pre-miRNA Information
pre-miRNA hsa-mir-4282   
Genomic Coordinates chr6: 72967687 - 72967753
Description Homo sapiens miR-4282 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-4282
Sequence 40| UAAAAUUUGCAUCCAGGA |57
Evidence Experimental
Experiments SOLiD
DRVs in miRNA
Mutant ID Mutant Position Mutant Source
COSN32074657 13 COSMIC
COSN6331413 18 COSMIC
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1195771339 5 dbSNP
rs755058572 6 dbSNP
rs1245753664 11 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol CCDC171   
Synonyms C9orf93, bA536D16.1, bA778P13.1
Description coiled-coil domain containing 171
Transcript NM_173550   
Expression
Putative miRNA Targets on CCDC171
3'UTR of CCDC171
(miRNA target sites are highlighted)
>CCDC171|NM_173550|3'UTR
   1 CTTCATGAAATTAAAAAATGGAGGAAGAGTTAACAGTACAATTAAAATTGTTTTGAATGGGAATTTTCTTATCAGTTGAC
  81 TTTTGTTTCAGCAGAAGTGGCAGTGGATTTAAAAAATTTGTGCGCTATCTTGATGTATTCTGGTAGCTCTGTCTCCTTGA
 161 ATAAGGAAATAGCCAACTTTTTTCTCTCCAAGTTTTATTTGTTATCACAGTTGCTCATTTTTATGTAACATATTTTTAAA
 241 TGTTAAGGAATGACACATTTTGGGTAATTTCCCTCAGACTTAAAAAAATCAATAAGCCATTTTAGTCTCTATCTATCAAA
 321 GTTGTTTCATACTTGTCTATTTTAAAGCAGGACTGCAATGCTTTAATAGGATTGAGAGAGCTATTTGAAATGTATGCCAA
 401 TGATTCCTGTCATTTCATGGCAGCCCGGCCATGGTTCACTGAGCCCCCTCTTCTCTCTTGTCAGCTCAACTGAAGACAAG
 481 CATTTAGTTGCAAACTTTAAGCAGGTTGTGCAAAACAGAAATGATGTGACTGCTTCTCCTCCTGCACAATAATGTCACTC
 561 CTGGTCAATGTGAGAAGGTCAGGTTGCTCCTTGTAAAGCTACATGATACCACTTGCCCATTTGAACAAGTTAAGTTAACT
 641 GCTGAATCTGGTCCCTGAAGGCACTGAAAACTCATTCTTTTAGCAAGTCTGCATTTGATAAGAAAGTAGAGCAATTGTGC
 721 TGGAGGATTTCTGTGGTATGTTTAGGCACTTCATAAGGACAGTTCCCACACTAGGATAGCAGGTAATATATTTAGTATAA
 801 GCTGAAAAACTTCAAGGTAATGGCTGTTTTGACCTTCAAAATAGACTCCTTTTTTGTTTTTGTTGTTGGTAGGACCCAAG
 881 AGTGACACCCATCTTTGATGCTGACAGAATTTAAAACAAGGCCATTGCCCTGCATTTTCTGCCTTGTAGCACACAAAAGT
 961 AAAATTGTATGTCAGGCCGAGATGTCGGGGAGCTGACAAGATGCCCCAGTGACATTTCAGCTAGAAAGAGCAAGTGTCTT
1041 GCAACCAAGTGGTCAAATATCAAATAATAGGTCAAGCAGGAAGGAGCTGAGTTCTAACCACAAAGAGGTTTCTGGTAACT
1121 TACTTGACAAGCTTTTGGGTGCTTTGTGGCTTGACAAAGTGATGTTCTGTTGGGTATCGCTAGACAGACTGTTCTTTATC
1201 GCCTTCAGAAGATCAGACATTGACATTGATTAAACTCTTTAACCCTTAAAGGTTAAATCCTTGCAGTTTGCATCATGGTA
1281 AGTGAAGAACAAAAGAATATTTGTAGTAAGAATTTGTTTTTGTATTAATCATTTAACTCCCTAGTGCTATTAACTTCTGA
1361 TGTGAACTATAGCTTTTGACAAAGAGTCTTGATACATAATCTATTTTTTATATTATTTTTCATTATGGAATCTTTCATTA
1441 TGGATACATTAGAGTATAACAGTATGTATTACAGAAGTTTTTTTGTCTTATCTTTACAGTGACATTTGATTCAAATTACC
1521 CAACTGCTGAGAATTTTTTTATTGGCCTTGGTAAATAAGATTTTATACTAACTATTTATTAGTAGCCAAATTAGCCAAGT
1601 GATTTATGCCATCTGAGGGAACACAGCAGTATTACTGTCGTACTGTGTAACACATCCTATTCTTGTAATACTGAACCACT
1681 ATAATTAGCTTTATATAAAACTTTAGAAAGCTTATATGGAGTAAAATTATATCTTTAACCAAATTTCTCTTAATTCTTTC
1761 CTTGGAATTATTTTTAATATGACCTGTGTAACATGACCTGTATGAAATTCAACTTGCAAATTTATTATAACATGGAAGTG
1841 CTATTTATTGTTTTTATACAGATCATATAATTTCTGCACATTTCAGAACACCTTTCTCTGCTGTTCCAAACAATGATTAG
1921 GATATTGTTCATACAGAAATTGATAGACAATTTTTTAGTTCATGTGATATCACTGAGCTTACAATTCTCACTAGAGAAGA
2001 ACAAGGTTACTATATGTAACCTCTATGTCTAAGTGTTTGTGTGTGTGTATGCTTGTGTTGAATCTGTTTTCAGATCCTAC
2081 TGATTTTAGAGGAACAAGCAGCTTTGTAAAATGTGCCTTGGAAAGGCCTTGGTCTTCTTGCCTTGATTTTATAATCTGTT
2161 AATGGGATAACTCCAAAAATAAATGTGTATGTGTCTCCATATAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' agGACCUACGUUUAAAAu 5'
            :|| ||| :|||||| 
Target 5' ttTTGAATGGGAATTTTc 3'
51 - 68 144.00 -6.90
2
miRNA  3' aggaccuACGUUUAAAau 5'
                 |||||||||  
Target 5' ttcaactTGCAAATTTat 3'
1808 - 1825 135.00 -5.30
3
miRNA  3' aggACCUACG---UUUAAAau 5'
             ||||| :   ||||||  
Target 5' cagTGGATTTAAAAAATTTgt 3'
101 - 121 131.00 -5.20
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN30113460 8 COSMIC
COSN26969465 13 COSMIC
COSN31611855 26 COSMIC
COSN30131336 28 COSMIC
COSN30532322 38 COSMIC
COSN2313787 46 COSMIC
COSN30114887 48 COSMIC
COSN30503747 58 COSMIC
COSN30520919 62 COSMIC
COSN16695315 121 COSMIC
COSN30434383 341 COSMIC
COSN32062459 427 COSMIC
COSN2313788 775 COSMIC
COSN2313789 776 COSMIC
COSN7560422 812 COSMIC
COSN25986009 928 COSMIC
COSN20753504 1199 COSMIC
COSN16366151 1311 COSMIC
COSN2313790 1335 COSMIC
COSN19515218 1485 COSMIC
COSN17837706 1531 COSMIC
COSN27650790 1890 COSMIC
COSN26820373 2067 COSMIC
