miRTarBase - #MIRT624840


—
pre-miRNA Information
pre-miRNA hsa-mir-4793   
Genomic Coordinates chr3: 48644194 - 48644280
Description Homo sapiens miR-4793 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-4793-3p
Sequence 58| UCUGCACUGUGAGUUGGCUGGCU |80
Evidence Experimental
Experiments Illumina
DRVs in miRNA
Mutant ID Mutant Position Mutant Source
COSM5899925 14 COSMIC
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs779602935 6 dbSNP
rs757908486 7 dbSNP
rs1422853760 15 dbSNP
rs377721296 23 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol ACAP2   
Synonyms CENTB2, CNT-B2
Description ArfGAP with coiled-coil, ankyrin repeat and PH domains 2
Transcript NM_012287   
Expression
Putative miRNA Targets on ACAP2
3'UTR of ACAP2
(miRNA target sites are highlighted)		 
>ACAP2|NM_012287|3'UTR
   1 ATTTTTTTAAAAATGGGAAAATATGAAATCTGGTGACCCCCTAATGTATACAGCTAAAAAATCACAATTTTTTTACTGCT
  81 TTAATTCTACTTAATTTTGGTAGATATTGAATGGCTTGGAAAAGAGGTACCCATTCATATATTTATAAATTAAAACATAG
 161 TTATCTAGTAGTAGGAGAGGAACCTAGTTTAGGACCTCTTTTATTAAAAAAGCCTATTTAAAGGGCTATTTCTGTAGACA
 241 GAAGTTCAGTCTAGATTTAGGCCATCTCTAGGTTACAAGATGATAGGAGGTTAGACAAAAGTGATTCTTTTGCCAATGGG
 321 TGGTGGCATTGATTTTTTTCCTCCATGCATCTTGCCCAGGATCACTCAGTCAAGCATGTCTTCATCAAGTGGAAGCCAAC
 401 TGTCCTGCCTGCCTCAAGAATATGTGTTTTCTTTAGCTTCCCTGAGGCTTTTTGGTGGTTCAGAAATAGGTGTGTGTGTT
 481 GATGTGTTTTTGGTAACCTAGCTTTCATACACATAATATATGATTTATTAGAACTAGAGAATGTGTTTTCCCCGTTTGTT
 561 CATAAATGCGGTCGGTTATACTTCTTAGGTGACAGGTTATTGTCCAGTACTTTAATGTATGTATGTATAATGGCTGTACA
 641 GGTAGACCATAATTCAGTCCTTTAGATTTATTTTATGCAGCAAAAAGAAGCTCTTTTTTTTTTTTAATCACAAAAAAAAA
 721 CCCCAGTTCAAAATGTGTAGTTCTTCATTGTTGGGTTGATTCCCCAAAACCTTGACAGATGTATCGATGGAATAAAAGTA
 801 TGTTTTAAAGGTTACTTGAATGTCACAAAATTATGCCTTCATCAAAACTTTAAAGGAAAAATCAATTTATAAAATCATGT
 881 AGGCCATTTTTATATTTGAAATTTGTCCTTTTAAAGATAGTTTTGCTGTTGCTCCTAGTGAAAGAAAAATCTCTGTACAA
 961 AGGAGAAAAAGAACCCCACTTATTCTTAGTTAATACTAAAATATATAGCAATAAATTGCTGTTTATTTTTTCTACATCTA
1041 TTTTGTGTACTTGTACACAGTGTACATTCTTTTAAATTATATCGTGTATATAGCTTTAGTATTCGGTTACATGATTCACA
1121 GACCCCTGAATTCCAAAATATTATGGATAAACATTACCATTTATATGCTACAAATTAGTCTGATTCCATCTTTGAAAATG
1201 TCTTAAAGTATAAAATAATTAATTTGCTTTTTTTTTTTTTTTTTCCCGAGATGGCGTCTTGCTGTGTCACCCAGGCTGGA
1281 GTGCAGTGGCACGATCTCAGCTCACTGCAGCCTCCTCCTCTTGGGTTCAAGCAATTCTCCTGCCTCAGCCTCCCGAGTAG
1361 CTGGGACTACAGGCACCCGCCACCATTCCGAGCTAATTTCTATATTTTTAGTAAAGACGGGTTTCACCATTTTGGCCAGG
1441 TTGGTCTCGAACTCCTGACCTCAGGTGATCAGCCTGCTTTAGCCTCCCAGAGTGCTGGGATTACAGGCGTGAGCCACCGC
1521 ACCCAGCCTAATTTGCCTTTTGATTCCTTCCCATTGTTGTCAACAATTAAGTCTATTCTTCTTTTAGAAATTATATGTAA
1601 ATGATATTATTGATACTCTTTCTAAATAAGAGGTTTTAAAATATATAAAAACTTTATGATCCAATTATAGATAAATTTTC
1681 TAACATTTCCCAGTCACTAGGGTTTTATAAGTTGATTAAACATCAAATCAGAATCTAGCCAAGCAGGAATTATATTGAAA
1761 TAAGTTCACATTACAGAAAAGGTTCCATAATTTGGCCAAACTGCATGCATGTAATGCTTATTTAGTAATGGTCACTGTAT
1841 GTTAGATAAGGATAAAAATATATTTGTGAATTACTTCTGAGGAAATGCTAACTTCCACAGCATTGTATTTAATTATAACA
1921 ATAACAGGAACATTAAATCTTTATCTTTGCTGTTTCACCTCAAAGTCATAGATCATCTGGCTTTTTAGGCACCTTCACTA
2001 AAGGCAAAAATCTGATTTGTAGTTTTTATTAGCATGTACCTTGAAATTATTTGACCAAGAAGCTCAAAGAAAAGAAGTAC
2081 GTTAAAGAAAAAGAAAAAACCTCACTTTTCCTTTATAGTGTCCCTTCCTGTTTTAATTCCTAAAGATCCTGACTTTTATC
2161 TGAGGAAGTCTAGGTAGTTTTCCTTTTGGATCTGGCCATTGGTGCGTGTTTCATTCAGATCACCTCTGGAATCTCTGTGG
2241 TTGTGAAGGCAATTCCTTATGAGACTCTTGCCTCCTGTGGCTTACGTGATGAATTGTTAATATGGCAGTAATTAATTAGT
2321 ATCTACTTAAATTTAGTGGTCAGAAATGTATTTGAAGTGCCTTAAAGATGATCATGGTTCAGAATATCTTCAGAGAAAGC
2401 AAAATCTTTAATATTGCAGGGAGCCTAGCAATACAAGTACACATTTCTGTGGCTTGATTTCTTGAATATGCTGAGACCCA
2481 ATTTGGACTACATTTGGCAGAAATGATGGAGTAAACAGCAAGGCTTTAAATTAAATTAATAGTTACAAGGTAGGTTGGCT
2561 CTTAGGTGAATTTAGCCATGTCAACTAATAGCTTTTATATGGTATGTAACAAATCTGAATTATGTTATGCTGTGAATTAT
2641 TCAGTGCATTATAAGAAATCTTAGTTAATCATGCTTTTGGGCTTCATTAGTCAATGTGATTGGCCTTTTATTTTCTTTCC
2721 ATAACTTATCTGCTATTATTAGTTTCTTATTCCTTATTATTAATCTGTTAGCTCATTATCATTAGCTTACTAACTTGAAA
2801 GTTAGATTAATATCAAAATAAGAATAGCAGCACTATGAAGAGTTAATAAAATGCAATTTCATGTTAGAGCTAGAATAAAA
2881 GTAATTGAGCAGTCATTTGCAAATGCTTCATTATAACATTTATGTGCTTAAGATTTCTAAGGTTTTAAAAAGTTACCTTT
2961 AATACAATCCTTAGAAACTCAGAAATTTCCTGATATTCATTAGATTATGGTGTTTGCCTAATTTATACCGGTTTTCACTG
3041 TATATTTTAATGAACTTTGATTGGTTACTTTTCCAGACATACAGATTTAATTTGGAATATGAACTTTGGTTCTTCATGAG
3121 TGCATTTTGAAAAAGAAAAAAAGTACACATTCAGAATCTGGCCAATTTAAGTTTGTATTTTAAAAATATTTTATGCATGT
3201 TAAGTATGGTCGCAGTAAATGAAATTGTGTTTAAGACTAAATTTACTACCGTTTTGAACAGACATTCCCAGATCATTCTT
3281 ATATTGTCAGATAACACTTGTGTATAATATCACTTTGGATCATGGACATGAGCTGGAAAAATGATGTATTTTTGTAGATT
3361 GTATGTCCAGAATGACTTTAGAACCGCATGATACGGTGGAAGGAGCACTGGACTAGTCGTCACTACCCTTTTTGGATTCA
3441 GGGCTCCTCACAATTAAAATGAGTGTAATGAAACAAGGTGAAAATATAGAAGCATCCCTTTGTATACTGTTTTGCTACTT
3521 ACAGTGTACTTGGCATTGCTTTATCTCACTGGATTCTCATGGTAGGATTTCTGAGATCTTAATCTAAGCTCCAAAGTTGT
3601 CTACTTTTTTGATCCTAGGGTGCTCCTTTTGTTTTACAGAGCAGGGTCACTTGATTTGCTAGCTGGTGGCAGAATTGGCA
3681 CCATTACCCAGGTCTGACTGACCACCAGTCAGAGGCACTTTATTTGTATCATGAAATGATTTGAAATCATTGTAAAGCAG
3761 CGAAGTCTGATAATGAATGCCAGCTTTCCTTGTGCTTTGATAACAAAGACTCCAAATATTCTGGAGAACCTGGATAAAAG
3841 TTTGAAGGGCTAGATTGGGATTTGAAGACAAAATTGTAGGAAATCTTACATTTTTGCAATAACAAACATTAATGAAAGCA
3921 AAACATTATAAAAGTAATTTTAATTCACCACATACTTATCAATTTCTTGATGCTTCCAAATGACATCTACAGATATGGTT
4001 TTGTGGACATCTTTTTCTGTTTACATAAATTTATCCACTTAAAATGTGATAATGTGGAGACAAAGCAAGATTTGATTACA
4081 TAAACTTTTCTCTGCATTGGTCTTTTCACTATCTTATTTGCTAACTTTTCTTATTTTTCTTCAACCTCCCCACCCTCCAT
4161 TTTTTGGATATTAAACAGGGAAAGCTTGCTACATTATAAAGATTGTTGGCACCATTTATTTTACACAAAGGCTAAAGGTT
4241 AACTTTTGGAAATGATGAGCTACTTTTATATATGTGTTTACTCATGCTTTGTGATATTTCTGGATCATTCCAGTCATAAA
4321 GACTTATTACATGTACTATTTCTTGCTACCTGTGAAAAGGTATATTTTAAAGAATGTATAACCAACAGTCCATTTACTTT
4401 TTATTAGTATGTAGAGGATTTGTATCTAATTCATGAATGTAGTTTTACAGTAGTTTGTCATTGTAAATGGAGCAAAGTAC
4481 ATTATCTTCTAAAATGTACATTATGTAAGAATTGTAAATATACTTAAGTAATTTGTATGCCAAAAAATTACAATAAGTCA
