pre-miRNA Information
pre-miRNA hsa-mir-640   
Genomic Coordinates chr19: 19435063 - 19435158
Synonyms MIRN640, hsa-mir-640, MIR640
Description Homo sapiens miR-640 stem-loop
Comment None
RNA Secondary Structure
Associated Diseases

Mature miRNA Information
Mature miRNA hsa-miR-640
Sequence 61| AUGAUCCAGGAACCUGCCUCU |81
Evidence Experimental
Experiments RT-PCR
DRVs in miRNA
Mutant ID Mutant Position Mutant Source
COSN30153378 1 COSMIC
COSN23015356 12 COSMIC
COSN30513185 19 COSMIC
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs111726405 1 dbSNP
rs765622881 2 dbSNP
rs1249744889 6 dbSNP
rs752995186 12 dbSNP
rs758746736 13 dbSNP
rs918887970 19 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol ARHGEF39   
Synonyms C9orf100
Description Rho guanine nucleotide exchange factor 39
Transcript NM_032818   
Expression
Putative miRNA Targets on ARHGEF39
3'UTR of ARHGEF39
(miRNA target sites are highlighted)
>ARHGEF39|NM_032818|3'UTR
   1 AGGAATCTTATAGATTCCAGAACTCAGGATACCTCAGGGATAGGTCACAGCCAAGAGTACAAAGGAATCTTCAGTACTGA
  81 ACAAAACAGAACCCTTCATGATTTGACAAAGGTCACTTTCTGTTTGCCTGGACCAAGCTACTCCAGATCATCTGACCAAC
 161 TCTTAAAAATCACGGCCAGGCACAGTGGCTCATGCCTGTAATCCCAGCACTTTGGGAAGCAGAGGTGGCAGGATCATTCC
 241 AGCCCAGGAGTTCAAGACCAGCCTGGGCAACACAGTGAGTGAGACCCTGTCTCTATTTAAGAAAAAATAATTAAGAAATT
 321 TTATTAAAAAAGAAGAATCAGGAAACCAAGTCCAACCCAACTAAACCTCAAATGAACCAGCCCCTAACACAGATGAGGGG
 401 ATTTGGGACTGATAAGCTCTGTGCTGTGTCCATGGCCCGTCATTTATCAAGGCTGCAGCTTTGTAAATGTGGCTATTTTT
 481 ATGTTGTGTATAGTTTCTATCATTTATTTTTCCACTGGATTTGAGTAAAGTTTTTTTTCTTTTTTTTGGGAAAGACCCTT
 561 CTGTCTCAGTTTTGCTATGAGAAAAGGGATTTTTGGGCCCTGAACGCGGGCATGCTGGTGGCCTCAGGAATACGAGGAAA
 641 AGAGCTGGAGCTCCCTCTATCTTCTCTGCTGTCACACTGGAAGGCAGCCTCTTTTTGTCCTAATAAGGACAGCTCTTCAA
 721 GAAGGCCCAGTTGTCCTTAGGCACCTAGTATGGGTGTGTACAACCAACTAGGATCGAAAAAACACACAGGAGCACTCCAT
 801 CATGAAAACAGACTTTGTTTTAGTCGACCTTCAGCTGTCGTCCCTCCTTCCCAGCCAAGGCTGTGACTGGGGCCCTTTGC
 881 CACAGCCTGGCTGCACCTTCTCCGTAGTCCCCGCCCCACCTCCCAGGAAGTAGCTAGGTTCCATGTCTCTGTGCTCCAGT
 961 TTGTGGGCTCCTCCCAGGCCTGACTGTCACCAATCTCCTCCTCGTCCTCCTTTAAACAGAAGTCCTCAGGAAGAGGTCTG
1041 CTGGCCTCTGTGTGGGGAGAGATCAGGAATGTTCCAGTTTCAGAGACTTTGTCTCCACCTCCAGCAGACTCGCCTCCCGA
1121 GCCTTCACCTGGTTCTGAAGCCTCCATATCCTTGTCCGGCTTGCTATCTTGCAGCAGCTCGTGGATGGTCCATAGCTTCA
1201 TGTTCAGAAGCTCCTGCTGGGCTCCAGCCAGAGTAGTCACACTGAAGAAATGTCCACTCAGTGGCTCCCAACCTATGTCC
1281 CCATTCCTCCCTCCTGCCACAAATTCCCCAAAAATTCACAGAATCATTGCTCTCCTCACCGCTCAAAAAGGGGGTCCAGC
1361 TGGGCCATCAGGTTGTTCAGGTGCTGCTCTGTCTGGGCCAGCTGTTGTGTCAACTGGGCCAGCTGTTGCTCTGGGGATAA
1441 GGGAAAAAAGGGGGCAGAAGTGGTTATGTATCTTCTGCTGTCCCCTAAACTCCCCCGACCCAGCACAGACTTCTGCTAAA
1521 CCCACCTGACTGCAGTGGCTGCTGCTTGCTTGCCTCCTCGTGGAGAACCGCAGTTTCATCTTTCCCCTGTTGTGGAAGAA
1601 GGAAAGGGCAGTACTGAAGCAACAAGGTTCTGCTCCATCACCTCAGTCTCCAGAGCCAGCCAAGAGAGAGTGCAATTTGA
1681 GATGGAGACAGTGATTGGGTTTTTACCTCAGAGAATCACAATCCTAGTCTATCTAGCTCCTCACCCAGCATATGAAGCGA
1761 CGTCCTATGTCCCACACATGGTCAGTTTGCTGAAACACCTCCAGGAATGAGCAACTCCCTCCGGTTTGAAAAAAGCTCTG
1841 GTGGCTGAGTGCTGTGGCTCACACCTGTAATCCCAGCACTTCGGGAAGCCAAGGTGGGTGGATCACCTGAGGTCAGGAGT
1921 TTGAGACCAGCCTGGCCAACACGGTGAAACCCTGTCTCTATTAAAAATACAAAAATTAGCCGGGCGTGGTGGCAGGTGCC
2001 TGTAATCCCAGTTACTTGAGAGGCTGAGGCAGGAGAATCGCTTGAACCTGGGAGCCAGAGGTTGCAGTGAGCCGAGATTG
2081 CGCCGCTGCACTCCAGCCTGGGTGACAGAGCGAGACTCCATCTCGAAAAAAACAAAAACTTTGGTTGTTAGACAGTTCAT
2161 GCACAAAGCCAAAATTTGTCCTTTATGTATCTTCTTTCCATAGTGCTTACTGGAGCCTTCCAAAATAATGTCTCCTCAAG
2241 GTGACAGCCCCTCAGGAATTTGAAGGCAATGGTCACACCCTCACCCACTTTCCTGAGTTTTTTCTGGTTTATTAACGTCA
2321 GTCTTTACAGTCAGTGCTCATTGACGGTGGTTTTCTCTGGTTGTTTCCTGAACACGTAGTGCTCTTAAAGCAATGCCCTG
2401 AGGAGAATACAATTCTCCAGGGGCATTCTGATTGGCAGGTGAAGCACAGTGCCATGTTCCCAGCACTGATTTGGGAAGTG
2481 GCTTGTCACATCCCACAGTGAACTCAGTCAACTGGAATGCCTAACTCTCTTTCATAAGACCTCCTGCTACATTATGTTTC
2561 TCCCAGACTGTACTCAGGTCCAAGAACAGAATTTACTAGTCTATCCTTCTCAAAGTTCATCATTAAATTCAGTCATTCAT
2641 CCT
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' ucUCCG-UCCAAGGACCUAGUa 5'
            || | ||||   ||||||| 
Target 5' gaAGCCAAGGTGGGTGGATCAc 3'
1885 - 1906 155.00 -14.80
2
miRNA  3' ucUCCG--UCCAAGGACCUAGUa 5'
            | ||  ||||  | |||||| 
Target 5' ggAAGCAGAGGTGGCAGGATCAt 3'
215 - 237 129.00 -16.50
3
miRNA  3' ucuccGUCCAA-GGACCUAGUa 5'
               | | || |||||| || 
Target 5' actttCTGTTTGCCTGGACCAa 3'
115 - 136 124.00 -10.40
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN17603046 41 COSMIC
COSN26648539 65 COSMIC
COSN30181962 91 COSMIC
COSN30511140 106 COSMIC
COSN30172217 143 COSMIC
COSN30145580 152 COSMIC
COSN30743099 184 COSMIC
COSN14683478 579 COSMIC
COSN22799167 587 COSMIC
COSN30742730 694 COSMIC
COSN31560248 706 COSMIC
COSN30675776 726 COSMIC
COSN26966703 762 COSMIC
COSM8170306 800 COSMIC
COSM8199868 812 COSMIC
COSM5640954 813 COSMIC
COSM1624944 816 COSMIC
COSM8282406 826 COSMIC