rs10756728 1455 GWAS
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1355687605 1 dbSNP
rs73646894 2 dbSNP
rs561246359 3 dbSNP
rs760715331 5 dbSNP
rs377470308 6 dbSNP
rs1314387137 8 dbSNP
rs936973455 10 dbSNP
rs766590019 12 dbSNP
rs1245958973 13 dbSNP
rs754016126 17 dbSNP
rs1357919798 27 dbSNP
rs1219341959 34 dbSNP
rs1464116083 35 dbSNP
rs755211633 36 dbSNP
rs764952969 37 dbSNP
rs752494328 38 dbSNP
rs1258488346 40 dbSNP
rs1426026867 42 dbSNP
rs1424661650 47 dbSNP
rs1186576523 49 dbSNP
rs1048523797 51 dbSNP
rs1180275301 55 dbSNP
rs1486816289 58 dbSNP
rs1257134695 71 dbSNP
rs1199887860 72 dbSNP
rs375087686 74 dbSNP
rs774176765 94 dbSNP
rs532080139 96 dbSNP
rs1046551682 100 dbSNP
rs1328206754 106 dbSNP
rs1336438100 107 dbSNP
rs1436299369 109 dbSNP
rs1340642865 115 dbSNP
rs906320994 116 dbSNP
rs1393750157 117 dbSNP
rs1281959499 119 dbSNP
rs1002266565 121 dbSNP
rs190654592 124 dbSNP
rs1020523136 125 dbSNP
rs1411688074 128 dbSNP
rs537124187 135 dbSNP
rs902987019 136 dbSNP
rs1000524723 137 dbSNP
rs1326080867 139 dbSNP
rs1224555709 142 dbSNP
rs1440747134 146 dbSNP
rs1209271154 150 dbSNP
rs1264015605 150 dbSNP
rs754812247 151 dbSNP
rs1266180355 162 dbSNP
rs1356825492 163 dbSNP
rs1020769741 166 dbSNP
rs557042828 172 dbSNP
rs966932077 174 dbSNP
rs1008771916 177 dbSNP
rs1250533519 184 dbSNP
rs1327668341 189 dbSNP
rs574879797 193 dbSNP
rs1320724036 194 dbSNP
rs1433721313 195 dbSNP
rs1388478987 196 dbSNP
rs1450571243 200 dbSNP
rs532603373 203 dbSNP
rs1407398658 205 dbSNP
rs3750401 207 dbSNP
rs1162874419 212 dbSNP
rs762720544 214 dbSNP
rs1471969205 224 dbSNP
rs986128541 230 dbSNP
rs1189230686 231 dbSNP
rs879261687 236 dbSNP
rs566483050 251 dbSNP
rs542380943 252 dbSNP
rs1246072826 253 dbSNP
rs573574343 261 dbSNP
rs1223733420 262 dbSNP
rs975345819 267 dbSNP
rs921284846 274 dbSNP
rs1288954373 277 dbSNP
rs3750402 280 dbSNP
rs1340960944 281 dbSNP
rs1169778217 282 dbSNP
rs1226969259 287 dbSNP
rs972148013 290 dbSNP
rs1296012807 298 dbSNP
rs1372704339 303 dbSNP
rs182096857 306 dbSNP
rs566905079 308 dbSNP
rs919439914 308 dbSNP
rs930786419 312 dbSNP
rs940179398 314 dbSNP
rs1429151166 315 dbSNP
rs1388452758 326 dbSNP
rs985451790 330 dbSNP
rs1397248339 333 dbSNP
rs537413810 336 dbSNP
rs140552101 338 dbSNP
rs1483928760 344 dbSNP
rs1274867256 347 dbSNP
rs755959176 349 dbSNP
rs1204059741 359 dbSNP
rs75419443 360 dbSNP
rs1281925154 361 dbSNP
rs778190083 367 dbSNP
rs1368847243 368 dbSNP
rs1274797873 371 dbSNP
rs772645597 374 dbSNP
rs1434714193 376 dbSNP
rs1352758689 378 dbSNP
rs749480858 389 dbSNP
rs1429416282 392 dbSNP
rs1368786231 394 dbSNP
rs1055368646 401 dbSNP
rs1277900874 402 dbSNP
rs1325054915 406 dbSNP
rs1054771057 407 dbSNP
rs893489494 408 dbSNP
rs1170781896 409 dbSNP
rs1251554536 416 dbSNP
rs1252338965 418 dbSNP
rs1180999125 425 dbSNP
rs949852378 426 dbSNP
rs538464664 427 dbSNP
rs1219667933 428 dbSNP
rs1311135499 432 dbSNP
rs1278499064 436 dbSNP
rs771065825 439 dbSNP
rs1289445063 447 dbSNP
rs1042678758 448 dbSNP
rs1293850882 449 dbSNP
rs1348798399 454 dbSNP
rs1490509220 458 dbSNP
rs879840510 466 dbSNP
rs1304835815 468 dbSNP
rs1448803540 472 dbSNP
rs1358700302 480 dbSNP
rs142802525 492 dbSNP
rs1259317650 495 dbSNP
rs1009113247 499 dbSNP
rs1018782902 507 dbSNP
rs572477145 509 dbSNP
rs1032969198 514 dbSNP
rs1430112986 519 dbSNP
rs901230977 522 dbSNP
rs889020034 526 dbSNP
rs1471499198 529 dbSNP
rs1415456943 530 dbSNP
rs1373899743 531 dbSNP
rs1182125548 532 dbSNP
rs1482630570 536 dbSNP
rs1424097120 539 dbSNP
rs774238666 543 dbSNP
rs536728973 544 dbSNP
rs1202325983 548 dbSNP
rs1466589274 550 dbSNP
rs746393502 553 dbSNP
rs1028393939 567 dbSNP
rs952697435 570 dbSNP
rs1315542945 577 dbSNP
rs1271944785 581 dbSNP
rs1229158023 584 dbSNP
rs1315075833 584 dbSNP
rs1288829988 585 dbSNP
rs1383196572 588 dbSNP
rs966013494 592 dbSNP
rs555067223 603 dbSNP
rs772523815 604 dbSNP
rs1319844353 618 dbSNP
rs984123341 626 dbSNP
rs1339571548 627 dbSNP
rs546398076 628 dbSNP
rs1243118157 630 dbSNP
rs1422950329 638 dbSNP
rs187134723 663 dbSNP
rs984972021 668 dbSNP
rs1449570648 677 dbSNP
rs543794950 678 dbSNP
rs959600919 684 dbSNP
rs1359538413 690 dbSNP
rs555980596 692 dbSNP
rs1215752659 703 dbSNP
rs992341274 715 dbSNP
