332 dbSNP
rs986738711 3340 dbSNP
rs752851380 3342 dbSNP
rs911096865 3359 dbSNP
rs1309296016 3361 dbSNP
rs1276721227 3363 dbSNP
rs942630340 3383 dbSNP
rs1364202533 3385 dbSNP
rs1039076970 3386 dbSNP
rs1469141927 3388 dbSNP
rs570182222 3394 dbSNP
rs1198638391 3397 dbSNP
rs1249030767 3409 dbSNP
rs1292549593 3410 dbSNP
rs1365111618 3410 dbSNP
rs1462078357 3419 dbSNP
rs3595 3420 dbSNP
rs1355723512 3427 dbSNP
rs915231841 3430 dbSNP
rs946795787 3432 dbSNP
rs1042471481 3438 dbSNP
rs902684718 3439 dbSNP
rs1431778292 3440 dbSNP
rs1004083280 3449 dbSNP
rs1182594401 3458 dbSNP
rs1177953391 3462 dbSNP
rs1056624681 3463 dbSNP
rs1367920640 3464 dbSNP
rs1474369813 3469 dbSNP
rs1167278190 3470 dbSNP
rs1235196736 3479 dbSNP
rs1418319538 3481 dbSNP
rs1391549634 3483 dbSNP
rs1464894340 3489 dbSNP
rs1200366933 3500 dbSNP
rs151265701 3503 dbSNP
rs552631783 3504 dbSNP
rs1376643790 3518 dbSNP
rs1176038969 3520 dbSNP
rs1016585519 3525 dbSNP
rs1377371561 3527 dbSNP
rs902532023 3536 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HEK293S
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in GSM1084064. RNA binding protein: AGO2. Condition:CLIP_noemetine_AbnovaAb HITS-CLIP data was present in GSM1084065. RNA binding protein: AGO2. Condition:CLIP_emetine_AbnovaAb HITS-CLIP data was present in GSM1084078. RNA binding protein: AGO2. Condition:CLIP_nohippuristanol_rep2_AbnovaAb HITS-CLIP data was present in GSM1084079. RNA binding protein: AGO2. Condition:CLIP_hippuristanol_rep2_AbnovaAb ...

- Karginov FV; Hannon GJ, 2013, Genes & development.

Article - Karginov FV; Hannon GJ
- Genes & development, 2013
When adapting to environmental stress, cells attenuate and reprogram their translational output. In part, these altered translation profiles are established through changes in the interactions between RNA-binding proteins and mRNAs. The Argonaute 2 (Ago2)/microRNA (miRNA) machinery has been shown to participate in stress-induced translational up-regulation of a particular mRNA, CAT-1; however, a detailed, transcriptome-wide understanding of the involvement of Ago2 in the process has been lacking. Here, we profiled the overall changes in Ago2-mRNA interactions upon arsenite stress by cross-linking immunoprecipitation (CLIP) followed by high-throughput sequencing (CLIP-seq). Ago2 displayed a significant remodeling of its transcript occupancy, with the majority of 3' untranslated region (UTR) and coding sequence (CDS) sites exhibiting stronger interaction. Interestingly, target sites that were destined for release from Ago2 upon stress were depleted in miRNA complementarity signatures, suggesting an alternative mode of interaction. To compare the changes in Ago2-binding patterns across transcripts with changes in their translational states, we measured mRNA profiles on ribosome/polysome gradients by RNA sequencing (RNA-seq). Increased Ago2 occupancy correlated with stronger repression of translation for those mRNAs, as evidenced by a shift toward lighter gradient fractions upon stress, while release of Ago2 was associated with the limited number of transcripts that remained translated. Taken together, these data point to a role for Ago2 and the mammalian miRNAs in mediating the translational component of the stress response.
