pre-miRNA Information
pre-miRNA hsa-mir-378g   
Genomic Coordinates chr1: 94745860 - 94745900
Description Homo sapiens miR-378g stem-loop
Comment None
RNA Secondary Structure
Associated Diseases

Mature miRNA Information
Mature miRNA hsa-miR-378g
Sequence 2| ACUGGGCUUGGAGUCAGAAG |21
Evidence Experimental
Experiments Illumina
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol BDP1   
Synonyms HSA238520, TAF3B1, TFC5, TFIIIB'', TFIIIB150, TFIIIB90, TFNR
Description B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB
Transcript NM_018429   
Expression
Putative miRNA Targets on BDP1
3'UTR of BDP1
(miRNA target sites are highlighted)
>BDP1|NM_018429|3'UTR
   1 AACAATCTTTTCTCTTTTTCTTTTTTAAATTAGGTCTAGGATTTCCAGAGTCAATTACATCAACAAAACAGTATTTAGAG
  81 CAAAATATCACTGTCTTATTTTTCTTTAGGTTGATTTTGAATACTTAATGAGCTTGATTTGAAGCTTTTATAATCAGTGG
 161 AAAACATTTCTGAGGTTCCTTTCATTCTGACTGATTCAGCATTTTGCAAATAGCAAGCAATTAAGACTGCTTTCTCAGAC
 241 AGAAATAACAACTCTTGTTTACATTTTGACTCTTCCTGTGCTAAGCACACATGGACATTTGGGAATGTTGTGGATATATG
 321 TCTCTGTATGAATTGCAGTGCAGACAGATTTGGGGGTTAATTGTATCATATTTAACATTTAGCAACTTCTTTTGTGAAGA
 401 TTTTTTATTTTTAGGGGGAGATGATGAAGGATGAAGGCTTTTTCATTTGCTTCTAAGTACAGTCATGTATCACATAATGA
 481 AGTTTAAGTCAATGATGGACCACATATATTACAGTGGTCCCATGCAATTAAAATGGAGATAAATTCCTATCAACTAGTGA
 561 CATTATAGCCATCATAACACAGTGCATTGCTTTTTTATGTTTAGATATGTTTAGATACACAAATACTTACTATTGTGTTA
 641 CAACTGCCTACAGTATTCAGCATAGTAACACATTGTAGAGGTTTGTAGCCGAGGAGCAATAGGCTATACCACATAGCCTC
 721 AGTCTGTACGGTGTGTAGCAGCCTGTACCATCTCAGTGTTTGTAAGTACACTCTGCGTTGTTTCACACAAGATCACCTAA
 801 CAAGGCAATTCTTAGAACATGTAGTTAAGGGACACGTGACTATATGTGAAAACAAATTGTCAAACTTCACTTTAGTATGG
 881 CAAATGTTAAAGAACTTTTCTATTATCAGCTGTTTGTCTGACTGAAAAATACATATTTTTCTAATTCATGGTGATGTAAC
 961 ATTAGTCCTAATTGAAAAACTAGTATTTAAACATAATTATTTATAAAGATGACACATCAAAGGGCTTATTTATTTTTAAA
1041 TTTTTTATTTAAAAGGATATTCAGTTTTAGCTATTTTTACCCCTCAGATTGTAGATAAAGAAGGCATTAAATTTATGTTT
1121 GTCTCCTTTTTCTGTTTAATTTTAAAGATATTTAAAATGATATAACTAAAAATGTTTAGCTGGTGTATATGTTTTGAATA
1201 CCTTTTTCCCCTCAGTTTAGTATATTGACTTTGTACTGTAAATTTTTCTGCTTTTCTTGGATAATCTCAGGATTTTCATG
1281 AGGATAGGGGGAACTCAACTTTATTTATGAGACAAAATTTCCATACAAAGCTCAATCTCCTTTATACACCCACAGACATA
1361 ATATTAGTTTTTAAAAAGCCAATTTCTTCATAGTTTTTTCCCATTAAATTCTCAAGGAACACTTGGATCTTTAAGCACGG
1441 AACATAATCATGATGTTAAAAACAGAGAAAATAAGGCTTTATAAAGTTAATGATTATCATCAGTATGAATTTAAGGTTTG
1521 TTTTAATTTCAAGATTTGATTTTTTATACGTGTAATTCTATTATCTACCCAAGCAGATCTGTAGTGGTTCCAATTAGACT
1601 TCTCAAACAGCAAATTTATCCTGATTTTATTTGAAAAGCCTCTTGGATTGATAGTATAGTAGCTCAGGCATTGGAAACTT
1681 TCTGCAAACTGTTTTGGGTTTGCAGGCCAGATGGTCTCTGTGGCAGCTACTCAGCTCTGCAATTTCAGTGTGAAAGAAGC
1761 CATAGACAGTACTTGAATGAAGGACTGTGGCTGGATTGGCCTTTTAGTTTGACCCCCTACATTAGGCCCCAAATTTTCTT
1841 ACCCTGAGGTGCTGATATCTGTATGGATGAGTTATTTGTCACTAAAGTTATGAGTTGTGCCTAAAAGTTAAAACTGTTGA
1921 CTGTATTATGTAATGATCAGTATTTCAGTTGGGAAGATATTTTAGAGTCTAGATAATTATGTTTGTATATTGAAAAAATG
2001 GTGGCCAGTTTTTAAGTTCCTTAATAGAAGAGAATTATGTCTCAGCACATATAACAGTAATGCTAATTTATTGAAACTAC
2081 TGCTGTTAGAGCACTTCTTATTCATTGTCTTTTAGTGAAATTTATGGCGTAACACTTTGTCAGAGAGGAGGCTATATAAT
2161 TCGGAGCGGAAATTGTCTATAAGTAGGCATTTATTTCATGATTGATATGTCACAGAAATCATGGTAGTAAATCACATTGC
2241 TATTTGAATACCCTGTTTTTGTAAGTTTTTAAAACTCATATTCTGAAAAGATTTCATTCTCTTAGTGTTAGCTTGGGAGT
2321 TAGATTGCCATGATTAAACTATTATTTATCCTTGTGTAATATTAGTTTTTAACTTTAACATCTGTTTCTTTTTAATCTAT