rs775966271 726 dbSNP
rs928172993 729 dbSNP
rs1486708329 731 dbSNP
rs937715183 734 dbSNP
rs761080761 754 dbSNP
rs990554383 763 dbSNP
rs1380515766 770 dbSNP
rs915016764 771 dbSNP
rs565452401 772 dbSNP
rs1482507561 778 dbSNP
rs1293832007 780 dbSNP
rs1042064388 783 dbSNP
rs949713126 784 dbSNP
rs1347707427 789 dbSNP
rs902389491 795 dbSNP
rs944658474 807 dbSNP
rs1429795828 814 dbSNP
rs1389071936 818 dbSNP
rs1188477744 821 dbSNP
rs371030004 826 dbSNP
rs764415197 829 dbSNP
rs772878784 834 dbSNP
rs1270108988 836 dbSNP
rs577454015 841 dbSNP
rs1488375934 842 dbSNP
rs1387124918 844 dbSNP
rs924383156 849 dbSNP
rs1445340588 857 dbSNP
rs1207619542 861 dbSNP
rs541307472 863 dbSNP
rs1362608071 865 dbSNP
rs1455668963 866 dbSNP
rs1054278566 869 dbSNP
rs900333351 886 dbSNP
rs1301925265 887 dbSNP
rs1405823732 892 dbSNP
rs1343455352 907 dbSNP
rs995990772 917 dbSNP
rs1028364137 918 dbSNP
rs1410119372 923 dbSNP
rs1338325799 924 dbSNP
rs1165591779 927 dbSNP
rs888562561 930 dbSNP
rs1040278688 941 dbSNP
rs369910856 942 dbSNP
rs1382819012 943 dbSNP
rs1267281778 944 dbSNP
rs901846387 949 dbSNP
rs1005930576 951 dbSNP
rs1304785375 952 dbSNP
rs1318722940 956 dbSNP
rs1239702314 961 dbSNP
rs1483467049 961 dbSNP
rs1015595395 967 dbSNP
rs961903594 968 dbSNP
rs373085341 970 dbSNP
rs1347260998 972 dbSNP
rs1026853452 978 dbSNP
rs952143373 979 dbSNP
rs1035708788 980 dbSNP
rs1228789514 982 dbSNP
rs1033821797 987 dbSNP
rs959508445 988 dbSNP
rs762461369 990 dbSNP
rs992372340 996 dbSNP
rs1303948682 998 dbSNP
rs765924632 1007 dbSNP
rs1406405177 1014 dbSNP
rs1421337111 1023 dbSNP
rs918161986 1027 dbSNP
rs1427810425 1037 dbSNP
rs914961542 1039 dbSNP
rs572566866 1040 dbSNP
rs1428977083 1044 dbSNP
rs1468584169 1048 dbSNP
rs1178111358 1070 dbSNP
rs527417820 1073 dbSNP
rs191518141 1079 dbSNP
rs1199804546 1085 dbSNP
rs924385001 1087 dbSNP
rs1209169494 1088 dbSNP
rs923644389 1089 dbSNP
rs1328180257 1095 dbSNP
rs767619585 1099 dbSNP
rs1246462553 1101 dbSNP
rs1340556334 1108 dbSNP
rs1295890328 1110 dbSNP
rs147437819 1114 dbSNP
rs866715029 1116 dbSNP
rs1323100060 1124 dbSNP
rs1040276047 1125 dbSNP
rs752658658 1143 dbSNP
rs1374887456 1144 dbSNP
rs1185969975 1147 dbSNP
rs938244226 1154 dbSNP
rs943147794 1160 dbSNP
rs531209567 1165 dbSNP
rs756014091 1171 dbSNP
rs1048887861 1174 dbSNP
rs1055336242 1176 dbSNP
rs901755773 1179 dbSNP
rs993928001 1180 dbSNP
rs1209226968 1190 dbSNP
rs1249856647 1190 dbSNP
rs1321122770 1192 dbSNP
rs888489251 1194 dbSNP
rs1281802758 1201 dbSNP
rs868864182 1202 dbSNP
rs1225159786 1206 dbSNP
rs1005650548 1213 dbSNP
rs549326252 1218 dbSNP
rs887745126 1219 dbSNP
rs1006279570 1225 dbSNP
rs1037410933 1228 dbSNP
rs1265227183 1236 dbSNP
rs1366689427 1238 dbSNP
rs1473443739 1241 dbSNP
rs571497496 1253 dbSNP
rs373200721 1254 dbSNP
rs1204105477 1261 dbSNP
rs895352366 1262 dbSNP
rs1316759542 1274 dbSNP
rs1231179402 1275 dbSNP
rs1481675239 1276 dbSNP
rs1178228373 1277 dbSNP
rs1163131762 1279 dbSNP
rs1268857232 1287 dbSNP
rs1422848835 1297 dbSNP
rs1479660810 1304 dbSNP
rs1392040891 1305 dbSNP
rs1202124359 1312 dbSNP
rs1430447569 1313 dbSNP
rs1475082360 1314 dbSNP
rs1240271267 1318 dbSNP
rs1013703870 1323 dbSNP
rs3008747 1328 dbSNP
rs1266269426 1331 dbSNP
rs1219734342 1335 dbSNP
rs1035267553 1338 dbSNP
rs959619205 1340 dbSNP
rs1167921516 1341 dbSNP
rs1012382454 1350 dbSNP
rs1355725931 1353 dbSNP
rs1339368532 1355 dbSNP
rs1268906485 1363 dbSNP
rs1439092617 1365 dbSNP
rs1331993885 1370 dbSNP
rs1022490411 1376 dbSNP
rs1403265138 1381 dbSNP
rs1372640219 1386 dbSNP
rs181375622 1388 dbSNP
rs565884064 1396 dbSNP
rs1417344259 1400 dbSNP
rs536424987 1401 dbSNP
rs1478245424 1404 dbSNP
rs989908591 1405 dbSNP
rs1196838523 1407 dbSNP
rs1483868691 1410 dbSNP
rs73411587 1411 dbSNP
rs943220020 1413 dbSNP
rs1203263475 1417 dbSNP
rs149947947 1426 dbSNP
rs757355880 1428 dbSNP
rs537486991 1437 dbSNP
rs1221381878 1439 dbSNP
rs1346159438 1448 dbSNP
rs12346048 1449 dbSNP
rs921815770 1451 dbSNP
rs931900335 1452 dbSNP
rs10756728 1455 dbSNP
rs1352614113 1462 dbSNP
rs1308832072 1464 dbSNP
rs541694069 1466 dbSNP
rs909062087 1471 dbSNP
rs1048082822 1472 dbSNP
rs1352786448 1475 dbSNP
rs1336105040 1478 dbSNP
rs1271171078 1479 dbSNP