4561 ATAAAGATCTCACCTCTGGCTTAGTTCTTTCAAAAAAAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' ucGGUCGGUUGAGUGUCACGUCu 5'
            :|| |||:  :: ||||||| 
Target 5' tgTCACCCAGGCTGGAGTGCAGt 3'
 1265 - 1287 157.00 -19.40
2 
miRNA  3' ucgGUCGGUUGA-GUGUCACGUcu 5'
             | |: ||:| : |||||||  
Target 5' atgCTGTGAATTATTCAGTGCAtt 3'
 2627 - 2650 136.00 -14.00
3 
miRNA  3' ucgguCGGUUGAGUGUCACGUcu 5'
               ||: |||:||||||:|  
Target 5' gttttGCT-ACTTACAGTGTAct 3'
 3509 - 3530 133.00 -16.00
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN31570157 1 COSMIC
COSN30165950 8 COSMIC
COSN30643102 8 COSMIC
COSN30126013 9 COSMIC
COSN26964794 34 COSMIC
COSN30501716 43 COSMIC
COSN30158206 64 COSMIC
COSN30701000 64 COSMIC
COSN30566340 67 COSMIC
COSN30670414 68 COSMIC
COSN31522250 72 COSMIC
COSN22225391 100 COSMIC
COSN32180040 383 COSMIC
COSN17205647 569 COSMIC
COSN1939874 585 COSMIC
COSN20099567 694 COSMIC
COSN20638199 721 COSMIC
COSN9543016 1025 COSMIC
COSN25157926 1040 COSMIC
COSN7599760 1240 COSMIC
COSN18764489 1243 COSMIC
COSN20099566 1244 COSMIC
COSN15300542 1248 COSMIC
COSN5531959 1476 COSMIC
COSN5042500 1700 COSMIC
COSN9718075 1735 COSMIC
COSN1939872 1855 COSMIC
COSN15167728 1977 COSMIC
COSN25386644 2338 COSMIC
COSN24095742 3030 COSMIC
COSN9718074 3192 COSMIC
COSN31569658 3212 COSMIC
COSN28687446 3421 COSMIC
COSN30169390 4159 COSMIC
COSN31520392 4254 COSMIC
COSN31549457 4321 COSMIC
COSN26677355 4330 COSMIC
COSN31536223 4350 COSMIC
COSN29714276 4474 COSMIC
COSN28752088 4507 COSMIC
COSN17181878 4514 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs781493746 1 dbSNP
rs548974427 4 dbSNP
rs1281357979 6 dbSNP
rs530487889 8 dbSNP
rs775047492 9 dbSNP
rs1398664542 13 dbSNP
rs35467154 13 dbSNP
rs1342893773 14 dbSNP
rs563151430 21 dbSNP
rs1432724109 24 dbSNP
rs1447619781 24 dbSNP
rs1330866780 27 dbSNP
rs778946405 33 dbSNP
rs757308901 36 dbSNP
rs1397990452 38 dbSNP
rs753369388 39 dbSNP
rs938258769 40 dbSNP
rs1179972638 45 dbSNP
rs1334459152 49 dbSNP
rs781054933 49 dbSNP
rs1312033299 60 dbSNP
rs7610022 61 dbSNP
rs1253629950 62 dbSNP
rs1045359206 63 dbSNP
rs188024325 67 dbSNP
rs1256927708 75 dbSNP
rs565472532 77 dbSNP
rs1456168510 80 dbSNP
rs1195153559 88 dbSNP
rs1267759190 89 dbSNP
rs1432405801 90 dbSNP
rs747017320 91 dbSNP
rs775424292 102 dbSNP
rs957177962 107 dbSNP
rs1184735247 108 dbSNP
rs878876724 118 dbSNP
rs1170054648 145 dbSNP
rs1398256882 158 dbSNP
rs994075641 160 dbSNP
rs777676424 164 dbSNP
rs72607898 166 dbSNP
rs1385456592 175 dbSNP
rs1298294532 179 dbSNP
rs573185914 180 dbSNP
rs1341662815 187 dbSNP
rs941210794 188 dbSNP
rs1276985274 201 dbSNP
rs964975096 204 dbSNP
rs1050571875 212 dbSNP
rs149109156 212 dbSNP
rs1252636520 214 dbSNP
rs1243586342 217 dbSNP
rs1207830797 226 dbSNP
rs1263668896 228 dbSNP
rs1478089605 237 dbSNP
rs561274857 238 dbSNP
rs1192922511 240 dbSNP
rs1421515141 240 dbSNP
rs72607897 241 dbSNP
rs1165667973 249 dbSNP
rs1349528463 253 dbSNP
rs1456632135 255 dbSNP
rs143217988 262 dbSNP
rs1361619287 264 dbSNP
rs1399908325 266 dbSNP
rs1315706389 270 dbSNP
rs976092229 281 dbSNP
rs1337717189 285 dbSNP
rs935294974 286 dbSNP
rs1248041067 290 dbSNP
rs924194310 292 dbSNP
rs1242209905 295 dbSNP
rs1008835258 307 dbSNP
rs979648608 308 dbSNP
rs1488509814 310 dbSNP
rs529099377 313 dbSNP
rs182606387 316 dbSNP
rs994913384 324 dbSNP
rs1486659384 325 dbSNP
rs1390835066 326 dbSNP
rs990609339 328 dbSNP
rs960724043 329 dbSNP
rs1300108440 331 dbSNP
rs899285970 338 dbSNP
rs1034703520 340 dbSNP
rs1419513220 342 dbSNP
rs1384975640 349 dbSNP
rs539079158 358 dbSNP
rs1164568302 364 dbSNP
rs1447003676 375 dbSNP
rs1449493654 380 dbSNP
rs993813967 386 dbSNP
rs1377875799 387 dbSNP
rs1393885376 388 dbSNP
rs1180477806 390 dbSNP
rs12485302 393 dbSNP
rs1354069416 408 dbSNP
rs1016840525 424 dbSNP
rs1239178010 424 dbSNP
rs1252299976 442 dbSNP
rs1219773680 446 dbSNP
rs3087885 448 dbSNP
rs1292264934 453 dbSNP
rs748435994 458 dbSNP
rs1236953615 459 dbSNP
rs889648227 466 dbSNP
rs906714085 474 dbSNP
rs192099350 486 dbSNP
rs1439382330 496 dbSNP
rs945641129 498 dbSNP
rs1278815245 509 dbSNP
rs912891883 512 dbSNP
rs1157229015 513 dbSNP
rs1052761344 519 dbSNP
rs1040444807 520 dbSNP
rs1290494732 527 dbSNP
rs762171242 547 dbSNP
rs187295078 553 dbSNP
rs935329347 554 dbSNP
rs549262702 557 dbSNP
rs1306764720 561 dbSNP
rs779112408 569 dbSNP
rs1369522295 570 dbSNP
rs149149854 573 dbSNP
rs974913051 574 dbSNP
rs755276736 576 dbSNP
rs1310447382 585 dbSNP
rs751439092 596 dbSNP
rs1158484915 598 dbSNP
rs964551078 601 dbSNP
rs569586578 603 dbSNP
rs1364998730 605 dbSNP
rs946940915 606 dbSNP
rs1478581100 607 dbSNP
rs1196601487 618 dbSNP
rs1423704958 619 dbSNP
rs1467699710 621 dbSNP
rs1172183103 636 dbSNP
rs1400438117 637 dbSNP
rs987350658 639 dbSNP
rs916784489 643 dbSNP
rs767988495 649 dbSNP
rs1351363813 661 dbSNP
rs991410204 662 dbSNP
rs1274116095 663 dbSNP
rs960882947 675 dbSNP
rs1220440015 681 dbSNP
rs762069042 682 dbSNP
rs973451459 687 dbSNP
rs182752205 688 dbSNP
rs1317399577 691 dbSNP
rs972447591 697 dbSNP
rs1445062154 705 dbSNP
rs1221282677 706 dbSNP
rs1479069903 706 dbSNP
rs34509351 706 dbSNP
rs961067090 706 dbSNP
rs1195090099 707 dbSNP
rs1423657615 708 dbSNP
rs1283542193 709 dbSNP
rs1016536420 710 dbSNP
rs1351543132 711 dbSNP
rs1270120888 712 dbSNP
rs1221705690 713 dbSNP
rs1347955196 718 dbSNP
rs1345125934 719 dbSNP
rs564333715 720 dbSNP
rs1286089697 721 dbSNP
rs1339854559 721 dbSNP
rs889712831 721 dbSNP
rs190626262 727 dbSNP
rs1227997856 732 dbSNP
rs559217672 735 dbSNP
rs998427722 737 dbSNP
rs900974909 745 dbSNP
rs1263105656 757 dbSNP
rs1040517353 760 dbSNP
rs999611077 761 dbSNP
rs546768167 765 dbSNP
rs1472909735 771 dbSNP
rs1325026967 773 dbSNP