COSM8989070 839 COSMIC
COSM1108684 875 COSMIC
COSM4406967 896 COSMIC
COSM5630637 902 COSMIC
COSM3907188 903 COSMIC
COSM9659693 922 COSMIC
COSM4409268 927 COSMIC
COSM9617418 944 COSMIC
COSM4505186 966 COSMIC
COSM6255825 968 COSMIC
COSM4669661 980 COSMIC
COSM6851242 994 COSMIC
COSM5359665 1001 COSMIC
COSM8368596 1003 COSMIC
COSM5906837 1030 COSMIC
COSM1242095 1046 COSMIC
COSM4669660 1049 COSMIC
COSM6621253 1069 COSMIC
COSM4409162 1083 COSMIC
COSM6894755 1107 COSMIC
COSM223327 1117 COSMIC
COSM1462237 1118 COSMIC
COSM5876201 1119 COSMIC
COSM4669659 1157 COSMIC
COSM6621254 1158 COSMIC
COSM9924067 1164 COSMIC
COSM9026657 1185 COSMIC
COSM6837411 1190 COSMIC
COSM6837410 1191 COSMIC
COSM5628986 1233 COSMIC
COSM8905756 1247 COSMIC
COSN26966701 1310 COSMIC
COSN19672517 1315 COSMIC
COSN26966704 1321 COSMIC
COSM6604327 1330 COSMIC
COSM7675340 1337 COSMIC
COSM7779693 1341 COSMIC
COSM3367703 1359 COSMIC
COSM1489989 1369 COSMIC
COSM8598364 1379 COSMIC
COSM1108682 1387 COSMIC
COSM8341123 1389 COSMIC
COSN26436080 1449 COSMIC
COSN31545207 1450 COSMIC
COSN31501571 1453 COSMIC
COSN213984 1462 COSMIC
COSM7763294 1496 COSMIC
COSM1624943 1515 COSMIC
COSM6115956 1556 COSMIC
COSM309891 1560 COSMIC
COSM7952291 1569 COSMIC
COSM9093909 1570 COSMIC
COSM7663602 1578 COSMIC
COSM7521064 1589 COSMIC
COSN26966702 1606 COSMIC
COSN30191574 1609 COSMIC
COSN30503177 1609 COSMIC
COSN31591953 1615 COSMIC
COSN30162559 1635 COSMIC
COSN213983 1640 COSMIC
COSN31498872 1661 COSMIC
COSN30138271 1686 COSMIC
COSN26434768 1777 COSMIC
COSN14697423 1887 COSMIC
COSN20490341 2082 COSMIC
COSN14992055 2240 COSMIC
COSN14687773 2287 COSMIC
COSN14713876 2393 COSMIC
COSN14932997 2544 COSMIC
rs35234337 741 GWAS
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1233995094 2 dbSNP
rs376843558 3 dbSNP
rs920113208 9 dbSNP
rs754678407 11 dbSNP
rs751301439 16 dbSNP
rs1458259543 25 dbSNP
rs1367936918 37 dbSNP
rs1245283743 38 dbSNP
rs72727021 41 dbSNP
rs571432251 43 dbSNP
rs1411786697 44 dbSNP
rs762618751 47 dbSNP
rs749939324 48 dbSNP
rs764672860 50 dbSNP
rs1171180959 54 dbSNP
rs1399491238 70 dbSNP
rs1446393465 74 dbSNP
rs991254555 78 dbSNP
rs369229378 90 dbSNP
rs1338533283 91 dbSNP
rs1383235870 93 dbSNP
rs1446893166 95 dbSNP
rs1282031368 98 dbSNP
rs762587408 100 dbSNP
rs986824429 109 dbSNP
rs958410728 110 dbSNP
rs577712321 125 dbSNP
rs1032682955 129 dbSNP
rs1197298330 133 dbSNP
rs1000308916 134 dbSNP
rs902841488 138 dbSNP
rs867754154 154 dbSNP
rs187935173 156 dbSNP
rs56077544 157 dbSNP
rs1050526849 160 dbSNP
rs1429368240 165 dbSNP
rs1187187404 168 dbSNP
rs572319479 173 dbSNP
rs550987771 174 dbSNP
rs899203092 180 dbSNP
rs1406594010 186 dbSNP
rs112231054 189 dbSNP
rs964948960 194 dbSNP
rs1331894413 195 dbSNP
rs529933416 198 dbSNP
rs940720269 212 dbSNP
rs1258132624 223 dbSNP
rs1337756739 227 dbSNP
rs1001076608 228 dbSNP
rs1285718077 229 dbSNP
rs1346283797 241 dbSNP
rs1213007712 244 dbSNP
rs902298628 248 dbSNP
rs79058295 255 dbSNP
rs1013243166 264 dbSNP
rs982717607 266 dbSNP
rs1298102329 269 dbSNP
rs1429931044 271 dbSNP
rs1226963432 273 dbSNP
rs896146541 275 dbSNP
rs1355292328 276 dbSNP
rs949923460 279 dbSNP
rs1409885285 283 dbSNP
rs1400989561 284 dbSNP
rs1257282968 285 dbSNP
rs183825465 289 dbSNP
rs1313994144 294 dbSNP
rs1358123723 295 dbSNP
rs531161831 295 dbSNP
rs556562071 296 dbSNP
rs1188413327 302 dbSNP
rs1233152152 303 dbSNP
rs1273498899 307 dbSNP
rs1353257989 312 dbSNP
rs1241196807 315 dbSNP
rs958562857 324 dbSNP
rs938278755 327 dbSNP
rs1368738379 330 dbSNP
rs1224834185 331 dbSNP
rs1269614234 332 dbSNP
rs1451034585 336 dbSNP
rs1196649351 344 dbSNP
rs144878718 345 dbSNP
rs978524011 346 dbSNP
rs1462634368 347 dbSNP
rs1375005211 371 dbSNP
rs570785403 373 dbSNP
rs940166329 375 dbSNP
rs1474750583 377 dbSNP
rs1389366743 384 dbSNP
rs193212801 386 dbSNP
rs1322107712 403 dbSNP
rs1338007231 406 dbSNP
rs1448010748 419 dbSNP
rs1308908431 423 dbSNP
rs986875444 431 dbSNP
rs955410351 432 dbSNP
rs1266171188 433 dbSNP
rs1189930797 436 dbSNP
rs534259608 438 dbSNP
rs140553174 439 dbSNP
rs565320939 440 dbSNP
rs1029118430 458 dbSNP
rs1177791977 465 dbSNP
rs1236066271 473 dbSNP
rs996338181 475 dbSNP
rs1183794014 476 dbSNP
rs964675015 479 dbSNP
rs1195879567 483 dbSNP
rs375764017 490 dbSNP
rs76753837 496 dbSNP
rs1263304665 497 dbSNP
rs1169091020 498 dbSNP
rs1232356702 501 dbSNP
rs1000727643 504 dbSNP
rs1466538453 513 dbSNP
rs1331173700 516 dbSNP
rs940767181 518 dbSNP
rs11546560 539 dbSNP
rs1454826678 539 dbSNP
rs966511387 539 dbSNP
rs1340055850 547 dbSNP
rs1020693751 548 dbSNP
rs1242734424 548 dbSNP
rs1444348492 548 dbSNP
rs886456463 556 dbSNP
rs369305081 557 dbSNP
rs1235624851 563 dbSNP
rs1200777344 565 dbSNP
rs896200450 569 dbSNP
rs1349188117 572 dbSNP
rs1306296681 574 dbSNP
rs41303685 579 dbSNP
rs1194699439 580 dbSNP
