pre-miRNA Information
pre-miRNA hsa-mir-605   
Genomic Coordinates chr10: 51299573 - 51299655
Synonyms MIRN605, hsa-mir-605, MIR605
Description Homo sapiens miR-605 stem-loop
Comment None
RNA Secondary Structure
Associated Diseases

Mature miRNA Information
Mature miRNA hsa-miR-605-3p
Sequence 51| AGAAGGCACUAUGAGAUUUAGA |72
Evidence Experimental
Experiments Illumina
Editing Events in miRNAs
Modification Type Position on miR Chromosome DNA Strand Genomic Position (hg38) List of PMIDs Variant details
A-to-I 4 10 + 51299626 27587585, 28550310, 26028588, 26449202, 26487287, 29165639 MiREDiBase
A-to-I 14 10 + 51299636 29233923 MiREDiBase
A-to-I 20 10 + 51299642 18684997, 26449202, 27587585, 29233923 MiREDiBase
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs759219082 5 dbSNP
rs1491224174 9 dbSNP
rs746611214 10 dbSNP
rs367648737 11 dbSNP
rs1359467239 14 dbSNP
rs1442565019 16 dbSNP
Putative Targets

Gene Information
Gene Symbol COL12A1   
Synonyms BA209D8.1, BTHLM2, COL12A1L, DJ234P15.1, UCMD2
Description collagen type XII alpha 1 chain
Transcript NM_004370   
Other Transcripts NM_080645   
Expression
Putative miRNA Targets on COL12A1
3'UTR of COL12A1
(miRNA target sites are highlighted)
>COL12A1|NM_004370|3'UTR
   1 CACATTTTCTAAGTCGCCAGTGCTGCTTACAGTTTGAATACATGAAAATCCTGTTTCTGAGATGTTTGCGCACGTGCTTA
  81 TTAGGAAATGAGTCTGTATGGAAATCTCACCACAGATAATGGTTAACGAACCGGGTCGACATCACAAAGGAGGGTGGAGA
 161 CTCTTTTTACTAACTTGAATGAGACAAAAGCAGTGGTGTCAGTTTATAATCCTGATGCATTTCAGTAATAATGTAGAAAA
 241 ACATTATTTTAAAAAAGTTCCAACACACAGCCATGAGGAGCCTCAGTTTTGAAAGAGGTGCATAATAAAACTACTAACCA
 321 GAGGAGTCTATGCCATTTTAAGAAAAACAATTAACCTGGTTAAAGAGAAATGTCTTATGTAAATAATAAACTAATTGTGG
 401 CTTGTAAATGATTTGTATGTGATCCTGTCGACTAAAATCACTTAACAATTCTACAATAAGCTTCTGCATCAAAGCCTGCC
 481 GCTTGCTCTATGCCGGAATAACACCAAATGGAATCTCCTCATCTCTTGCTTGTTAGCGATGTGTCTGATTCAGGGCATCT
 561 GTCTTTTTGTTACTTTTTTGTCCGTGTCCTCTCATTTGGGTTTTGTAACTGCAATTTTCAAACCAAAGTTTAAAATCACC
 641 TTTTCTTCCTGTTTTGCTGTAGTCACTGGTGTTCCTCACCCACCAGCTGTAACTCAGTTTGTGTGAGGTACAGCCACAGA
 721 AGATGTCATGTACTGTATATTACCTGGTGATAGTTGCTTTTCACCCCCCGAGTTCAGTTTCTAGGAGCCAATGAAACTTC
 801 CCCTCACCTCCTCATCTTTCCAAGTTGTTCTTTGAATTGAGGAGTTTGAAGGCATAAACAGTTACTTGGGGATTTGCGAA
 881 AATCCTACTTAGTTACTGCGTTTACAGTTCTTTGGCCCAGTCTCTGACCCTTCCCAAGTATTTGTGCAATGATTGTGTTT
 961 ACTGCTGGATTTTTGAAGGTTTTTTTTTTTAAGAAAGTGCCATTTCATTATTTGATTATCACCAAATTATCTGGAAATAA
1041 TTGGGACATTGTAACTTATCTATTTATAGTTATGAGATTAAGACTGGAGTGCCATCACCGCGGGTGATGATTTAGCTTTT
1121 GCTGTGTGTGTGTGTGTGTGCCTTCCAAATCATGCCATAATTGTAATGTTGAATCGGACAGAGCCTTACGTGCCCGAGGG
1201 CGGGGCCTACCTGCCTGAGCGCGAGCCCTTCATCGTGCCGGTGGAGCCCGAGCGGACAGCGGAATACGAGGACTACGGCG
1281 CAGACGAGCCTGCAGAGGAGCCTCCTGAGCCCCACCGGCGCTGGCGGCGCGCCCTGCCCCACGGACCCGGGCAGTGAACC
1361 AGAGATCACGCGCCGCGCCGCGAGGCTTGGGGGAGGTGTTGAAATTCTCATTTACAGGTCAGATAGAGCAGTGTACGTCT
1441 TTTCTGAGGTGTTTCTTCCAGCGTTGCTCATCCAGGAGTACCCTTTCTGATTGTAGAGAACCTTGTTTCTGCAGGAAGCC
1521 TAGCTCCAAGCACGCAGTCTGTAGACATTTTTGCCTTTGCCCTTGAAATGCTTGCAAAATACTTTGTTAACAAAAGCTGC
1601 AAAGAGAGAACATGCCGTGTGCCTTTAGTTAGCACAGCGGGCAGCCTCAGTGAAACTCTTAGGTTAAGCAGTTAAGTCCT
1681 GGAACCCAGAGCTGCTGTGTATTTCGAGCGGGCAGTTTATCTTTTGCTATACTTATTTTCAATTCAATTACACCACGATT
1761 CAAATAATTCCCCTCCTAAAACCAAAAAGGAGGGAAACGTCAACTCCATTGCAATTACTTATCTTCCTCTTCTATCTCTG
1841 TTATACGCCGGGGCATAGAATGCTCGTATACATCTCTTTAACAACCACAAACCTTAAGCCATGTAGATGAAGTTAGTGCA
1921 TCAACGGGATACAGTTCCATATTGCCTTAAACCTCCTTGTTTTAGACACACTAACATTTATACCAAATTGCAGATTATTC
