pre-miRNA Information
pre-miRNA hsa-mir-4433a   
Genomic Coordinates chr2: 64340759 - 64340839
Description Homo sapiens miR-4433a stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-4433a-3p
Sequence 51| ACAGGAGUGGGGGUGGGACAU |71
Evidence Experimental
Experiments Illumina
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs751480515 9 dbSNP
rs557760377 15 dbSNP
rs1479580865 20 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol BROX   
Synonyms C1orf58
Description BRO1 domain and CAAX motif containing
Transcript NM_144695   
Expression
Putative miRNA Targets on BROX
3'UTR of BROX
(miRNA target sites are highlighted)
>BROX|NM_144695|3'UTR
   1 AATACAACTTGCACTTAGAATTTCTCTAGCAGTAAATAAGATAAACCACAGAATTTCAGTTCTTATTTCTCAAAATGATT
  81 TCTCTGAAGCTTGTAGAATAACTATTATATTCAGAGGGTTATCTGCCTTCAGCTTACTTGTTCTTAATTTTTAATACAGC
 161 GGAGATGTTTCTTGCTTTGTTTTCAGACTCTCCTTTTTAATCAGGACAACATTTGAAAGATTTTATTGTGCCTCTAAAGG
 241 GTATATTTGGGGGTTGGGTCTTTTTGTTAAACTCTGGATAGTAATAAGTTTCAGGTCAGTATAGGCCCGAATCATGTGGT
 321 TTCAGGTATGTTTTTCTTTTTTCTTTTTCTTTTTTTTTTTTCTTTTTTTTTTTTTTTTTTTTTGAGGTGGAGTCTCCCTC
 401 TGTTGCCCAGGCTGGAGTGCAGTGGCATGATCTCGGCTCACTGCAACCCTCCACCTCCTGAATTAAAGTGATTCTCCTGC
 481 CTCAGCCTCCCGAGTAGCTGGGATTACAGGCACGCACCACTACACCCAGATAATTTTTGTATTTTTAGTAGAGACGTGAT
 561 TTCACCATGTTGGCCAGGCTGGTCTCGAACTCCTGACCTCAGCTGATCTGCCCGCCTTGGCCTCCCAAAGTGCTGGGATT
 641 ACAGGCGTGATCCACTGCACCTGGCCTCAGGTATGTTTTTCTATCTACACACAAAAAGTTTATTTTCCTTCCTCTTATTT
 721 GATATCAGAAGAATGACAGGAATCAGTTTTTAACAGAGATAGTTTTTCCGTTTCTCCATTGTGTTAATCAGAGCGCAGAC
 801 TTACATTCTCAGTCATTTATCTTTTCTGGTGGAGAATAAAAAGTCACTTATAGTTAAAGATCAGAAAATTATCACACCAA
 881 ATCCATTACATATGTTAGAATCAATAATTTACTCAAAAATCAGCTTTTATAGGTATGTTGGCACCTTATCCAAGAACTTA
 961 TCCCTGTTCCAGTACCCCTGTGCTTCATTCAGTATCAGTAACCCTGCAATGATTTTTACAAATATCTTTTTCTAGTGGGT
1041 TTTTTACTTAGAGGAAAGAACTTTGTAATAGCTCTTAATGTTTATATATAAGAGAAGACAGAATGGAAAATGTTTTTTGA
1121 AGTCAAATATTGCATGATGTAAAGAAAAAACTTTAAACTTAAATGAGTAGGTTGTCCTGAATTACACTGGTAACTCTCTA
1201 CTTCTTTATTAAAGAAGTTATAGTAAGATGCCTTTGTTACCTGATTTCAGTGTACATTGTTTTTATGTGGTTTTCTGATA
1281 ATGTCCTGTCAGAATTGTATTGGTTTAGGCCAAAGGCCATAGCAAAAACATAGAGAACAAATATGATCTTAAAAATAGAT
1361 TGTAACATTTTAAACAATTAGTTTAGTAATTTGGGAAATAGTGGATGCATAATACTTTAACAGAAGTCACACATCTGTAG
1441 GTTTATCTTTTGATTATTCTCCTGAGGCATTAGATAGTTTTTCTATTATAAGTGACAGATTGACTCACTTAATATAAATA
1521 AGTAGCATACACTAAAAGCTTACTATGTGCCAGATACTGTGCTGGACACTTACATAGATAAGCCATTGAATCCACACAGC
1601 AGCCCTGTAAGAAATAAGTAAAATCTGCATAAAGTGTTGAAATAGGAATATACATTTCATTATGAAAAATGAATAGATTA
1681 TGCCTATCTGAATCAATATTGCATTCAAATAAGTGATTACTTAAATCATATATCATAGTTTACACTCCTTAAAAAAAGGT
1761 ACATAAATTCAGTGAGGTTTTTTTCTTAACATACAGAAGTACTAAATACTGCTTGCAGTATAATATTGATATTGGAAGCT
1841 GCAGTTTCCAGAATAAGTGGAGTAATAACTAAACAGACATTTAATTTTATTTCAATATCTATGGAAAAAACACTTATTAA
1921 ATCTCCCTGTATTTTATGTTGTCTTTATTACAGAATCACTTGTCTGTTTGTTGTGTGCCACTTACTGACAAAACTTTAAA
2001 CAGTACTTGATGCCAGCTCTCTACTCTGTGGCTGTGGGACCTGTTTCTTTTAGGTACTTGTGCTTATTAATCTACTTACT
2081 AAATTTTCACATTGACATTTTTGGGGATGATACTACCATATACGAAATGGAAAATGTAATATGCTCAGTGCTTCTGTAAA
2161 ATGCAGCAATACTGGTATTACTTTACATCAGTAGGCATCTTTGACATGAGCATATAAATATTTTGTTGACTCAGCAAAGG
2241 TGACACTTTGTGACTAAAGTATCCCATTATATATAATGTTTTTTGAAATGTTGGAAATTTTGGGGAATTATCAAATGTAT
2321 AGAAGTTGCATGAAGGTTATAGAGAGGTGTAACTGTTTGTTAACTATTACATGGATTTCATACTAGGCAGTGACAACTAA
2401 CATGTTACTTCAACTAAAAGTGTATAATGGGTTGTCTTTTTATTTATGAAAATAAAAGTAATTTTACTTACAATTTCATT
2481 GA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' uaCAGGGUGGGG-GUGAGGACa 5'
            | |: ::|:|  ||||||| 
Target 5' caGGCTGGTCTCGAACTCCTGa 3'
575 - 596 147.00 -18.50
2
miRNA  3' uacAGGGUGGG-GGU-GAGGACa 5'
             | | |||| ||| |||||| 
Target 5' cacTGCAACCCTCCACCTCCTGa 3'
439 - 461 134.00 -20.20
3
miRNA  3' uacAGGGU-GGGGGUGAGGAca 5'
             || :| ::: |||||||  
Target 5' ataTCATAGTTTACACTCCTta 3'
1730 - 1751 130.00 -11.60
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN31484810 27 COSMIC
COSN30122843 47 COSMIC
COSN31578169 52 COSMIC
COSN1433290 105 COSMIC
COSN30105476 162 COSMIC
COSN7205413 307 COSMIC
COSN27279862 350 COSMIC
COSN8435322 552 COSMIC
COSN17726000 701 COSMIC
COSN23347935 706 COSMIC
COSN17317737 781 COSMIC