LinkOut: [PMID: 23824327]
CLIP-seq Support 1 for dataset GSM1084064
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_noemetine_AbnovaAb
Location of target site ENST00000370253.2 | 3UTR | AAAAGAUUGGGGAAUU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM1084065
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_emetine_AbnovaAb
Location of target site ENST00000370253.2 | 3UTR | AAAAGAUUGGGGAAUU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
CLIP-seq Support 3 for dataset GSM1084078
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_nohippuristanol_rep2_AbnovaAb
Location of target site ENST00000370253.2 | 3UTR | AAAAGAUUGGGGAAUU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
CLIP-seq Support 4 for dataset GSM1084079
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_hippuristanol_rep2_AbnovaAb
Location of target site ENST00000370253.2 | 3UTR | AAAAGAUUGGGGAAUU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
KICH -0.538 0 -0.393 0.03 25 Click to see details
CHOL -0.547 0.06 -0.450 0.11 9 Click to see details
HNSC -0.23 0.07 -0.100 0.26 42 Click to see details
LUAD 0.443 0.07 0.280 0.19 12 Click to see details
BLCA 0.328 0.09 0.259 0.15 18 Click to see details
LUSC -0.174 0.15 -0.171 0.15 38 Click to see details
BRCA -0.09 0.21 -0.068 0.27 84 Click to see details
PRAD -0.114 0.22 -0.140 0.17 50 Click to see details
PAAD -0.54 0.23 -0.400 0.3 4 Click to see details
STAD 0.122 0.25 -0.005 0.49 32 Click to see details
CESC -0.664 0.27 -0.500 0.33 3 Click to see details
UCEC 0.118 0.32 0.154 0.26 19 Click to see details
LIHC 0.068 0.32 0.085 0.28 49 Click to see details
THCA -0.03 0.41 -0.003 0.49 59 Click to see details
KIRC 0.022 0.43 -0.007 0.48 68 Click to see details
ESCA 0.054 0.44 0.055 0.44 11 Click to see details
KIRP -0.025 0.45 -0.095 0.3 32 Click to see details
PCPG 0.076 0.48 0.500 0.33 3 Click to see details
PCPG 0.076 0.48 0.500 0.33 3 Click to see details
164 hsa-miR-2355-5p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT190653 PABPN1 poly(A) binding protein nuclear 1 2 2
MIRT286477 TAOK1 TAO kinase 1 2 4
MIRT318993 GIGYF1 GRB10 interacting GYF protein 1 2 2
MIRT345622 DCAF7 DDB1 and CUL4 associated factor 7 2 4
MIRT442513 SYT7 synaptotagmin 7 2 4
MIRT444247 CTNND1 catenin delta 1 2 2
MIRT444780 ECE1 endothelin converting enzyme 1 2 2
MIRT456525 TMEM63A transmembrane protein 63A 2 2
MIRT468960 RPRD2 regulation of nuclear pre-mRNA domain containing 2 2 2
MIRT469834 R3HDM4 R3H domain containing 4 2 2
MIRT470027 PTP4A1 protein tyrosine phosphatase type IVA, member 1 2 2
MIRT471167 PHB2 prohibitin 2 2 2
MIRT475819 HDGF heparin binding growth factor 2 4
MIRT479389 CDKN1B cyclin dependent kinase inhibitor 1B 2 6
MIRT481747 APH1A aph-1 homolog A, gamma-secretase subunit 2 2
MIRT485220 PRICKLE1 prickle planar cell polarity protein 1 2 2
MIRT487259 CCNF cyclin F 2 2
MIRT489971 MCC mutated in colorectal cancers 2 4
MIRT491399 C1D C1D nuclear receptor corepressor 2 2
MIRT494959 CCDC144A coiled-coil domain containing 144A 2 4
MIRT494979 PPP5D1 PPP5 tetratricopeptide repeat domain containing 1 2 2
MIRT495225 CHST14 carbohydrate sulfotransferase 14 2 2