rs563435557 601 dbSNP
rs10972554 605 dbSNP
rs532795883 606 dbSNP
rs564073357 607 dbSNP
rs940207412 608 dbSNP
rs1048821534 612 dbSNP
rs1341182780 618 dbSNP
rs1217974167 621 dbSNP
rs1051227392 625 dbSNP
rs758396886 633 dbSNP
rs925793173 634 dbSNP
rs1363155362 636 dbSNP
rs921321712 648 dbSNP
rs1420334473 658 dbSNP
rs1206512882 659 dbSNP
rs368175461 659 dbSNP
rs967127146 661 dbSNP
rs1190828908 662 dbSNP
rs1422139305 692 dbSNP
rs925262144 696 dbSNP
rs912909575 699 dbSNP
rs372741760 708 dbSNP
rs1274133896 710 dbSNP
rs1464787637 720 dbSNP
rs1215944909 721 dbSNP
rs1349064791 722 dbSNP
rs1361362623 728 dbSNP
rs979749244 736 dbSNP
rs35234337 741 dbSNP
rs1240449300 747 dbSNP
rs376817292 749 dbSNP
rs773527394 750 dbSNP
rs1029232897 756 dbSNP
rs772275577 760 dbSNP
rs1300400684 765 dbSNP
rs775608672 774 dbSNP
rs759876777 775 dbSNP
rs1321799374 776 dbSNP
rs1286326546 779 dbSNP
rs996429504 786 dbSNP
rs1352467404 788 dbSNP
rs774600251 789 dbSNP
rs771140542 792 dbSNP
rs1270335063 793 dbSNP
rs1491004119 799 dbSNP
rs749430166 802 dbSNP
rs371120243 803 dbSNP
rs769798574 809 dbSNP
rs747983010 810 dbSNP
rs1383249945 811 dbSNP
rs781163461 812 dbSNP
rs754860048 813 dbSNP
rs770854256 813 dbSNP
rs1381164268 814 dbSNP
rs149945904 815 dbSNP
rs139159879 821 dbSNP
rs758064807 825 dbSNP
rs749959956 826 dbSNP
rs764613156 828 dbSNP
rs1391751043 832 dbSNP
rs1189029600 833 dbSNP
rs761267468 834 dbSNP
rs753194449 838 dbSNP
rs377274752 839 dbSNP
rs41298216 840 dbSNP
rs774688219 844 dbSNP
rs1202553060 846 dbSNP
rs766603469 852 dbSNP
rs763119314 854 dbSNP
rs1228702794 860 dbSNP
rs773360401 861 dbSNP
rs769809480 862 dbSNP
rs748224933 864 dbSNP
rs561977892 868 dbSNP
rs768700936 871 dbSNP
rs746812364 872 dbSNP
rs1323924577 873 dbSNP
rs747003370 873 dbSNP
rs1372702725 874 dbSNP
rs1168276250 883 dbSNP
rs777404170 884 dbSNP
rs779926968 889 dbSNP
rs113536720 890 dbSNP
rs372621134 893 dbSNP
rs745464083 895 dbSNP
rs10441686 896 dbSNP
rs1250399977 901 dbSNP
rs756761846 903 dbSNP
rs753387364 904 dbSNP
rs879048977 909 dbSNP
rs1252008086 912 dbSNP
rs1199534720 913 dbSNP
rs767970537 915 dbSNP
rs755422129 916 dbSNP
rs751950189 917 dbSNP
rs1324946159 919 dbSNP
rs766678660 920 dbSNP
rs201575851 921 dbSNP
rs763277783 922 dbSNP
rs773343294 923 dbSNP
rs1293950314 925 dbSNP
rs765492244 926 dbSNP
rs10441685 927 dbSNP
rs199991115 929 dbSNP
rs768717463 930 dbSNP
rs746904340 931 dbSNP
rs1470245106 932 dbSNP
rs1042864491 935 dbSNP
rs1406058406 942 dbSNP
rs775450547 951 dbSNP
rs1156868813 953 dbSNP
rs1473256144 954 dbSNP
rs199818206 956 dbSNP
rs1467060376 958 dbSNP
rs71521284 970 dbSNP
rs778499991 978 dbSNP
rs35921814 979 dbSNP
rs1440372481 984 dbSNP
rs534657208 987 dbSNP
rs756924613 989 dbSNP
rs748763882 990 dbSNP
rs147165051 993 dbSNP
rs1339374 994 dbSNP
rs747714583 997 dbSNP
rs1280253838 998 dbSNP
rs752108004 1003 dbSNP
rs766836308 1004 dbSNP
rs778711357 1007 dbSNP
rs1201056779 1008 dbSNP
rs758752401 1010 dbSNP
rs754479840 1013 dbSNP
rs753385503 1020 dbSNP
rs750784999 1022 dbSNP
rs766597639 1023 dbSNP
rs879031515 1024 dbSNP
rs779751434 1026 dbSNP
rs1385008304 1027 dbSNP
rs151243859 1029 dbSNP
rs756504155 1032 dbSNP
rs1369903344 1035 dbSNP
rs374125478 1039 dbSNP
rs764221631 1040 dbSNP
rs1247832704 1041 dbSNP
rs1207353582 1043 dbSNP
rs1473216303 1050 dbSNP
rs1181359594 1051 dbSNP
rs371820543 1061 dbSNP
rs147969979 1066 dbSNP
rs144841450 1067 dbSNP
rs149423190 1069 dbSNP
rs770497181 1070 dbSNP
rs1463884496 1071 dbSNP
rs1017031441 1073 dbSNP
rs748919859 1077 dbSNP
rs1273167016 1080 dbSNP
rs2275420 1083 dbSNP
rs769329190 1085 dbSNP
rs750964618 1091 dbSNP
rs756667454 1091 dbSNP
rs1306518942 1093 dbSNP
rs747649230 1094 dbSNP
rs1281978612 1095 dbSNP
rs145124138 1103 dbSNP
rs1221045548 1105 dbSNP
rs1279421700 1107 dbSNP
rs188379610 1111 dbSNP
rs141349284 1112 dbSNP
rs1163781590 1114 dbSNP
rs1428750330 1116 dbSNP
rs1389921710 1118 dbSNP
rs762343169 1119 dbSNP
rs1235858112 1123 dbSNP
rs1476673704 1127 dbSNP
rs367950013 1132 dbSNP
rs1198799247 1135 dbSNP
rs1449892773 1137 dbSNP
rs142365691 1140 dbSNP
rs1223459217 1142 dbSNP
rs764380931 1144 dbSNP
rs1174169430 1145 dbSNP
rs1425589796 1146 dbSNP
rs145670939 1157 dbSNP
rs565195727 1158 dbSNP
rs752815799 1161 dbSNP
rs767373279 1164 dbSNP
rs1362018692 1166 dbSNP
rs1400104171 1166 dbSNP
rs533224381 1166 dbSNP
rs1340457584 1167 dbSNP
rs1429235632 1169 dbSNP
rs1277034862 1170 dbSNP
rs374363949 1171 dbSNP
rs770806021 1172 dbSNP
rs1278480001 1173 dbSNP
rs1356045560 1175 dbSNP
rs1332287987 1177 dbSNP
rs202093963 1180 dbSNP
rs769419069 1181 dbSNP
rs747669830 1186 dbSNP
rs1170103064 1189 dbSNP
rs780613843 1191 dbSNP
rs772485080 1192 dbSNP
rs140449147 1200 dbSNP
rs373051260 1201 dbSNP
rs757681889 1204 dbSNP
rs1271111281 1210 dbSNP
rs1477587939 1213 dbSNP