2001 TGCAGAGAGGGAATTGCATGTTTGTGTTGTATATTTAGTATGAACTTTTTTCAGAATATAATATTTCTTAGTTATCAAAA
2081 GTAGTTGGAAAACATTTGCAAGACTATGAACATAGAATTGCTGCTTTTATATTTTAACTGCAGATTGTGAATTTCACTGC
2161 CTTATATTATTTATTTCTGAAACAAAAGAGGCATTTTTCAATAAAACTACTGAAAATTTGA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' agAU-UUAGAGUAUCACGGAAga 5'
            || |:|: |||| ||||||  
Target 5' gaTACAGTTCCATATTGCCTTaa 3'
1928 - 1950 148.00 -10.60
2
miRNA  3' agAUUUAGA-GUAU-CACGGAAGa 5'
            |: :| | ::|: |||||||| 
Target 5' tgTGTGTGTGTGTGTGTGCCTTCc 3'
1123 - 1146 148.00 -11.20
3
miRNA  3' agAUUUAGAGUAUCACGGAAga 5'
            |:|||:||  | ||||||  
Target 5' tgTGAATTTC--ACTGCCTTat 3'
2146 - 2165 144.00 -12.60
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
1204035 16 ClinVar
COSN30586178 2 COSMIC
COSN30519792 12 COSMIC
COSN26971318 25 COSMIC
COSN31575550 44 COSMIC
COSN32052791 57 COSMIC
COSN7795203 68 COSMIC
COSN1336898 70 COSMIC
COSN19659209 76 COSMIC
COSN31497602 80 COSMIC
COSN30507376 81 COSMIC
COSN6332151 85 COSMIC
COSN30157664 90 COSMIC
COSN30491220 101 COSMIC
COSN30462975 111 COSMIC
COSN31496104 127 COSMIC
COSN26640020 131 COSMIC
COSN31605190 138 COSMIC
COSN30170445 143 COSMIC
COSN30111039 156 COSMIC
COSN30111602 185 COSMIC
COSN30539185 200 COSMIC
COSN30137365 236 COSMIC
COSN9807049 363 COSMIC
COSN19342948 384 COSMIC
COSN15836070 467 COSMIC
COSN31591749 538 COSMIC
COSN9807048 614 COSMIC
COSN1336897 764 COSMIC
COSN31514444 809 COSMIC
COSN31530701 855 COSMIC
COSN24301650 942 COSMIC
COSN19655688 963 COSMIC
COSN19657427 980 COSMIC
COSN32065189 1006 COSMIC
COSN31556652 1017 COSMIC
COSN9913152 1029 COSMIC
COSN29461661 1033 COSMIC
COSN31537136 1067 COSMIC
COSN31479901 1096 COSMIC
COSN6514552 1121 COSMIC
COSN20103016 1122 COSMIC
COSN6514551 1122 COSMIC
COSN28890006 1176 COSMIC
COSN30515782 1191 COSMIC
COSN15623713 1196 COSMIC
COSN14240186 1202 COSMIC
COSN18719101 1221 COSMIC
COSN30528835 1235 COSMIC
COSN8514743 1244 COSMIC
COSN30736491 1253 COSMIC
COSN31965199 1315 COSMIC
COSN15260988 1318 COSMIC
COSN30534290 1322 COSMIC
COSN26481899 1359 COSMIC
COSN23136669 1365 COSMIC
COSN31659427 1390 COSMIC
COSN31959998 1436 COSMIC
COSN2505766 1452 COSMIC
COSN31962647 1617 COSMIC
COSN216962 1707 COSMIC
COSN30160448 1832 COSMIC
COSN31582889 1866 COSMIC
COSN31487137 1925 COSMIC
COSN31547074 2058 COSMIC
COSN31536918 2063 COSMIC
COSN29334097 2166 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs775424873 2 dbSNP
rs199859483 3 dbSNP
rs1311326743 4 dbSNP
rs1030801360 8 dbSNP
rs114679644 16 dbSNP
rs966413869 20 dbSNP
rs748415252 23 dbSNP
rs1348345423 24 dbSNP
rs781495545 25 dbSNP
rs755138892 29 dbSNP
rs368744457 30 dbSNP
rs1446861729 32 dbSNP
rs1378543419 35 dbSNP
rs751642987 38 dbSNP
rs1029442820 41 dbSNP
rs868832188 42 dbSNP
rs1465235219 49 dbSNP
rs1358886508 51 dbSNP
rs996165753 52 dbSNP
rs902120325 53 dbSNP
rs374581732 70 dbSNP
rs1233666621 73 dbSNP
rs372127487 74 dbSNP
rs1319476966 80 dbSNP
rs1472136627 85 dbSNP
rs1251332347 89 dbSNP
rs368391100 94 dbSNP
rs886613316 96 dbSNP
rs1260223272 106 dbSNP
rs1055343495 127 dbSNP
rs1181571933 128 dbSNP
rs1002878591 132 dbSNP
rs552614800 133 dbSNP
rs1249208387 134 dbSNP
rs1354209497 138 dbSNP
rs527942663 138 dbSNP
rs931092677 143 dbSNP
rs898234144 154 dbSNP
rs1046600068 156 dbSNP
rs1224363882 159 dbSNP
rs1415324735 162 dbSNP
rs1283338460 170 dbSNP
rs1490448231 175 dbSNP
rs762463454 185 dbSNP
rs1376726353 208 dbSNP
rs80299357 210 dbSNP