rs1162308963 778 dbSNP
rs146635487 785 dbSNP
rs946710093 786 dbSNP
rs1401829797 791 dbSNP
rs1359814144 799 dbSNP
rs1025133577 802 dbSNP
rs1055343758 816 dbSNP
rs1341191481 818 dbSNP
rs1447508800 823 dbSNP
rs1009773113 824 dbSNP
rs1468770215 834 dbSNP
rs1429638583 836 dbSNP
rs1241341225 842 dbSNP
rs73890752 845 dbSNP
rs1202756835 847 dbSNP
rs1257598921 853 dbSNP
rs1052707969 860 dbSNP
rs935654514 861 dbSNP
rs763579593 863 dbSNP
rs1442529003 865 dbSNP
rs904207154 867 dbSNP
rs1186321880 873 dbSNP
rs542874513 876 dbSNP
rs961099233 877 dbSNP
rs1441228272 878 dbSNP
rs1474330073 879 dbSNP
rs1241270264 881 dbSNP
rs1193580336 884 dbSNP
rs1451508487 890 dbSNP
rs943118086 906 dbSNP
rs1174263979 907 dbSNP
rs1402949165 912 dbSNP
rs113331960 920 dbSNP
rs141418578 920 dbSNP
rs74476062 926 dbSNP
rs984210471 932 dbSNP
rs185370606 934 dbSNP
rs1322905473 942 dbSNP
rs1264042440 953 dbSNP
rs1334376945 954 dbSNP
rs11928860 966 dbSNP
rs545115068 974 dbSNP
rs1257104080 978 dbSNP
rs919203421 979 dbSNP
rs1337651604 980 dbSNP
rs998106108 985 dbSNP
rs965245987 992 dbSNP
rs1458795840 996 dbSNP
rs973740454 1006 dbSNP
rs1270004730 1008 dbSNP
rs1431857129 1018 dbSNP
rs1417110614 1034 dbSNP
rs1200825554 1037 dbSNP
rs145908931 1044 dbSNP
rs796443762 1047 dbSNP
rs1451354170 1052 dbSNP
rs1174364751 1053 dbSNP
rs762560167 1065 dbSNP
rs1406141778 1066 dbSNP
rs1394704091 1068 dbSNP
rs1388901752 1073 dbSNP
rs1302485003 1080 dbSNP
rs1331031208 1081 dbSNP
rs114325690 1083 dbSNP
rs1407888412 1084 dbSNP
rs1319411249 1088 dbSNP
rs1025082768 1090 dbSNP
rs1257033774 1092 dbSNP
rs1479500947 1095 dbSNP
rs1211397879 1098 dbSNP
rs181331463 1104 dbSNP
rs557038776 1105 dbSNP
rs541595441 1106 dbSNP
rs1425816151 1117 dbSNP
rs939585739 1118 dbSNP
rs372278830 1121 dbSNP
rs1371545741 1128 dbSNP
rs928162939 1139 dbSNP
rs573837311 1142 dbSNP
rs775734705 1143 dbSNP
rs1390531297 1144 dbSNP
rs1403582417 1146 dbSNP
rs1300617487 1151 dbSNP
rs555602194 1152 dbSNP
rs1001525309 1163 dbSNP
rs878981008 1172 dbSNP
rs566466763 1173 dbSNP
rs904152310 1176 dbSNP
rs1305396316 1188 dbSNP
rs759362183 1190 dbSNP
rs1037174810 1201 dbSNP
rs1265787508 1205 dbSNP
rs1490134312 1207 dbSNP
rs1460959737 1208 dbSNP
rs1372029545 1209 dbSNP
rs1265267145 1211 dbSNP
rs1243858490 1219 dbSNP
rs1212273620 1222 dbSNP
rs1436303161 1226 dbSNP
rs1272474048 1227 dbSNP
rs1215592157 1228 dbSNP
rs1344740124 1238 dbSNP
rs1313610621 1241 dbSNP
rs1245838374 1242 dbSNP
rs1384128562 1243 dbSNP
rs9874644 1244 dbSNP
rs11923271 1245 dbSNP
rs200248324 1245 dbSNP
rs774973683 1245 dbSNP
rs1399998113 1247 dbSNP
rs1312995283 1248 dbSNP
rs200598935 1248 dbSNP
rs745535630 1248 dbSNP
rs752009039 1248 dbSNP
rs1358392137 1250 dbSNP
rs1439315220 1253 dbSNP
rs538938969 1255 dbSNP
rs1354294265 1256 dbSNP
rs1215047809 1257 dbSNP
rs1258992295 1262 dbSNP
rs1484293215 1263 dbSNP
rs1182594091 1264 dbSNP
rs940168969 1266 dbSNP
rs1180892407 1276 dbSNP
rs909624008 1278 dbSNP
rs35684667 1287 dbSNP
rs1419603324 1288 dbSNP
rs1039142921 1290 dbSNP
rs1160162182 1292 dbSNP
rs537347251 1293 dbSNP
rs1342860538 1298 dbSNP
rs1467146739 1299 dbSNP
rs1302982119 1302 dbSNP
rs983852400 1305 dbSNP
rs1450064877 1315 dbSNP
rs1311157322 1317 dbSNP
rs1383120081 1321 dbSNP
rs953879019 1323 dbSNP
rs1223108604 1329 dbSNP
rs1282066279 1330 dbSNP
rs920937620 1331 dbSNP
rs976689307 1332 dbSNP
rs1415805223 1334 dbSNP
rs1262658583 1339 dbSNP
rs943129016 1344 dbSNP
rs1239118003 1352 dbSNP
rs890232654 1354 dbSNP
rs1183674159 1355 dbSNP
rs1051582190 1359 dbSNP
rs1434322380 1365 dbSNP
rs929094816 1367 dbSNP
rs1232580852 1369 dbSNP
rs375838495 1370 dbSNP
rs1033119521 1375 dbSNP
rs1467862565 1377 dbSNP
rs1206110796 1378 dbSNP
rs919110173 1379 dbSNP
rs973310938 1381 dbSNP
rs1441219756 1388 dbSNP
rs113038029 1389 dbSNP
rs926643056 1390 dbSNP
rs1010987442 1392 dbSNP
rs1222148105 1400 dbSNP
rs1360802461 1403 dbSNP
rs981204264 1418 dbSNP
rs970775666 1424 dbSNP
rs1371959711 1426 dbSNP
rs917973444 1448 dbSNP
rs140654761 1449 dbSNP
rs956832799 1454 dbSNP
rs1248862942 1467 dbSNP
rs1489082259 1468 dbSNP
rs1032929560 1470 dbSNP
rs1427945306 1471 dbSNP
rs1001114934 1476 dbSNP
rs118104988 1480 dbSNP
rs1017250626 1488 dbSNP
rs1409076369 1489 dbSNP
rs1326568818 1491 dbSNP
rs1363278014 1505 dbSNP
rs1037205891 1508 dbSNP
rs146836053 1509 dbSNP
rs1437045520 1510 dbSNP
rs1302506476 1515 dbSNP
rs149830474 1518 dbSNP
rs72607896 1519 dbSNP
rs993249089 1530 dbSNP
rs142920402 1535 dbSNP
rs200914605 1535 dbSNP
rs1213084817 1537 dbSNP
rs897654548 1547 dbSNP
rs111689638 1553 dbSNP
rs1399077432 1562 dbSNP
rs7632534 1564 dbSNP
rs567377985 1575 dbSNP
rs1473706480 1584 dbSNP
rs1267391559 1592 dbSNP
rs1489587641 1593 dbSNP
rs1266965417 1606 dbSNP
rs926563458 1611 dbSNP
rs779236841 1616 dbSNP
rs867404691 1618 dbSNP
rs1199234749 1620 dbSNP
rs779057378 1621 dbSNP
rs1415641705 1623 dbSNP
rs1267809792 1625 dbSNP
rs1425070604 1627 dbSNP
rs1214240412 1630 dbSNP
rs1162758284 1633 dbSNP
rs976431051 1642 dbSNP
rs943664704 1644 dbSNP
rs1298864725 1645 dbSNP
rs549214193 1661 dbSNP
rs1316807394 1669 dbSNP
rs924527690 1671 dbSNP
rs1428845603 1674 dbSNP
rs1286183656 1676 dbSNP
rs1284375936 1677 dbSNP
rs73206669 1679 dbSNP
rs1290130398 1687 dbSNP
rs1343262938 1693 dbSNP
rs968994330 1697 dbSNP
rs1190494287 1700 dbSNP
rs1445949922 1700 dbSNP
rs1238856271 1701 dbSNP
rs1282233726 1702 dbSNP
rs369787678 1704 dbSNP
rs1182718504 1707 dbSNP
rs1383205013 1717 dbSNP
rs1405389319 1724 dbSNP
rs1369432406 1738 dbSNP
rs563864715 1752 dbSNP
rs917921255 1757 dbSNP
rs1384255758 1762 dbSNP
rs988149014 1763 dbSNP
rs1021437986 1764 dbSNP
rs1453005044 1767 dbSNP
rs1345663518 1782 dbSNP
rs545702203 1792 dbSNP
rs1452246394 1799 dbSNP
rs1313348230 1802 dbSNP
rs1379605260 1812 dbSNP
rs1241459614 1830 dbSNP