rs1414901015 1483 dbSNP
rs1309305624 1486 dbSNP
rs1206002910 1488 dbSNP
rs559759718 1490 dbSNP
rs373040354 1497 dbSNP
rs1174065231 1500 dbSNP
rs543499612 1504 dbSNP
rs772119735 1505 dbSNP
rs1473435396 1510 dbSNP
rs35670397 1517 dbSNP
rs940547254 1519 dbSNP
rs1055176457 1527 dbSNP
rs776021364 1532 dbSNP
rs1210204071 1541 dbSNP
rs895216760 1542 dbSNP
rs1013737854 1550 dbSNP
rs1270003269 1551 dbSNP
rs185795994 1555 dbSNP
rs1308002982 1556 dbSNP
rs560658870 1560 dbSNP
rs1371279793 1566 dbSNP
rs529237267 1566 dbSNP
rs1421258944 1567 dbSNP
rs1448825729 1567 dbSNP
rs1334564135 1569 dbSNP
rs1003537547 1582 dbSNP
rs902573342 1587 dbSNP
rs999786655 1594 dbSNP
rs1157924849 1598 dbSNP
rs1398660148 1599 dbSNP
rs1415495080 1600 dbSNP
rs1032974898 1603 dbSNP
rs1056481463 1605 dbSNP
rs989810348 1614 dbSNP
rs1182232714 1616 dbSNP
rs1466538702 1620 dbSNP
rs895376446 1623 dbSNP
rs867965193 1627 dbSNP
rs747479432 1640 dbSNP
rs74869881 1641 dbSNP
rs923146681 1644 dbSNP
rs1312852256 1646 dbSNP
rs929091794 1650 dbSNP
rs968227857 1650 dbSNP
rs1000142255 1657 dbSNP
rs983395901 1658 dbSNP
rs1288132155 1660 dbSNP
rs909119954 1663 dbSNP
rs549539296 1665 dbSNP
rs966193634 1666 dbSNP
rs769026599 1672 dbSNP
rs895123479 1673 dbSNP
rs921620396 1683 dbSNP
rs953266167 1701 dbSNP
rs776920622 1712 dbSNP
rs1451949027 1713 dbSNP
rs762673411 1716 dbSNP
rs190116182 1717 dbSNP
rs1229433199 1721 dbSNP
rs531979836 1730 dbSNP
rs1000096433 1731 dbSNP
rs766014642 1740 dbSNP
rs1036638793 1745 dbSNP
rs1225307580 1748 dbSNP
rs1289771689 1754 dbSNP
rs918640283 1757 dbSNP
rs939451601 1761 dbSNP
rs1294733472 1762 dbSNP
rs1446755952 1772 dbSNP
rs1214179459 1785 dbSNP
rs894041885 1787 dbSNP
rs1369400755 1793 dbSNP
rs1011274210 1798 dbSNP
rs1017293358 1808 dbSNP
rs547694108 1812 dbSNP
rs964350016 1817 dbSNP
rs1429799066 1828 dbSNP
rs1374182319 1829 dbSNP
rs1485956691 1841 dbSNP
rs549027049 1842 dbSNP
rs1427126556 1857 dbSNP
rs1427625339 1860 dbSNP
rs182336261 1863 dbSNP
rs948061248 1868 dbSNP
rs1490264897 1869 dbSNP
rs1267013771 1871 dbSNP
rs1207432727 1876 dbSNP
rs10756729 1879 dbSNP
rs144903973 1881 dbSNP
rs904139845 1893 dbSNP
rs1313742732 1897 dbSNP
rs1283761425 1899 dbSNP
rs999667943 1902 dbSNP
rs1031587329 1903 dbSNP
rs983671974 1904 dbSNP
rs1391491147 1907 dbSNP
rs1407215366 1908 dbSNP
rs1398731343 1910 dbSNP
rs909163174 1912 dbSNP
rs1460978555 1914 dbSNP
rs1345571842 1917 dbSNP
rs963278617 1921 dbSNP
rs990674644 1923 dbSNP
rs570207059 1931 dbSNP
rs1336351316 1932 dbSNP
rs949355696 1933 dbSNP
rs1046512135 1935 dbSNP
rs1194144920 1938 dbSNP
rs772635328 1944 dbSNP
rs997232419 1951 dbSNP
rs1380649335 1961 dbSNP
rs148599188 1967 dbSNP
rs935535202 1968 dbSNP
rs767104805 1970 dbSNP
rs1054347685 1973 dbSNP
rs953030221 1985 dbSNP
rs558713164 1988 dbSNP
rs143278997 1989 dbSNP
rs1248314421 1990 dbSNP
rs984460049 1996 dbSNP
rs1285298851 2000 dbSNP
rs1385673534 2002 dbSNP
rs534680510 2004 dbSNP
rs1016174690 2005 dbSNP
rs553631245 2006 dbSNP
rs1222576020 2011 dbSNP
rs528850188 2026 dbSNP
rs971899498 2027 dbSNP
rs997583805 2034 dbSNP
rs1465655515 2040 dbSNP
rs928471677 2044 dbSNP
rs1179803938 2047 dbSNP
rs752703649 2048 dbSNP
rs1202586746 2050 dbSNP
rs1030106125 2053 dbSNP
rs1462240703 2061 dbSNP
rs992226001 2064 dbSNP
rs542059382 2065 dbSNP
rs1187716228 2067 dbSNP
rs916707677 2075 dbSNP
rs1243705428 2083 dbSNP
rs1231830183 2087 dbSNP
rs948029604 2091 dbSNP
rs1043757641 2100 dbSNP
rs1004608078 2102 dbSNP
rs904067235 2112 dbSNP
rs1349572896 2116 dbSNP
rs1160263525 2117 dbSNP
rs1258549872 2123 dbSNP
rs760632018 2128 dbSNP
rs990707247 2129 dbSNP
rs935598106 2133 dbSNP
rs1316369417 2135 dbSNP
rs1469146526 2139 dbSNP
rs1381218685 2142 dbSNP
rs1175937007 2154 dbSNP
rs970795763 2175 dbSNP
rs1384571114 2177 dbSNP
rs982500992 2187 dbSNP
rs763984373 2188 dbSNP
rs557111546 2190 dbSNP
rs1385875860 2196 dbSNP
rs935424914 2198 dbSNP
rs1243756735 2201 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HEK293S
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in GSM1084064. RNA binding protein: AGO2. Condition:CLIP_noemetine_AbnovaAb HITS-CLIP data was present in GSM1084079. RNA binding protein: AGO2. Condition:CLIP_hippuristanol_rep2_AbnovaAb ...