COSN6024668 1056 COSMIC
COSN16933278 1083 COSMIC
COSN1098498 1410 COSMIC
COSN7205415 1413 COSMIC
COSN17913118 2068 COSMIC
COSN5166538 2095 COSMIC
COSN21526687 2354 COSMIC
COSN22885807 2359 COSMIC
COSN30353018 2428 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs991300043 3 dbSNP
rs1181677260 6 dbSNP
rs1362449064 8 dbSNP
rs770846086 14 dbSNP
rs776603337 19 dbSNP
rs373931794 22 dbSNP
rs761459323 22 dbSNP
rs759292345 25 dbSNP
rs112469321 26 dbSNP
rs1215134893 32 dbSNP
rs1459995980 33 dbSNP
rs199674355 39 dbSNP
rs1299945469 52 dbSNP
rs183063133 57 dbSNP
rs377331553 60 dbSNP
rs558623443 67 dbSNP
rs1021970446 75 dbSNP
rs917216982 75 dbSNP
rs1207996858 76 dbSNP
rs574545249 83 dbSNP
rs968659907 86 dbSNP
rs977532942 90 dbSNP
rs1227263104 103 dbSNP
rs778371692 105 dbSNP
rs1294781235 114 dbSNP
rs769787681 118 dbSNP
rs1380415492 119 dbSNP
rs987231164 126 dbSNP
rs910277599 132 dbSNP
rs542338907 139 dbSNP
rs1223048865 142 dbSNP
rs930461067 161 dbSNP
rs1409794559 162 dbSNP
rs1047630095 163 dbSNP
rs1424591437 169 dbSNP
rs749708967 193 dbSNP
rs1039839019 195 dbSNP
rs898776376 208 dbSNP
rs563617270 211 dbSNP
rs931579061 212 dbSNP
rs368882953 217 dbSNP
rs1207991000 222 dbSNP
rs1326487326 231 dbSNP
rs1009252243 235 dbSNP
rs531001262 237 dbSNP
rs12043288 239 dbSNP
rs1394670032 248 dbSNP
rs1057150054 268 dbSNP
rs74943767 277 dbSNP
rs1321840787 281 dbSNP
rs1480567039 304 dbSNP
rs1197637579 306 dbSNP
rs77420252 309 dbSNP
rs1021457671 310 dbSNP
rs969061375 315 dbSNP
rs967807890 316 dbSNP
rs998767144 320 dbSNP
rs1430121396 325 dbSNP
rs1248360172 326 dbSNP
rs1031562946 327 dbSNP
rs1463467693 329 dbSNP
rs1417704549 331 dbSNP
rs954377064 331 dbSNP
rs1304717766 337 dbSNP
rs796252390 337 dbSNP
rs1365905757 340 dbSNP
rs987093903 340 dbSNP
rs1263316140 342 dbSNP
rs1229103978 343 dbSNP
rs372700180 343 dbSNP
rs1298763900 344 dbSNP
rs369101624 344 dbSNP
rs1386432387 346 dbSNP
rs1228362405 350 dbSNP
rs1390058757 350 dbSNP
rs1491486733 350 dbSNP
rs372818118 350 dbSNP
rs796814438 350 dbSNP
rs1491319826 351 dbSNP
rs1299419414 352 dbSNP
rs1463702203 353 dbSNP
rs1337635728 354 dbSNP
rs1410429216 356 dbSNP
rs1239820352 357 dbSNP
rs1447648977 357 dbSNP
rs1279553325 359 dbSNP
rs1352126684 360 dbSNP
rs1225292816 361 dbSNP
rs1396830221 361 dbSNP
rs868117877 362 dbSNP
rs1204871063 363 dbSNP
rs1275881047 363 dbSNP
rs1340407236 363 dbSNP
rs1450568308 363 dbSNP
rs200745349 363 dbSNP
rs550811790 363 dbSNP
rs1292965511 365 dbSNP
rs1234547059 367 dbSNP
rs1490276945 368 dbSNP
rs1032282296 369 dbSNP
rs1264802417 370 dbSNP
rs1159251965 371 dbSNP
rs1307592223 373 dbSNP
rs1427588501 374 dbSNP
rs1181901929 375 dbSNP
rs1379678670 376 dbSNP
rs1437768260 377 dbSNP
rs1165325121 380 dbSNP
rs1385672519 382 dbSNP
rs201432516 384 dbSNP
rs1456007543 385 dbSNP
rs1292041816 386 dbSNP
rs1398898650 387 dbSNP
rs1392090562 388 dbSNP
rs1183347726 389 dbSNP
rs1472747283 391 dbSNP
rs1250629935 395 dbSNP
rs1179483833 399 dbSNP
rs1330774898 401 dbSNP
rs1201571499 402 dbSNP
rs1344920217 416 dbSNP
rs1374672345 420 dbSNP
rs1230325148 435 dbSNP
rs149847057 436 dbSNP
rs956252711 444 dbSNP
rs1316284304 447 dbSNP
rs1342091617 461 dbSNP
rs562756493 466 dbSNP
rs1413900964 468 dbSNP
rs1399962242 474 dbSNP
rs1160168924 477 dbSNP
rs1457313536 490 dbSNP
rs964485463 492 dbSNP
rs1179633066 493 dbSNP
rs976025403 498 dbSNP
rs920093440 499 dbSNP
rs931445050 509 dbSNP
rs776202187 514 dbSNP
rs529449596 515 dbSNP
rs1442149208 521 dbSNP
rs970008200 525 dbSNP
rs980138683 527 dbSNP
rs1047322136 533 dbSNP
rs551118190 547 dbSNP
rs920670063 550 dbSNP
rs144691720 552 dbSNP
rs908760111 556 dbSNP
rs759215918 557 dbSNP
rs199864686 561 dbSNP
rs930743993 561 dbSNP
rs1237040138 564 dbSNP
rs1447030170 568 dbSNP
rs1047576913 569 dbSNP
rs907676672 576 dbSNP
rs1435696719 578 dbSNP
rs1185373580 580 dbSNP
rs938694256 587 dbSNP
rs569673315 588 dbSNP
rs867052447 592 dbSNP
rs1057054356 595 dbSNP
rs1414088459 595 dbSNP
rs766952319 601 dbSNP
rs1472695392 609 dbSNP
rs1367040165 614 dbSNP
rs1043404502 620 dbSNP
rs28433094 631 dbSNP
rs537095733 645 dbSNP
rs1043308004 646 dbSNP
rs904366898 647 dbSNP
rs999210585 648 dbSNP
rs1182247352 651 dbSNP