2401 AATGAGCTAGTTTTATGGAAAATGGAATTTCTTACTATATAAAGAATACAGAGACTCATTGTATTAGAGAATCAAGTCAG
2481 CCAGCTAAAGTATCCTACTGTTAAATCCTTAAACCTAATTTTGGAAAAGAGAAAGTTAATCAATGTATTTACCTTACATG
2561 TTGGAAAGAACTATGTTAGGTCTGATTCATGTGAAGAAGATGTTGCAAAGGATTTATTTCACAAATTTTAAAGGAGATAT
2641 GAGTAAAAGTTTTTATCTTTTCTTGACTTTTTCTCCTGAACACTTATGTCTTAGCAAGTGGTCAACATGAGGATTTGAAC
2721 GCCTAATTGTTGGTAAATGGTTGAGGCATGACAAAAATATTAATATCCACTGTTTACCATCATGTTATTTGAAACAAAAG
2801 TGACCATGTATACTATCTTGCTTGAAGAAGTCTTTGACAGAAAAAGCAATATCATGTCATTTATAAATTTTCTTGTTCTA
2881 AAGAAAGCAGTTATATATATATATAAATTATGTAAATAAAAGTTATTTTATATCATTAAAAAAAAAAAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' gaaGACUG--AGGU--UCGGGUCa 5'
             :|||:  | :|  |||:||| 
Target 5' ggaTTGATAGTATAGTAGCTCAGg 3'
1645 - 1668 129.00 -9.80
2
miRNA  3' gaAGACUGAGGUUCGGGUCa 5'
            |:|| :||:|||: ||| 
Target 5' caTTTGCTTCTAAGTACAGt 3'
444 - 463 122.00 -14.40
3
miRNA  3' gaAGACUGAGGU-UCGGGUCa 5'
            |:||: |::: || |||| 
Target 5' gtTTTGGGTTTGCAGGCCAGa 3'
1691 - 1711 122.00 -12.80
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN31568740 8 COSMIC
COSN30536234 13 COSMIC
COSN28752016 47 COSMIC
COSN28185277 55 COSMIC
COSN17037710 348 COSMIC
COSN31588626 383 COSMIC
COSN31607381 390 COSMIC
COSN505856 419 COSMIC
COSN20999777 427 COSMIC
COSN31778450 731 COSMIC
COSN30613246 1225 COSMIC
COSN31568441 1257 COSMIC
COSN31483077 1308 COSMIC
COSN28699335 1348 COSMIC
COSN31563850 1378 COSMIC
COSN15313835 1380 COSMIC
COSN31594657 1391 COSMIC
COSN31535232 1412 COSMIC
COSN16662779 1872 COSMIC
COSN7951954 1875 COSMIC
COSN5162144 1910 COSMIC
COSN7951955 1966 COSMIC
COSN6926092 1980 COSMIC
COSN7951956 2079 COSMIC
COSN28201697 2224 COSMIC
COSN8228764 2547 COSMIC
COSN22641419 2583 COSMIC
COSN31539304 2691 COSMIC
COSN7951957 2773 COSMIC
COSN31530585 2873 COSMIC
COSN31547469 2884 COSMIC
COSN28017186 2905 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs778909081 6 dbSNP
rs747654043 10 dbSNP
rs1386185408 11 dbSNP
rs1481044020 13 dbSNP
rs201063544 14 dbSNP
rs773017555 15 dbSNP
rs746616147 16 dbSNP
rs1177299432 17 dbSNP
rs771422191 21 dbSNP
rs1408771863 24 dbSNP
rs776802440 31 dbSNP
rs759930765 33 dbSNP
rs1391980737 34 dbSNP
rs1329531018 35 dbSNP
rs1411210860 37 dbSNP
rs1300926750 39 dbSNP
rs1344279112 41 dbSNP
rs1018493551 42 dbSNP
rs1404994753 46 dbSNP
rs372442379 51 dbSNP
rs1337366395 52 dbSNP
rs1425248043 55 dbSNP
rs574229159 64 dbSNP
rs1277721391 65 dbSNP
rs1208269293 66 dbSNP
rs376200331 72 dbSNP
rs956649080 80 dbSNP
rs1467495028 83 dbSNP
rs535348133 88 dbSNP
rs1268903647 91 dbSNP
rs1433560326 94 dbSNP
rs1025041314 96 dbSNP
rs969096388 99 dbSNP
rs980651979 123 dbSNP
rs879224672 127 dbSNP
rs745891898 129 dbSNP
rs1384192487 138 dbSNP
rs909134223 144 dbSNP
rs1174525717 150 dbSNP
rs1429145260 151 dbSNP
rs189847831 156 dbSNP
rs1417515365 157 dbSNP
rs1188186538 158 dbSNP
rs1475737267 164 dbSNP
rs1236838388 171 dbSNP
rs112968988 185 dbSNP
rs1185457328 185 dbSNP
rs1298950855 186 dbSNP
rs941968091 191 dbSNP
rs1204054828 195 dbSNP
rs1342598670 200 dbSNP
rs1221965366 202 dbSNP
rs552970901 212 dbSNP
rs919126800 213 dbSNP
rs930033447 218 dbSNP
rs1235915120 227 dbSNP
rs577735523 230 dbSNP
rs529741663 234 dbSNP
rs201448035 235 dbSNP
rs111387745 236 dbSNP