- Karginov FV; Hannon GJ, 2013, Genes & development.

Article - Karginov FV; Hannon GJ
- Genes & development, 2013
When adapting to environmental stress, cells attenuate and reprogram their translational output. In part, these altered translation profiles are established through changes in the interactions between RNA-binding proteins and mRNAs. The Argonaute 2 (Ago2)/microRNA (miRNA) machinery has been shown to participate in stress-induced translational up-regulation of a particular mRNA, CAT-1; however, a detailed, transcriptome-wide understanding of the involvement of Ago2 in the process has been lacking. Here, we profiled the overall changes in Ago2-mRNA interactions upon arsenite stress by cross-linking immunoprecipitation (CLIP) followed by high-throughput sequencing (CLIP-seq). Ago2 displayed a significant remodeling of its transcript occupancy, with the majority of 3' untranslated region (UTR) and coding sequence (CDS) sites exhibiting stronger interaction. Interestingly, target sites that were destined for release from Ago2 upon stress were depleted in miRNA complementarity signatures, suggesting an alternative mode of interaction. To compare the changes in Ago2-binding patterns across transcripts with changes in their translational states, we measured mRNA profiles on ribosome/polysome gradients by RNA sequencing (RNA-seq). Increased Ago2 occupancy correlated with stronger repression of translation for those mRNAs, as evidenced by a shift toward lighter gradient fractions upon stress, while release of Ago2 was associated with the limited number of transcripts that remained translated. Taken together, these data point to a role for Ago2 and the mammalian miRNAs in mediating the translational component of the stress response.
LinkOut: [PMID: 23824327]
CLIP-seq Support 1 for dataset GSM1084064
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_noemetine_AbnovaAb
Location of target site ENST00000380701.3 | 3UTR | AAGAGAAAAAAAAAUUU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM1084079
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_hippuristanol_rep2_AbnovaAb
Location of target site ENST00000380701.3 | 3UTR | UAAAGAGAAAAAAAAAUUUU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
280 hsa-miR-4282 Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT057628 LCOR ligand dependent nuclear receptor corepressor 2 2
MIRT060732 RPS3 ribosomal protein S3 2 2
MIRT063371 ETNK1 ethanolamine kinase 1 2 2
MIRT066257 LRIG3 leucine rich repeats and immunoglobulin like domains 3 2 4
MIRT070774 HIF1A hypoxia inducible factor 1 alpha subunit 2 2
MIRT070871 EIF2S1 eukaryotic translation initiation factor 2 subunit alpha 2 4
MIRT078056 PCTP phosphatidylcholine transfer protein 2 2
MIRT078408 DCAF7 DDB1 and CUL4 associated factor 7 2 4
MIRT084059 PPP1R3D protein phosphatase 1 regulatory subunit 3D 2 2
MIRT093537 GALNT7 polypeptide N-acetylgalactosaminyltransferase 7 2 6
MIRT096072 SFXN1 sideroflexin 1 2 2
MIRT098316 REV3L REV3 like, DNA directed polymerase zeta catalytic subunit 2 2
MIRT100493 UHRF1BP1 UHRF1 binding protein 1 2 2
MIRT102254 HBP1 HMG-box transcription factor 1 2 4
MIRT105318 VPS37A VPS37A, ESCRT-I subunit 2 2
MIRT114143 MZT1 mitotic spindle organizing protein 1 2 4
MIRT114873 DICER1 dicer 1, ribonuclease III 2 2
MIRT134683 PNRC2 proline rich nuclear receptor coactivator 2 2 2
MIRT137640 RCOR1 REST corepressor 1 2 2
MIRT155449 CCNT2 cyclin T2 2 4
MIRT165656 DCTN4 dynactin subunit 4 2 2
MIRT177570 CSTF2T cleavage stimulation factor subunit 2 tau variant 2 4
MIRT188514 E2F7 E2F transcription factor 7 2 10
MIRT193019 TMOD3 tropomodulin 3 2 4
MIRT195823 GADD45A growth arrest and DNA damage inducible alpha 2 2
MIRT195885 DEPDC1 DEP domain containing 1 2 6
MIRT206029 NUP50 nucleoporin 50 2 6
MIRT212148 CLCN3 chloride voltage-gated channel 3 2 2
MIRT213999 DCP2 decapping mRNA 2 2 2
MIRT214650 HNRNPA0 heterogeneous nuclear ribonucleoprotein A0 2 2
MIRT221568 CBX3 chromobox 3 2 2
MIRT224544 ZNF623 zinc finger protein 623 2 2
MIRT227654 SET SET nuclear proto-oncogene 2 2
MIRT229992 CHIC1 cysteine rich hydrophobic domain 1 2 2
MIRT238968 QKI QKI, KH domain containing RNA binding 2 2
MIRT239825 ACTB actin beta 2 2
MIRT241084 ZXDA zinc finger, X-linked, duplicated A 2 4
MIRT244852 ZBTB5 zinc finger and BTB domain containing 5 2 2
MIRT264534 TARDBP TAR DNA binding protein 2 2
MIRT271438 SKI SKI proto-oncogene 2 2
MIRT271597 ENAH ENAH, actin regulator 2 2
MIRT294332 ZNF264 zinc finger protein 264 2 2