rs998664248 656 dbSNP
rs1354019894 660 dbSNP
rs370507125 665 dbSNP
rs1299508528 669 dbSNP
rs1229138875 672 dbSNP
rs1031594115 684 dbSNP
rs1318396516 686 dbSNP
rs954575867 694 dbSNP
rs1008601344 696 dbSNP
rs1338006767 707 dbSNP
rs1322504966 708 dbSNP
rs1379077503 713 dbSNP
rs1403218944 715 dbSNP
rs1394713270 723 dbSNP
rs1383817406 726 dbSNP
rs373627654 735 dbSNP
rs1450698730 741 dbSNP
rs150472185 755 dbSNP
rs370361841 755 dbSNP
rs1308385418 760 dbSNP
rs752189472 764 dbSNP
rs761344478 770 dbSNP
rs1256979189 771 dbSNP
rs970332141 775 dbSNP
rs531564864 777 dbSNP
rs964841204 779 dbSNP
rs973190889 789 dbSNP
rs762342610 790 dbSNP
rs1315583347 792 dbSNP
rs980086407 792 dbSNP
rs577055605 795 dbSNP
rs1220831490 796 dbSNP
rs1243733276 796 dbSNP
rs1367758609 815 dbSNP
rs1482891503 825 dbSNP
rs982881379 830 dbSNP
rs1174209896 835 dbSNP
rs534964862 841 dbSNP
rs144908838 846 dbSNP
rs1057086593 848 dbSNP
rs944496833 848 dbSNP
rs758804085 851 dbSNP
rs535904523 852 dbSNP
rs1426045090 857 dbSNP
rs780464102 863 dbSNP
rs921841967 864 dbSNP
rs1471036412 871 dbSNP
rs1183119787 878 dbSNP
rs574612184 882 dbSNP
rs1272188664 886 dbSNP
rs1212197825 889 dbSNP
rs948698466 891 dbSNP
rs370031057 905 dbSNP
rs1277368902 915 dbSNP
rs564614030 921 dbSNP
rs1216978297 930 dbSNP
rs1351725373 932 dbSNP
rs1043163583 937 dbSNP
rs1288621058 939 dbSNP
rs1408787237 945 dbSNP
rs1043645412 954 dbSNP
rs1358590403 958 dbSNP
rs375390760 959 dbSNP
rs903501662 962 dbSNP
rs999157426 967 dbSNP
rs1464988340 976 dbSNP
rs1052576940 979 dbSNP
rs896276669 991 dbSNP
rs76782851 992 dbSNP
rs1248230101 997 dbSNP
rs906095420 998 dbSNP
rs934488120 1001 dbSNP
rs1399763137 1010 dbSNP
rs1001763014 1012 dbSNP
rs1277226955 1021 dbSNP
rs1268182318 1025 dbSNP
rs1227443213 1026 dbSNP
rs1326625099 1027 dbSNP
rs1027920549 1035 dbSNP
rs1398163019 1039 dbSNP
rs376200156 1040 dbSNP
rs1380301336 1048 dbSNP
rs1224904938 1050 dbSNP
rs557094497 1066 dbSNP
rs1278715840 1069 dbSNP
rs575340449 1070 dbSNP
rs1390981347 1071 dbSNP
rs149032890 1088 dbSNP
rs1321289586 1089 dbSNP
rs1456965271 1092 dbSNP
rs1362290690 1098 dbSNP
rs755170105 1099 dbSNP
rs951991045 1109 dbSNP
rs1424208209 1113 dbSNP
rs983472717 1125 dbSNP
rs1015419026 1135 dbSNP
rs890416138 1138 dbSNP
rs1248170623 1140 dbSNP
rs966185878 1144 dbSNP
rs1008801004 1151 dbSNP
rs976306186 1155 dbSNP
rs1245008767 1161 dbSNP
rs1266876124 1161 dbSNP
rs1322753244 1164 dbSNP
rs1312421653 1186 dbSNP
rs1244510869 1188 dbSNP
rs1367951964 1191 dbSNP
rs1395639364 1192 dbSNP
rs1017909614 1201 dbSNP
rs1434466545 1201 dbSNP
rs921747717 1208 dbSNP
rs900184240 1219 dbSNP
rs931831782 1222 dbSNP
rs979285260 1224 dbSNP
rs925207412 1225 dbSNP
rs994873195 1226 dbSNP
rs1261377461 1228 dbSNP
rs1451036442 1230 dbSNP
rs1027415169 1232 dbSNP
rs1390717391 1239 dbSNP
rs1187808318 1249 dbSNP
rs1426243552 1254 dbSNP
rs1481549589 1269 dbSNP
rs1200325172 1271 dbSNP
rs950513586 1283 dbSNP
rs781135963 1289 dbSNP
rs1487954058 1297 dbSNP
rs564184215 1304 dbSNP
rs1291576085 1306 dbSNP
rs1431467030 1320 dbSNP
rs748194201 1324 dbSNP
rs533277922 1329 dbSNP
rs916122895 1331 dbSNP
rs370873910 1332 dbSNP
rs1324809791 1334 dbSNP
rs979135549 1338 dbSNP
rs1303458810 1340 dbSNP
rs1387628975 1352 dbSNP
rs1367186387 1362 dbSNP
rs1367769728 1364 dbSNP
rs1301455722 1371 dbSNP
rs926091928 1373 dbSNP
rs1370888450 1376 dbSNP
rs1406419778 1376 dbSNP
rs1167940540 1384 dbSNP
rs1275024746 1400 dbSNP
rs1366349793 1406 dbSNP
rs1216937802 1424 dbSNP
rs777903254 1429 dbSNP
rs1001710497 1435 dbSNP
rs1309141302 1442 dbSNP
rs1432029242 1449 dbSNP
rs1354312730 1451 dbSNP
rs1183840691 1459 dbSNP
rs1215735752 1459 dbSNP
rs934729727 1462 dbSNP
rs1484252595 1465 dbSNP
rs547041632 1471 dbSNP
rs1195770692 1472 dbSNP
rs1338013426 1478 dbSNP
rs1490768082 1486 dbSNP
rs1257893073 1490 dbSNP
rs1234062812 1509 dbSNP
rs1322864611 1511 dbSNP
rs547618745 1516 dbSNP
rs1281642141 1530 dbSNP
rs1027868281 1532 dbSNP
rs1350928533 1535 dbSNP
rs75081222 1539 dbSNP
rs890280238 1546 dbSNP
rs1005282918 1548 dbSNP
rs944499286 1558 dbSNP
rs1404280065 1566 dbSNP
rs1014952442 1567 dbSNP
rs1246325564 1573 dbSNP
rs1487570814 1578 dbSNP