rs989997425 1836 dbSNP
rs1160017436 1839 dbSNP
rs959494512 1845 dbSNP
rs956818005 1862 dbSNP
rs777729933 1898 dbSNP
rs1461471103 1905 dbSNP
rs533137191 1914 dbSNP
rs980031413 1915 dbSNP
rs1441316552 1920 dbSNP
rs559792114 1921 dbSNP
rs1175950036 1931 dbSNP
rs1363140894 1932 dbSNP
rs1468602296 1936 dbSNP
rs1018913433 1945 dbSNP
rs1174362975 1952 dbSNP
rs1434158795 1957 dbSNP
rs1269959715 1961 dbSNP
rs1008501800 1962 dbSNP
rs1004420177 1965 dbSNP
rs1469441493 1982 dbSNP
rs888636492 1987 dbSNP
rs1048542847 1994 dbSNP
rs527824044 1996 dbSNP
rs748033357 1998 dbSNP
rs1249121275 2000 dbSNP
rs1334476017 2003 dbSNP
rs1236132248 2004 dbSNP
rs1276057168 2010 dbSNP
rs1323661109 2014 dbSNP
rs1030036682 2015 dbSNP
rs899601429 2019 dbSNP
rs1320776959 2024 dbSNP
rs1260875490 2025 dbSNP
rs1040779229 2030 dbSNP
rs749641874 2034 dbSNP
rs780342974 2035 dbSNP
rs924267904 2047 dbSNP
rs897594557 2055 dbSNP
rs1200943824 2058 dbSNP
rs185908878 2067 dbSNP
rs947310191 2075 dbSNP
rs914443130 2076 dbSNP
rs1322452681 2078 dbSNP
rs879383727 2080 dbSNP
rs756641791 2081 dbSNP
rs1388989632 2094 dbSNP
rs1345530840 2099 dbSNP
rs1403782359 2100 dbSNP
rs958744296 2100 dbSNP
rs1308866326 2101 dbSNP
rs1227773834 2108 dbSNP
rs905045478 2114 dbSNP
rs1044923329 2123 dbSNP
rs1337241788 2129 dbSNP
rs1211497646 2130 dbSNP
rs1269539267 2140 dbSNP
rs750832214 2148 dbSNP
rs560282908 2157 dbSNP
rs555590037 2169 dbSNP
rs1379533995 2171 dbSNP
rs1168784246 2172 dbSNP
rs13325136 2179 dbSNP
rs1371630118 2183 dbSNP
rs1459778339 2192 dbSNP
rs1004900827 2202 dbSNP
rs114091684 2205 dbSNP
rs979552639 2206 dbSNP
rs997029598 2209 dbSNP
rs757936410 2221 dbSNP
rs557740161 2226 dbSNP
rs911396875 2229 dbSNP
rs1363486045 2235 dbSNP
rs1382400519 2249 dbSNP
rs899967962 2250 dbSNP
rs1324413322 2254 dbSNP
rs1247882830 2256 dbSNP
rs752290502 2285 dbSNP
rs1242017819 2286 dbSNP
rs1358615052 2300 dbSNP
rs987016837 2301 dbSNP
rs1281452125 2304 dbSNP
rs1040851864 2313 dbSNP
rs1186087944 2314 dbSNP
rs955648022 2316 dbSNP
rs1200481936 2318 dbSNP
rs764948993 2319 dbSNP
rs1029984385 2325 dbSNP
rs1385061343 2336 dbSNP
rs902877780 2347 dbSNP
rs1226508075 2352 dbSNP
rs1346391052 2357 dbSNP
rs1041414794 2359 dbSNP
rs971753144 2366 dbSNP
rs1287843994 2371 dbSNP
rs1382320374 2376 dbSNP
rs1454284155 2390 dbSNP
rs1315415701 2395 dbSNP
rs1235857534 2397 dbSNP
rs1243592507 2399 dbSNP
rs1342582323 2406 dbSNP
rs961752086 2414 dbSNP
rs1243724446 2415 dbSNP
rs1259077696 2429 dbSNP
rs2000052 2437 dbSNP
rs1204577945 2449 dbSNP
rs1336181330 2460 dbSNP
rs776470746 2469 dbSNP
rs1443175864 2473 dbSNP
rs565296918 2477 dbSNP
rs1404706784 2487 dbSNP
rs1409339234 2491 dbSNP
rs1419072820 2492 dbSNP
rs1296653237 2493 dbSNP
rs1461836636 2494 dbSNP
rs1157697946 2499 dbSNP
rs2000051 2505 dbSNP
rs928467625 2506 dbSNP
rs982185517 2507 dbSNP
rs112238038 2510 dbSNP
rs970774224 2510 dbSNP
rs982822112 2522 dbSNP
rs867063431 2523 dbSNP
rs1223192832 2546 dbSNP
rs1170825777 2549 dbSNP
rs1325799295 2566 dbSNP
rs1224287513 2570 dbSNP
rs1262770779 2576 dbSNP
rs1027247452 2577 dbSNP
rs1385092978 2584 dbSNP
rs896428965 2596 dbSNP
rs1480579858 2597 dbSNP
rs1187643116 2599 dbSNP
rs1364609964 2605 dbSNP
rs1248898983 2613 dbSNP
rs1481138596 2624 dbSNP
rs1176598064 2625 dbSNP
rs772962821 2640 dbSNP
rs935298886 2648 dbSNP
rs1467941618 2651 dbSNP
rs180962700 2659 dbSNP
rs1354921901 2663 dbSNP
rs1441349347 2664 dbSNP
rs1296390993 2669 dbSNP
rs150959757 2672 dbSNP
rs1405617490 2673 dbSNP
rs757735654 2687 dbSNP
rs1321635916 2694 dbSNP
rs1216599049 2695 dbSNP
rs942806916 2696 dbSNP
rs190500723 2697 dbSNP
rs1274103467 2705 dbSNP
rs1219908834 2715 dbSNP
rs570244242 2725 dbSNP
rs1307288887 2736 dbSNP
rs75802045 2742 dbSNP
rs986991394 2747 dbSNP
rs1284709339 2749 dbSNP
rs1019779291 2750 dbSNP
rs1008369231 2752 dbSNP
rs1245691697 2764 dbSNP
rs1267611490 2765 dbSNP
rs1476807408 2767 dbSNP
rs1187936132 2769 dbSNP
rs902951292 2778 dbSNP
rs934218976 2793 dbSNP
rs1041817834 2798 dbSNP
rs1305179384 2806 dbSNP
rs918814506 2807 dbSNP
rs142505426 2830 dbSNP
rs754995273 2833 dbSNP
rs1343747130 2840 dbSNP
rs1433076019 2843 dbSNP
rs1271005683 2847 dbSNP
rs1361597121 2848 dbSNP
rs1351282867 2853 dbSNP
rs892784650 2854 dbSNP
rs961976721 2856 dbSNP
rs1222425909 2860 dbSNP
rs867942314 2860 dbSNP
rs984941997 2861 dbSNP
rs937238296 2862 dbSNP
rs1217423563 2881 dbSNP
rs1423058101 2885 dbSNP
rs969202642 2906 dbSNP
rs928501887 2913 dbSNP
rs1343661250 2924 dbSNP
rs1164326956 2928 dbSNP
rs1445117105 2933 dbSNP
rs1023405023 2952 dbSNP
rs1459031977 2953 dbSNP
rs1162857090 2956 dbSNP
rs1013399494 2985 dbSNP
rs896335724 2998 dbSNP
rs370490565 2999 dbSNP
rs1180403154 3003 dbSNP
rs999450620 3007 dbSNP
rs774463624 3016 dbSNP
rs768852726 3021 dbSNP
rs903818467 3028 dbSNP
rs1344794431 3029 dbSNP
rs1428941408 3030 dbSNP
rs1317549131 3042 dbSNP
rs559778913 3055 dbSNP
rs185690906 3063 dbSNP
rs1245801591 3064 dbSNP
rs1253447284 3075 dbSNP
rs1197101824 3080 dbSNP
rs908638144 3082 dbSNP
rs1490122019 3095 dbSNP
rs1290563399 3097 dbSNP
rs942761613 3099 dbSNP
rs983241273 3108 dbSNP
rs1446043815 3109 dbSNP
rs889903497 3116 dbSNP
rs529389502 3120 dbSNP
rs1049646 3122 dbSNP
rs1244705548 3130 dbSNP
rs1461612322 3139 dbSNP
rs1182817741 3143 dbSNP
rs1366640624 3163 dbSNP
rs1051194806 3165 dbSNP
rs1471141714 3171 dbSNP
rs934125660 3171 dbSNP
rs952778646 3180 dbSNP
rs1407376048 3181 dbSNP
rs1338948033 3187 dbSNP
rs1455802666 3187 dbSNP
rs1259057655 3205 dbSNP
rs918763596 3206 dbSNP
rs1227798358 3211 dbSNP
rs113473451 3212 dbSNP
rs1338019958 3218 dbSNP
rs1290438501 3221 dbSNP
rs1279584702 3228 dbSNP
rs1349372062 3231 dbSNP
rs1226128379 3237 dbSNP
rs1264600668 3245 dbSNP
rs139504936 3250 dbSNP
rs576128428 3251 dbSNP
rs984495608 3254 dbSNP
rs1324575145 3255 dbSNP