rs376833202 236 dbSNP
rs1313686119 245 dbSNP
rs779948078 255 dbSNP
rs1352831942 258 dbSNP
rs1172533800 270 dbSNP
rs1410615944 274 dbSNP
rs1412914941 293 dbSNP
rs1216704152 297 dbSNP
rs1162742759 304 dbSNP
rs1476046500 307 dbSNP
rs150674498 314 dbSNP
rs184530629 315 dbSNP
rs533766460 317 dbSNP
rs1001104770 318 dbSNP
rs367543934 319 dbSNP
rs1450563538 327 dbSNP
rs1269194544 334 dbSNP
rs1434638424 336 dbSNP
rs1232047014 344 dbSNP
rs189396880 356 dbSNP
rs1223579175 366 dbSNP
rs1371384210 371 dbSNP
rs892656583 372 dbSNP
rs1013725409 383 dbSNP
rs1363152721 384 dbSNP
rs1454299653 401 dbSNP
rs1159304266 403 dbSNP
rs1362579896 413 dbSNP
rs553261374 418 dbSNP
rs1418303252 421 dbSNP
rs1158021149 423 dbSNP
rs1417099825 426 dbSNP
rs575286433 438 dbSNP
rs1368585691 445 dbSNP
rs1388817190 446 dbSNP
rs1305402634 450 dbSNP
rs1316836645 451 dbSNP
rs1015970920 454 dbSNP
rs753647891 455 dbSNP
rs1470167020 458 dbSNP
rs963277799 461 dbSNP
rs1287504392 462 dbSNP
rs1356594694 466 dbSNP
rs971998541 470 dbSNP
rs144801352 493 dbSNP
rs1330288299 496 dbSNP
rs1301428293 500 dbSNP
rs933179921 501 dbSNP
rs560933700 503 dbSNP
rs528332817 504 dbSNP
rs912650641 509 dbSNP
rs1346792781 512 dbSNP
rs942826957 514 dbSNP
rs1039669127 520 dbSNP
rs1392879989 521 dbSNP
rs1249616263 550 dbSNP
rs546509014 554 dbSNP
rs778663023 555 dbSNP
rs903890716 556 dbSNP
rs745726413 557 dbSNP
rs1262928041 562 dbSNP
rs1485084259 562 dbSNP
rs1216766969 565 dbSNP
rs182089429 567 dbSNP
rs769041379 570 dbSNP
rs1052653103 572 dbSNP
rs892595712 575 dbSNP
rs1013758536 583 dbSNP
rs796848437 587 dbSNP
rs904935860 596 dbSNP
rs1373111019 608 dbSNP
rs1448025150 609 dbSNP
rs1433880779 616 dbSNP
rs1373187460 624 dbSNP
rs1001983708 625 dbSNP
rs1015920032 626 dbSNP
rs147519129 633 dbSNP
rs1427328282 641 dbSNP
rs372187313 644 dbSNP
rs139523946 649 dbSNP
rs551525132 651 dbSNP
rs1230994598 654 dbSNP
rs1194771346 674 dbSNP
rs1485563665 680 dbSNP
rs779728437 691 dbSNP
rs570130447 692 dbSNP
rs1312881481 694 dbSNP
rs1250892029 697 dbSNP
rs1225336412 701 dbSNP
rs1309121443 704 dbSNP
rs1323121930 708 dbSNP
rs954660833 708 dbSNP
rs987319052 730 dbSNP
rs910408715 731 dbSNP
rs1415081326 734 dbSNP
rs1202052453 736 dbSNP
rs186065372 743 dbSNP
rs1250443613 750 dbSNP
rs975491073 762 dbSNP
rs1375239213 770 dbSNP
rs1172057501 771 dbSNP
rs1475069550 771 dbSNP
rs925262960 777 dbSNP
rs116530632 778 dbSNP
rs563125138 779 dbSNP
rs1443148522 790 dbSNP
rs567779756 791 dbSNP
rs1053077444 793 dbSNP
rs1194099341 801 dbSNP
rs1481675460 820 dbSNP
rs1241118580 827 dbSNP
rs1258596963 828 dbSNP
rs1444000300 837 dbSNP
rs914156043 846 dbSNP
rs535309095 859 dbSNP
rs1294972232 874 dbSNP
rs1414693065 884 dbSNP
rs1334746736 890 dbSNP
rs561787613 891 dbSNP
rs1326472469 903 dbSNP
rs1392587091 906 dbSNP
rs528902806 911 dbSNP
rs1425752174 915 dbSNP
rs1332609672 921 dbSNP
rs1168555739 944 dbSNP
rs1461434719 949 dbSNP
rs1354189328 950 dbSNP
rs1392737604 959 dbSNP
rs1167472756 961 dbSNP
rs1473340897 961 dbSNP
rs1363395924 982 dbSNP
rs1466416130 997 dbSNP
rs1420932144 1010 dbSNP
rs578259334 1016 dbSNP
rs1238930274 1018 dbSNP
rs1212986948 1023 dbSNP
rs571929439 1024 dbSNP
rs1210164531 1039 dbSNP
rs145152436 1041 dbSNP
rs116007942 1046 dbSNP
rs1037469912 1052 dbSNP
rs1284242998 1053 dbSNP
