miRTarBase - #MIRT624063


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pre-miRNA Information
pre-miRNA hsa-mir-4540   
Genomic Coordinates chr9: 36864254 - 36864308
Description Homo sapiens miR-4540 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-4540
Sequence 35| UUAGUCCUGCCUGUAGGUUUA |55
Evidence Experimental
Experiments Illumina
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs937122950 4 dbSNP
rs143699849 7 dbSNP
Putative Targets

Gene Information
Gene Symbol EID1   
Synonyms C15orf3, CRI1, EID-1, IRO45620, PNAS-22, PTD014, RBP21
Description EP300 interacting inhibitor of differentiation 1
Transcript NM_014335   
Expression
Putative miRNA Targets on EID1
3'UTR of EID1
(miRNA target sites are highlighted)		 
>EID1|NM_014335|3'UTR
   1 TTAGATGCTGTTAAAAGAGGAGGAAACTACTTGAGGAGGGACCCAACTTTCCGCTATCTTTTGGGTTCATTCCAAATAGT
  81 TTTGTGCCATTGAAAAACTTGACCTTCAAAAAAATTTGTTTTTCAGAATAGAACACAATAGGACAGTGACTGCACAGTTG
 161 TGAAAAAGGAAGAGAATCATTAAAGAAAAAGAAAAAAGATTTTAAGACCGTTGAAATCAATTATCAAGAACGTCCTAAAA
 241 CACCTATGGCTTTGACTTTGTTATTGATCCAGATTATTTTCCTTGCATTGGGGAAAATATCTTTCATATTTGTTTGCTGT
 321 AAAGATGGTTTTGCAAGAATAAGTCATGACCAAGACAAACTGCCAATACAAAAGCCCACTGATACTAATTATATAATGAG
 401 AAAAAAATGTATCCAACTAGGACACATATCTTTTGAGTTATTTGGACTGAAAGCTTAAGAAAACTTGGAAAATTCTATTT
 481 TGTGATCTAGTCAAGCCACAGTTATCAAAGGCTACATTTTCAGTGTAAGATAAATGGATGAGTAAACTCAAATATGTATC
 561 ACGTGTGCTTTGTATCTTAAGATGTGTTTCCAAGAGCATCTGAAATTTTGTTTGTACATGTATCTTGATCATTTATAAAG
 641 CCACTGTGATCTATAAATCAAGAAAATCCATTGTCATAACCATTTTTAAAAGTCAAAAATTAAGACATCCTTAATTAAAA
 721 AGTTTCAAATCTAGACACTAAATGTGTGTGAATGTACAAAGAAAACAAACCATTGCTTATGCTGTTATATACTAGAGAAA
 801 TTTTGTTTTGCTTGCTGTTTTAACTTGACAGATGAAGGACTTTAGTTGAACTTCATATTGTAAGAACTGTTAATAAAAGT
 881 TGTCAAGTAAAAAGCGCTATATCTAAAAAGACTTTATGAACAGTTATTCTATCAACTTTTAAAGGTTTTAAACCTGCCCA
 961 GAAATTACCTTGGTATCTGAAGTTTCCCTCTGTCTCCTCCTCTAATTAAGCTTGTTATTTGTCATGCACCAGCATTGGAG
1041 ATAATAAAATTTCTTGTTCTGTGTATTTTGTTTGGCTAATAGTATTGCATACATACTTTCTCTGTATACTACTTTCTATT
1121 GTATGTGTTAACCAGTATTAAGGGAAAATGATCCAGCTTCAGCTATCTAATTCACAAATTAATTTCTGGAAATTAAACTT
1201 TGTAAATTAAGTTTTTGCCTATAAGAATTTGCTGGTCTGGGAAAACCTGCCCTATCAATGAGTATGTTGCCGTGGTTACC
1281 TTACTAAGATGCTGAAGTTCTAGGAGAGTAATGATTACATCAGAAGGCTAGGTTCAGCAAAATAAGTGTATCAGCAGGTT
1361 TTATCATGATCAGTAAAAATGTTCCAAATGCTTCTGCTCCATTATAGCAGTAAAGAACGAATATCCAATGCAACAGGACA