rs969529508 3276 dbSNP
rs916301799 3282 dbSNP
rs1157781668 3283 dbSNP
rs991887514 3287 dbSNP
rs1471661067 3291 dbSNP
rs1178750266 3304 dbSNP
rs1469521693 3306 dbSNP
rs1413798279 3309 dbSNP
rs960488154 3315 dbSNP
rs9863901 3320 dbSNP
rs1349243237 3323 dbSNP
rs192076446 3328 dbSNP
rs968015638 3330 dbSNP
rs1323777417 3332 dbSNP
rs1022705328 3333 dbSNP
rs1253980362 3348 dbSNP
rs1341213248 3357 dbSNP
rs1196243466 3359 dbSNP
rs1011738014 3361 dbSNP
rs1482073993 3363 dbSNP
rs780329256 3363 dbSNP
rs1201653167 3364 dbSNP
rs1006863740 3367 dbSNP
rs892825528 3368 dbSNP
rs1375075700 3373 dbSNP
rs907749013 3375 dbSNP
rs1034418653 3379 dbSNP
rs1462802071 3380 dbSNP
rs555640950 3385 dbSNP
rs568535567 3386 dbSNP
rs998280067 3390 dbSNP
rs897322989 3391 dbSNP
rs372099981 3394 dbSNP
rs1270304680 3395 dbSNP
rs1221948055 3398 dbSNP
rs1227883924 3405 dbSNP
rs1296656483 3406 dbSNP
rs753189836 3407 dbSNP
rs1047185105 3408 dbSNP
rs1292541399 3410 dbSNP
rs1490208991 3413 dbSNP
rs931371730 3419 dbSNP
rs746270997 3429 dbSNP
rs941586913 3435 dbSNP
rs540323925 3442 dbSNP
rs975835742 3451 dbSNP
rs1388729979 3461 dbSNP
rs1446927369 3464 dbSNP
rs910162590 3470 dbSNP
rs1320463562 3484 dbSNP
rs553346269 3487 dbSNP
rs1435250978 3491 dbSNP
rs1390159210 3507 dbSNP
rs947699305 3507 dbSNP
rs1334069930 3508 dbSNP
rs1413573087 3523 dbSNP
rs942636153 3532 dbSNP
rs147427115 3536 dbSNP
rs1425361579 3558 dbSNP
rs574176924 3560 dbSNP
rs546516090 3562 dbSNP
rs912824905 3566 dbSNP
rs555960026 3591 dbSNP
rs987042941 3593 dbSNP
rs868157635 3594 dbSNP
rs967578195 3597 dbSNP
rs991836708 3604 dbSNP
rs1020853248 3609 dbSNP
rs781752106 3614 dbSNP
rs1486288858 3621 dbSNP
rs189260404 3625 dbSNP
rs1246498842 3626 dbSNP
rs1462945048 3637 dbSNP
rs1184655548 3638 dbSNP
rs923767744 3645 dbSNP
rs1372490520 3647 dbSNP
rs957362702 3651 dbSNP
rs1034079317 3666 dbSNP
rs1189111655 3667 dbSNP
rs1319477712 3668 dbSNP
rs977980109 3675 dbSNP
rs1454366598 3678 dbSNP
rs1337192161 3681 dbSNP
rs968299860 3684 dbSNP
rs906846280 3687 dbSNP
rs1022190328 3688 dbSNP
rs879200583 3698 dbSNP
rs1394241678 3699 dbSNP
rs1024212318 3700 dbSNP
rs199712162 3718 dbSNP
rs775693897 3719 dbSNP
rs1227950845 3726 dbSNP
rs752229180 3733 dbSNP
rs1201790805 3735 dbSNP
rs1431222999 3745 dbSNP
rs953995645 3761 dbSNP
rs886300075 3762 dbSNP
rs1029705195 3777 dbSNP
rs1442066350 3779 dbSNP
rs1204681451 3789 dbSNP
rs1237319425 3792 dbSNP
rs1482537019 3802 dbSNP
rs144481711 3816 dbSNP
rs551993798 3822 dbSNP
rs1016166061 3833 dbSNP
rs1005691530 3843 dbSNP
rs1409269246 3858 dbSNP
rs1470779001 3861 dbSNP
rs540136005 3867 dbSNP
rs1044613877 3868 dbSNP
rs948981607 3869 dbSNP
rs566405594 3871 dbSNP
rs1464419726 3876 dbSNP
rs1299826310 3879 dbSNP
rs1374038695 3888 dbSNP
rs1229824387 3890 dbSNP
rs557451696 3899 dbSNP
rs1056096941 3902 dbSNP
rs1446556887 3909 dbSNP
rs1278317436 3913 dbSNP
rs1359448503 3918 dbSNP
rs1207170995 3919 dbSNP
rs1252394268 3923 dbSNP
rs1335765389 3930 dbSNP
rs1483054737 3936 dbSNP
rs939091408 3942 dbSNP
rs1408045839 3959 dbSNP
rs754651937 3959 dbSNP
rs1191417481 3961 dbSNP
rs1369681875 3966 dbSNP
rs867820363 3979 dbSNP
rs946266935 3984 dbSNP
rs1383231746 3989 dbSNP
rs753364237 3990 dbSNP
rs946531061 3991 dbSNP
rs913457178 3996 dbSNP
rs140633884 4002 dbSNP
rs1306209695 4006 dbSNP
rs765837731 4010 dbSNP
rs1238320403 4011 dbSNP
rs1405711264 4012 dbSNP
rs1212476943 4023 dbSNP
rs1274499820 4024 dbSNP
rs1436249404 4025 dbSNP
rs143986348 4038 dbSNP
rs953981061 4046 dbSNP
rs1206237689 4066 dbSNP
rs979816716 4077 dbSNP
rs1344936715 4083 dbSNP
rs1029648112 4085 dbSNP
rs976780721 4091 dbSNP
rs539432550 4101 dbSNP
rs1015657375 4102 dbSNP
rs1221731856 4106 dbSNP
rs1004787173 4108 dbSNP
rs1476858354 4111 dbSNP
rs1188026249 4112 dbSNP
rs1006054795 4114 dbSNP
rs1390586400 4119 dbSNP
rs1439601307 4125 dbSNP
rs888589046 4146 dbSNP
rs184136099 4151 dbSNP
rs35425902 4152 dbSNP
rs1027532643 4166 dbSNP
rs1323056450 4167 dbSNP
rs1348330787 4170 dbSNP
rs1013119327 4172 dbSNP
rs1289776040 4179 dbSNP
rs1431396160 4184 dbSNP
rs1317758064 4185 dbSNP
rs900323354 4210 dbSNP
rs896095683 4212 dbSNP
rs1363704334 4223 dbSNP
rs1163967652 4231 dbSNP
rs1404881934 4240 dbSNP
rs531841960 4247 dbSNP
rs1414668089 4257 dbSNP
rs1057328823 4258 dbSNP
rs1248345043 4270 dbSNP
rs938996512 4274 dbSNP
rs1464287805 4276 dbSNP
rs1183621669 4283 dbSNP
rs555213625 4284 dbSNP
rs1387010960 4295 dbSNP
rs1006961076 4304 dbSNP
rs1162686356 4305 dbSNP
rs891160251 4310 dbSNP
rs191639838 4316 dbSNP
rs187992034 4327 dbSNP
rs571822176 4330 dbSNP
rs1054680335 4331 dbSNP
rs985311822 4332 dbSNP
rs1339148689 4351 dbSNP
rs936202431 4358 dbSNP
rs1447974706 4359 dbSNP
rs1283048352 4362 dbSNP
rs927466358 4364 dbSNP
rs1225055403 4367 dbSNP
rs1268359660 4379 dbSNP
rs979846352 4385 dbSNP
rs560048140 4393 dbSNP
rs149512120 4397 dbSNP
rs1291423727 4403 dbSNP
rs1442890883 4410 dbSNP
rs1186752892 4411 dbSNP
rs1235746370 4422 dbSNP
rs574051139 4432 dbSNP
rs916971942 4443 dbSNP
rs983080858 4446 dbSNP
rs1411469593 4449 dbSNP
rs528249453 4450 dbSNP
rs1028016545 4463 dbSNP
rs994761723 4463 dbSNP
rs1288575223 4471 dbSNP
rs964925966 4499 dbSNP
rs1332786336 4508 dbSNP
rs767420997 4509 dbSNP
rs976685939 4524 dbSNP
rs1411488042 4529 dbSNP
rs1017435603 4532 dbSNP
rs1349474707 4536 dbSNP
rs1226220415 4540 dbSNP
rs1008706152 4547 dbSNP
rs1345465094 4548 dbSNP
rs961363964 4553 dbSNP
rs138794212 4554 dbSNP
rs1439532878 4557 dbSNP
rs984215433 4561 dbSNP
rs537536782 4574 dbSNP
rs1251200408 4578 dbSNP
rs1471711767 4579 dbSNP
rs1201866904 4583 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HEK293S
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in GSM1084079. RNA binding protein: AGO2. Condition:CLIP_hippuristanol_rep2_AbnovaAb ...