rs1200298543 1219 dbSNP
rs895168551 1221 dbSNP
rs754250887 1231 dbSNP
rs778200263 1234 dbSNP
rs1307811799 1235 dbSNP
rs1157586380 1237 dbSNP
rs1277703156 1240 dbSNP
rs756350610 1242 dbSNP
rs1325656897 1244 dbSNP
rs1399505020 1247 dbSNP
rs752832075 1247 dbSNP
rs767597591 1255 dbSNP
rs1326079604 1260 dbSNP
rs3174266 1268 dbSNP
rs1309421362 1270 dbSNP
rs1436239376 1274 dbSNP
rs561444311 1275 dbSNP
rs776277883 1276 dbSNP
rs1355443102 1280 dbSNP
rs1333975083 1283 dbSNP
rs1413249989 1284 dbSNP
rs766218821 1285 dbSNP
rs1177790787 1287 dbSNP
rs762791127 1288 dbSNP
rs1409877318 1289 dbSNP
rs1179128801 1290 dbSNP
rs772932958 1292 dbSNP
rs764873272 1296 dbSNP
rs761413390 1299 dbSNP
rs1352490955 1300 dbSNP
rs41304745 1310 dbSNP
rs1263623023 1311 dbSNP
rs78043355 1314 dbSNP
rs945932818 1319 dbSNP
rs1290547717 1323 dbSNP
rs746472349 1324 dbSNP
rs376989197 1326 dbSNP
rs1239758361 1329 dbSNP
rs554125657 1330 dbSNP
rs374048020 1332 dbSNP
rs1378062480 1334 dbSNP
rs760576729 1340 dbSNP
rs151241381 1341 dbSNP
rs142704657 1342 dbSNP
rs772091722 1344 dbSNP
rs1324380306 1350 dbSNP
rs767735176 1355 dbSNP
rs762246010 1359 dbSNP
rs1386516302 1363 dbSNP
rs41312840 1364 dbSNP
rs751573425 1378 dbSNP
rs766349044 1381 dbSNP
rs758264689 1386 dbSNP
rs750249625 1391 dbSNP
rs751677353 1396 dbSNP
rs148911211 1397 dbSNP
rs147844073 1405 dbSNP
rs776387476 1407 dbSNP
rs1458027049 1408 dbSNP
rs1261962459 1411 dbSNP
rs763651309 1413 dbSNP
rs1025125926 1418 dbSNP
rs760290547 1419 dbSNP
rs1320599211 1422 dbSNP
rs763230921 1429 dbSNP
rs764290730 1429 dbSNP
rs1018877615 1435 dbSNP
rs1247747374 1438 dbSNP
rs774805907 1439 dbSNP
rs1316219971 1445 dbSNP
rs780282380 1451 dbSNP
rs1426352569 1453 dbSNP
rs1466498977 1464 dbSNP
rs771573288 1467 dbSNP
rs1291145884 1468 dbSNP
rs1454321289 1478 dbSNP
rs769906088 1479 dbSNP
rs749777866 1485 dbSNP
rs773737305 1489 dbSNP
rs1331020696 1493 dbSNP
rs1394623452 1494 dbSNP
rs368340247 1496 dbSNP
rs748516738 1497 dbSNP
rs1447583000 1500 dbSNP
rs748130756 1506 dbSNP
rs1187054801 1507 dbSNP
rs1339912517 1508 dbSNP
rs781532634 1510 dbSNP
rs1263203950 1523 dbSNP
rs1224213477 1525 dbSNP
rs1280038339 1526 dbSNP
rs768700325 1528 dbSNP
rs747115708 1533 dbSNP
rs1249394893 1535 dbSNP
rs779956527 1538 dbSNP
rs1306137889 1540 dbSNP
rs879125750 1542 dbSNP
rs374274041 1544 dbSNP
rs750409092 1555 dbSNP
rs200002081 1559 dbSNP
rs1349829760 1560 dbSNP
rs757111794 1560 dbSNP
rs1331572465 1561 dbSNP
rs753563292 1562 dbSNP
rs903842511 1563 dbSNP
rs200901870 1565 dbSNP
rs1168207031 1568 dbSNP
rs540631282 1569 dbSNP
rs1484418301 1570 dbSNP
rs201836449 1570 dbSNP
rs752285646 1574 dbSNP
rs574840948 1579 dbSNP
rs1426418074 1581 dbSNP
rs1228823470 1589 dbSNP
rs759097940 1591 dbSNP
rs1355351195 1600 dbSNP
rs760477591 1602 dbSNP
rs773919247 1603 dbSNP
rs1450131149 1606 dbSNP
rs370759330 1609 dbSNP
rs909674270 1611 dbSNP
rs762249879 1612 dbSNP
rs1253488300 1614 dbSNP
rs1228762207 1619 dbSNP
rs377011794 1620 dbSNP
rs776791852 1622 dbSNP
rs1010088209 1627 dbSNP
rs183547206 1628 dbSNP
rs768953113 1636 dbSNP
rs756933620 1648 dbSNP
rs1413044404 1659 dbSNP
rs746141126 1664 dbSNP
rs145508148 1665 dbSNP
rs1399323408 1670 dbSNP
rs951079458 1671 dbSNP
rs777521919 1672 dbSNP
rs569771089 1673 dbSNP
rs768872766 1686 dbSNP
rs1416590015 1688 dbSNP
rs140191998 1689 dbSNP
rs1218180276 1695 dbSNP
rs976422306 1698 dbSNP
rs933078840 1699 dbSNP
rs1417505574 1700 dbSNP
rs1260142876 1706 dbSNP
rs560960553 1709 dbSNP
rs1233566042 1711 dbSNP
rs539384481 1719 dbSNP
rs900221073 1733 dbSNP
rs1039187472 1739 dbSNP
rs1018515957 1740 dbSNP
rs570715704 1741 dbSNP
rs941734146 1753 dbSNP
rs1361215957 1758 dbSNP
rs1419076916 1759 dbSNP
rs547036236 1761 dbSNP
rs190298739 1762 dbSNP
rs1387143382 1768 dbSNP
rs908853662 1773 dbSNP
rs1368407758 1778 dbSNP
rs749452107 1781 dbSNP
rs929517278 1796 dbSNP
rs1352302169 1799 dbSNP
rs780386606 1801 dbSNP
rs1489713931 1812 dbSNP
rs992291177 1816 dbSNP
rs567684657 1817 dbSNP
rs959527842 1822 dbSNP
rs1020374925 1823 dbSNP
rs1010278315 1835 dbSNP
rs371236640 1835 dbSNP
rs895879846 1835 dbSNP
rs543099727 1838 dbSNP
rs1418612454 1845 dbSNP
rs1156931282 1846 dbSNP
rs1351560201 1851 dbSNP
rs1458336526 1853 dbSNP
rs1033801425 1862 dbSNP
rs1325050122 1866 dbSNP
rs1282037584 1882 dbSNP
rs185634338 1883 dbSNP
rs12350788 1887 dbSNP
rs1280803690 1893 dbSNP
rs562976692 1898 dbSNP
rs968098851 1911 dbSNP
rs1221577253 1917 dbSNP
rs1021350235 1919 dbSNP
rs1010121613 1942 dbSNP
rs891679492 1943 dbSNP
rs750844181 1944 dbSNP
rs1273007547 1951 dbSNP
rs1200871512 1960 dbSNP
rs941228296 1960 dbSNP
rs1239025611 1961 dbSNP
rs781519453 1962 dbSNP
rs546371252 1980 dbSNP
rs1369800164 1981 dbSNP
rs1416049131 1982 dbSNP
rs752219256 1986 dbSNP
rs1164101624 1988 dbSNP
rs1046893484 1996 dbSNP