MIRT496550 TBX15 T-box 15 2 2
MIRT501612 PISD phosphatidylserine decarboxylase 2 2
MIRT509393 TRIM24 tripartite motif containing 24 2 2
MIRT519616 ZNF788 zinc finger family member 788 2 4
MIRT519738 ZNF394 zinc finger protein 394 2 4
MIRT521230 SAR1A secretion associated Ras related GTPase 1A 2 4
MIRT521801 POM121C POM121 transmembrane nucleoporin C 2 2
MIRT526233 C2orf15 chromosome 2 open reading frame 15 2 2
MIRT526932 CMSS1 cms1 ribosomal small subunit homolog (yeast) 2 2
MIRT529189 ACBD7 acyl-CoA binding domain containing 7 2 2
MIRT529329 ZNF649 zinc finger protein 649 2 2
MIRT529698 MRPL30 mitochondrial ribosomal protein L30 2 2
MIRT529921 TOP1MT DNA topoisomerase I mitochondrial 2 2
MIRT530032 SMC1A structural maintenance of chromosomes 1A 2 2
MIRT530898 C9orf3 chromosome 9 open reading frame 3 2 2
MIRT531621 TM4SF5 transmembrane 4 L six family member 5 2 4
MIRT533132 XIAP X-linked inhibitor of apoptosis 2 2
MIRT533210 WAPAL WAPL cohesin release factor 2 2
MIRT534058 ST6GALNAC3 ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 3 2 2
MIRT535487 PARVB parvin beta 2 2
MIRT536749 HOXD9 homeobox D9 2 2
MIRT551456 CARKD NAD(P)HX dehydratase 2 2
MIRT551858 ASB6 ankyrin repeat and SOCS box containing 6 2 2
MIRT552095 FAM8A1 family with sequence similarity 8 member A1 2 2
MIRT552332 ZNF704 zinc finger protein 704 2 2
MIRT552549 ZFP36L2 ZFP36 ring finger protein like 2 2 2
MIRT561505 SRSF2 serine and arginine rich splicing factor 2 2 2
MIRT562702 ZNF415 zinc finger protein 415 2 2
MIRT563052 ZNF138 zinc finger protein 138 2 2
MIRT564592 ZNF791 zinc finger protein 791 2 2
MIRT566422 PIGA phosphatidylinositol glycan anchor biosynthesis class A 2 2
MIRT570176 RCBTB1 RCC1 and BTB domain containing protein 1 2 2
MIRT570866 ZNF525 zinc finger protein 525 2 2
MIRT570875 ZFP1 ZFP1 zinc finger protein 2 2
MIRT571517 ZNF625 zinc finger protein 625 2 2
MIRT572551 DKK3 dickkopf WNT signaling pathway inhibitor 3 2 2
MIRT610894 HINFP histone H4 transcription factor 2 2
MIRT611037 PTGES prostaglandin E synthase 2 2
MIRT611479 HSPA4 heat shock protein family A (Hsp70) member 4 2 4
MIRT612419 SP1 Sp1 transcription factor 2 2
MIRT614478 FRMPD3 FERM and PDZ domain containing 3 2 2
MIRT616318 CACNA1A calcium voltage-gated channel subunit alpha1 A 2 2
MIRT616929 ZNF638 zinc finger protein 638 2 2
MIRT618131 GABARAPL3 GABA type A receptor associated protein like 3 pseudogene 2 2
MIRT618452 ZFP30 ZFP30 zinc finger protein 2 4
MIRT620671 BBS5 Bardet-Biedl syndrome 5 2 2
MIRT620713 ASB16 ankyrin repeat and SOCS box containing 16 2 2
MIRT621126 EMC7 ER membrane protein complex subunit 7 2 4
MIRT621443 TOMM22 translocase of outer mitochondrial membrane 22 2 2
MIRT623491 KCTD11 potassium channel tetramerization domain containing 11 2 2
MIRT623783 GOSR1 golgi SNAP receptor complex member 1 2 2
MIRT623918 FNBP1L formin binding protein 1 like 2 2
MIRT625723 CXorf38 chromosome X open reading frame 38 2 2
MIRT625778 GCNT1 glucosaminyl (N-acetyl) transferase 1, core 2 2 2
MIRT626940 TTR transthyretin 2 2
MIRT627357 TSC22D2 TSC22 domain family member 2 2 2