rs908617647 212 dbSNP
rs865884385 220 dbSNP
rs1341102409 236 dbSNP
rs148531119 243 dbSNP
rs115003022 244 dbSNP
rs992046511 248 dbSNP
rs745395961 251 dbSNP
rs1260501499 252 dbSNP
rs975472045 255 dbSNP
rs1306420799 261 dbSNP
rs1407059630 264 dbSNP
rs373709443 268 dbSNP
rs943276809 271 dbSNP
rs911836323 277 dbSNP
rs780738804 280 dbSNP
rs1323364491 291 dbSNP
rs1414919810 297 dbSNP
rs562629318 301 dbSNP
rs987251181 303 dbSNP
rs923810938 304 dbSNP
rs1020636745 317 dbSNP
rs1363937458 319 dbSNP
rs989193149 321 dbSNP
rs1387804566 323 dbSNP
rs543632466 325 dbSNP
rs193137416 331 dbSNP
rs1347942909 337 dbSNP
rs1218170709 343 dbSNP
rs760913036 355 dbSNP
rs1319310697 356 dbSNP
rs1216875861 364 dbSNP
rs144572206 367 dbSNP
rs1463684625 376 dbSNP
rs746990719 378 dbSNP
rs968567600 381 dbSNP
rs564273388 393 dbSNP
rs868583547 395 dbSNP
rs200904138 404 dbSNP
rs913701689 406 dbSNP
rs1052279870 415 dbSNP
rs1004358282 427 dbSNP
rs887293785 428 dbSNP
rs1402390284 429 dbSNP
rs1048472448 430 dbSNP
rs931378171 432 dbSNP
rs1432695801 434 dbSNP
rs899952257 435 dbSNP
rs974800897 440 dbSNP
rs1331393670 445 dbSNP
rs966045914 446 dbSNP
rs1480581941 448 dbSNP
rs1040090331 456 dbSNP
rs944080216 460 dbSNP
rs1018922439 461 dbSNP
rs911781239 478 dbSNP
rs987367606 480 dbSNP
rs1215989311 481 dbSNP
rs1005138515 485 dbSNP
rs1311035679 486 dbSNP
rs913745981 488 dbSNP
rs188974309 493 dbSNP
rs989309191 494 dbSNP
rs1471092507 495 dbSNP
rs1448618867 505 dbSNP
rs1182784368 507 dbSNP
rs1411202038 522 dbSNP
rs886689585 524 dbSNP
rs1455438671 528 dbSNP
rs1284872606 530 dbSNP
rs958026023 538 dbSNP
rs1328562038 557 dbSNP
rs1320964677 563 dbSNP
rs1355799840 564 dbSNP
rs1409959832 573 dbSNP
rs1288239436 574 dbSNP
rs1286606769 580 dbSNP
rs1225553288 582 dbSNP
rs1294306901 584 dbSNP
rs1355826826 591 dbSNP
rs1208319873 598 dbSNP
rs1275440204 599 dbSNP
rs1438434959 609 dbSNP
rs1430240714 625 dbSNP
rs1250968546 628 dbSNP
rs1033461076 640 dbSNP
rs1189718152 646 dbSNP
rs777410628 655 dbSNP
rs1368859590 666 dbSNP
rs1028270052 671 dbSNP
rs1472234834 681 dbSNP
rs980834606 684 dbSNP
rs1274580710 686 dbSNP
rs758239491 688 dbSNP
rs1306939590 697 dbSNP
rs1369187399 698 dbSNP
rs1434802879 713 dbSNP
rs906004712 717 dbSNP
rs576304785 722 dbSNP
rs1025209371 733 dbSNP
rs1243119025 736 dbSNP
rs1272138805 737 dbSNP
rs572323084 744 dbSNP
rs183062305 751 dbSNP
rs947774568 763 dbSNP
rs752826594 764 dbSNP
rs1272574966 767 dbSNP
rs1482007274 768 dbSNP
rs1212959121 770 dbSNP
rs1256843832 776 dbSNP
rs1441604498 784 dbSNP
rs887389718 787 dbSNP
rs560250 791 dbSNP
rs1449714020 792 dbSNP
rs1457239074 797 dbSNP
rs1167344843 798 dbSNP
rs190473023 800 dbSNP
rs1387818305 801 dbSNP
rs1437073665 803 dbSNP
rs555962024 812 dbSNP
rs1402201512 834 dbSNP
rs923868172 841 dbSNP
rs899901225 845 dbSNP
rs1039802070 847 dbSNP
rs187240035 862 dbSNP
rs979698408 864 dbSNP
rs1434683300 868 dbSNP
rs946588605 871 dbSNP
rs1350112843 872 dbSNP
rs921732831 876 dbSNP
rs974831739 877 dbSNP
rs966077025 887 dbSNP
rs1256515320 892 dbSNP
rs13192795 893 dbSNP
rs1344298722 899 dbSNP
rs1198457907 906 dbSNP
rs944013605 910 dbSNP
rs1018994068 916 dbSNP
rs1187564257 918 dbSNP
rs1245856763 921 dbSNP
rs149291183 922 dbSNP
rs1176227282 923 dbSNP
rs951061911 925 dbSNP
rs1377501979 941 dbSNP
rs891128162 944 dbSNP
rs1160614942 945 dbSNP
rs1027926367 946 dbSNP
rs1266296344 952 dbSNP
rs945287809 953 dbSNP
rs913860800 954 dbSNP
rs1373555191 979 dbSNP
