pre-miRNA Information
pre-miRNA hsa-mir-4772   
Genomic Coordinates chr2: 102432289 - 102432366
Description Homo sapiens miR-4772 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-4772-3p
Sequence 48| CCUGCAACUUUGCCUGAUCAGA |69
Evidence Experimental
Experiments Illumina
Editing Events in miRNAs
Modification Type Position on miR Chromosome DNA Strand Genomic Position (hg38) List of PMIDs Variant details
A-to-I 6 2 + 102432341 29233923 MiREDiBase
A-to-I 7 2 + 102432342 23291724, 27587585, 29233923 MiREDiBase
A-to-I 20 2 + 102432355 29233923 MiREDiBase
A-to-I 22 2 + 102432357 29233923 MiREDiBase
DRVs in miRNA
Mutant ID Mutant Position Mutant Source
COSN28593220 7 COSMIC
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1256302752 1 dbSNP
rs1235136670 6 dbSNP
rs1321744784 8 dbSNP
rs1009816485 11 dbSNP
rs1022342638 21 dbSNP
Putative Targets

Gene Information
Gene Symbol CTCFL   
Synonyms BORIS, CT27, CTCF-T, HMGB1L1, dJ579F20.2
Description CCCTC-binding factor like
Transcript NM_080618   
Expression
Putative miRNA Targets on CTCFL
3'UTR of CTCFL
(miRNA target sites are highlighted)
>CTCFL|NM_080618|3'UTR
   1 GAGGGATTCGGGTTGCGTGTTCACTGCCCCCAATTCCTAAAGCAAGTTAGAAGTTTTTAGCATTTAAGGTGTGAAATGCT
  81 CCTCAACACGATGGATAAGTGAGAGAGAGTCAGGTTGCATGTTCACTGCCCCTAATTCCTAAAGCAAGTTAGAAATTTTT
 161 AGCATTTTCTTTGAAACAATTAAGTTCATGACAATGGATGACACAAGTTTGAGGTAGTGTCTAGAATTGTTCTCCTGTTT
 241 GTAGCTGGATATTTCAAAGAAACATTGCAGGTATTTTATAAAAGTTTTAAACCTTGAATGAGAGGGTAACACCTCAAACC
 321 TATGGATTCATTCACTTGATATTGGCAAGGTGGCCCACAATGAGTGAGTAGTGATTTTTGGATATTTCAAAATAGTCTAG
 401 ACCAGCTAGTGCTTCCACAGTCAAAGCTGGACATTTTTATGTTGCATTATATACACCCATGATATTTCTAATAATATATG
 481 GTTTTAAACATTAAAGACAAATGTTTTTATACAAATGAATTTTCTACAAAATTTAAAGCTACCATAATGCTTTTAATTAG
 561 TTCTAAATTCAACCAAAAAATGTTTTACTCTTATAAAAAGGAAAACTGAGTAGGAAATGAAATACTAGATTAGACTAGAA
 641 AATAAGGAATAAATCGATTTTACTTTGGTATAGGAGCAAGGTTCACCTTTAGATTTTTGTATTCTCTTTTAATTATGCTC
 721 CTTGGCAGGTATGAAATTGCCCTGGTTACATTCCATTATTGCTTATTAGTATTTCACTCCATAACCCTTTTTTCTGCTAA
 801 AACTACTCTTTTTATATTTGTAAAATAATTGGCAGAGTGAGAAGAAACATAAAATCAGATAAGGCAAATGTGTACCTGTA
 881 AGGAATTTGTACTTTTTCATAATGCCCAGTGATTAGTGAGTATTTCCCTTTTGCCAGTTGACAAGATTTTTCCACCCTCG
 961 AGCAGCGTGAGAGATGCCTCTTTAACACTTGAAATTCATTTCTATCTGGATACAGAGGCAGATTTTTCTTCATTGCTTAG
1041 TTGAGCAGTTTGTTTTGCTGCCAACCTGTCTCCACCCCTGTATTTCAAGATCATTGATAAGCCCTAAATTCAAATTCTTA
1121 AGATATGGACCTTTTATTGAAAATATCACAAGTTCAGAATCCCTATACAATGTGAATATGTGGAAATAATTTCCCAGCAG
1201 GAAGAGCATTATATTCTCTTTGTACCAGCAAATTAATTTAACTCAACTCACATGAGATTTAAATTCTGTGGGCTGTAGTA
1281 TGCCATCATTGTGACTGAATTTGTGCAATGGTTTCTTAATTTTTTTACTGTTATTTAAAGATGTTTTACATAATTCAATA
1361 AAATGAAATGACTTAAAATTGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' agACU-AGUC-CGUUUCAACGUcc 5'