MIRT632078 ALDH1A2 aldehyde dehydrogenase 1 family member A2 2 2
MIRT633361 FAM71F2 family with sequence similarity 71 member F2 2 2
MIRT639793 MVK mevalonate kinase 2 2
MIRT643761 NAGK N-acetylglucosamine kinase 2 2
MIRT644358 NDUFAF6 NADH:ubiquinone oxidoreductase complex assembly factor 6 2 2
MIRT645558 ZMYM1 zinc finger MYM-type containing 1 2 2
MIRT646588 ANKRD36 ankyrin repeat domain 36 2 2
MIRT646631 SLC25A46 solute carrier family 25 member 46 2 2
MIRT648066 HSPA6 heat shock protein family A (Hsp70) member 6 2 2
MIRT648142 SUCLG2 succinate-CoA ligase GDP-forming beta subunit 2 2
MIRT648416 MYOZ3 myozenin 3 2 2
MIRT649218 AMMECR1L AMMECR1 like 2 2
MIRT649772 MRPS27 mitochondrial ribosomal protein S27 2 4
MIRT650510 UFM1 ubiquitin fold modifier 1 2 2
MIRT651007 ZNF740 zinc finger protein 740 2 2
MIRT651524 WNT2B Wnt family member 2B 2 2
MIRT652014 TTYH3 tweety family member 3 2 2
MIRT652513 TMEM109 transmembrane protein 109 2 2
MIRT652686 THUMPD3 THUMP domain containing 3 2 2
MIRT652772 TENM3 teneurin transmembrane protein 3 2 2
MIRT653160 SPRY4 sprouty RTK signaling antagonist 4 2 2
MIRT653765 SIX5 SIX homeobox 5 2 2
MIRT653792 SIRPA signal regulatory protein alpha 2 2
MIRT655649 OAZ2 ornithine decarboxylase antizyme 2 2 2
MIRT656263 MEX3A mex-3 RNA binding family member A 2 2
MIRT657044 KCNH6 potassium voltage-gated channel subfamily H member 6 2 2
MIRT657375 HMGA1 high mobility group AT-hook 1 2 2
MIRT657532 GTDC1 glycosyltransferase like domain containing 1 2 2
MIRT657542 GSTO2 glutathione S-transferase omega 2 2 2
MIRT657828 GJD3 gap junction protein delta 3 2 2
MIRT658946 DOK6 docking protein 6 2 2
MIRT660363 BACH2 BTB domain and CNC homolog 2 2 2
MIRT660406 ATXN7L3 ataxin 7 like 3 2 2
MIRT660948 ABL2 ABL proto-oncogene 2, non-receptor tyrosine kinase 2 2
MIRT661031 AAK1 AP2 associated kinase 1 2 2
MIRT662435 RALGAPA1 Ral GTPase activating protein catalytic alpha subunit 1 2 2
MIRT668419 FAM217B family with sequence similarity 217 member B 2 2
MIRT669332 BSND barttin CLCNK type accessory beta subunit 2 2
MIRT676105 CLUAP1 clusterin associated protein 1 2 2
MIRT677084 SMIM15 small integral membrane protein 15 2 2
MIRT677127 OGFOD3 2-oxoglutarate and iron dependent oxygenase domain containing 3 2 2
MIRT678001 CPM carboxypeptidase M 2 2
MIRT678531 TMEM78 transmembrane protein 78 2 2
MIRT680000 ZNF860 zinc finger protein 860 2 2
MIRT680098 PXMP4 peroxisomal membrane protein 4 2 2
MIRT686795 SOX12 SRY-box 12 2 2
MIRT698887 SPTBN2 spectrin beta, non-erythrocytic 2 2 2
MIRT699371 SLC30A6 solute carrier family 30 member 6 2 2
MIRT702005 MIDN midnolin 2 2
MIRT708101 IGF2BP1 insulin like growth factor 2 mRNA binding protein 1 2 2
MIRT709563 GYG2 glycogenin 2 2 2
MIRT710559 PPP2R5E protein phosphatase 2 regulatory subunit B'epsilon 2 2
MIRT710585 CDCA4 cell division cycle associated 4 2 2
MIRT710873 NT5DC1 5'-nucleotidase domain containing 1 2 2
MIRT711876 VASP vasodilator stimulated phosphoprotein 2 2
MIRT712226 RIMS3 regulating synaptic membrane exocytosis 3 2 2
MIRT713211 FAM13A family with sequence similarity 13 member A 2 2
MIRT713261 GPR55 G protein-coupled receptor 55 2 2