rs898797222 1061 dbSNP
rs1438088844 1062 dbSNP
rs1369358020 1074 dbSNP
rs1213925468 1079 dbSNP
rs993164496 1082 dbSNP
rs765730317 1083 dbSNP
rs1026437334 1090 dbSNP
rs778325772 1092 dbSNP
rs1207517156 1097 dbSNP
rs1287467855 1106 dbSNP
rs1335188653 1107 dbSNP
rs1455599160 1110 dbSNP
rs1234750584 1111 dbSNP
rs1381156608 1114 dbSNP
rs1264024561 1117 dbSNP
rs144872319 1122 dbSNP
rs1254773435 1124 dbSNP
rs776032317 1125 dbSNP
rs1200212559 1126 dbSNP
rs1248594884 1127 dbSNP
rs1195868014 1133 dbSNP
rs1009258517 1137 dbSNP
rs78511533 1139 dbSNP
rs764120695 1142 dbSNP
rs1420605427 1146 dbSNP
rs1432049529 1151 dbSNP
rs1162106459 1156 dbSNP
rs1364545791 1161 dbSNP
rs1372587493 1162 dbSNP
rs751784970 1163 dbSNP
rs1182025464 1164 dbSNP
rs1277096380 1167 dbSNP
rs1258695969 1176 dbSNP
rs1478310595 1186 dbSNP
rs572677044 1188 dbSNP
rs1173241857 1202 dbSNP
rs1427686145 1216 dbSNP
rs56112080 1218 dbSNP
rs149031068 1223 dbSNP
rs564827766 1226 dbSNP
rs925374443 1233 dbSNP
rs1397022998 1237 dbSNP
rs1335388081 1242 dbSNP
rs188924364 1243 dbSNP
rs767832680 1250 dbSNP
rs1194997619 1252 dbSNP
rs1488510473 1264 dbSNP
rs1256410751 1266 dbSNP
rs1208221927 1278 dbSNP
rs913920115 1286 dbSNP
rs949645692 1289 dbSNP
rs1213473818 1294 dbSNP
rs1339374564 1299 dbSNP
rs1287848149 1301 dbSNP
rs1047106702 1306 dbSNP
rs926750857 1318 dbSNP
rs1312519347 1320 dbSNP
rs1340726111 1326 dbSNP
rs1413098229 1336 dbSNP
rs775529981 1338 dbSNP
rs938170025 1346 dbSNP
rs185733 1348 dbSNP
rs1409434072 1352 dbSNP
rs1322520053 1354 dbSNP
rs1169540316 1357 dbSNP
rs1478040462 1365 dbSNP
rs1219613224 1368 dbSNP
rs1280577202 1380 dbSNP
rs1185354292 1383 dbSNP
rs1486487566 1383 dbSNP
rs898911567 1390 dbSNP
rs993684844 1391 dbSNP
rs1315062072 1393 dbSNP
rs1435534360 1394 dbSNP
rs372333329 1394 dbSNP
rs1047377834 1400 dbSNP
rs1220947005 1402 dbSNP
rs1319048496 1403 dbSNP
rs563543474 1406 dbSNP
rs1292987777 1412 dbSNP
rs1213732984 1419 dbSNP
rs1381687041 1422 dbSNP
rs1284974428 1426 dbSNP
rs1441612124 1427 dbSNP
rs1262644050 1429 dbSNP
rs1488721273 1430 dbSNP
rs1196062783 1433 dbSNP
rs890141437 1439 dbSNP
rs1466018556 1440 dbSNP
rs142086612 1451 dbSNP
rs1173527788 1453 dbSNP
rs1162599549 1454 dbSNP
rs1017951163 1456 dbSNP
rs900305706 1462 dbSNP
rs1176227743 1463 dbSNP
rs1468175137 1464 dbSNP
rs1234053271 1481 dbSNP
rs999984071 1482 dbSNP
rs1032842283 1484 dbSNP
rs759064747 1493 dbSNP
rs1399523621 1496 dbSNP
rs549232817 1503 dbSNP
rs1157502618 1506 dbSNP
rs1323842787 1517 dbSNP
rs1290892772 1521 dbSNP
rs958102615 1527 dbSNP
rs567790221 1531 dbSNP
rs1311644237 1535 dbSNP
rs1447595243 1539 dbSNP
rs988657700 1550 dbSNP
rs1323773087 1551 dbSNP
rs535217365 1552 dbSNP
rs1459276954 1553 dbSNP
rs1350201339 1555 dbSNP
rs575862505 1561 dbSNP
rs368245280 1565 dbSNP
rs971151086 1568 dbSNP
rs1178772749 1575 dbSNP
rs982353167 1594 dbSNP
rs926863559 1602 dbSNP
rs543190117 1603 dbSNP
rs938282346 1611 dbSNP
rs1401344202 1621 dbSNP
rs1300852070 1640 dbSNP
rs1315414724 1641 dbSNP
rs1288400210 1648 dbSNP
rs1344490544 1654 dbSNP
rs1436851035 1655 dbSNP
rs1241015871 1656 dbSNP
rs1276468153 1657 dbSNP
rs1371077691 1658 dbSNP
rs547258969 1660 dbSNP
rs973558599 1662 dbSNP
rs1354441995 1667 dbSNP
rs1027159112 1671 dbSNP
rs1368044568 1672 dbSNP
rs1218904662 1682 dbSNP