rs1054010922 980 dbSNP
rs1205673494 980 dbSNP
rs182537848 982 dbSNP
rs370196347 991 dbSNP
rs533772339 991 dbSNP
rs555578746 991 dbSNP
rs67840454 991 dbSNP
rs906040954 1002 dbSNP
rs1278194780 1007 dbSNP
rs926337759 1018 dbSNP
rs1489264654 1028 dbSNP
rs1023051479 1041 dbSNP
rs980567737 1043 dbSNP
rs1364516364 1045 dbSNP
rs970345006 1049 dbSNP
rs1011990948 1060 dbSNP
rs1184567547 1068 dbSNP
rs1413391538 1068 dbSNP
rs917579936 1081 dbSNP
rs896233291 1087 dbSNP
rs1056086993 1088 dbSNP
rs1157482228 1091 dbSNP
rs982481828 1103 dbSNP
rs1458609864 1111 dbSNP
rs202087198 1121 dbSNP
rs999182339 1122 dbSNP
rs59844830 1123 dbSNP
rs1491064231 1124 dbSNP
rs374366592 1125 dbSNP
rs1393267178 1127 dbSNP
rs71703730 1133 dbSNP
rs1177273565 1134 dbSNP
rs1416614481 1136 dbSNP
rs112607771 1141 dbSNP
rs1227492447 1141 dbSNP
rs1286229982 1141 dbSNP
rs1351092840 1141 dbSNP
rs781702377 1141 dbSNP
rs766545409 1146 dbSNP
rs1378970849 1148 dbSNP
rs1366981934 1150 dbSNP
rs1463578207 1153 dbSNP
rs534222628 1157 dbSNP
rs1178618955 1158 dbSNP
rs902153656 1161 dbSNP
rs758984489 1175 dbSNP
rs1181917190 1176 dbSNP
rs1483061606 1184 dbSNP
rs1237799707 1185 dbSNP
rs1211938215 1190 dbSNP
rs996049914 1195 dbSNP
rs946590822 1196 dbSNP
rs921764930 1198 dbSNP
rs1162139511 1201 dbSNP
rs530455359 1205 dbSNP
rs796683738 1206 dbSNP
rs755306378 1207 dbSNP
rs1312291636 1208 dbSNP
rs753960031 1209 dbSNP
rs1482993132 1210 dbSNP
rs1203667071 1215 dbSNP
rs1379480569 1218 dbSNP
rs1304268672 1220 dbSNP
rs964262021 1222 dbSNP
rs1359102778 1224 dbSNP
rs1158500654 1226 dbSNP
rs1420854035 1234 dbSNP
rs1382198401 1235 dbSNP
rs1483766098 1237 dbSNP
rs944805199 1238 dbSNP
rs911963465 1239 dbSNP
rs1423365307 1240 dbSNP
rs1414775665 1244 dbSNP
rs1183880955 1246 dbSNP
rs1484766041 1247 dbSNP
rs1169254918 1248 dbSNP
rs763111390 1250 dbSNP
rs891244317 1252 dbSNP
rs1217171149 1253 dbSNP
rs1166603216 1255 dbSNP
rs1489241641 1257 dbSNP
rs1288905737 1260 dbSNP
rs1041698987 1261 dbSNP
rs1302066728 1264 dbSNP
rs1010217728 1266 dbSNP
rs892372834 1268 dbSNP
rs1053724677 1269 dbSNP
rs936480417 1271 dbSNP
rs138961174 1276 dbSNP
rs926482411 1277 dbSNP
rs1045333821 1285 dbSNP
rs983879758 1286 dbSNP
rs1338830507 1288 dbSNP
rs1297997755 1289 dbSNP
rs548214942 1291 dbSNP
rs1401104470 1293 dbSNP
rs750893629 1295 dbSNP
rs1247682770 1298 dbSNP
rs949111771 1300 dbSNP
rs1457462851 1303 dbSNP
rs1369199764 1305 dbSNP
rs1167095122 1307 dbSNP
rs950763015 1311 dbSNP
rs1422589496 1314 dbSNP
rs1194153063 1316 dbSNP
rs920560154 1317 dbSNP
rs973685597 1318 dbSNP
rs765695255 1320 dbSNP
rs1209226251 1321 dbSNP
rs1414978778 1326 dbSNP
rs1488483951 1327 dbSNP
rs1266713238 1330 dbSNP
rs762028336 1331 dbSNP
rs766604557 1332 dbSNP
rs1278492116 1334 dbSNP
rs1219613598 1336 dbSNP
rs1342844227 1337 dbSNP
rs776273759 1341 dbSNP
rs1386706605 1342 dbSNP
rs1391463653 1343 dbSNP
rs1295381804 1346 dbSNP
rs763684816 1347 dbSNP
rs1464226114 1348 dbSNP
rs558062482 1349 dbSNP
rs760296025 1350 dbSNP
rs1304582843 1352 dbSNP
rs1466981016 1353 dbSNP
rs1267724805 1360 dbSNP
rs775017260 1361 dbSNP
rs960468607 1367 dbSNP
rs1198010061 1369 dbSNP
rs1433723205 1370 dbSNP
rs1034794124 1371 dbSNP
rs1176198763 1372 dbSNP
rs1456967194 1378 dbSNP
rs1443629848 1379 dbSNP
rs111709344 1380 dbSNP
rs1396154285 1381 dbSNP
rs1323514347 1382 dbSNP
rs1258285558 1383 dbSNP
rs1200209425 1384 dbSNP
rs1320362206 1387 dbSNP
rs771561737 1389 dbSNP
rs191317998 1391 dbSNP
rs1332212894 1392 dbSNP