MIRT713327 DNAJC28 DnaJ heat shock protein family (Hsp40) member C28 2 2
MIRT713889 RNF19B ring finger protein 19B 2 2
MIRT714015 UBAP2L ubiquitin associated protein 2 like 2 2
MIRT714202 NLRP12 NLR family pyrin domain containing 12 2 2
MIRT714717 VPS8 VPS8, CORVET complex subunit 2 2
MIRT714748 ZNF385D zinc finger protein 385D 2 2
MIRT714806 ARHGEF19 Rho guanine nucleotide exchange factor 19 2 2
MIRT714852 ADAMTS17 ADAM metallopeptidase with thrombospondin type 1 motif 17 2 2
MIRT715717 MRPL4 mitochondrial ribosomal protein L4 2 2
MIRT715852 GRIN2A glutamate ionotropic receptor NMDA type subunit 2A 2 2
MIRT716853 MFSD12 major facilitator superfamily domain containing 12 2 2
MIRT717134 EBPL emopamil binding protein like 2 2
MIRT717248 TMEM246 transmembrane protein 246 2 2
MIRT717997 ZNF79 zinc finger protein 79 2 2
MIRT718341 PURA purine rich element binding protein A 2 2
MIRT719587 TFCP2L1 transcription factor CP2 like 1 2 2
MIRT720520 PTGR2 prostaglandin reductase 2 2 2
MIRT720671 SLC39A13 solute carrier family 39 member 13 2 2
MIRT721213 DCLK3 doublecortin like kinase 3 2 2
MIRT721757 INF2 inverted formin, FH2 and WH2 domain containing 2 2
MIRT721826 POU6F1 POU class 6 homeobox 1 2 2
MIRT722091 SUSD1 sushi domain containing 1 2 2
MIRT722275 LURAP1 leucine rich adaptor protein 1 2 2
MIRT722802 ARHGAP19 Rho GTPase activating protein 19 2 2
MIRT722866 FAM212B family with sequence similarity 212 member B 2 2
MIRT723113 ZSCAN16 zinc finger and SCAN domain containing 16 2 2
MIRT724378 NEK8 NIMA related kinase 8 2 2
MIRT732775 PYCR1 pyrroline-5-carboxylate reductase 1 3 0
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-2355 Ceritinib 57379345 NSC776422 approved resistant cell line (H3122)
hsa-miR-2355-5p Gemcitabine 60750 NSC613327 approved sensitive High Pancreatic Cancer cell line (PANC-1)
hsa-miR-2355-5p Fluorouracil 3385 NSC19893 approved sensitive High Pancreatic Cancer cell line (PANC-1)
hsa-miR-2355-5p Imatinib 5291 NSC743414 approved resistant High Chronic Myelogenous Leukemia cell line (K562)
hsa-miR-2355-5p Cisplatin 5460033 NSC119875 approved resistant High Non-Small Cell Lung Cancer cell line (A549, HCC827)
hsa-miR-2355-5p Gefitinib 123631 NSC715055 approved resistant High Non-Small Cell Lung Cancer cell line (A549, HCC827)
hsa-miR-2355-5p Temozolomide 5394 NSC362856 approved resistant High Glioma tissue
hsa-miR-2355-5p Osimertinib 71496458 NSC779217 approved sensitive cell line (HCC827)
hsa-miR-2355-5p Vemurafenib 42611257 NSC761431 approved resistant cell line (451Lu)
hsa-miR-2355-5p Cisplatin 5460033 NSC119875 approved resistant cell line (A549)
hsa-miR-2355-5p Gefitinib 123631 NSC715055 approved resistant cell line (HCC827)
hsa-miR-2355-5p Tamoxifen+Fulvestrant sensitive cell line (LCC9)
hsa-miR-2355-5p Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-2355-5p Ceritinib 57379345 NSC776422 approved resistant cell line (H3122)
hsa-miR-2355-5p Cisplatin 5460033 NSC119875 approved sensitive cell line (TOV-112D)
hsa-miR-2355-5p Cisplatin 5460033 NSC119875 approved sensitive cell line (OVSAHO)

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