rs920789801 1684 dbSNP
rs1362115733 1686 dbSNP
rs764019461 1687 dbSNP
rs754002767 1691 dbSNP
rs1392662402 1695 dbSNP
rs1174585489 1706 dbSNP
rs767103371 1707 dbSNP
rs752375749 1712 dbSNP
rs1047953658 1716 dbSNP
rs890098589 1730 dbSNP
rs944377790 1731 dbSNP
rs571969284 1733 dbSNP
rs1038716105 1734 dbSNP
rs539346507 1736 dbSNP
rs1312757646 1740 dbSNP
rs1294738884 1748 dbSNP
rs372532743 1765 dbSNP
rs1032788620 1769 dbSNP
rs1381504287 1771 dbSNP
rs1298450954 1772 dbSNP
rs1413718643 1773 dbSNP
rs765197245 1777 dbSNP
rs1009628236 1778 dbSNP
rs1161138829 1783 dbSNP
rs1466086875 1784 dbSNP
rs1378760774 1792 dbSNP
rs1170312552 1793 dbSNP
rs1477058891 1800 dbSNP
rs1426154567 1806 dbSNP
rs1389561726 1810 dbSNP
rs1485505514 1816 dbSNP
rs1405655876 1822 dbSNP
rs1254317032 1826 dbSNP
rs868130937 1827 dbSNP
rs1202296909 1828 dbSNP
rs555093846 1831 dbSNP
rs970715766 1833 dbSNP
rs982517249 1834 dbSNP
rs1319750718 1845 dbSNP
rs758140152 1848 dbSNP
rs959596620 1850 dbSNP
rs1309815931 1852 dbSNP
rs1353233107 1855 dbSNP
rs1314397845 1860 dbSNP
rs1396137759 1862 dbSNP
rs1379029685 1864 dbSNP
rs1298116964 1879 dbSNP
rs1464461381 1881 dbSNP
rs973674417 1885 dbSNP
rs1242396405 1886 dbSNP
rs1171899048 1889 dbSNP
rs1313077991 1892 dbSNP
rs1475071236 1897 dbSNP
rs763949046 1901 dbSNP
rs779929686 1906 dbSNP
rs1189826940 1916 dbSNP
rs112409584 1920 dbSNP
rs1292333874 1924 dbSNP
rs1176854895 1925 dbSNP
rs983186915 1926 dbSNP
rs1212883959 1931 dbSNP
rs540602963 1931 dbSNP
rs151216438 1933 dbSNP
rs565108583 1939 dbSNP
rs1266866693 1940 dbSNP
rs186243164 1954 dbSNP
rs1334665498 1972 dbSNP
rs1448335033 1974 dbSNP
rs1379822240 1981 dbSNP
rs1239254343 1984 dbSNP
rs757201914 1985 dbSNP
rs1442158890 1988 dbSNP
rs1181202484 1990 dbSNP
rs1461274340 1994 dbSNP
rs1388959654 1998 dbSNP
rs1458668041 1999 dbSNP
rs900201159 1999 dbSNP
rs1363427294 2007 dbSNP
rs1176908683 2010 dbSNP
rs1441588402 2017 dbSNP
rs935899891 2024 dbSNP
rs1192876934 2026 dbSNP
rs140412734 2026 dbSNP
rs891594678 2030 dbSNP
rs1269117146 2031 dbSNP
rs1210209523 2044 dbSNP
rs1349576317 2049 dbSNP
rs1164589217 2050 dbSNP
rs1241733067 2052 dbSNP
rs1353747417 2053 dbSNP
rs1310652717 2058 dbSNP
rs1416965097 2077 dbSNP
rs1464847618 2093 dbSNP
rs1329856534 2104 dbSNP
rs1326017422 2110 dbSNP
rs1010489618 2120 dbSNP
rs879144982 2126 dbSNP
rs1402347280 2128 dbSNP
rs572642245 2129 dbSNP
rs1450419217 2130 dbSNP
rs906601294 2137 dbSNP
rs1477038245 2140 dbSNP
rs1379282389 2152 dbSNP
rs1199367740 2157 dbSNP
rs1339908607 2158 dbSNP
rs277945 2163 dbSNP
rs12659208 2168 dbSNP
rs1279076241 2169 dbSNP
rs959378980 2172 dbSNP
rs1343554761 2176 dbSNP
rs1316305269 2178 dbSNP
rs1218406317 2180 dbSNP
rs1259176161 2181 dbSNP
rs1459467481 2183 dbSNP
rs576685305 2184 dbSNP
rs1028329244 2186 dbSNP
rs544195973 2187 dbSNP
rs1402008568 2189 dbSNP
rs1361404818 2202 dbSNP
rs1202370896 2205 dbSNP
rs1256096172 2209 dbSNP
rs950872474 2213 dbSNP
rs1404316447 2223 dbSNP
rs1173046568 2229 dbSNP
rs1442433140 2234 dbSNP
rs1421128056 2237 dbSNP
rs758473463 2243 dbSNP
rs1189023980 2249 dbSNP
rs1256345746 2252 dbSNP
rs1370979874 2271 dbSNP
rs562671450 2278 dbSNP
rs1171092695 2282 dbSNP
rs1201470604 2300 dbSNP
rs1317691530 2302 dbSNP
rs1425556108 2307 dbSNP
rs1468063585 2314 dbSNP