rs758448092 1394 dbSNP
rs1444630223 1395 dbSNP
rs1376329835 1401 dbSNP
rs1159706446 1407 dbSNP
rs750960703 1411 dbSNP
rs1387368840 1427 dbSNP
rs1398624426 1432 dbSNP
rs1307141739 1435 dbSNP
rs920147858 1436 dbSNP
rs1435176034 1439 dbSNP
rs1273572808 1445 dbSNP
rs1352923963 1449 dbSNP
rs999652797 1449 dbSNP
rs1229328886 1462 dbSNP
rs767733074 1467 dbSNP
rs974354548 1470 dbSNP
rs1386955880 1471 dbSNP
rs1290926135 1478 dbSNP
rs1451078372 1483 dbSNP
rs1219556778 1491 dbSNP
rs569207958 1501 dbSNP
rs902184550 1511 dbSNP
rs550813799 1513 dbSNP
rs964525594 1515 dbSNP
rs1423212633 1516 dbSNP
rs1468453272 1518 dbSNP
rs1164605337 1520 dbSNP
rs1414152468 1522 dbSNP
rs532598589 1522 dbSNP
rs1404225871 1523 dbSNP
rs1300758647 1524 dbSNP
rs1372879755 1527 dbSNP
rs1043747458 1528 dbSNP
rs1010861411 1536 dbSNP
rs1307761356 1541 dbSNP
rs1180212960 1547 dbSNP
rs73462055 1554 dbSNP
rs1284999452 1560 dbSNP
rs1008390030 1568 dbSNP
rs1226621275 1581 dbSNP
rs1276898881 1582 dbSNP
rs1252817783 1585 dbSNP
rs1204812120 1592 dbSNP
rs774948758 1604 dbSNP
rs1251040262 1606 dbSNP
rs944502598 1612 dbSNP
rs911701401 1613 dbSNP
rs1435858197 1617 dbSNP
rs1189426177 1627 dbSNP
rs369506240 1628 dbSNP
rs1047817899 1632 dbSNP
rs1222912716 1639 dbSNP
rs1010165447 1658 dbSNP
rs545975430 1670 dbSNP
rs929345342 1673 dbSNP
rs539997254 1680 dbSNP
rs769423197 1682 dbSNP
rs1395051261 1686 dbSNP
rs973804166 1694 dbSNP
rs970313122 1695 dbSNP
rs905145028 1697 dbSNP
rs916146515 1698 dbSNP
rs993017932 1706 dbSNP
rs960209454 1709 dbSNP
rs1300158764 1710 dbSNP
rs1032221497 1713 dbSNP
rs999285288 1718 dbSNP
rs966858598 1721 dbSNP
rs1227845754 1722 dbSNP
rs1250674028 1732 dbSNP
rs1287342157 1740 dbSNP
rs759253384 1743 dbSNP
rs1407678561 1747 dbSNP
rs776090791 1753 dbSNP
rs1293943576 1755 dbSNP
rs1046864986 1757 dbSNP
rs1181350567 1772 dbSNP
rs1249555721 1773 dbSNP
rs1449540858 1785 dbSNP
rs1187450105 1799 dbSNP
rs1371789336 1806 dbSNP
rs1468034892 1808 dbSNP
rs1348079130 1817 dbSNP
rs1010560886 1818 dbSNP
rs1322801430 1828 dbSNP
rs146081905 1829 dbSNP
rs1412866249 1831 dbSNP
rs1293527799 1833 dbSNP
rs560461628 1836 dbSNP
rs1235359441 1837 dbSNP
rs1275418513 1846 dbSNP
rs541874506 1847 dbSNP
rs911487684 1848 dbSNP
rs1269613620 1849 dbSNP
rs770480130 1850 dbSNP
rs1465078641 1851 dbSNP
rs1207478608 1853 dbSNP
rs746875171 1855 dbSNP
rs1259081647 1864 dbSNP
rs143440512 1865 dbSNP
rs556089354 1873 dbSNP
rs1048020837 1874 dbSNP
rs1377622997 1874 dbSNP
rs746689624 1878 dbSNP
rs929441291 1883 dbSNP
rs1329224967 1896 dbSNP
rs1020304353 1897 dbSNP
rs771719561 1902 dbSNP
rs1456941078 1903 dbSNP
rs1287144641 1907 dbSNP
rs111962947 1908 dbSNP
rs948741906 1918 dbSNP
rs186021610 1920 dbSNP
rs1033009482 1923 dbSNP
rs1221402188 1924 dbSNP
rs1001963558 1928 dbSNP
rs993047491 1939 dbSNP
rs1226162326 1941 dbSNP
rs1347028924 1947 dbSNP
rs1237849445 1958 dbSNP
rs1258625982 1964 dbSNP
rs747957329 1967 dbSNP
rs905094468 1970 dbSNP
rs1209975160 1976 dbSNP
rs1023986172 1981 dbSNP
rs1386010471 1982 dbSNP
rs1490003120 1984 dbSNP
rs1184731556 2004 dbSNP
rs1013400275 2016 dbSNP
rs58540334 2026 dbSNP
rs1457766847 2027 dbSNP
rs558929323 2031 dbSNP
rs977983898 2034 dbSNP
rs966512568 2038 dbSNP
rs1379622173 2040 dbSNP
rs1022443942 2042 dbSNP
rs1309828597 2052 dbSNP
rs1432985479 2052 dbSNP
rs1390671475 2056 dbSNP
rs1304396153 2058 dbSNP
rs989203816 2061 dbSNP
rs1188800330 2064 dbSNP
rs1290437850 2065 dbSNP