rs966461068 1584 dbSNP
rs1038953802 1594 dbSNP
rs900384413 1595 dbSNP
rs1472695689 1604 dbSNP
rs1253070733 1609 dbSNP
rs1181519275 1624 dbSNP
rs1436365503 1626 dbSNP
rs1029043314 1641 dbSNP
rs1391549750 1649 dbSNP
rs1258916528 1654 dbSNP
rs796237782 1656 dbSNP
rs1322985541 1681 dbSNP
rs1261305428 1685 dbSNP
rs994548002 1693 dbSNP
rs1230542053 1698 dbSNP
rs1027733171 1702 dbSNP
rs1279131768 1710 dbSNP
rs1236611949 1713 dbSNP
rs1380932263 1714 dbSNP
rs1334768178 1723 dbSNP
rs1451796372 1729 dbSNP
rs143706441 1730 dbSNP
rs1157336177 1736 dbSNP
rs1387492307 1741 dbSNP
rs1457496928 1744 dbSNP
rs1425663943 1745 dbSNP
rs1410789987 1750 dbSNP
rs1156407529 1751 dbSNP
rs1468944864 1751 dbSNP
rs953178602 1755 dbSNP
rs979275158 1756 dbSNP
rs886214844 1759 dbSNP
rs1461258261 1760 dbSNP
rs200032897 1770 dbSNP
rs1210682052 1776 dbSNP
rs1465353202 1778 dbSNP
rs935291471 1785 dbSNP
rs1348935400 1791 dbSNP
rs1203567781 1793 dbSNP
rs1004579100 1794 dbSNP
rs770691516 1795 dbSNP
rs1284541907 1796 dbSNP
rs1245241743 1798 dbSNP
rs540556841 1806 dbSNP
rs1376910488 1826 dbSNP
rs548646547 1828 dbSNP
rs1344043475 1829 dbSNP
rs1239376312 1832 dbSNP
rs17532981 1849 dbSNP
rs1393414090 1851 dbSNP
rs1361395011 1853 dbSNP
rs1164183272 1854 dbSNP
rs759119609 1858 dbSNP
rs1383926537 1889 dbSNP
rs186724507 1895 dbSNP
rs1450195732 1899 dbSNP
rs1023222923 1902 dbSNP
rs1213968984 1913 dbSNP
rs115533158 1914 dbSNP
rs563057911 1918 dbSNP
rs1356923174 1928 dbSNP
rs1049290783 1932 dbSNP
rs925927444 1958 dbSNP
rs934760986 1960 dbSNP
rs1005155938 1965 dbSNP
rs778975948 1965 dbSNP
rs988913067 1972 dbSNP
rs1037037446 1983 dbSNP
rs751389309 1988 dbSNP
rs558013599 2001 dbSNP
rs1331338409 2027 dbSNP
rs1177367044 2029 dbSNP
rs1424455215 2033 dbSNP
rs530664313 2036 dbSNP
rs374742641 2045 dbSNP
rs901811622 2048 dbSNP
rs954657984 2048 dbSNP
rs190390948 2053 dbSNP
rs774885595 2056 dbSNP
rs114163358 2057 dbSNP
rs1184843154 2058 dbSNP
rs944531877 2064 dbSNP
rs143101764 2068 dbSNP
rs1163026844 2073 dbSNP
rs1489812384 2075 dbSNP
rs921912012 2082 dbSNP
rs1205866330 2089 dbSNP
rs1306832028 2115 dbSNP
rs1032160453 2124 dbSNP
rs146698601 2125 dbSNP
rs1345054838 2129 dbSNP
rs988046285 2139 dbSNP
rs752924089 2143 dbSNP
rs1048750514 2145 dbSNP
rs1172036651 2162 dbSNP
rs1402699706 2165 dbSNP
rs886121589 2176 dbSNP
rs1310238159 2178 dbSNP
rs747092056 2178 dbSNP
rs756236694 2178 dbSNP
rs1354481365 2185 dbSNP
rs1168872103 2192 dbSNP
rs1416272451 2193 dbSNP
rs1004479117 2194 dbSNP
rs554901438 2208 dbSNP
rs1176029413 2225 dbSNP
rs896205175 2226 dbSNP
rs1445378680 2240 dbSNP
rs1177582665 2241 dbSNP
rs372233473 2246 dbSNP
rs1014456845 2247 dbSNP
rs980471922 2250 dbSNP
rs1212085569 2252 dbSNP
rs546543102 2256 dbSNP
rs1023551178 2270 dbSNP
rs1221381554 2274 dbSNP
rs370086960 2282 dbSNP
rs1330760540 2296 dbSNP
rs931078293 2309 dbSNP
rs1349282958 2315 dbSNP
rs568287651 2316 dbSNP
rs763435923 2318 dbSNP
rs557937789 2323 dbSNP
rs909356521 2331 dbSNP
rs1450775743 2337 dbSNP
rs556890075 2339 dbSNP
rs1033234068 2347 dbSNP
rs751883482 2350 dbSNP
rs988777360 2353 dbSNP
rs1468242452 2354 dbSNP
rs769678858 2354 dbSNP
rs1160047893 2356 dbSNP
rs1405499987 2360 dbSNP
rs1317416536 2367 dbSNP
rs1196825087 2372 dbSNP
rs1265602447 2375 dbSNP
rs17163466 2391 dbSNP
rs1187378624 2395 dbSNP
rs1465809302 2402 dbSNP
rs1236119003 2403 dbSNP
rs1214572116 2413 dbSNP
rs1476566940 2417 dbSNP
rs966116813 2421 dbSNP
rs987811209 2422 dbSNP
rs1230587577 2425 dbSNP
rs1384198008 2433 dbSNP
rs1036578610 2437 dbSNP
rs1195465846 2437 dbSNP
rs867713138 2438 dbSNP
rs1390859724 2447 dbSNP
rs1289715919 2453 dbSNP
rs1423861403 2453 dbSNP
rs1464710666 2467 dbSNP
rs1167904984 2470 dbSNP
rs767726218 2472 dbSNP
rs1403631585 2474 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HEK293S
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in GSM1084040. RNA binding protein: AGO2. Condition:CLIP_noarsenite_rep1 HITS-CLIP data was present in GSM1084064. RNA binding protein: AGO2. Condition:CLIP_noemetine_AbnovaAb HITS-CLIP data was present in GSM1084079. RNA binding protein: AGO2. Condition:CLIP_hippuristanol_rep2_AbnovaAb ...