rs1220834592 2330 dbSNP
rs1341415791 2340 dbSNP
rs1171882282 2343 dbSNP
rs912093985 2351 dbSNP
rs966168554 2353 dbSNP
rs974483060 2354 dbSNP
rs1464973495 2355 dbSNP
rs1396615071 2357 dbSNP
rs921575199 2358 dbSNP
rs868210027 2363 dbSNP
rs1179702260 2366 dbSNP
rs1416761323 2366 dbSNP
rs1473501504 2374 dbSNP
rs1237488631 2380 dbSNP
rs1336322973 2381 dbSNP
rs1457754369 2383 dbSNP
rs1256689080 2384 dbSNP
rs1338696722 2394 dbSNP
rs1200961326 2399 dbSNP
rs1318988204 2400 dbSNP
rs191484049 2407 dbSNP
rs1279204564 2409 dbSNP
rs1226763453 2417 dbSNP
rs1381431925 2429 dbSNP
rs1284919050 2436 dbSNP
rs1320388889 2438 dbSNP
rs935678902 2442 dbSNP
rs547394341 2445 dbSNP
rs567206276 2450 dbSNP
rs543042747 2453 dbSNP
rs376990227 2455 dbSNP
rs1414051529 2456 dbSNP
rs913139607 2458 dbSNP
rs946017873 2460 dbSNP
rs1236917306 2464 dbSNP
rs747762647 2479 dbSNP
rs1045959244 2486 dbSNP
rs1458501722 2491 dbSNP
rs1246420136 2504 dbSNP
rs1255851786 2516 dbSNP
rs182521482 2518 dbSNP
rs1003602749 2535 dbSNP
rs1201657479 2542 dbSNP
rs1259111587 2543 dbSNP
rs1239563362 2544 dbSNP
rs1351542100 2546 dbSNP
rs528646320 2547 dbSNP
rs1447339676 2551 dbSNP
rs186201381 2559 dbSNP
rs571881951 2572 dbSNP
rs1479302685 2578 dbSNP
rs994841388 2583 dbSNP
rs1350149694 2593 dbSNP
rs1352253857 2594 dbSNP
rs1378134549 2599 dbSNP
rs1417345072 2600 dbSNP
rs1467575785 2601 dbSNP
rs1174369721 2609 dbSNP
rs1358747480 2611 dbSNP
rs1160974582 2617 dbSNP
rs1420271319 2618 dbSNP
rs1425057412 2619 dbSNP
rs1027690047 2624 dbSNP
rs1419210973 2641 dbSNP
rs149542011 2648 dbSNP
rs1005157757 2658 dbSNP
rs1487352093 2667 dbSNP
rs1288337272 2668 dbSNP
rs1019507797 2679 dbSNP
rs1311581950 2680 dbSNP
rs1342614914 2683 dbSNP
rs1299064251 2688 dbSNP
rs771536571 2689 dbSNP
rs1301083721 2691 dbSNP
rs1277190863 2698 dbSNP
rs775049696 2706 dbSNP
rs1362056609 2713 dbSNP
rs1298337947 2716 dbSNP
rs765242526 2721 dbSNP
rs1284539998 2737 dbSNP
rs1359129669 2751 dbSNP
rs1352269333 2765 dbSNP
rs532809518 2768 dbSNP
rs1287638489 2769 dbSNP
rs112916456 2770 dbSNP
rs957160047 2785 dbSNP
rs1190400926 2793 dbSNP
rs11738083 2804 dbSNP
rs989765541 2811 dbSNP
rs1267855829 2813 dbSNP
rs1434806864 2816 dbSNP
rs1482943638 2817 dbSNP
rs1254199608 2819 dbSNP
rs1179524521 2824 dbSNP
rs1379629547 2842 dbSNP
rs1212078700 2843 dbSNP
rs1439090409 2847 dbSNP
rs912924171 2850 dbSNP
rs1216551463 2852 dbSNP
rs534484406 2854 dbSNP
rs562386842 2860 dbSNP
rs1278396144 2868 dbSNP
rs1456624550 2873 dbSNP
rs1394972955 2876 dbSNP
rs1045666311 2884 dbSNP
rs1301612915 2885 dbSNP
rs1293268139 2888 dbSNP
rs115686084 2891 dbSNP
rs200905769 2892 dbSNP
rs760690875 2892 dbSNP
rs937165493 2892 dbSNP
rs1170475725 2902 dbSNP
rs190875933 2905 dbSNP
rs1426086664 2911 dbSNP
rs1194108923 2913 dbSNP
rs1423332344 2914 dbSNP
rs566181979 2915 dbSNP
rs1254084579 2923 dbSNP
rs1183663738 2927 dbSNP
rs1461756171 2933 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HEK293S
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in GSM1084064. RNA binding protein: AGO2. Condition:CLIP_noemetine_AbnovaAb HITS-CLIP data was present in GSM1084065. RNA binding protein: AGO2. Condition:CLIP_emetine_AbnovaAb HITS-CLIP data was present in GSM1084079. RNA binding protein: AGO2. Condition:CLIP_hippuristanol_rep2_AbnovaAb ...