rs1465779603 2075 dbSNP
rs964383935 2076 dbSNP
rs1357858150 2081 dbSNP
rs929703718 2098 dbSNP
rs1253222268 2105 dbSNP
rs1480510576 2110 dbSNP
rs898279231 2120 dbSNP
rs1258460080 2126 dbSNP
rs1364660243 2141 dbSNP
rs1017242889 2144 dbSNP
rs778895378 2148 dbSNP
rs890363859 2157 dbSNP
rs1256240341 2159 dbSNP
rs534114820 2165 dbSNP
rs554201004 2166 dbSNP
rs535907169 2171 dbSNP
rs993719166 2174 dbSNP
rs911450455 2175 dbSNP
rs1296241577 2187 dbSNP
rs898976224 2189 dbSNP
rs1297505401 2191 dbSNP
rs1396270504 2194 dbSNP
rs1037764323 2196 dbSNP
rs1364403088 2207 dbSNP
rs368277184 2214 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HEK293S
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in GSM1084044. RNA binding protein: AGO2. Condition:CLIP_noarsenite_rep3 HITS-CLIP data was present in GSM1084064. RNA binding protein: AGO2. Condition:CLIP_noemetine_AbnovaAb HITS-CLIP data was present in GSM1084065. RNA binding protein: AGO2. Condition:CLIP_emetine_AbnovaAb HITS-CLIP data was present in GSM1084068. RNA binding protein: AGO2. Condition:CLIP_noemetine_SigmaAb HITS-CLIP data was present in GSM1084069. RNA binding protein: AGO2. Condition:CLIP_emetine_SigmaAb HITS-CLIP data was present in GSM1084076. RNA binding protein: AGO2. Condition:CLIP_nohippuristanol_rep1_SigmaAb HITS-CLIP data was present in GSM1084077. RNA binding protein: AGO2. Condition:CLIP_hippuristanol_rep1_SigmaAb HITS-CLIP data was present in GSM1084078. RNA binding protein: AGO2. Condition:CLIP_nohippuristanol_rep2_AbnovaAb HITS-CLIP data was present in GSM1084079. RNA binding protein: AGO2. Condition:CLIP_hippuristanol_rep2_AbnovaAb ...

- Karginov FV; Hannon GJ, 2013, Genes & development.

Article - Karginov FV; Hannon GJ
- Genes & development, 2013
When adapting to environmental stress, cells attenuate and reprogram their translational output. In part, these altered translation profiles are established through changes in the interactions between RNA-binding proteins and mRNAs. The Argonaute 2 (Ago2)/microRNA (miRNA) machinery has been shown to participate in stress-induced translational up-regulation of a particular mRNA, CAT-1; however, a detailed, transcriptome-wide understanding of the involvement of Ago2 in the process has been lacking. Here, we profiled the overall changes in Ago2-mRNA interactions upon arsenite stress by cross-linking immunoprecipitation (CLIP) followed by high-throughput sequencing (CLIP-seq). Ago2 displayed a significant remodeling of its transcript occupancy, with the majority of 3' untranslated region (UTR) and coding sequence (CDS) sites exhibiting stronger interaction. Interestingly, target sites that were destined for release from Ago2 upon stress were depleted in miRNA complementarity signatures, suggesting an alternative mode of interaction. To compare the changes in Ago2-binding patterns across transcripts with changes in their translational states, we measured mRNA profiles on ribosome/polysome gradients by RNA sequencing (RNA-seq). Increased Ago2 occupancy correlated with stronger repression of translation for those mRNAs, as evidenced by a shift toward lighter gradient fractions upon stress, while release of Ago2 was associated with the limited number of transcripts that remained translated. Taken together, these data point to a role for Ago2 and the mammalian miRNAs in mediating the translational component of the stress response.