- Karginov FV; Hannon GJ, 2013, Genes & development.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1 
miRNA  3' ucgguCGGUUGAGU--GUC--ACGUCu 5'
               ||::  |||  |||  || || 
Target 5' ----uGCUGUGUCACCCAGGCUGGAGu 3'
 		1 - 23
Article - Karginov FV; Hannon GJ
- Genes & development, 2013
When adapting to environmental stress, cells attenuate and reprogram their translational output. In part, these altered translation profiles are established through changes in the interactions between RNA-binding proteins and mRNAs. The Argonaute 2 (Ago2)/microRNA (miRNA) machinery has been shown to participate in stress-induced translational up-regulation of a particular mRNA, CAT-1; however, a detailed, transcriptome-wide understanding of the involvement of Ago2 in the process has been lacking. Here, we profiled the overall changes in Ago2-mRNA interactions upon arsenite stress by cross-linking immunoprecipitation (CLIP) followed by high-throughput sequencing (CLIP-seq). Ago2 displayed a significant remodeling of its transcript occupancy, with the majority of 3' untranslated region (UTR) and coding sequence (CDS) sites exhibiting stronger interaction. Interestingly, target sites that were destined for release from Ago2 upon stress were depleted in miRNA complementarity signatures, suggesting an alternative mode of interaction. To compare the changes in Ago2-binding patterns across transcripts with changes in their translational states, we measured mRNA profiles on ribosome/polysome gradients by RNA sequencing (RNA-seq). Increased Ago2 occupancy correlated with stronger repression of translation for those mRNAs, as evidenced by a shift toward lighter gradient fractions upon stress, while release of Ago2 was associated with the limited number of transcripts that remained translated. Taken together, these data point to a role for Ago2 and the mammalian miRNAs in mediating the translational component of the stress response.
LinkOut: [PMID: 23824327]
CLIP-seq Support 1 for dataset GSM1084079
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_hippuristanol_rep2_AbnovaAb
Location of target site ENST00000326793.6 | 3UTR | UGCUGUGUCACCCAGGCUGGAGU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
296 hsa-miR-4793-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT092332 EDEM1 ER degradation enhancing alpha-mannosidase like protein 1 2 6
MIRT131237 ATG2A autophagy related 2A 2 2
MIRT145926 ANKFY1 ankyrin repeat and FYVE domain containing 1 2 2
MIRT206559 SOCS5 suppressor of cytokine signaling 5 2 8
MIRT226455 TP53INP1 tumor protein p53 inducible nuclear protein 1 2 2
MIRT337662 ZNF695 zinc finger protein 695 2 2
MIRT405828 SIX4 SIX homeobox 4 2 2
MIRT455113 RILPL1 Rab interacting lysosomal protein like 1 2 2
MIRT456756 TMEM239 transmembrane protein 239 2 4
MIRT457974 RGS9BP regulator of G protein signaling 9 binding protein 2 2
MIRT458173 LYRM4 LYR motif containing 4 2 4
MIRT458245 SLC9A7 solute carrier family 9 member A7 2 2
MIRT466145 TMEM120B transmembrane protein 120B 2 2
MIRT474981 KATNAL1 katanin catalytic subunit A1 like 1 2 2
MIRT475601 HMGB2 high mobility group box 2 2 4
MIRT480759 BMP3 bone morphogenetic protein 3 2 4
MIRT481156 AVL9 AVL9 cell migration associated 2 2
MIRT482155 AK2 adenylate kinase 2 2 2
MIRT488386 VAV3 vav guanine nucleotide exchange factor 3 2 6
MIRT496575 KIF18B kinesin family member 18B 2 2
MIRT498411 TXNDC16 thioredoxin domain containing 16 2 4
MIRT504547 ZNF417 zinc finger protein 417 2 6
MIRT505417 TCF7L2 transcription factor 7 like 2 2 2
MIRT509349 ALDH9A1 aldehyde dehydrogenase 9 family member A1 2 6
MIRT512164 CD164 CD164 molecule 2 6
MIRT517238 PRIM1 DNA primase subunit 1 2 2
MIRT518671 KCNMB1 potassium calcium-activated channel subfamily M regulatory beta subunit 1 2 2
MIRT519298 MLH1 mutL homolog 1 2 2
MIRT523662 FOSL2 FOS like 2, AP-1 transcription factor subunit 2 2
MIRT525452 GPATCH2L G-patch domain containing 2 like 2 2
MIRT539847 ZNF766 zinc finger protein 766 2 2
MIRT540076 SSH3 slingshot protein phosphatase 3 2 2
MIRT540320 PIGR polymeric immunoglobulin receptor 2 2
MIRT540548 MAGI3 membrane associated guanylate kinase, WW and PDZ domain containing 3 2 2
MIRT540759 UTP6 UTP6, small subunit processome component 2 2
MIRT541545 HIATL2 major facilitator superfamily domain containing 14C 2 2
MIRT541553 SLC35E1 solute carrier family 35 member E1 2 2
MIRT541666 ATP8B3 ATPase phospholipid transporting 8B3 2 4
MIRT541722 TFDP2 transcription factor Dp-2 2 2
MIRT541800 DUSP28 dual specificity phosphatase 28 2 2
MIRT541816 SMU1 DNA replication regulator and spliceosomal factor 2 2
MIRT541907 VWA7 von Willebrand factor A domain containing 7 2 2
MIRT542154 UGDH UDP-glucose 6-dehydrogenase 2 2
MIRT542207 C14orf142 GON7, KEOPS complex subunit homolog 2 2
MIRT542233 FUT9 fucosyltransferase 9 2 2
MIRT542320 SERPING1 serpin family G member 1 2 2
MIRT542369 PAICS phosphoribosylaminoimidazole carboxylase and phosphoribosylaminoimidazolesuccinocarboxamide synthase 2 2
MIRT542476 APOC3 apolipoprotein C3 2 2
MIRT542641 TIMM8A translocase of inner mitochondrial membrane 8A 2 2
MIRT542660 TAF11 TATA-box binding protein associated factor 11 2 2
MIRT542749 PRRG4 proline rich and Gla domain 4 2 4
MIRT542789 PLEKHA3 pleckstrin homology domain containing A3 2 2
MIRT545442 FGFRL1 fibroblast growth factor receptor like 1 2 2
MIRT546206 TOR1AIP2 torsin 1A interacting protein 2 2 2
MIRT552270 RAB3D RAB3D, member RAS oncogene family 2 2
MIRT552655 ZADH2 zinc binding alcohol dehydrogenase domain containing 2 2 2
MIRT554134 SMARCA5 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 2 2
MIRT556795 KIAA1958 KIAA1958 2 2
MIRT564762 ZHX3 zinc fingers and homeoboxes 3 2 2
MIRT569428 STX7 syntaxin 7 2 2
MIRT573245 ZBTB46 zinc finger and BTB domain containing 46 2 2
MIRT607390 LANCL3 LanC like 3 2 2
MIRT607430 NOTCH2NL notch 2 N-terminal like 2 2
MIRT607452 ZNF543 zinc finger protein 543 2 2
MIRT607580 TANGO2 transport and golgi organization 2 homolog 2 2
MIRT607748 ANGPT4 angiopoietin 4 2 2
MIRT607907 SPRYD4 SPRY domain containing 4 2 2
MIRT608703 GMPR guanosine monophosphate reductase 2 2
MIRT612127 NDUFA10 NADH:ubiquinone oxidoreductase subunit A10 2 2
MIRT612786 MAP3K9 mitogen-activated protein kinase kinase kinase 9 2 4
MIRT616692 LPL lipoprotein lipase 2 2
MIRT617045 ZNF610 zinc finger protein 610 2 2