rs1467019264 1999 dbSNP
rs1038807282 2007 dbSNP
rs1353572192 2010 dbSNP
rs1439549111 2014 dbSNP
rs1462284457 2028 dbSNP
rs1304142570 2030 dbSNP
rs1352033948 2033 dbSNP
rs1157520884 2038 dbSNP
rs1400669643 2039 dbSNP
rs767325274 2040 dbSNP
rs941753099 2049 dbSNP
rs566927925 2063 dbSNP
rs1047396207 2064 dbSNP
rs1259095270 2066 dbSNP
rs1437531995 2067 dbSNP
rs554094810 2068 dbSNP
rs1202656621 2069 dbSNP
rs1239336434 2071 dbSNP
rs1483631915 2073 dbSNP
rs942362770 2078 dbSNP
rs1255320219 2080 dbSNP
rs10972553 2082 dbSNP
rs577887842 2084 dbSNP
rs574899778 2085 dbSNP
rs1418517547 2086 dbSNP
rs1194555356 2089 dbSNP
rs1407911908 2091 dbSNP
rs1177825830 2093 dbSNP
rs1359341943 2096 dbSNP
rs554972846 2098 dbSNP
rs764666830 2101 dbSNP
rs1310483104 2103 dbSNP
rs1354178133 2109 dbSNP
rs918213795 2111 dbSNP
rs968902494 2112 dbSNP
rs1056721833 2124 dbSNP
rs1020427209 2125 dbSNP
rs938186520 2131 dbSNP
rs1281031887 2133 dbSNP
rs988908539 2135 dbSNP
rs1210267818 2139 dbSNP
rs759114745 2141 dbSNP
rs1489266759 2143 dbSNP
rs1194253557 2150 dbSNP
rs778835864 2150 dbSNP
rs1474324430 2151 dbSNP
rs556416690 2151 dbSNP
rs1192645928 2155 dbSNP
rs1425453851 2156 dbSNP
rs960141046 2162 dbSNP
rs1035758043 2164 dbSNP
rs1285671351 2167 dbSNP
rs979557477 2178 dbSNP
rs1001978453 2184 dbSNP
rs1231440116 2186 dbSNP
rs1319581662 2189 dbSNP
rs1249997975 2191 dbSNP
rs766773911 2191 dbSNP
rs905857752 2198 dbSNP
rs1016646589 2202 dbSNP
rs1276912211 2208 dbSNP
rs1372070531 2212 dbSNP
rs1890593 2240 dbSNP
rs1330340041 2241 dbSNP
rs888343021 2245 dbSNP
rs1217384319 2246 dbSNP
rs1046945310 2247 dbSNP
rs1445156795 2249 dbSNP
rs1223570079 2254 dbSNP
rs1247062957 2268 dbSNP
rs1303665451 2269 dbSNP
rs913910450 2275 dbSNP
rs575676629 2277 dbSNP
rs955372342 2278 dbSNP
rs1381723466 2284 dbSNP
rs10441726 2287 dbSNP
rs539616894 2288 dbSNP
rs1157413939 2289 dbSNP
rs1370132603 2291 dbSNP
rs997370660 2300 dbSNP
rs964595315 2301 dbSNP
rs1326019273 2306 dbSNP
rs1017827693 2307 dbSNP
rs1440502345 2317 dbSNP
rs1301567678 2336 dbSNP
rs1379313777 2337 dbSNP
rs1239883048 2341 dbSNP
rs139482335 2345 dbSNP
rs773024410 2346 dbSNP
rs910891671 2350 dbSNP
rs1161035213 2358 dbSNP
rs1047513063 2361 dbSNP
rs1229800982 2362 dbSNP
rs1432917661 2362 dbSNP
rs1394596132 2368 dbSNP
rs978809795 2375 dbSNP
rs993198601 2376 dbSNP
rs947652456 2377 dbSNP
rs553665569 2382 dbSNP
rs1056754190 2387 dbSNP
rs1461256046 2388 dbSNP
rs988960769 2390 dbSNP
rs765694121 2392 dbSNP
rs10441725 2393 dbSNP
rs1328321126 2395 dbSNP
rs1334036143 2400 dbSNP
rs1265236420 2402 dbSNP
rs1208702184 2410 dbSNP
rs1485041666 2411 dbSNP
rs776671223 2412 dbSNP
rs946824322 2417 dbSNP
rs768850101 2421 dbSNP
rs1339736148 2424 dbSNP
rs1194840605 2425 dbSNP
rs1247862831 2426 dbSNP
rs988172028 2428 dbSNP
rs1187970511 2434 dbSNP
rs1258848113 2436 dbSNP
rs919921436 2440 dbSNP
rs182490154 2442 dbSNP
rs1163314326 2445 dbSNP
rs34713479 2454 dbSNP
rs368772245 2457 dbSNP
rs1426192500 2460 dbSNP
rs922582271 2468 dbSNP
rs200165668 2485 dbSNP
rs975986726 2489 dbSNP
rs1167581182 2493 dbSNP
rs547766862 2501 dbSNP
rs964953735 2509 dbSNP
rs1294488559 2511 dbSNP
rs952637758 2514 dbSNP
rs1025549936 2517 dbSNP
rs1327614552 2520 dbSNP
rs1214337084 2521 dbSNP
rs994041769 2528 dbSNP
rs1412849127 2534 dbSNP
rs1017442605 2535 dbSNP
rs780113267 2538 dbSNP
rs376857926 2540 dbSNP
rs1041237476 2542 dbSNP
rs10441724 2544 dbSNP
rs1249270159 2550 dbSNP
rs1346615723 2551 dbSNP
rs1211057005 2562 dbSNP
rs1278991191 2566 dbSNP
rs1485654607 2572 dbSNP
rs1186400005 2573 dbSNP
rs1264415281 2575 dbSNP
rs889503463 2576 dbSNP
rs1192838383 2587 dbSNP
rs1042756629 2596 dbSNP
rs1467762642 2601 dbSNP
rs951908237 2603 dbSNP
rs1413502380 2605 dbSNP
rs1374891542 2621 dbSNP
rs568929247 2631 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HEK293S
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in GSM1084040. RNA binding protein: AGO2. Condition:CLIP_noarsenite_rep1 HITS-CLIP data was present in GSM1084064. RNA binding protein: AGO2. Condition:CLIP_noemetine_AbnovaAb HITS-CLIP data was present in GSM1084079. RNA binding protein: AGO2. Condition:CLIP_hippuristanol_rep2_AbnovaAb ...

- Karginov FV; Hannon GJ, 2013, Genes & development.

Article - Karginov FV; Hannon GJ
- Genes & development, 2013