LinkOut: [PMID: 23824327]
CLIP-seq Support 1 for dataset GSM1084044
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_noarsenite_rep3
Location of target site ENST00000322507.8 | 3UTR | UUGCUGUGUGUGUGUGUGUGU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM1084064
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_noemetine_AbnovaAb
Location of target site ENST00000322507.8 | 3UTR | UUGCUGUGUGUGUGUGUGUGUGCCU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
CLIP-seq Support 3 for dataset GSM1084065
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_emetine_AbnovaAb
Location of target site ENST00000322507.8 | 3UTR | UAGCUUUUGCUGUGUGUGUGUGUGUGUGC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
CLIP-seq Support 4 for dataset GSM1084068
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_noemetine_SigmaAb
Location of target site ENST00000322507.8 | 3UTR | UUGCUGUGUGUGUGUGUGUGU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
CLIP-seq Support 5 for dataset GSM1084069
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_emetine_SigmaAb
Location of target site ENST00000322507.8 | 3UTR | UUGCUGUGUGUGUGUGUGUGU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
CLIP-seq Support 6 for dataset GSM1084076
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_nohippuristanol_rep1_SigmaAb
Location of target site ENST00000322507.8 | 3UTR | UGCUGUGUGUGUGUGUGUGUGCCU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
CLIP-seq Support 7 for dataset GSM1084077
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_hippuristanol_rep1_SigmaAb
Location of target site ENST00000322507.8 | 3UTR | UGCUGUGUGUGUGUGUGUGUGC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
CLIP-seq Support 8 for dataset GSM1084078
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_nohippuristanol_rep2_AbnovaAb
Location of target site ENST00000322507.8 | 3UTR | UUGCUGUGUGUGUGUGUGUGU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
CLIP-seq Support 9 for dataset GSM1084079
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_hippuristanol_rep2_AbnovaAb
Location of target site ENST00000322507.8 | 3UTR | UUGCUGUGUGUGUGUGUGUGU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
100 hsa-miR-605-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT061339 WEE1 WEE1 G2 checkpoint kinase 2 4
MIRT061584 BTG2 BTG anti-proliferation factor 2 2 6
MIRT076140 WDR81 WD repeat domain 81 2 2
MIRT079361 CCDC137 coiled-coil domain containing 137 2 2
MIRT079547 VAMP3 vesicle associated membrane protein 3 2 2
MIRT096242 CANX calnexin 2 2
MIRT243877 G3BP1 G3BP stress granule assembly factor 1 2 4
MIRT249186 AKIRIN1 akirin 1 2 8
MIRT273604 SP1 Sp1 transcription factor 2 2
MIRT316766 FOXC1 forkhead box C1 2 4
MIRT322410 PPP2R2A protein phosphatase 2 regulatory subunit Balpha 2 2
MIRT370117 TRIB3 tribbles pseudokinase 3 2 2
MIRT392725 UBN2 ubinuclein 2 2 2
MIRT406910 PTBP1 polypyrimidine tract binding protein 1 2 2
MIRT407440 CTDSP1 CTD small phosphatase 1 2 2
MIRT441887 RD3 retinal degeneration 3 2 4
MIRT444979 C15orf52 chromosome 15 open reading frame 52 2 2
MIRT445241 FOXD4 forkhead box D4 2 2
MIRT445500 FOXD4L5 forkhead box D4 like 5 2 2
MIRT445503 FOXD4L4 forkhead box D4 like 4 2 2
MIRT447025 FOXD4L1 forkhead box D4 like 1 2 2
MIRT447743 TMCC3 transmembrane and coiled-coil domain family 3 2 2
MIRT448761 HDX highly divergent homeobox 2 2
MIRT450003 HAX1 HCLS1 associated protein X-1 2 2
MIRT452830 FAM131B family with sequence similarity 131 member B 2 2
MIRT452872 LAX1 lymphocyte transmembrane adaptor 1 2 2
MIRT453506 ARRB1 arrestin beta 1 2 2
MIRT454169 HIST1H2BK histone cluster 1 H2B family member k 2 2
MIRT458742 CES2 carboxylesterase 2 2 2
MIRT459166 HSPA6 heat shock protein family A (Hsp70) member 6 2 21
MIRT460246 IL17RB interleukin 17 receptor B 2 4
MIRT460514 SDE2 SDE2 telomere maintenance homolog 2 2
MIRT460698 RNF157 ring finger protein 157 2 2
MIRT461481 METTL1 methyltransferase like 1 2 2
MIRT462617 C20orf27 chromosome 20 open reading frame 27 2 4
MIRT463233 ZNF131 zinc finger protein 131 2 2
MIRT465699 TNPO2 transportin 2 2 8
MIRT466304 TIMM22 translocase of inner mitochondrial membrane 22 2 2