- Karginov FV; Hannon GJ, 2013, Genes & development.

Article - Karginov FV; Hannon GJ
- Genes & development, 2013
When adapting to environmental stress, cells attenuate and reprogram their translational output. In part, these altered translation profiles are established through changes in the interactions between RNA-binding proteins and mRNAs. The Argonaute 2 (Ago2)/microRNA (miRNA) machinery has been shown to participate in stress-induced translational up-regulation of a particular mRNA, CAT-1; however, a detailed, transcriptome-wide understanding of the involvement of Ago2 in the process has been lacking. Here, we profiled the overall changes in Ago2-mRNA interactions upon arsenite stress by cross-linking immunoprecipitation (CLIP) followed by high-throughput sequencing (CLIP-seq). Ago2 displayed a significant remodeling of its transcript occupancy, with the majority of 3' untranslated region (UTR) and coding sequence (CDS) sites exhibiting stronger interaction. Interestingly, target sites that were destined for release from Ago2 upon stress were depleted in miRNA complementarity signatures, suggesting an alternative mode of interaction. To compare the changes in Ago2-binding patterns across transcripts with changes in their translational states, we measured mRNA profiles on ribosome/polysome gradients by RNA sequencing (RNA-seq). Increased Ago2 occupancy correlated with stronger repression of translation for those mRNAs, as evidenced by a shift toward lighter gradient fractions upon stress, while release of Ago2 was associated with the limited number of transcripts that remained translated. Taken together, these data point to a role for Ago2 and the mammalian miRNAs in mediating the translational component of the stress response.
LinkOut: [PMID: 23824327]
CLIP-seq Support 1 for dataset GSM1084064
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_noemetine_AbnovaAb
Location of target site ENST00000380675.2 | 3UTR | CCAGGAGGAGGUUGAGGCUGC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM1084065
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_emetine_AbnovaAb
Location of target site ENST00000380675.2 | 3UTR | CCAGGAGGAGGUUGAGGCUGCAGUGAGC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
CLIP-seq Support 3 for dataset GSM1084079
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_hippuristanol_rep2_AbnovaAb
Location of target site ENST00000380675.2 | 3UTR | CCAGGAGGAGGUUGAGGCUGC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
68 hsa-miR-378g Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT444739 SMYD1 SET and MYND domain containing 1 2 2
MIRT456104 VAV3 vav guanine nucleotide exchange factor 3 2 4
MIRT458683 MRI1 methylthioribose-1-phosphate isomerase 1 2 2
MIRT465802 TMEM91 transmembrane protein 91 2 2
MIRT470843 PLXND1 plexin D1 2 2
MIRT497263 GRK6 G protein-coupled receptor kinase 6 2 2
MIRT497674 SYNGR1 synaptogyrin 1 2 2
MIRT498218 TLN2 talin 2 2 2
MIRT498309 BCL11B B-cell CLL/lymphoma 11B 2 2
MIRT504046 TOMM5 translocase of outer mitochondrial membrane 5 2 2
MIRT518196 CLEC4E C-type lectin domain family 4 member E 2 2
MIRT533143 WNT10A Wnt family member 10A 2 2
MIRT533540 TPR translocated promoter region, nuclear basket protein 2 2
MIRT533679 TMEM86A transmembrane protein 86A 2 2
MIRT540892 SRSF9 serine and arginine rich splicing factor 9 2 2
MIRT541329 G3BP1 G3BP stress granule assembly factor 1 2 2
MIRT541850 PLIN5 perilipin 5 2 2
MIRT551431 F2 coagulation factor II, thrombin 2 2
MIRT552105 PPP1R1A protein phosphatase 1 regulatory inhibitor subunit 1A 2 2
MIRT564912 YTHDF1 YTH N6-methyladenosine RNA binding protein 1 2 2
MIRT568605 ACVR2A activin A receptor type 2A 2 2
MIRT572604 PAPLN papilin, proteoglycan like sulfated glycoprotein 2 2
MIRT574234 DMRT2 doublesex and mab-3 related transcription factor 2 2 2
MIRT575688 Map1b microtubule-associated protein 1B 2 2
MIRT576643 Mill2 MHC I like leukocyte 2 1 1
MIRT609877 RAD54L2 RAD54 like 2 2 4
MIRT610057 MYBPC1 myosin binding protein C, slow type 2 2
MIRT610791 KLK2 kallikrein related peptidase 2 2 2
MIRT617175 GOSR2 golgi SNAP receptor complex member 2 2 2
MIRT617707 RUSC2 RUN and SH3 domain containing 2 2 2
MIRT620577 WBSCR27 methyltransferase like 27 2 4
MIRT622657 POU2F3 POU class 2 homeobox 3 2 4
MIRT624561 BDP1 B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB 2 2
MIRT634255 TIAL1 TIA1 cytotoxic granule associated RNA binding protein like 1 2 2
MIRT634677 GDE1 glycerophosphodiester phosphodiesterase 1 2 2