When adapting to environmental stress, cells attenuate and reprogram their translational output. In part, these altered translation profiles are established through changes in the interactions between RNA-binding proteins and mRNAs. The Argonaute 2 (Ago2)/microRNA (miRNA) machinery has been shown to participate in stress-induced translational up-regulation of a particular mRNA, CAT-1; however, a detailed, transcriptome-wide understanding of the involvement of Ago2 in the process has been lacking. Here, we profiled the overall changes in Ago2-mRNA interactions upon arsenite stress by cross-linking immunoprecipitation (CLIP) followed by high-throughput sequencing (CLIP-seq). Ago2 displayed a significant remodeling of its transcript occupancy, with the majority of 3' untranslated region (UTR) and coding sequence (CDS) sites exhibiting stronger interaction. Interestingly, target sites that were destined for release from Ago2 upon stress were depleted in miRNA complementarity signatures, suggesting an alternative mode of interaction. To compare the changes in Ago2-binding patterns across transcripts with changes in their translational states, we measured mRNA profiles on ribosome/polysome gradients by RNA sequencing (RNA-seq). Increased Ago2 occupancy correlated with stronger repression of translation for those mRNAs, as evidenced by a shift toward lighter gradient fractions upon stress, while release of Ago2 was associated with the limited number of transcripts that remained translated. Taken together, these data point to a role for Ago2 and the mammalian miRNAs in mediating the translational component of the stress response.
LinkOut: [PMID: 23824327]
CLIP-seq Support 1 for dataset GSM1084040
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_noarsenite_rep1
Location of target site ENST00000343259.3 | 3UTR | AAGCCAAGGUGGGUGGAUCACCUGAGGUCAGGAGUU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM1084064
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_noemetine_AbnovaAb
Location of target site ENST00000343259.3 | 3UTR | AAGCCAAGGUGGGUGGAU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
CLIP-seq Support 3 for dataset GSM1084079
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_hippuristanol_rep2_AbnovaAb
Location of target site ENST00000343259.3 | 3UTR | GGAAGCCAAGGUGGGUGGAU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
194 hsa-miR-640 Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT097121 TNPO1 transportin 1 2 2
MIRT115090 ARIH1 ariadne RBR E3 ubiquitin protein ligase 1 2 4
MIRT204603 HSPE1-MOB4 HSPE1-MOB4 readthrough 2 8
MIRT204634 MOB4 MOB family member 4, phocein 2 8
MIRT344451 MTRNR2L1 MT-RNR2-like 1 2 2
MIRT405772 EIF5 eukaryotic translation initiation factor 5 2 2
MIRT445876 SENP6 SUMO1/sentrin specific peptidase 6 2 2
MIRT497418 FAM46A family with sequence similarity 46 member A 2 2
MIRT504394 HMX2 H6 family homeobox 2 2 4
MIRT504691 SLCO2B1 solute carrier organic anion transporter family member 2B1 2 8
MIRT512386 MTRNR2L3 MT-RNR2-like 3 2 6
MIRT513003 MAN1A2 mannosidase alpha class 1A member 2 2 2
MIRT513084 USP9X ubiquitin specific peptidase 9, X-linked 2 2
MIRT519122 ALDH2 aldehyde dehydrogenase 2 family (mitochondrial) 2 2
MIRT523836 F2RL1 F2R like trypsin receptor 1 2 2
MIRT565356 TMCC1 transmembrane and coiled-coil domain family 1 2 2
MIRT575895 Dis3 DIS3 homolog, exosome endoribonuclease and 3'-5' exoribonuclease 2 3
MIRT576894 Poteg POTE ankyrin domain family, member G 2 2
MIRT613780 RPS6 ribosomal protein S6 2 2
MIRT613934 POLR3A RNA polymerase III subunit A 2 2
MIRT614348 LOH12CR1 BLOC-1 related complex subunit 5 2 2
MIRT614534 NOA1 nitric oxide associated 1 2 2
MIRT617019 ZBTB8B zinc finger and BTB domain containing 8B 2 2
MIRT618247 MANEAL mannosidase endo-alpha like 2 2
MIRT619051 TTC4 tetratricopeptide repeat domain 4 2 2
MIRT619442 ZNF517 zinc finger protein 517 2 2
MIRT619723 FPR2 formyl peptide receptor 2 2 2
MIRT620179 TRIM72 tripartite motif containing 72 2 2
MIRT620370 ANKRD62 ankyrin repeat domain 62 2 2
MIRT621263 RTN2 reticulon 2 2 2
MIRT621463 APOH apolipoprotein H 2 2
MIRT621571 ZBTB43 zinc finger and BTB domain containing 43 2 2
MIRT621683 TSPYL1 TSPY like 1 2 2
MIRT622866 PDE7A phosphodiesterase 7A 2 2
MIRT624669 ARHGEF39 Rho guanine nucleotide exchange factor 39 2 2
MIRT625607 ZNF84 zinc finger protein 84 2 2
MIRT626111 IL23R interleukin 23 receptor 2 2
MIRT628380 CACNB2 calcium voltage-gated channel auxiliary subunit beta 2 2 2
MIRT628553 MELK maternal embryonic leucine zipper kinase 2 2
MIRT628671 C2orf72 chromosome 2 open reading frame 72 2 2
MIRT628747 TRPV2 transient receptor potential cation channel subfamily V member 2 2 2
MIRT628776 TMEM154 transmembrane protein 154 2 2
MIRT628918 ZNF430 zinc finger protein 430 2 2
MIRT629174 ALDOA aldolase, fructose-bisphosphate A 2 2
MIRT629209 C12orf66 chromosome 12 open reading frame 66 2 2
MIRT629267 SLC5A8 solute carrier family 5 member 8 2 2
MIRT629498 AS3MT arsenite methyltransferase 2 2
MIRT629665 USP1 ubiquitin specific peptidase 1 2 2
MIRT629760 STK25 serine/threonine kinase 25 2 2
MIRT630899 GATAD1 GATA zinc finger domain containing 1 2 2
MIRT631105 SLC15A2 solute carrier family 15 member 2 2 2