MIRT468957 RPS14 ribosomal protein S14 2 6
MIRT469571 RARA retinoic acid receptor alpha 2 2
MIRT469685 RAB5B RAB5B, member RAS oncogene family 2 2
MIRT470800 PMP22 peripheral myelin protein 22 2 2
MIRT471649 PANK2 pantothenate kinase 2 2 4
MIRT471722 OTUB1 OTU deubiquitinase, ubiquitin aldehyde binding 1 2 2
MIRT472281 NFIB nuclear factor I B 2 4
MIRT473680 MAPKBP1 mitogen-activated protein kinase binding protein 1 2 2
MIRT475859 H6PD hexose-6-phosphate dehydrogenase/glucose 1-dehydrogenase 2 2
MIRT477326 EPHA2 EPH receptor A2 2 2
MIRT477831 DYRK3 dual specificity tyrosine phosphorylation regulated kinase 3 2 2
MIRT478572 CTNND1 catenin delta 1 2 4
MIRT479634 CD81 CD81 molecule 2 2
MIRT481950 ANKRD11 ankyrin repeat domain 11 2 2
MIRT483696 ZNF74 zinc finger protein 74 2 6
MIRT488798 MALT1 MALT1 paracaspase 2 2
MIRT489066 STARD3 StAR related lipid transfer domain containing 3 2 2
MIRT492533 PSMD11 proteasome 26S subunit, non-ATPase 11 2 2
MIRT492857 NRARP NOTCH regulated ankyrin repeat protein 2 2
MIRT496793 BTRC beta-transducin repeat containing E3 ubiquitin protein ligase 2 2
MIRT500122 ZNF106 zinc finger protein 106 2 4
MIRT505359 TMEM167A transmembrane protein 167A 2 2
MIRT506786 KLHL15 kelch like family member 15 2 6
MIRT510692 SRM spermidine synthase 2 6
MIRT515841 CEP104 centrosomal protein 104 2 4
MIRT516448 ADAMTS4 ADAM metallopeptidase with thrombospondin type 1 motif 4 2 4
MIRT528855 PKP1 plakophilin 1 2 2
MIRT533848 TET3 tet methylcytosine dioxygenase 3 2 2
MIRT539025 ATXN7L1 ataxin 7 like 1 2 4
MIRT542872 NR6A1 nuclear receptor subfamily 6 group A member 1 2 2
MIRT546543 SATB2 SATB homeobox 2 2 2
MIRT554114 SMARCE1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1 2 2
MIRT560569 ZNF460 zinc finger protein 460 2 2
MIRT560796 EPM2AIP1 EPM2A interacting protein 1 2 2
MIRT562836 GCFC2 GC-rich sequence DNA-binding factor 2 2 2
MIRT563109 IFRD2 interferon related developmental regulator 2 2 2
MIRT564177 MRPL49 mitochondrial ribosomal protein L49 2 2
MIRT564283 ASB1 ankyrin repeat and SOCS box containing 1 2 2
MIRT564350 USP22 ubiquitin specific peptidase 22 2 2
MIRT565279 TNFRSF21 TNF receptor superfamily member 21 2 2
MIRT565338 TMEM104 transmembrane protein 104 2 2
MIRT565905 SCAMP2 secretory carrier membrane protein 2 2 2
MIRT567108 ITGB1 integrin subunit beta 1 2 2
MIRT567601 FANCF Fanconi anemia complementation group F 2 2
MIRT567779 DGAT2 diacylglycerol O-acyltransferase 2 2 2
MIRT568075 CENPQ centromere protein Q 2 2
MIRT624304 COL12A1 collagen type XII alpha 1 chain 2 2
MIRT644395 CDKL1 cyclin dependent kinase like 1 2 2
MIRT661547 ZNF674 zinc finger protein 674 2 4
MIRT670949 IRAK3 interleukin 1 receptor associated kinase 3 2 2
MIRT672951 AKAP5 A-kinase anchoring protein 5 2 2
MIRT697426 ZFP36 ZFP36 ring finger protein 2 2
MIRT700793 PIAS2 protein inhibitor of activated STAT 2 2 2
MIRT702657 ITGA3 integrin subunit alpha 3 2 2
MIRT708945 FZR1 fizzy and cell division cycle 20 related 1 2 2
MIRT713657 PLCE1 phospholipase C epsilon 1 2 2
MIRT719239 CYSLTR2 cysteinyl leukotriene receptor 2 2 2
MIRT719951 BLOC1S6 biogenesis of lysosomal organelles complex 1 subunit 6 2 2
MIRT722048 HLA-E major histocompatibility complex, class I, E 2 2
MIRT722201 URM1 ubiquitin related modifier 1 2 2
MIRT724790 C1D C1D nuclear receptor corepressor 2 2
MIRT734347 CYP2B6 cytochrome P450 family 2 subfamily B member 6 3 0
miRNA-Drug Associations
miRNA Small Melocule FDA CID Detection Method Condition PMID Year Expression Pattern of miRNA
miR-605 Anthranilamide-pyrazolo[1,5-a]pyrimidine NULL NULL Quantitative real-time PCR neuroblastoma cells 23992861 2013 up-regualted
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-605 Ceritinib 57379345 NSC776422 approved resistant High Non-Small Cell Lung Cancer cell line (H3122, H2228)
hsa-mir-605 Paclitaxel 36314 NSC125973 approved sensitive cell line (A2780)
hsa-mir-605 Cisplatin 5460033 NSC119875 approved sensitive cell line (A2780)
hsa-mir-605 Ceritinib 57379345 NSC776422 approved resistant cell line (H3122)
hsa-miR-605-3p Ceritinib 57379345 NSC776422 approved resistant High Non-Small Cell Lung Cancer cell line (H3122, H2228)

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