MIRT617091 ZNF43 zinc finger protein 43 2 2
MIRT617314 MBOAT1 membrane bound O-acyltransferase domain containing 1 2 2
MIRT617355 MELK maternal embryonic leucine zipper kinase 2 2
MIRT617486 ALG9 ALG9, alpha-1,2-mannosyltransferase 2 2
MIRT617579 NDUFB5 NADH:ubiquinone oxidoreductase subunit B5 2 2
MIRT617669 RSRC1 arginine and serine rich coiled-coil 1 2 2
MIRT617722 TRAPPC2 trafficking protein particle complex 2 2 4
MIRT617893 PTCHD3 patched domain containing 3 2 2
MIRT617982 ZNF234 zinc finger protein 234 2 4
MIRT618434 MYLK3 myosin light chain kinase 3 2 4
MIRT618732 HIST1H2AH histone cluster 1 H2A family member h 2 2
MIRT619045 CASS4 Cas scaffolding protein family member 4 2 2
MIRT619573 ATAT1 alpha tubulin acetyltransferase 1 2 4
MIRT619671 CYP1A2 cytochrome P450 family 1 subfamily A member 2 2 2
MIRT619887 ABHD17B abhydrolase domain containing 17B 2 2
MIRT620519 SNRPD1 small nuclear ribonucleoprotein D1 polypeptide 2 4
MIRT620535 AVPR1A arginine vasopressin receptor 1A 2 2
MIRT620996 C19orf52 translocase of inner mitochondrial membrane 29 2 2
MIRT621304 YIPF4 Yip1 domain family member 4 2 2
MIRT622086 SRPX2 sushi repeat containing protein, X-linked 2 2 2
MIRT622168 SMYD1 SET and MYND domain containing 1 2 2
MIRT622543 PXMP4 peroxisomal membrane protein 4 2 2
MIRT622761 PGM3 phosphoglucomutase 3 2 2
MIRT622885 PDCL3 phosducin like 3 2 4
MIRT623130 NDUFC2 NADH:ubiquinone oxidoreductase subunit C2 2 2
MIRT624840 ACAP2 ArfGAP with coiled-coil, ankyrin repeat and PH domains 2 2 2
MIRT625047 MBD3 methyl-CpG binding domain protein 3 2 2
MIRT625059 ZNF556 zinc finger protein 556 2 2
MIRT625508 PPAPDC1A phospholipid phosphatase 4 2 2
MIRT625573 ANKRD42 ankyrin repeat domain 42 2 2
MIRT626133 SNRNP48 small nuclear ribonucleoprotein U11/U12 subunit 48 2 2
MIRT626327 LRTOMT leucine rich transmembrane and O-methyltransferase domain containing 2 2
MIRT626765 CDC14B cell division cycle 14B 2 2
MIRT626798 CSE1L chromosome segregation 1 like 2 2
MIRT627212 ZC3H12B zinc finger CCCH-type containing 12B 2 2
MIRT627225 ZBTB8B zinc finger and BTB domain containing 8B 2 4
MIRT627256 XKR4 XK related 4 2 2
MIRT628190 GATSL2 cytosolic arginine sensor for mTORC1 subunit 2 2 2
MIRT628466 AHSA2 activator of HSP90 ATPase homolog 2 2 2
MIRT628627 CCT4 chaperonin containing TCP1 subunit 4 2 2
MIRT629040 KLLN killin, p53-regulated DNA replication inhibitor 2 2
MIRT630847 ACACB acetyl-CoA carboxylase beta 2 2
MIRT631721 RNASEH2B ribonuclease H2 subunit B 2 2
MIRT632264 USP1 ubiquitin specific peptidase 1 2 4
MIRT632571 POLQ DNA polymerase theta 2 2
MIRT633992 SLC35E2 solute carrier family 35 member E2 2 2
MIRT635211 ZNF286A zinc finger protein 286A 2 4
MIRT635249 ELOVL6 ELOVL fatty acid elongase 6 2 4
MIRT635261 FBXL20 F-box and leucine rich repeat protein 20 2 2
MIRT635283 GK5 glycerol kinase 5 (putative) 2 2
MIRT635663 DTX3L deltex E3 ubiquitin ligase 3L 2 2
MIRT636251 SEC63 SEC63 homolog, protein translocation regulator 2 2
MIRT636564 EPB41 erythrocyte membrane protein band 4.1 2 2
MIRT636814 TBC1D24 TBC1 domain family member 24 2 2
MIRT637358 ZNF460 zinc finger protein 460 2 2
MIRT637473 DEFB105B defensin beta 105B 2 4
MIRT637505 DEFB105A defensin beta 105A 2 4
MIRT637861 SC5D sterol-C5-desaturase 2 2
MIRT638080 ZNF652 zinc finger protein 652 2 2
MIRT638096 ZBTB8A zinc finger and BTB domain containing 8A 2 2
MIRT638174 TMED4 transmembrane p24 trafficking protein 4 2 2
MIRT638201 TAF13 TATA-box binding protein associated factor 13 2 2
MIRT638278 SH2B3 SH2B adaptor protein 3 2 2
MIRT638714 FUT11 fucosyltransferase 11 2 2
MIRT638852 CLMP CXADR like membrane protein 2 2
MIRT639815 TMED8 transmembrane p24 trafficking protein family member 8 2 2
MIRT640879 ENTPD1 ectonucleoside triphosphate diphosphohydrolase 1 2 2
MIRT640937 FAM129A family with sequence similarity 129 member A 2 2
MIRT640971 ORAI2 ORAI calcium release-activated calcium modulator 2 2 2
MIRT641642 GNAZ G protein subunit alpha z 2 2
MIRT641931 SLC25A16 solute carrier family 25 member 16 2 2
MIRT642136 CRY2 cryptochrome circadian clock 2 2 2
MIRT643199 JAK3 Janus kinase 3 2 2
MIRT643256 ZNF566 zinc finger protein 566 2 2
MIRT643378 TRIM16L tripartite motif containing 16 like 2 2
MIRT643683 AMER3 APC membrane recruitment protein 3 2 2
MIRT643728 MCMDC2 minichromosome maintenance domain containing 2 2 2
MIRT643949 CCDC141 coiled-coil domain containing 141 2 2
MIRT644915 SERF1B small EDRK-rich factor 1B 2 2
MIRT645163 NOL9 nucleolar protein 9 2 2
MIRT645547 PABPC1L2B poly(A) binding protein cytoplasmic 1 like 2B 2 2
MIRT645550 PABPC1L2A poly(A) binding protein cytoplasmic 1 like 2A 2 2
MIRT645572 TACR2 tachykinin receptor 2 2 2
MIRT646697 SERF1A small EDRK-rich factor 1A 2 2
MIRT647806 FRMD8 FERM domain containing 8 2 2
MIRT647903 CIRH1A UTP4, small subunit processome component 2 2
MIRT648978 ACAD8 acyl-CoA dehydrogenase family member 8 2 2
MIRT649907 SLFN12L schlafen family member 12 like 2 2
MIRT650224 SIGLEC9 sialic acid binding Ig like lectin 9 2 4
MIRT651880 UGGT1 UDP-glucose glycoprotein glucosyltransferase 1 2 2
MIRT651935 UBN1 ubinuclein 1 2 2
MIRT652839 TACO1 translational activator of cytochrome c oxidase I 2 2
MIRT652994 SUGT1 SGT1 homolog, MIS12 kinetochore complex assembly cochaperone 2 2
MIRT654800 PRICKLE1 prickle planar cell polarity protein 1 2 2
MIRT655591 OTUD7B OTU deubiquitinase 7B 2 2
MIRT658760 EIF4EBP2 eukaryotic translation initiation factor 4E binding protein 2 2 2
MIRT659358 CRKL CRK like proto-oncogene, adaptor protein 2 2
MIRT660717 AMER1 APC membrane recruitment protein 1 2 2
MIRT660737 ALG14 ALG14, UDP-N-acetylglucosaminyltransferase subunit 2 2
MIRT661088 TMEM145 transmembrane protein 145 2 2
MIRT661176 S1PR2 sphingosine-1-phosphate receptor 2 2 2
MIRT662005 ZNF445 zinc finger protein 445 2 2
MIRT662178 KIAA1210 KIAA1210 2 2
MIRT662270 OR51E2 olfactory receptor family 51 subfamily E member 2 2 2
MIRT663046 SLC16A4 solute carrier family 16 member 4 2 2
MIRT663476 POFUT2 protein O-fucosyltransferase 2 2 2
MIRT664039 RPL27A ribosomal protein L27a 2 2
MIRT664096 ZDHHC24 zinc finger DHHC-type containing 24 2 2
MIRT664109 FUT1 fucosyltransferase 1 (H blood group) 2 2
MIRT664317 CD209 CD209 molecule 2 2
MIRT664455 BBS5 Bardet-Biedl syndrome 5 2 2
MIRT664595 HSD17B12 hydroxysteroid 17-beta dehydrogenase 12 2 4
MIRT664694 DBF4 DBF4 zinc finger 2 2