- Karginov FV; Hannon GJ, 2013, Genes & development.

Article - Karginov FV; Hannon GJ
- Genes & development, 2013
When adapting to environmental stress, cells attenuate and reprogram their translational output. In part, these altered translation profiles are established through changes in the interactions between RNA-binding proteins and mRNAs. The Argonaute 2 (Ago2)/microRNA (miRNA) machinery has been shown to participate in stress-induced translational up-regulation of a particular mRNA, CAT-1; however, a detailed, transcriptome-wide understanding of the involvement of Ago2 in the process has been lacking. Here, we profiled the overall changes in Ago2-mRNA interactions upon arsenite stress by cross-linking immunoprecipitation (CLIP) followed by high-throughput sequencing (CLIP-seq). Ago2 displayed a significant remodeling of its transcript occupancy, with the majority of 3' untranslated region (UTR) and coding sequence (CDS) sites exhibiting stronger interaction. Interestingly, target sites that were destined for release from Ago2 upon stress were depleted in miRNA complementarity signatures, suggesting an alternative mode of interaction. To compare the changes in Ago2-binding patterns across transcripts with changes in their translational states, we measured mRNA profiles on ribosome/polysome gradients by RNA sequencing (RNA-seq). Increased Ago2 occupancy correlated with stronger repression of translation for those mRNAs, as evidenced by a shift toward lighter gradient fractions upon stress, while release of Ago2 was associated with the limited number of transcripts that remained translated. Taken together, these data point to a role for Ago2 and the mammalian miRNAs in mediating the translational component of the stress response.
LinkOut: [PMID: 23824327]
CLIP-seq Support 1 for dataset GSM1084040
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_noarsenite_rep1
Location of target site ENST00000537020.1 | 3UTR | AAUUAAAGUGAUUCUCCUGCCUCAGCCUCCCGAGUAGCUG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM1084064
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_noemetine_AbnovaAb
Location of target site ENST00000537020.1 | 3UTR | AAUUAAAGUGAUUCUCCUGCCUCAGCCUCCCGAGUA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
CLIP-seq Support 3 for dataset GSM1084079
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_hippuristanol_rep2_AbnovaAb
Location of target site ENST00000537020.1 | 3UTR | AAUUAAAGUGAUUCUCCUGCCUCAGC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
256 hsa-miR-4433a-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT088097 SEPT2 septin 2 2 2
MIRT143134 MGRN1 mahogunin ring finger 1 2 2
MIRT153912 NCOA3 nuclear receptor coactivator 3 2 2
MIRT154894 GNAS GNAS complex locus 2 4
MIRT200996 ZNF805 zinc finger protein 805 2 2
MIRT215729 C5ORF51 chromosome 5 open reading frame 51 2 10
MIRT235593 POFUT1 protein O-fucosyltransferase 1 2 2
MIRT263250 SGPL1 sphingosine-1-phosphate lyase 1 2 2
MIRT317951 CDC5L cell division cycle 5 like 2 4
MIRT325572 HIATL1 major facilitator superfamily domain containing 14B 2 4
MIRT354739 LSM3 LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated 2 2
MIRT444552 UBE2D3 ubiquitin conjugating enzyme E2 D3 2 4
MIRT446978 SUSD5 sushi domain containing 5 2 2
MIRT451036 ZNF610 zinc finger protein 610 2 2
MIRT451596 TRPM7 transient receptor potential cation channel subfamily M member 7 2 2
MIRT452025 NLRP6 NLR family pyrin domain containing 6 2 2
MIRT452594 CA6 carbonic anhydrase 6 2 2
MIRT452768 TCEA3 transcription elongation factor A3 2 4
MIRT452959 ZNF844 zinc finger protein 844 2 2
MIRT453191 ACSF2 acyl-CoA synthetase family member 2 2 2
MIRT453382 RHD Rh blood group D antigen 2 2
MIRT453685 CEBPD CCAAT/enhancer binding protein delta 2 2
MIRT455272 DDX39B DExD-box helicase 39B 2 8
MIRT455346 BAMBI BMP and activin membrane bound inhibitor 2 2
MIRT456494 SERAC1 serine active site containing 1 2 2
MIRT456585 NID1 nidogen 1 2 2
MIRT456888 DDA1 DET1 and DDB1 associated 1 2 2
MIRT457123 APOLD1 apolipoprotein L domain containing 1 2 2
MIRT457852 ZNF324B zinc finger protein 324B 2 2
MIRT457987 APAF1 apoptotic peptidase activating factor 1 2 2
MIRT459278 APOBEC3F apolipoprotein B mRNA editing enzyme catalytic subunit 3F 2 2
MIRT459625 SLC25A33 solute carrier family 25 member 33 2 2
MIRT459715 SGK494 uncharacterized serine/threonine-protein kinase SgK494 2 2
MIRT460057 RPL22L1 ribosomal protein L22 like 1 2 2
MIRT460182 UNK unkempt family zinc finger 2 6
MIRT460288 PDE11A phosphodiesterase 11A 2 2
MIRT460841 EGF epidermal growth factor 2 4