MIRT296341 PARD6B par-6 family cell polarity regulator beta 2 2
MIRT301715 TEF TEF, PAR bZIP transcription factor 2 2
MIRT308549 ZNF654 zinc finger protein 654 2 2
MIRT313866 DEPDC1B DEP domain containing 1B 2 2
MIRT315529 MARCKS myristoylated alanine rich protein kinase C substrate 2 2
MIRT321066 RABGEF1 RAB guanine nucleotide exchange factor 1 2 2
MIRT343777 NUTF2 nuclear transport factor 2 2 2
MIRT359109 MAP1B microtubule associated protein 1B 2 2
MIRT397393 GOLGA3 golgin A3 2 4
MIRT400822 CPEB2 cytoplasmic polyadenylation element binding protein 2 2 2
MIRT442171 DSEL dermatan sulfate epimerase-like 2 2
MIRT442777 JAG1 jagged 1 2 2
MIRT442862 SCARF1 scavenger receptor class F member 1 2 4
MIRT442919 PCBD2 pterin-4 alpha-carbinolamine dehydratase 2 2 2
MIRT444567 TRA2B transformer 2 beta homolog 2 2
MIRT444718 CMSS1 cms1 ribosomal small subunit homolog (yeast) 2 2
MIRT445018 RBMS3 RNA binding motif single stranded interacting protein 3 2 2
MIRT445853 LRRC1 leucine rich repeat containing 1 2 2
MIRT446242 HELZ helicase with zinc finger 2 2
MIRT446542 GOLGA8B golgin A8 family member B 2 2
MIRT446643 SPTY2D1 SPT2 chromatin protein domain containing 1 2 2
MIRT446948 ZMAT3 zinc finger matrin-type 3 2 4
MIRT447061 KCNAB1 potassium voltage-gated channel subfamily A member regulatory beta subunit 1 2 2
MIRT447327 ZSCAN21 zinc finger and SCAN domain containing 21 2 2
MIRT447995 CDX1 caudal type homeobox 1 2 2
MIRT448543 RHEBP1 RHEB pseudogene 1 2 6
MIRT448752 HINT1 histidine triad nucleotide binding protein 1 2 2
MIRT448772 GOLGA8A golgin A8 family member A 2 2
MIRT449342 WDR26 WD repeat domain 26 2 2
MIRT450011 SLC16A6 solute carrier family 16 member 6 2 4
MIRT450229 PCNX pecanex homolog 1 2 2
MIRT450340 MRPL17 mitochondrial ribosomal protein L17 2 4
MIRT450381 MSI2 musashi RNA binding protein 2 2 2
MIRT450759 PGGT1B protein geranylgeranyltransferase type I subunit beta 2 2
MIRT450809 NRCAM neuronal cell adhesion molecule 2 2
MIRT450947 ATAD2 ATPase family, AAA domain containing 2 2 2
MIRT459095 CCPG1 cell cycle progression 1 2 2
MIRT462428 TWISTNB TWIST neighbor 2 2
MIRT465200 TROVE2 TROVE domain family member 2 2 4
MIRT467382 SON SON DNA binding protein 2 4
MIRT468546 SERP1 stress associated endoplasmic reticulum protein 1 2 2
MIRT471506 PDE4D phosphodiesterase 4D 2 2
MIRT471981 NR3C1 nuclear receptor subfamily 3 group C member 1 2 2
MIRT474478 KLHL11 kelch like family member 11 2 8
MIRT475011 KANSL1 KAT8 regulatory NSL complex subunit 1 2 8
MIRT480341 C5orf51 chromosome 5 open reading frame 51 2 2
MIRT482696 TEX9 testis expressed 9 2 6
MIRT483462 YTHDF1 YTH N6-methyladenosine RNA binding protein 1 2 6
MIRT485623 FAM217B family with sequence similarity 217 member B 2 2
MIRT485714 CASP16 caspase 16, pseudogene 2 8
MIRT486279 SEC23A Sec23 homolog A, coat complex II component 2 2
MIRT491000 PEBP1 phosphatidylethanolamine binding protein 1 2 4
MIRT492594 PPIL4 peptidylprolyl isomerase like 4 2 2
MIRT493365 KIF5B kinesin family member 5B 2 2
MIRT494316 CDKN1B cyclin dependent kinase inhibitor 1B 2 2
MIRT495208 EDN3 endothelin 3 2 2
MIRT497011 TCF15 transcription factor 15 2 2
MIRT498512 FRK fyn related Src family tyrosine kinase 2 2
MIRT498778 PARP15 poly(ADP-ribose) polymerase family member 15 2 2
MIRT501045 SMG1 SMG1, nonsense mediated mRNA decay associated PI3K related kinase 2 6
MIRT502939 CDC37L1 cell division cycle 37 like 1 2 8
MIRT504806 VHL von Hippel-Lindau tumor suppressor 2 6
MIRT505656 SHMT1 serine hydroxymethyltransferase 1 2 6
MIRT505964 RAB5C RAB5C, member RAS oncogene family 2 6
MIRT506322 OTUD4 OTU deubiquitinase 4 2 4
MIRT506803 KLHL15 kelch like family member 15 2 6
MIRT506917 KBTBD8 kelch repeat and BTB domain containing 8 2 4
MIRT507400 EMC7 ER membrane protein complex subunit 7 2 8
MIRT507471 EDEM3 ER degradation enhancing alpha-mannosidase like protein 3 2 6
MIRT508058 ATP13A3 ATPase 13A3 2 4
MIRT508135 AMD1 adenosylmethionine decarboxylase 1 2 2
MIRT509895 RPS23 ribosomal protein S23 2 4
MIRT510881 RAN RAN, member RAS oncogene family 2 8
MIRT513766 PEX5L peroxisomal biogenesis factor 5 like 2 4
MIRT516898 COPS8 COP9 signalosome subunit 8 2 2
MIRT518703 TIMD4 T-cell immunoglobulin and mucin domain containing 4 2 4
MIRT520429 TTPAL alpha tocopherol transfer protein like 2 6
MIRT521843 PNISR PNN interacting serine and arginine rich protein 2 4
MIRT522116 NUDT3 nudix hydrolase 3 2 4
MIRT525467 TMPRSS12 transmembrane protease, serine 12 2 2
MIRT525583 MTRNR2L7 MT-RNR2-like 7 2 2
MIRT525906 BUB1 BUB1 mitotic checkpoint serine/threonine kinase 2 2