MIRT631112 ATCAY ATCAY, caytaxin 2 2
MIRT631450 DLEU1 deleted in lymphocytic leukemia 1 (non-protein coding) 2 2
MIRT631505 FFAR4 free fatty acid receptor 4 2 2
MIRT631580 ITGAL integrin subunit alpha L 2 2
MIRT631836 CMBL carboxymethylenebutenolidase homolog 2 2
MIRT632342 SWSAP1 SWIM-type zinc finger 7 associated protein 1 2 2
MIRT633214 ZNF584 zinc finger protein 584 2 2
MIRT633223 ZNF43 zinc finger protein 43 2 2
MIRT633480 ARIH2OS ariadne RBR E3 ubiquitin protein ligase 2 opposite strand 2 2
MIRT633511 LRRC27 leucine rich repeat containing 27 2 2
MIRT633615 CWF19L1 CWF19 like 1, cell cycle control (S. pombe) 2 2
MIRT633652 SLC28A1 solute carrier family 28 member 1 2 2
MIRT633677 ZNF576 zinc finger protein 576 2 2
MIRT634196 TMOD2 tropomodulin 2 2 4
MIRT634388 PLSCR1 phospholipid scramblase 1 2 2
MIRT635817 OPA3 OPA3, outer mitochondrial membrane lipid metabolism regulator 2 2
MIRT635962 TTC31 tetratricopeptide repeat domain 31 2 2
MIRT636114 YPEL1 yippee like 1 2 2
MIRT636164 TIMM8A translocase of inner mitochondrial membrane 8A 2 2
MIRT636768 CLUAP1 clusterin associated protein 1 2 2
MIRT637092 CXorf23 BCLAF1 and THRAP3 family member 3 2 2
MIRT637316 FAM9B family with sequence similarity 9 member B 2 2
MIRT637540 CHST6 carbohydrate sulfotransferase 6 2 2
MIRT637628 ZNF431 zinc finger protein 431 2 2
MIRT637826 CACNG8 calcium voltage-gated channel auxiliary subunit gamma 8 2 2
MIRT637945 IVD isovaleryl-CoA dehydrogenase 2 2
MIRT637968 IRF1 interferon regulatory factor 1 2 2
MIRT638321 RNF11 ring finger protein 11 2 2
MIRT638386 RAB11FIP1 RAB11 family interacting protein 1 2 2
MIRT639244 CRK CRK proto-oncogene, adaptor protein 2 2
MIRT642608 APOPT1 apoptogenic 1, mitochondrial 2 2
MIRT642793 SLC1A5 solute carrier family 1 member 5 2 2
MIRT643847 LACTB lactamase beta 2 4
MIRT644705 ZNF321P zinc finger protein 321, pseudogene 2 2
MIRT645148 DIS3 DIS3 homolog, exosome endoribonuclease and 3'-5' exoribonuclease 2 3
MIRT646671 CCDC69 coiled-coil domain containing 69 2 2
MIRT647780 ASB8 ankyrin repeat and SOCS box containing 8 2 2
MIRT648554 WDR92 WD repeat domain 92 2 2
MIRT648990 MRPL49 mitochondrial ribosomal protein L49 2 2
MIRT649099 KCNMB1 potassium calcium-activated channel subfamily M regulatory beta subunit 1 2 2
MIRT650141 ZNF426 zinc finger protein 426 2 2
MIRT650791 GSR glutathione-disulfide reductase 2 2
MIRT654967 PLEKHA2 pleckstrin homology domain containing A2 2 2
MIRT655099 PHLDA3 pleckstrin homology like domain family A member 3 2 2
MIRT655516 PAG1 phosphoprotein membrane anchor with glycosphingolipid microdomains 1 2 2
MIRT656289 METTL14 methyltransferase like 14 2 2
MIRT656497 MAP3K9 mitogen-activated protein kinase kinase kinase 9 2 2
MIRT657074 JPH2 junctophilin 2 2 2
MIRT657314 HOOK3 hook microtubule tethering protein 3 2 2
MIRT657419 HIF1AN hypoxia inducible factor 1 alpha subunit inhibitor 2 4
MIRT659032 DHTKD1 dehydrogenase E1 and transketolase domain containing 1 2 2
MIRT659535 CHCHD5 coiled-coil-helix-coiled-coil-helix domain containing 5 2 2
MIRT661532 NWD1 NACHT and WD repeat domain containing 1 2 2
MIRT662029 FUT2 fucosyltransferase 2 2 2
MIRT663206 DARS2 aspartyl-tRNA synthetase 2, mitochondrial 2 2
MIRT663357 ORAI2 ORAI calcium release-activated calcium modulator 2 2 2
MIRT663557 CCR6 C-C motif chemokine receptor 6 2 2
MIRT663650 POLM DNA polymerase mu 2 2
MIRT663694 ABHD17B abhydrolase domain containing 17B 2 2
MIRT664370 CYB5A cytochrome b5 type A 2 2
MIRT664783 LIAS lipoic acid synthetase 2 4
MIRT665561 TXNL1 thioredoxin like 1 2 2
MIRT665950 TAOK1 TAO kinase 1 2 2
MIRT667338 MSANTD3 Myb/SANT DNA binding domain containing 3 2 2
MIRT667804 ITIH5 inter-alpha-trypsin inhibitor heavy chain family member 5 2 2
MIRT668804 CYP20A1 cytochrome P450 family 20 subfamily A member 1 2 2
MIRT669470 ARPC2 actin related protein 2/3 complex subunit 2 2 2
MIRT669599 AGO3 argonaute 3, RISC catalytic component 2 2
MIRT669806 STOML1 stomatin like 1 2 2
MIRT669944 FBXL2 F-box and leucine rich repeat protein 2 2 2
MIRT670292 RBBP4 RB binding protein 4, chromatin remodeling factor 2 2
MIRT670381 EMP2 epithelial membrane protein 2 2 2
MIRT670481 DCUN1D2 defective in cullin neddylation 1 domain containing 2 2 2
MIRT670531 KIF1C kinesin family member 1C 2 4
MIRT670565 GLTP glycolipid transfer protein 2 2
MIRT670603 NPHP1 nephrocystin 1 2 2
MIRT670880 CYTIP cytohesin 1 interacting protein 2 2
MIRT670931 LIPG lipase G, endothelial type 2 2
MIRT671261 MTRNR2L5 MT-RNR2-like 5 2 2
MIRT671794 FLVCR1 feline leukemia virus subgroup C cellular receptor 1 2 2
MIRT671897 GBP4 guanylate binding protein 4 2 2
MIRT672000 SLC35F6 solute carrier family 35 member F6 2 4
MIRT672074 KIR3DX1 killer cell immunoglobulin like receptor, three Ig domains X1 2 2