MIRT460860 TBC1D19 TBC1 domain family member 19 2 2
MIRT461519 EMC7 ER membrane protein complex subunit 7 2 2
MIRT461729 SLC27A1 solute carrier family 27 member 1 2 4
MIRT461821 SNAP23 synaptosome associated protein 23 2 2
MIRT462066 CCDC77 coiled-coil domain containing 77 2 4
MIRT462084 MSANTD2 Myb/SANT DNA binding domain containing 2 2 2
MIRT462508 MTFMT mitochondrial methionyl-tRNA formyltransferase 2 10
MIRT464239 VCP valosin containing protein 2 2
MIRT465316 TRAF5 TNF receptor associated factor 5 2 2
MIRT466549 TBL1XR1 transducin beta like 1 X-linked receptor 1 2 2
MIRT467128 SRGAP1 SLIT-ROBO Rho GTPase activating protein 1 2 8
MIRT468091 SHCBP1 SHC binding and spindle associated 1 2 2
MIRT469630 RAD21 RAD21 cohesin complex component 2 6
MIRT471097 PIK3C2B phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 beta 2 2
MIRT472704 MYBL1 MYB proto-oncogene like 1 2 2
MIRT472830 MTMR10 myotubularin related protein 10 2 2
MIRT472872 MTHFD2 methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase 2 2
MIRT472895 MTDH metadherin 2 2
MIRT473728 MAPK1 mitogen-activated protein kinase 1 2 2
MIRT473859 MAP2K4 mitogen-activated protein kinase kinase 4 2 2
MIRT474047 LONRF1 LON peptidase N-terminal domain and ring finger 1 2 2
MIRT474297 LAMC1 laminin subunit gamma 1 2 2
MIRT474658 KLF13 Kruppel like factor 13 2 2
MIRT475234 IKZF3 IKAROS family zinc finger 3 2 2
MIRT475500 HSP90B1 heat shock protein 90 beta family member 1 2 2
MIRT475742 HERPUD1 homocysteine inducible ER protein with ubiquitin like domain 1 2 4
MIRT475793 HDGF heparin binding growth factor 2 2
MIRT477254 ERGIC2 ERGIC and golgi 2 2 2
MIRT478228 DDX52 DExD-box helicase 52 2 2
MIRT478393 DCTN5 dynactin subunit 5 2 2
MIRT478754 CS citrate synthase 2 2
MIRT478827 CRKL CRK like proto-oncogene, adaptor protein 2 4
MIRT480234 C9orf41 carnosine N-methyltransferase 1 2 2
MIRT480597 BTRC beta-transducin repeat containing E3 ubiquitin protein ligase 2 2
MIRT484121 C14orf142 GON7, KEOPS complex subunit homolog 2 2
MIRT484689 PACSIN1 protein kinase C and casein kinase substrate in neurons 1 2 2
MIRT486331 C11orf54 chromosome 11 open reading frame 54 2 4
MIRT488599 FAM3C family with sequence similarity 3 member C 2 8
MIRT488833 MRRF mitochondrial ribosome recycling factor 2 2
MIRT492523 RAB15 RAB15, member RAS oncogene family 2 4
MIRT493632 HIC2 HIC ZBTB transcriptional repressor 2 2 2
MIRT500026 ABCF2 ATP binding cassette subfamily F member 2 2 8
MIRT501075 SMAD7 SMAD family member 7 2 8
MIRT503094 BTG2 BTG anti-proliferation factor 2 2 4
MIRT503336 MMAB methylmalonic aciduria (cobalamin deficiency) cblB type 2 2
MIRT505465 STMN1 stathmin 1 2 4
MIRT505726 SERTAD3 SERTA domain containing 3 2 4
MIRT509333 MS4A4A membrane spanning 4-domains A4A 2 2
MIRT509978 KCNMB1 potassium calcium-activated channel subfamily M regulatory beta subunit 1 2 4
MIRT513068 CHST6 carbohydrate sulfotransferase 6 2 2
MIRT513446 EMP1 epithelial membrane protein 1 2 6
MIRT513736 PSD3 pleckstrin and Sec7 domain containing 3 2 4
MIRT513996 CENPQ centromere protein Q 2 4
MIRT516538 MIXL1 Mix paired-like homeobox 2 2
MIRT517606 SAV1 salvador family WW domain containing protein 1 2 2
MIRT518064 CEP89 centrosomal protein 89 2 2
MIRT518119 RNMTL1 mitochondrial rRNA methyltransferase 3 2 2
MIRT518325 WDR92 WD repeat domain 92 2 2
MIRT519048 ABCB11 ATP binding cassette subfamily B member 11 2 2
MIRT520972 SPPL2A signal peptide peptidase like 2A 2 4
MIRT521359 RPL35A ribosomal protein L35a 2 2
MIRT523359 GTF3C6 general transcription factor IIIC subunit 6 2 2
MIRT523801 FAM63A MINDY lysine 48 deubiquitinase 1 2 2
MIRT524622 C7orf73 short transmembrane mitochondrial protein 1 2 2
MIRT525550 PHB2 prohibitin 2 2 4
MIRT529709 ZBTB49 zinc finger and BTB domain containing 49 2 2
MIRT531605 PLEKHA6 pleckstrin homology domain containing A6 2 2
MIRT532387 UMPS uridine monophosphate synthetase 2 2
MIRT534468 SCD stearoyl-CoA desaturase 2 4
MIRT537546 ETNK1 ethanolamine kinase 1 2 2
MIRT541619 C11orf31 selenoprotein H 2 2
MIRT548380 ENPP5 ectonucleotide pyrophosphatase/phosphodiesterase 5 (putative) 2 4
MIRT549523 HDDC2 HD domain containing 2 2 2
MIRT549774 SOD2 superoxide dismutase 2 2 2
MIRT550578 SLC2A5 solute carrier family 2 member 5 2 2
MIRT551498 CENPN centromere protein N 2 4
MIRT552301 ITGA3 integrin subunit alpha 3 2 2
MIRT555400 PPM1L protein phosphatase, Mg2+/Mn2+ dependent 1L 2 2
MIRT556399 LUC7L LUC7 like 2 2
MIRT557047 HOXB3 homeobox B3 2 2
MIRT558072 ERO1L endoplasmic reticulum oxidoreductase 1 alpha 1 2
MIRT559659 AHCYL2 adenosylhomocysteinase like 2 2 2