MIRT635254 FBXL20 F-box and leucine rich repeat protein 20 2 2
MIRT637081 SELPLG selectin P ligand 2 2
MIRT639021 AAK1 AP2 associated kinase 1 2 2
MIRT640396 ZNF785 zinc finger protein 785 2 2
MIRT642441 CLUAP1 clusterin associated protein 1 2 2
MIRT645666 ADK adenosine kinase 2 2
MIRT646083 MGST3 microsomal glutathione S-transferase 3 2 2
MIRT650513 UFM1 ubiquitin fold modifier 1 2 2
MIRT652474 TMEM181 transmembrane protein 181 2 2
MIRT652584 TIMM8A translocase of inner mitochondrial membrane 8A 2 2
MIRT654763 PRKAR2A protein kinase cAMP-dependent type II regulatory subunit alpha 2 2
MIRT655200 PHAX phosphorylated adaptor for RNA export 2 2
MIRT658353 FAM65B RHO family interacting cell polarization regulator 2 2 2
MIRT661820 PRPSAP1 phosphoribosyl pyrophosphate synthetase associated protein 1 2 2
MIRT662190 MEI1 meiotic double-stranded break formation protein 1 2 2
MIRT664375 CYB5A cytochrome b5 type A 2 2
MIRT665025 ELK1 ELK1, ETS transcription factor 2 2
MIRT666492 SBNO1 strawberry notch homolog 1 2 2
MIRT668480 EXOSC2 exosome component 2 2 2
MIRT682768 TMEM120B transmembrane protein 120B 2 2
MIRT689628 NAA30 N(alpha)-acetyltransferase 30, NatC catalytic subunit 2 2
MIRT691846 OSCAR osteoclast associated, immunoglobulin-like receptor 2 2
MIRT696490 COX6B1 cytochrome c oxidase subunit 6B1 2 2
MIRT712480 FSTL3 follistatin like 3 2 2
MIRT712780 ZNF154 zinc finger protein 154 2 2
MIRT716607 MPPED1 metallophosphoesterase domain containing 1 2 2
MIRT719357 ITPKB inositol-trisphosphate 3-kinase B 2 2
MIRT719739 SLC39A11 solute carrier family 39 member 11 2 2
MIRT722569 C1orf95 stum, mechanosensory transduction mediator homolog 2 2
MIRT722838 C17orf102 chromosome 17 open reading frame 102 2 2
MIRT733138 LINC00963 long intergenic non-protein coding RNA 963 3 0
MIRT733139 CHI3L1 chitinase 3 like 1 3 0
MIRT736944 TARBP2 TARBP2, RISC loading complex RNA binding subunit 2 0
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-378g Fluorouracil 3385 NSC19893 approved resistant High Pancreatic Cancer cell line (PANC-1)
hsa-miR-378g Gemcitabine 60750 NSC613327 approved resistant High Pancreatic Cancer cell line (PANC-1)
hsa-miR-378g Vemurafenib 42611257 NSC761431 approved sensitive High Melanoma cell line (A375, IGR37, 501Mel)
hsa-miR-378g Dabrafenib 44462760 NSC764134 approved sensitive High Melanoma cell line (A375, IGR37, 501Mel)
hsa-miR-378g Trametinib 11707110 NSC758246 approved resistant High Melanoma cell line (WM266) (1uM)
hsa-miR-378g Vemurafenib 42611257 NSC761431 approved resistant High Melanoma cell line (WM266) (1uM)
hsa-miR-378g Trametinib 11707110 NSC758246 approved resistant High Melanoma cell line (WM266) (500nM)
hsa-miR-378g Vemurafenib 42611257 NSC761431 approved resistant High Melanoma cell line (WM266) (500nM)
hsa-miR-378g Vemurafenib 42611257 NSC761431 approved resistant High Melanoma cell line (WM266) (2uM)
hsa-miR-378g Trametinib 11707110 NSC758246 approved resistant High Melanoma cell line (WM266) (2uM)
hsa-miR-378g Gemcitabine 60750 NSC613327 approved sensitive High Pancreatic Cancer cell line (AsPC-1)
hsa-miR-378g Trametinib 11707110 NSC758246 approved sensitive High Melanoma cell line
hsa-miR-378g Vemurafenib 42611257 NSC761431 approved sensitive High Melanoma cell line
hsa-miR-378g Dabrafenib + Trametinib sensitive High Melanoma cell line
hsa-miR-378g Dabrafenib 44462760 NSC764134 approved sensitive High Melanoma cell line
hsa-mir-378g Decitabine 451668 approved sensitive tissue (esopheageal cancer)
hsa-miR-378g Temozolomide 5394 NSC362856 approved resistant cell line (U251)
hsa-miR-378g Gefitinib 123631 NSC715055 approved resistant cell line (HCC827)
hsa-miR-378g Osimertinib 71496458 NSC779217 approved sensitive cell line (PC9)
hsa-miR-378g Osimertinib 71496458 NSC779217 approved resistant cell line (HCC827)
hsa-miR-378g Tripterygium wilfordii Hook F resistant tissue
hsa-miR-378g Vemurafenib 42611257 NSC761431 approved sensitive cell line (LM17)
hsa-miR-378g Vemurafenib 42611257 NSC761431 approved sensitive cell line (LM36)
hsa-miR-378g Vemurafenib 42611257 NSC761431 approved sensitive cell line (LM16)
hsa-miR-378g Paclitaxel 36314 NSC125973 approved sensitive cell line (BAS)
hsa-miR-378g Doxorubicin 31703 NSC123127 approved sensitive cell line (BAS)
hsa-miR-378g Neoadjuvant chemotherapy resistant tissue (breast cancer)
hsa-miR-378g Gemcitabine 60750 NSC613327 approved resistant cell line (Panc1-GR3)
hsa-miR-378g Gemcitabine 60750 NSC613327 approved resistant cell line (Panc1-GR4)

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