1441 ATTAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' auUUGGA-UGUC--CGUCCUGAuu 5'
            |||:| ||||  | ||||||  
Target 5' ttAACTTGACAGATGAAGGACTtt 3'
 820 - 843 145.00 -14.30
2 
miRNA  3' auUUGG--AUGUCCGUCCUGAUu 5'
            | ||  |:||  |||||| | 
Target 5' atATCCAATGCA-ACAGGACAAt 3'
 1421 - 1442 120.00 -10.12
3 
miRNA  3' auUUG-GAUGUCC-GUC-CUGAUu 5'
            ||| | |:||| ||| ||||: 
Target 5' agAACACAATAGGACAGTGACTGc 3'
 130 - 153 119.00 -15.10
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN30150506 6 COSMIC
COSN1081444 26 COSMIC
COSN1177495 52 COSMIC
COSN30128301 53 COSMIC
COSN6641925 57 COSMIC
COSN1081442 59 COSMIC
COSN24294733 60 COSMIC
COSN26958004 61 COSMIC
COSN26958005 62 COSMIC
COSN30116892 115 COSMIC
COSN30120821 149 COSMIC
COSN30140244 158 COSMIC
COSN8174223 268 COSMIC
COSN26958006 302 COSMIC
COSN31528575 302 COSMIC
COSN31514113 401 COSMIC
COSN26603844 835 COSMIC
COSN31520292 839 COSMIC
COSN216787 889 COSMIC
COSN30530386 1008 COSMIC
COSN19542982 1014 COSMIC
COSN31516098 1049 COSMIC
COSN19656564 1054 COSMIC
COSN30530742 1127 COSMIC
COSN14988249 1181 COSMIC
COSN6274746 1264 COSMIC
COSN31584932 1312 COSMIC
COSN26680653 1322 COSMIC
COSN31513783 1370 COSMIC
COSN28653719 1381 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs945380637 3 dbSNP
rs1368155196 9 dbSNP
rs1457827962 13 dbSNP
rs1425630415 14 dbSNP
rs1043996957 16 dbSNP
rs1194140837 20 dbSNP
rs778372925 21 dbSNP
rs745541224 25 dbSNP
rs1303460460 29 dbSNP
rs1334254416 32 dbSNP
rs771725603 34 dbSNP
rs1189273834 35 dbSNP
rs780015230 39 dbSNP
rs16961791 41 dbSNP
rs768753967 43 dbSNP
rs773420485 45 dbSNP
rs555505511 47 dbSNP
rs771051717 50 dbSNP
rs893767396 53 dbSNP
rs376798804 54 dbSNP
rs143754791 57 dbSNP
rs1364683845 72 dbSNP
rs1295484875 76 dbSNP
rs1007966946 79 dbSNP
rs1449093721 79 dbSNP
rs1335366716 80 dbSNP
rs1441954081 80 dbSNP
rs1171317278 85 dbSNP
rs1402385661 90 dbSNP
rs575341291 93 dbSNP
rs1460856899 102 dbSNP
rs1015785555 104 dbSNP
rs543571184 120 dbSNP
rs903043284 123 dbSNP
rs998707024 126 dbSNP
rs961026791 127 dbSNP
rs1183361519 146 dbSNP
rs1472947993 149 dbSNP
rs995168656 153 dbSNP
rs1458672361 158 dbSNP
rs1239325890 170 dbSNP
rs1213683980 175 dbSNP
rs1333307221 180 dbSNP
rs1026826115 182 dbSNP
rs1292517867 182 dbSNP
rs1049803 186 dbSNP
rs1030142831 188 dbSNP
rs954453853 197 dbSNP
rs1449091518 199 dbSNP
rs1007272595 201 dbSNP
rs1325288447 204 dbSNP