MIRT526072 C11orf54 chromosome 11 open reading frame 54 2 2
MIRT526232 MTRNR2L5 MT-RNR2-like 5 2 4
MIRT526455 FAM71F2 family with sequence similarity 71 member F2 2 4
MIRT526515 POU5F1B POU class 5 homeobox 1B 2 2
MIRT528032 FEZ2 fasciculation and elongation protein zeta 2 2 2
MIRT528422 MRPS16 mitochondrial ribosomal protein S16 2 2
MIRT528995 ISLR2 immunoglobulin superfamily containing leucine rich repeat 2 2 4
MIRT529311 ATRNL1 attractin like 1 2 2
MIRT529376 SKP1 S-phase kinase associated protein 1 2 4
MIRT530015 SRRM1 serine and arginine repetitive matrix 1 2 2
MIRT530089 FMN2 formin 2 2 2
MIRT530942 ENPP6 ectonucleotide pyrophosphatase/phosphodiesterase 6 2 2
MIRT531229 HIST1H2BD histone cluster 1 H2B family member d 2 2
MIRT533088 YTHDF3 YTH N6-methyladenosine RNA binding protein 3 2 2
MIRT533299 USP46 ubiquitin specific peptidase 46 2 2
MIRT533318 UNKL unkempt family like zinc finger 2 2
MIRT533721 TMEM30A transmembrane protein 30A 2 2
MIRT534096 AZF1 azoospermia factor 1 2 2
MIRT534188 SLC7A11 solute carrier family 7 member 11 2 2
MIRT534493 SAR1B secretion associated Ras related GTPase 1B 2 2
MIRT536077 MBOAT2 membrane bound O-acyltransferase domain containing 2 2 2
MIRT536242 LRIG2 leucine rich repeats and immunoglobulin like domains 2 2 2
MIRT537524 FAM104A family with sequence similarity 104 member A 2 2
MIRT538088 DGKH diacylglycerol kinase eta 2 2
MIRT538475 CNBP CCHC-type zinc finger nucleic acid binding protein 2 2
MIRT538853 BTG1 BTG anti-proliferation factor 1 2 4
MIRT539075 GDNF glial cell derived neurotrophic factor 2 2
MIRT539480 ACVR2B activin A receptor type 2B 2 4
MIRT540210 ARHGAP18 Rho GTPase activating protein 18 2 2
MIRT541940 TSPAN2 tetraspanin 2 2 2
MIRT543812 COCH cochlin 2 2
MIRT545120 PDZRN4 PDZ domain containing ring finger 4 2 2
MIRT545571 GIMAP4 GTPase, IMAP family member 4 2 2
MIRT545989 XKR4 XK related 4 2 2
MIRT547213 PANK3 pantothenate kinase 3 2 4
MIRT547740 KIAA1468 KIAA1468 2 2
MIRT548022 GRB2 growth factor receptor bound protein 2 2 4
MIRT548032 GOLIM4 golgi integral membrane protein 4 2 2
MIRT548102 GFPT1 glutamine--fructose-6-phosphate transaminase 1 2 4
MIRT548217 FKBP1A FK506 binding protein 1A 2 2
MIRT548588 DDX3X DEAD-box helicase 3, X-linked 2 4
MIRT548953 CDC27 cell division cycle 27 2 2
MIRT549072 CACUL1 CDK2 associated cullin domain 1 2 2
MIRT550368 INCENP inner centromere protein 2 6
MIRT550546 MYZAP myocardial zonula adherens protein 2 2
MIRT551491 TMEM192 transmembrane protein 192 2 4
MIRT553078 UEVLD UEV and lactate/malate dehyrogenase domains 2 2
MIRT554104 SMU1 DNA replication regulator and spliceosomal factor 2 2
MIRT555127 PTPRG protein tyrosine phosphatase, receptor type G 2 2
MIRT555477 POC1B-GALNT4 POC1B-GALNT4 readthrough 2 2
MIRT555978 NPTN neuroplastin 2 2
MIRT557011 HPRT1 hypoxanthine phosphoribosyltransferase 1 2 2
MIRT557706 GALNT4 polypeptide N-acetylgalactosaminyltransferase 4 2 2
MIRT558333 DNAJC28 DnaJ heat shock protein family (Hsp40) member C28 2 4
MIRT558488 DBN1 drebrin 1 2 2
MIRT559942 ZNF567 zinc finger protein 567 2 2
MIRT561127 ATP2B1 ATPase plasma membrane Ca2+ transporting 1 2 2
MIRT561791 PAWR pro-apoptotic WT1 regulator 2 2
MIRT562438 EEF2 eukaryotic translation elongation factor 2 2 2
MIRT563102 PABPC4L poly(A) binding protein cytoplasmic 4 like 2 2
MIRT563212 ZNF813 zinc finger protein 813 2 2
MIRT563426 KIF3A kinesin family member 3A 2 2
MIRT563473 SPIN4 spindlin family member 4 2 2
MIRT564015 HSPA4 heat shock protein family A (Hsp70) member 4 2 4
MIRT564117 ZYG11B zyg-11 family member B, cell cycle regulator 2 2
MIRT564223 SDE2 SDE2 telomere maintenance homolog 2 2
MIRT564503 CACNG1 calcium voltage-gated channel auxiliary subunit gamma 1 2 2
MIRT564515 DUSP3 dual specificity phosphatase 3 2 2
MIRT564811 ZBTB21 zinc finger and BTB domain containing 21 2 2
MIRT565265 TPD52 tumor protein D52 2 2
MIRT566012 RHOB ras homolog family member B 2 2
MIRT566216 PTMA prothymosin, alpha 2 2
MIRT566638 NFYA nuclear transcription factor Y subunit alpha 2 2
MIRT566821 MAPK8 mitogen-activated protein kinase 8 2 2
MIRT566948 LEPROT leptin receptor overlapping transcript 2 2
MIRT567290 HNRNPAB heterogeneous nuclear ribonucleoprotein A/B 2 2
MIRT567895 CSTF2 cleavage stimulation factor subunit 2 2 2
MIRT568731 MTRNR2L3 MT-RNR2-like 3 2 2
MIRT571263 ZNF239 zinc finger protein 239 2 2
MIRT572593 EIF2AK4 eukaryotic translation initiation factor 2 alpha kinase 4 2 2
MIRT573827 TGOLN2 trans-golgi network protein 2 2 2
MIRT576391 Fhl2 four and a half LIM domains 2 2 2