MIRT561239 ZNF354B zinc finger protein 354B 2 2
MIRT566899 LRIG2 leucine rich repeats and immunoglobulin like domains 2 2 2
MIRT568786 FAM120B family with sequence similarity 120B 2 2
MIRT574014 MRPL12 mitochondrial ribosomal protein L12 2 2
MIRT574885 Dnajc6 DnaJ heat shock protein family (Hsp40) member C6 2 2
MIRT575243 Serping1 serine (or cysteine) peptidase inhibitor, clade G, member 1 2 2
MIRT576194 Vsig2 V-set and immunoglobulin domain containing 2 2 2
MIRT576309 Acbd7 acyl-Coenzyme A binding domain containing 7 2 2
MIRT576484 Lhx4 LIM homeobox protein 4 2 3
MIRT576646 Mill2 MHC I like leukocyte 2 1 1
MIRT576708 Kras Kirsten rat sarcoma viral oncogene homolog 2 2
MIRT576855 Socs6 suppressor of cytokine signaling 6 2 2
MIRT576950 Aldoa aldolase A, fructose-bisphosphate 2 2
MIRT617133 ZNF556 zinc finger protein 556 2 4
MIRT617928 ZNF783 zinc finger family member 783 2 2
MIRT618981 MRPS16 mitochondrial ribosomal protein S16 2 2
MIRT621100 SIX3 SIX homeobox 3 2 2
MIRT624537 BROX BRO1 domain and CAAX motif containing 2 2
MIRT625663 C2orf48 chromosome 2 open reading frame 48 2 2
MIRT627059 DCTN6 dynactin subunit 6 2 2
MIRT628319 CLPB ClpB homolog, mitochondrial AAA ATPase chaperonin 2 2
MIRT630859 ENTPD5 ectonucleoside triphosphate diphosphohydrolase 5 2 2
MIRT632295 TMEM65 transmembrane protein 65 2 2
MIRT634115 ZNF207 zinc finger protein 207 2 2
MIRT634736 CYP20A1 cytochrome P450 family 20 subfamily A member 1 2 2
MIRT635655 NDST3 N-deacetylase and N-sulfotransferase 3 2 2
MIRT635772 PDCL3 phosducin like 3 2 2
MIRT635911 LILRA2 leukocyte immunoglobulin like receptor A2 2 2
MIRT636365 OGFRL1 opioid growth factor receptor like 1 2 4
MIRT637251 GLRX2 glutaredoxin 2 2 2
MIRT638705 FZD4 frizzled class receptor 4 2 2
MIRT639640 PREX2 phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 2 2 2
MIRT639676 PPEF2 protein phosphatase with EF-hand domain 2 2 4
MIRT642267 SMIM17 small integral membrane protein 17 2 2
MIRT642372 ZNF581 zinc finger protein 581 2 2
MIRT643545 SLC25A17 solute carrier family 25 member 17 2 2
MIRT647994 PDE12 phosphodiesterase 12 2 2
MIRT649094 NOM1 nucleolar protein with MIF4G domain 1 2 2
MIRT650993 ZNF770 zinc finger protein 770 2 2
MIRT651956 UBE2N ubiquitin conjugating enzyme E2 N 2 2
MIRT652977 SUN2 Sad1 and UNC84 domain containing 2 2 2
MIRT654389 RBM12B RNA binding motif protein 12B 2 2
MIRT655637 OLFML2A olfactomedin like 2A 2 2
MIRT655729 NRXN3 neurexin 3 2 2
MIRT658171 FCHSD1 FCH and double SH3 domains 1 2 2
MIRT660937 ACOX1 acyl-CoA oxidase 1 2 2
MIRT662112 CERKL ceramide kinase like 2 2
MIRT662302 MPV17L MPV17 mitochondrial inner membrane protein like 2 2
MIRT662993 TMEM59 transmembrane protein 59 2 2
MIRT663071 SFR1 SWI5 dependent homologous recombination repair protein 1 2 2
MIRT663704 ABHD17B abhydrolase domain containing 17B 2 2
MIRT663864 MUC20 mucin 20, cell surface associated 2 2
MIRT665185 HAUS5 HAUS augmin like complex subunit 5 2 4
MIRT665402 WEE1 WEE1 G2 checkpoint kinase 2 2
MIRT665688 TNPO3 transportin 3 2 2
MIRT665795 TMEM170A transmembrane protein 170A 2 2
MIRT665847 TIAL1 TIA1 cytotoxic granule associated RNA binding protein like 1 2 2
MIRT666999 PDPN podoplanin 2 2
MIRT667598 LIPC lipase C, hepatic type 2 2
MIRT668576 ELMSAN1 ELM2 and Myb/SANT domain containing 1 2 4
MIRT670960 UGGT1 UDP-glucose glycoprotein glucosyltransferase 1 2 2
MIRT671187 ZNF891 zinc finger protein 891 2 2
MIRT671739 ZNF451 zinc finger protein 451 2 2
MIRT672745 ZNF585B zinc finger protein 585B 2 4
MIRT673446 ZNF583 zinc finger protein 583 2 2
MIRT679843 GPR75 G protein-coupled receptor 75 2 2
MIRT680556 ZNF584 zinc finger protein 584 2 2
MIRT680661 C1orf210 chromosome 1 open reading frame 210 2 2
MIRT681285 RFC2 replication factor C subunit 2 2 2
MIRT683264 ZNF329 zinc finger protein 329 2 2
MIRT684519 C1orf174 chromosome 1 open reading frame 174 2 2
MIRT685065 GEMIN4 gem nuclear organelle associated protein 4 2 2
MIRT685157 DTWD2 DTW domain containing 2 2 2
MIRT685168 ERCC1 ERCC excision repair 1, endonuclease non-catalytic subunit 2 2
MIRT685470 CACNG8 calcium voltage-gated channel auxiliary subunit gamma 8 2 2
MIRT686001 NEK4 NIMA related kinase 4 2 2
MIRT687027 RNF24 ring finger protein 24 2 2
MIRT687543 MOB1B MOB kinase activator 1B 2 2
MIRT687592 MANEAL mannosidase endo-alpha like 2 2
MIRT687753 KIAA1328 KIAA1328 2 2
MIRT688050 GLUL glutamate-ammonia ligase 2 2
MIRT688374 ENPP1 ectonucleotide pyrophosphatase/phosphodiesterase 1 2 2
MIRT688802 CBFA2T3 CBFA2/RUNX1 translocation partner 3 2 2
MIRT688957 ATXN3 ataxin 3 2 2
MIRT689281 C5AR2 complement component 5a receptor 2 2 2