MIRT672319 C9orf3 chromosome 9 open reading frame 3 2 2
MIRT672853 C22orf29 retrotransposon Gag like 10 2 2
MIRT673395 WNT7B Wnt family member 7B 2 2
MIRT673537 DEGS1 delta 4-desaturase, sphingolipid 1 2 2
MIRT674285 ZNF724P zinc finger protein 724 2 2
MIRT674494 TIRAP TIR domain containing adaptor protein 2 2
MIRT675460 NUBPL nucleotide binding protein like 2 2
MIRT675569 TRIP11 thyroid hormone receptor interactor 11 2 2
MIRT676068 TIMM50 translocase of inner mitochondrial membrane 50 2 2
MIRT676254 PBOV1 prostate and breast cancer overexpressed 1 2 2
MIRT676377 SEC24D SEC24 homolog D, COPII coat complex component 2 2
MIRT676758 SNX2 sorting nexin 2 2 2
MIRT676773 NPHS1 NPHS1, nephrin 2 2
MIRT676874 ENSA endosulfine alpha 2 2
MIRT676918 KLHDC8A kelch domain containing 8A 2 2
MIRT676944 S1PR3 sphingosine-1-phosphate receptor 3 2 2
MIRT676957 HFE hemochromatosis 2 2
MIRT676967 RNF19B ring finger protein 19B 2 2
MIRT676972 ZNF708 zinc finger protein 708 2 2
MIRT677042 ZNF34 zinc finger protein 34 2 2
MIRT677070 VMAC vimentin type intermediate filament associated coiled-coil protein 2 2
MIRT677093 MFSD11 major facilitator superfamily domain containing 11 2 4
MIRT677134 P2RX7 purinergic receptor P2X 7 2 2
MIRT677179 ZNF786 zinc finger protein 786 2 2
MIRT677228 C15orf40 chromosome 15 open reading frame 40 2 2
MIRT677320 PIGO phosphatidylinositol glycan anchor biosynthesis class O 2 2
MIRT677455 PDLIM3 PDZ and LIM domain 3 2 2
MIRT677809 MRPS10 mitochondrial ribosomal protein S10 2 2
MIRT677937 ZNF519 zinc finger protein 519 2 2
MIRT678063 UBN2 ubinuclein 2 2 4
MIRT678072 EIF2A eukaryotic translation initiation factor 2A 2 2
MIRT678252 FXN frataxin 2 2
MIRT678315 FBLIM1 filamin binding LIM protein 1 2 2
MIRT678367 XIAP X-linked inhibitor of apoptosis 2 4
MIRT678372 RNF115 ring finger protein 115 2 2
MIRT678410 ANKRD36 ankyrin repeat domain 36 2 2
MIRT678518 ZNF347 zinc finger protein 347 2 2
MIRT678566 CDK4 cyclin dependent kinase 4 2 2
MIRT678580 PPP1R3B protein phosphatase 1 regulatory subunit 3B 2 2
MIRT678820 PDE6A phosphodiesterase 6A 2 2
MIRT678917 XPOT exportin for tRNA 2 2
MIRT679217 MAN2A2 mannosidase alpha class 2A member 2 2 2
MIRT679437 C19orf52 translocase of inner mitochondrial membrane 29 2 2
MIRT679595 HILPDA hypoxia inducible lipid droplet associated 2 2
MIRT679755 TLR6 toll like receptor 6 2 2
MIRT679800 APOBEC3A apolipoprotein B mRNA editing enzyme catalytic subunit 3A 2 2
MIRT680057 CD96 CD96 molecule 2 2
MIRT680116 CCDC30 coiled-coil domain containing 30 2 4
MIRT680181 ZNF554 zinc finger protein 554 2 2
MIRT680439 WDR12 WD repeat domain 12 2 2
MIRT680789 ZNF578 zinc finger protein 578 2 2
MIRT692464 APEX2 apurinic/apyrimidinic endodeoxyribonuclease 2 2 2
MIRT702952 HIP1 huntingtin interacting protein 1 2 2
MIRT706016 ZSCAN2 zinc finger and SCAN domain containing 2 2 2
MIRT706032 F2R coagulation factor II thrombin receptor 2 2
MIRT706135 MTRNR2L10 MT-RNR2-like 10 2 2
MIRT706394 HAS2 hyaluronan synthase 2 2 2
MIRT713293 DCP2 decapping mRNA 2 2 2
MIRT716583 BRAP BRCA1 associated protein 2 2
MIRT720433 C19orf47 chromosome 19 open reading frame 47 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-640 Paclitaxel 36314 NSC125973 approved resistant High Ovarian Cancer tissue and cell line (SKOV3)
hsa-miR-640 Cetuximab resistant High Colon Cancer cell line
hsa-miR-640 Trametinib 11707110 NSC758246 approved resistant High Melanoma cell line (WM266) (1uM)
hsa-miR-640 Vemurafenib 42611257 NSC761431 approved resistant High Melanoma cell line (WM266) (1uM)
hsa-miR-640 Mitoxantrone 4212 NSC279836 approved resistant High Breast Cancer cell line (BT-20, BT-474, BT-549, CAMA-1, HCC1143, HCC1395, HCC1569, HCC1806, HCC-1937, HCC1954, HCC202, HCC38, HCC70, Hs578T, MCF-7, MDA-MB-175VII, MDA-MB-231, MDA-MB-361, MDA-MB-415, MDA-MB-436, MDA-MB-468, SKBR3, T47D, UACC812, EVSA-T, MPE-600 , SK-BR-
hsa-miR-640 Sorafenib 216239 NSC747971 approved sensitive Low Clear Cell Renal Cell Carcinoma cell line (786-O)
hsa-mir-640 Paclitaxel 36314 NSC125973 approved sensitive cell line (A2780)
hsa-mir-640 Cisplatin 5460033 NSC119875 approved sensitive cell line (A2780)
hsa-mir-640 Cisplatin 5460033 NSC119875 approved resistant cell line (BxPC3)
hsa-miR-640 Sunitinib 5329102 NSC750690 approved resistant tissue (CardB)
hsa-miR-640 Paclitaxel 36314 NSC125973 approved sensitive cell line (SKOV3)
hsa-miR-640 Tamoxifen 2733525 NSC180973 approved sensitive cell line (TamR8)
hsa-miR-640 Oxaliplatin 6857599 NSC266046 approved sensitive cell line (IGROV-1)
hsa-miR-640 Cisplatin 5460033 NSC119875 approved sensitive cell line (IGROV-1)
hsa-miR-640 Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)

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