            |||   || |: |:||||||  
Target 5' agTGAGAGAGAGTCAGGTTGCAtg 3'
98 - 121 132.00 -12.40
2
miRNA  3' agACUAGU-CCGUUUCAACGUcc 5'
            ||: ||   : | ||||||  
Target 5' gcTGGACATTTTTATGTTGCAtt 3'
426 - 448 124.00 -9.62
3
miRNA  3' agacuAG-UCCGUUUCAACGUCc 5'
               || | | ||  |||||| 
Target 5' atattTCAAAGAAACATTGCAGg 3'
249 - 271 121.00 -12.50
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSM5021255 3 COSMIC
COSN30178127 9 COSMIC
COSN31572305 10 COSMIC
COSN30144890 26 COSMIC
COSN30145180 27 COSMIC
COSN30106039 29 COSMIC
COSN30591182 68 COSMIC
COSN31589441 72 COSMIC
COSN30520169 107 COSMIC
COSN31611522 152 COSMIC
COSN31564970 154 COSMIC
COSN31609960 154 COSMIC
COSN30518079 162 COSMIC
COSN30138637 164 COSMIC
COSN7099115 190 COSMIC
COSN31575004 224 COSMIC
COSN1877527 268 COSMIC
COSN18842504 312 COSMIC
COSN20622447 600 COSMIC
COSN27142334 839 COSMIC
COSN30405218 1015 COSMIC
COSN8900023 1089 COSMIC
COSN22314607 1313 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs752275403 5 dbSNP
rs1273141847 8 dbSNP
rs202082891 9 dbSNP
rs751338436 10 dbSNP
rs28532211 11 dbSNP
rs371033221 16 dbSNP
rs765240764 17 dbSNP
rs898357712 19 dbSNP
rs377078570 20 dbSNP
rs201521015 23 dbSNP
rs746158810 27 dbSNP
rs774851229 33 dbSNP
rs771356359 34 dbSNP
rs749686106 37 dbSNP
rs778376448 43 dbSNP
rs779194326 44 dbSNP
rs756678721 46 dbSNP
rs1478345878 49 dbSNP
rs780807648 50 dbSNP
rs1480870338 58 dbSNP
rs1050692286 60 dbSNP
rs878935139 66 dbSNP
rs1405729334 80 dbSNP
rs1462992220 81 dbSNP
rs1196718573 85 dbSNP
rs945726514 89 dbSNP
rs892682297 94 dbSNP
rs1321834680 95 dbSNP
rs755021961 102 dbSNP
rs1239892828 103 dbSNP
rs936845524 107 dbSNP
rs974815529 110 dbSNP
rs1309863109 114 dbSNP
rs1235745999 118 dbSNP
rs541056155 118 dbSNP
rs964901507 119 dbSNP
rs764610001 120 dbSNP
rs1300181879 122 dbSNP
rs925470520 123 dbSNP
rs1207627593 130 dbSNP
rs1252268559 145 dbSNP
rs1437856302 152 dbSNP
rs980860484 179 dbSNP
rs112989819 182 dbSNP
rs1476139734 187 dbSNP
rs956506198 195 dbSNP
rs528687598 198 dbSNP
rs1459708371 203 dbSNP
rs1398884057 204 dbSNP
rs1392228364 212 dbSNP
rs780600677 219 dbSNP
rs560095339 226 dbSNP
rs918019196 228 dbSNP
rs1348768502 230 dbSNP
rs1303872612 239 dbSNP
rs7352116 246 dbSNP
rs992125686 251 dbSNP
rs535987706 261 dbSNP
rs182335197 263 dbSNP
rs1334568136 280 dbSNP
rs1175704418 283 dbSNP
rs1243097045 287 dbSNP
rs974427071 288 dbSNP
rs962557574 290 dbSNP
rs1194932960 294 dbSNP
rs1248913331 306 dbSNP
rs1440520067 308 dbSNP
rs6070120 313 dbSNP
rs1188519674 319 dbSNP
rs560339735 323 dbSNP
rs62204256 325 dbSNP
rs1373503221 331 dbSNP
rs1462673874 338 dbSNP
rs867011789 339 dbSNP
rs1167567915 342 dbSNP
rs1368706984 348 dbSNP
rs1006693195 352 dbSNP