MIRT689988 NNMT nicotinamide N-methyltransferase 2 2
MIRT689997 MMP17 matrix metallopeptidase 17 2 2
MIRT690014 LUZP2 leucine zipper protein 2 2 2
MIRT690161 ELP3 elongator acetyltransferase complex subunit 3 2 2
MIRT690379 ZSWIM7 zinc finger SWIM-type containing 7 2 2
MIRT690563 MICA MHC class I polypeptide-related sequence A 2 2
MIRT691891 EVC EvC ciliary complex subunit 1 2 2
MIRT693107 SCNM1 sodium channel modifier 1 2 2
MIRT693832 ZFP64 ZFP64 zinc finger protein 2 2
MIRT694105 ZNF446 zinc finger protein 446 2 2
MIRT694179 ZNF486 zinc finger protein 486 2 2
MIRT694475 LRTOMT leucine rich transmembrane and O-methyltransferase domain containing 2 2
MIRT694998 GGA2 golgi associated, gamma adaptin ear containing, ARF binding protein 2 2 2
MIRT695031 ALG10B ALG10B, alpha-1,2-glucosyltransferase 2 2
MIRT695163 TCTN2 tectonic family member 2 2 2
MIRT695525 SLC25A34 solute carrier family 25 member 34 2 2
MIRT696067 ZNF264 zinc finger protein 264 2 2
MIRT696616 CRIPT CXXC repeat containing interactor of PDZ3 domain 2 2
MIRT696661 AGXT2 alanine--glyoxylate aminotransferase 2 2 2
MIRT696705 PNPO pyridoxamine 5'-phosphate oxidase 2 2
MIRT697173 INMT indolethylamine N-methyltransferase 2 2
MIRT697303 ZNF652 zinc finger protein 652 2 2
MIRT697491 ZBTB8B zinc finger and BTB domain containing 8B 2 2
MIRT698657 TERF2 telomeric repeat binding factor 2 2 2
MIRT699042 SOAT1 sterol O-acyltransferase 1 2 2
MIRT699185 SLX4IP SLX4 interacting protein 2 2
MIRT699598 SHOC2 SHOC2, leucine rich repeat scaffold protein 2 2
MIRT700150 RNF115 ring finger protein 115 2 2
MIRT700720 PNO1 partner of NOB1 homolog 2 2
MIRT700870 PER2 period circadian clock 2 2 2
MIRT700912 PDXK pyridoxal kinase 2 2
MIRT701095 PAPOLG poly(A) polymerase gamma 2 2
MIRT701194 OTUD3 OTU deubiquitinase 3 2 2
MIRT702203 LPP LIM domain containing preferred translocation partner in lipoma 2 2
MIRT702272 LHX4 LIM homeobox 4 2 3
MIRT703125 GPRC5A G protein-coupled receptor class C group 5 member A 2 2
MIRT703252 GNS glucosamine (N-acetyl)-6-sulfatase 2 2
MIRT703262 GNL3L G protein nucleolar 3 like 2 2
MIRT703440 FYTTD1 forty-two-three domain containing 1 2 2
MIRT704321 DCUN1D5 defective in cullin neddylation 1 domain containing 5 2 2
MIRT704393 CTSS cathepsin S 2 2
MIRT704483 CPT1A carnitine palmitoyltransferase 1A 2 2
MIRT704880 CCSER2 coiled-coil serine rich protein 2 2 2
MIRT704926 CCDC36 coiled-coil domain containing 36 2 2
MIRT705175 BZW1 basic leucine zipper and W2 domains 1 2 2
MIRT706561 EIF2AK2 eukaryotic translation initiation factor 2 alpha kinase 2 2 2
MIRT707048 TRPV2 transient receptor potential cation channel subfamily V member 2 2 2
MIRT711497 PGD phosphogluconate dehydrogenase 2 2
MIRT716644 EPGN epithelial mitogen 2 2
MIRT720083 TNRC6B trinucleotide repeat containing 6B 2 2
MIRT722288 PMPCA peptidase, mitochondrial processing alpha subunit 2 2
MIRT725468 GRAP2 GRB2-related adaptor protein 2 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-4433a Dabrafenib 44462760 NSC764134 approved resistant cell line (A375)
hsa-mir-4433a Paclitaxel 36314 NSC125973 approved resistant cell line (W1)
hsa-mir-4433a Vincristine 5978 approved resistant cell line (W1)
hsa-mir-4433a Cisplatin 5460033 NSC119875 approved resistant cell line (BxPC3)
hsa-miR-4433a-3p Platinum 23939 sensitive High Ovarian Cancer tissue
hsa-miR-4433a-3p Imatinib 5291 NSC743414 approved sensitive High Gastrointestinal Stromal Tumor cell line (882R-NC, 882R-OE, 882R-KD)
hsa-miR-4433a-3p Cisplatin 5460033 NSC119875 approved resistant High Pancreatic Cancer cell line (BxPC-3)
hsa-miR-4433a-3p Paclitaxel 36314 NSC125973 approved resistant High Non-Small Cell Lung Cancer cell line (A549)
hsa-miR-4433a-3p Imatinib 5291 NSC743414 approved sensitive High Chronic Myelogenous Leukemia tissue
hsa-miR-4433a-3p Cisplatin 5460033 NSC119875 approved resistant High Ovarian Cancer cell line (A2780CIS)
hsa-miR-4433a-3p Cisplatin 5460033 NSC119875 approved sensitive cell line (CAL-27) (mitochondrial RNA)
hsa-miR-4433a-3p Paclitaxel 36314 NSC125973 approved resistant cell line (BAS)
hsa-miR-4433a-3p Cisplatin 5460033 NSC119875 approved resistant cell line (CP20)
hsa-miR-4433a-3p Cisplatin 5460033 NSC119875 approved resistant cell line (CIS)
hsa-miR-4433a-3p Neoadjuvant chemotherapy sensitive tissue (breast cancer)
hsa-miR-4433a-3p Gemcitabine 60750 NSC613327 approved sensitive cell line (PANC-1) (1500 ng/ml)
hsa-miR-4433a-3p Gemcitabine 60750 NSC613327 approved sensitive cell line (PANC-1) (100 ng/ml)

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