MIRT609901 SMS spermine synthase 2 2
MIRT613710 ELMSAN1 ELM2 and Myb/SANT domain containing 1 2 2
MIRT614406 ADAT1 adenosine deaminase, tRNA specific 1 2 2
MIRT615042 DCX doublecortin 2 2
MIRT617514 C5orf45 MRN complex interacting protein 2 2
MIRT619476 PRDM10 PR/SET domain 10 2 2
MIRT620349 TLN1 talin 1 2 2
MIRT620910 PLA2G7 phospholipase A2 group VII 2 2
MIRT622131 SP4 Sp4 transcription factor 2 2
MIRT622955 OTUD7B OTU deubiquitinase 7B 2 2
MIRT623351 MAGI3 membrane associated guanylate kinase, WW and PDZ domain containing 3 2 2
MIRT623619 INTU inturned planar cell polarity protein 2 2
MIRT624409 CCDC171 coiled-coil domain containing 171 2 2
MIRT625171 CCS copper chaperone for superoxide dismutase 2 2
MIRT625685 RPP40 ribonuclease P/MRP subunit p40 2 2
MIRT625875 ALDH18A1 aldehyde dehydrogenase 18 family member A1 2 2
MIRT626002 FAM107A family with sequence similarity 107 member A 2 2
MIRT626872 HRH4 histamine receptor H4 2 4
MIRT628220 FKBP9 FK506 binding protein 9 2 2
MIRT628265 DIO2 iodothyronine deiodinase 2 2 2
MIRT628402 C8orf37 chromosome 8 open reading frame 37 2 2
MIRT630564 C3orf36 chromosome 3 open reading frame 36 2 4
MIRT631577 RASSF9 Ras association domain family member 9 2 2
MIRT635730 CCDC58 coiled-coil domain containing 58 2 2
MIRT636224 SLC8A1 solute carrier family 8 member A1 2 2
MIRT636613 CLIC5 chloride intracellular channel 5 2 2
MIRT638899 CDK9 cyclin dependent kinase 9 2 2
MIRT640167 ATXN7L1 ataxin 7 like 1 2 2
MIRT642070 GTDC1 glycosyltransferase like domain containing 1 2 2
MIRT643034 CHCHD7 coiled-coil-helix-coiled-coil-helix domain containing 7 2 2
MIRT644572 SPOP speckle type BTB/POZ protein 2 2
MIRT644954 IFNB1 interferon beta 1 2 2
MIRT645948 TTF2 transcription termination factor 2 2 2
MIRT646440 XRCC2 X-ray repair cross complementing 2 2 2
MIRT647896 EPN2 epsin 2 2 2
MIRT648276 ZNF582 zinc finger protein 582 2 2
MIRT649381 NEDD1 neural precursor cell expressed, developmentally down-regulated 1 2 2
MIRT650254 CD68 CD68 molecule 2 2
MIRT650333 ATP5S ATP synthase, H+ transporting, mitochondrial Fo complex subunit s (factor B) 2 2
MIRT651707 VMP1 vacuole membrane protein 1 2 2
MIRT651774 VASP vasodilator stimulated phosphoprotein 2 2
MIRT653144 SRPK2 SRSF protein kinase 2 2 2
MIRT654112 RPS6KA5 ribosomal protein S6 kinase A5 2 2
MIRT654161 RORB RAR related orphan receptor B 2 2
MIRT655716 MLF2 myeloid leukemia factor 2 2 2
MIRT657476 HDAC4 histone deacetylase 4 2 2
MIRT658095 FOXO1 forkhead box O1 2 2
MIRT658860 DTX3L deltex E3 ubiquitin ligase 3L 2 2
MIRT658988 DNAJA1 DnaJ heat shock protein family (Hsp40) member A1 2 2
MIRT660767 ALDH6A1 aldehyde dehydrogenase 6 family member A1 2 2
MIRT661622 C2orf15 chromosome 2 open reading frame 15 2 2
MIRT661694 TFDP2 transcription factor Dp-2 2 2
MIRT662208 PLA2G4E phospholipase A2 group IVE 2 2
MIRT662443 RALGAPA1 Ral GTPase activating protein catalytic alpha subunit 1 2 2
MIRT664422 ADH5 alcohol dehydrogenase 5 (class III), chi polypeptide 2 2
MIRT687505 NECAB1 N-terminal EF-hand calcium binding protein 1 2 2
MIRT689910 SOD2 superoxide dismutase 2 2 2
MIRT690781 PLA2G2C phospholipase A2 group IIC 2 2
MIRT698488 TIAL1 TIA1 cytotoxic granule associated RNA binding protein like 1 2 2
MIRT699685 SFMBT2 Scm like with four mbt domains 2 2 2
MIRT700926 PDS5A PDS5 cohesin associated factor A 2 2
MIRT702258 LMNB1 lamin B1 2 2
MIRT703166 GPR137C G protein-coupled receptor 137C 2 2
MIRT703242 GNS glucosamine (N-acetyl)-6-sulfatase 2 2
MIRT704737 CENPQ centromere protein Q 2 2
MIRT707310 GLRX2 glutaredoxin 2 2 2
MIRT710021 KCNQ5 potassium voltage-gated channel subfamily Q member 5 2 2
MIRT712212 SCOC short coiled-coil protein 2 2
MIRT714742 SETBP1 SET binding protein 1 2 2
MIRT718268 ZNF749 zinc finger protein 749 2 2
MIRT720553 DYRK4 dual specificity tyrosine phosphorylation regulated kinase 4 2 2
MIRT722248 RBM41 RNA binding motif protein 41 2 2
MIRT723767 MPLKIP M-phase specific PLK1 interacting protein 2 2
MIRT723977 KIAA0146 scaffolding protein involved in DNA repair 1 1
miRNA-Drug Associations
miRNA Small Melocule FDA CID Detection Method Condition PMID Year Expression Pattern of miRNA
miR-4 Dexamethasone approved 5743 Microarray primary rat thymocytes 20847043 2010 up-regulated
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-4282 Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-4282 Neoadjuvant chemotherapy sensitive tissue (breast cancer)
hsa-miR-4282 Neoadjuvant chemotherapy sensitive tissue (breast cancer)

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