MIRT665162 SF3A1 splicing factor 3a subunit 1 2 2
MIRT665214 RBM22 RNA binding motif protein 22 2 2
MIRT665254 ZNF286B zinc finger protein 286B 2 2
MIRT665268 ZFP69B ZFP69 zinc finger protein B 2 2
MIRT665606 TTC39A tetratricopeptide repeat domain 39A 2 2
MIRT665830 TIMELESS timeless circadian clock 2 2
MIRT666201 SMARCC1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 1 2 2
MIRT666546 RNF115 ring finger protein 115 2 2
MIRT666602 REEP3 receptor accessory protein 3 2 2
MIRT666862 POU2F3 POU class 2 homeobox 3 2 4
MIRT666886 POLA2 DNA polymerase alpha 2, accessory subunit 2 2
MIRT667158 NRXN3 neurexin 3 2 2
MIRT667252 NEK9 NIMA related kinase 9 2 2
MIRT667419 MFSD2A major facilitator superfamily domain containing 2A 2 2
MIRT667434 METTL8 methyltransferase like 8 2 2
MIRT668023 HAUS3 HAUS augmin like complex subunit 3 2 2
MIRT668062 GPR75 G protein-coupled receptor 75 2 2
MIRT668070 GOSR1 golgi SNAP receptor complex member 1 2 2
MIRT668607 EHD4 EH domain containing 4 2 4
MIRT668694 DNAL1 dynein axonemal light chain 1 2 2
MIRT668782 DAAM1 dishevelled associated activator of morphogenesis 1 2 2
MIRT669037 CHEK1 checkpoint kinase 1 2 2
MIRT669044 CHAF1B chromatin assembly factor 1 subunit B 2 4
MIRT669156 CCNG1 cyclin G1 2 2
MIRT670090 ABCF3 ATP binding cassette subfamily F member 3 2 4
MIRT670206 SLC24A4 solute carrier family 24 member 4 2 2
MIRT672488 FUS FUS RNA binding protein 2 2
MIRT673830 SLC11A2 solute carrier family 11 member 2 2 2
MIRT675481 VEGFC vascular endothelial growth factor C 2 2
MIRT675634 HACE1 HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1 2 2
MIRT677913 HIST1H2BN histone cluster 1 H2B family member n 2 2
MIRT678420 ANKRD36 ankyrin repeat domain 36 2 2
MIRT678626 OLFML2A olfactomedin like 2A 2 2
MIRT678791 NUPL2 nucleoporin like 2 2 2
MIRT679561 LIN9 lin-9 DREAM MuvB core complex component 2 2
MIRT680743 CA5B carbonic anhydrase 5B 2 2
MIRT682481 LIX1L limb and CNS expressed 1 like 2 4
MIRT682701 PSMD9 proteasome 26S subunit, non-ATPase 9 2 2
MIRT682759 MDM2 MDM2 proto-oncogene 2 2
MIRT682811 TMCO1 transmembrane and coiled-coil domains 1 2 2
MIRT682847 DNAJC28 DnaJ heat shock protein family (Hsp40) member C28 2 2
MIRT682896 XIAP X-linked inhibitor of apoptosis 2 2
MIRT682916 FAM73A mitoguardin 1 2 2
MIRT682935 ZNF292 zinc finger protein 292 2 2
MIRT682953 RPL12 ribosomal protein L12 2 2
MIRT682972 NF2 neurofibromin 2 2 2
MIRT683033 SUSD5 sushi domain containing 5 2 2
MIRT683081 A1BG alpha-1-B glycoprotein 2 2
MIRT683105 TIMM10B translocase of inner mitochondrial membrane 10B 2 2
MIRT686640 TMEM184C transmembrane protein 184C 2 2
MIRT687444 NR3C1 nuclear receptor subfamily 3 group C member 1 2 2
MIRT688401 EMC8 ER membrane protein complex subunit 8 2 2
MIRT688886 C3orf70 chromosome 3 open reading frame 70 2 2
MIRT689148 IRAK1BP1 interleukin 1 receptor associated kinase 1 binding protein 1 2 2
MIRT689234 RPS19 ribosomal protein S19 2 2
MIRT689306 C5AR2 complement component 5a receptor 2 2 2
MIRT689364 ZNF101 zinc finger protein 101 2 2
MIRT689498 SCARF1 scavenger receptor class F member 1 2 2
MIRT689655 RBM23 RNA binding motif protein 23 2 2
MIRT689897 SOD2 superoxide dismutase 2 2 2
MIRT690150 PPIL6 peptidylprolyl isomerase like 6 2 2
MIRT690601 C17orf105 chromosome 17 open reading frame 105 2 2
MIRT690805 FAHD1 fumarylacetoacetate hydrolase domain containing 1 2 2
MIRT690946 GLG1 golgi glycoprotein 1 2 2
MIRT691388 ATP13A4 ATPase 13A4 2 2
MIRT691408 DNA2 DNA replication helicase/nuclease 2 2 2
MIRT692175 LRRC3C leucine rich repeat containing 3C 2 2
MIRT692235 ALDH1B1 aldehyde dehydrogenase 1 family member B1 2 2
MIRT693283 GINM1 glycoprotein integral membrane 1 2 2
MIRT693439 TPGS1 tubulin polyglutamylase complex subunit 1 2 2
MIRT693460 HIST1H2AG histone cluster 1 H2A family member g 2 2
MIRT693768 ZNF383 zinc finger protein 383 2 2
MIRT694018 PPIL4 peptidylprolyl isomerase like 4 2 2
MIRT694236 ZNF749 zinc finger protein 749 2 2
MIRT694321 NLRP9 NLR family pyrin domain containing 9 2 2
MIRT694347 CHST6 carbohydrate sulfotransferase 6 2 2
MIRT694430 MCF2L2 MCF.2 cell line derived transforming sequence-like 2 2 2
MIRT695763 WDR35 WD repeat domain 35 2 2
MIRT696167 TIPIN TIMELESS interacting protein 2 2
MIRT696417 DOCK7 dedicator of cytokinesis 7 2 2
MIRT696543 C3 complement C3 2 2
MIRT696998 CCDC80 coiled-coil domain containing 80 2 2
MIRT697232 ZYG11A zyg-11 family member A, cell cycle regulator 2 2
MIRT697806 UBXN2A UBX domain protein 2A 2 2
MIRT697944 TVP23C trans-golgi network vesicle protein 23 homolog C 2 2
MIRT698161 TNFRSF13C TNF receptor superfamily member 13C 2 2
MIRT698778 STK4 serine/threonine kinase 4 2 2
MIRT700259 RBM12B RNA binding motif protein 12B 2 2
MIRT700970 PDK3 pyruvate dehydrogenase kinase 3 2 2
MIRT701251 NUP35 nucleoporin 35 2 2
MIRT701607 MYPN myopalladin 2 2
MIRT702457 KIAA1467 family with sequence similarity 234 member B 2 2
MIRT702613 ITPRIPL2 inositol 1,4,5-trisphosphate receptor interacting protein like 2 2 2
MIRT702691 IRGQ immunity related GTPase Q 2 2
MIRT702934 HMX3 H6 family homeobox 3 2 2
MIRT702991 HERPUD2 HERPUD family member 2 2 2
MIRT703148 GPR137C G protein-coupled receptor 137C 2 2
MIRT703980 EMC1 ER membrane protein complex subunit 1 2 2
MIRT704569 CLPX caseinolytic mitochondrial matrix peptidase chaperone subunit 2 2
MIRT705065 C4orf32 family with sequence similarity 241 member A 2 2
MIRT705447 ATL2 atlastin GTPase 2 2 2
MIRT705856 AFF3 AF4/FMR2 family member 3 2 2
MIRT705886 ADIPOR2 adiponectin receptor 2 2 2
MIRT714370 HP1BP3 heterochromatin protein 1 binding protein 3 2 2
MIRT715784 PHF12 PHD finger protein 12 2 2
MIRT715864 KIAA0101 PCNA clamp associated factor 2 2
MIRT715947 NUP93 nucleoporin 93 2 2
MIRT716132 THOC5 THO complex 5 2 2
MIRT717084 EBF4 early B-cell factor 4 2 2
MIRT725424 HNRNPA3 heterogeneous nuclear ribonucleoprotein A3 2 2
MIRT736091 GREM1 gremlin 1, DAN family BMP antagonist 3 0
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-4793 Dabrafenib 44462760 NSC764134 approved sensitive cell line (A375)
hsa-miR-4793-3p Gefitinib 123631 NSC715055 approved sensitive cell line (HCC827)
hsa-miR-4793-3p Doxorubicin 31703 NSC123127 approved resistant cell line (BAS)
hsa-miR-4793-3p Osimertinib 71496458 NSC779217 approved sensitive cell line (H1975)

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