rs1011938327 354 dbSNP
rs761207418 355 dbSNP
rs750904947 364 dbSNP
rs890843964 369 dbSNP
rs895007293 370 dbSNP
rs1029372752 389 dbSNP
rs544181360 390 dbSNP
rs11699556 392 dbSNP
rs891488552 393 dbSNP
rs41310004 396 dbSNP
rs1272079969 397 dbSNP
rs1349357281 400 dbSNP
rs544847461 403 dbSNP
rs1210955360 405 dbSNP
rs572660917 409 dbSNP
rs1279047863 418 dbSNP
rs1202052860 420 dbSNP
rs886356812 428 dbSNP
rs1047637088 432 dbSNP
rs1427703479 447 dbSNP
rs1254894253 454 dbSNP
rs1455784969 459 dbSNP
rs1174304377 461 dbSNP
rs930671279 465 dbSNP
rs904122773 471 dbSNP
rs1464934562 477 dbSNP
rs1045227499 482 dbSNP
rs114653600 493 dbSNP
rs943450501 500 dbSNP
rs1295929959 504 dbSNP
rs1372691624 505 dbSNP
rs187890231 513 dbSNP
rs917967827 519 dbSNP
rs1309945444 533 dbSNP
rs911953299 538 dbSNP
rs992278301 540 dbSNP
rs1261268281 541 dbSNP
rs1238440479 545 dbSNP
rs1206563791 547 dbSNP
rs183511213 548 dbSNP
rs1469988843 554 dbSNP
rs987648412 556 dbSNP
rs1314142570 559 dbSNP
rs1431544908 570 dbSNP
rs1161853038 572 dbSNP
rs537597245 581 dbSNP
rs1457217384 582 dbSNP
rs1318960646 588 dbSNP
rs918607805 590 dbSNP
rs1397221774 591 dbSNP
rs879004661 594 dbSNP
rs924898364 605 dbSNP
rs1324805847 612 dbSNP
rs1364823374 618 dbSNP
rs1224985708 623 dbSNP
rs8122634 624 dbSNP
rs962920441 628 dbSNP
rs968148848 633 dbSNP
rs1274796453 635 dbSNP
rs1335242812 638 dbSNP
rs191528832 639 dbSNP
rs1420332950 644 dbSNP
rs1487656992 647 dbSNP
rs1362722638 648 dbSNP
rs762392302 663 dbSNP
rs1178996152 665 dbSNP
rs1251423698 667 dbSNP
rs1472545014 669 dbSNP
rs1157610325 679 dbSNP
rs1420386402 680 dbSNP
rs1157010194 690 dbSNP
rs1163569045 691 dbSNP
rs2149285 694 dbSNP
rs1347730738 698 dbSNP
rs1443973264 699 dbSNP
rs985223054 699 dbSNP
rs1298244516 701 dbSNP
rs1372054586 704 dbSNP
rs1011838591 709 dbSNP
rs955249195 732 dbSNP
rs1029357042 738 dbSNP
rs1335182152 741 dbSNP
rs1232435454 742 dbSNP
rs1034691735 755 dbSNP
rs1003824759 765 dbSNP
rs1251909097 772 dbSNP
rs1182713181 782 dbSNP
rs886264260 786 dbSNP
rs1256288982 788 dbSNP
rs1048135756 792 dbSNP
rs112742152 794 dbSNP
rs11383018 794 dbSNP
rs1475846860 795 dbSNP
rs994743394 795 dbSNP
rs1181606193 803 dbSNP
rs1009968582 808 dbSNP
rs1412163123 820 dbSNP
rs955713877 826 dbSNP
rs1193777638 829 dbSNP
rs1369358670 831 dbSNP
rs1488948530 832 dbSNP
rs1314229420 844 dbSNP
rs1260610384 851 dbSNP
rs1355979407 855 dbSNP
rs147836166 857 dbSNP
rs999876701 871 dbSNP
rs904068415 875 dbSNP
rs1363837179 895 dbSNP
rs1039068769 904 dbSNP
rs1296596590 909 dbSNP
rs943319679 912 dbSNP
rs911983877 915 dbSNP
rs201313062 918 dbSNP
rs374760415 918 dbSNP
rs770826840 922 dbSNP
rs187043234 933 dbSNP
rs182773774 936 dbSNP
rs1476595784 945 dbSNP
rs117390757 946 dbSNP
rs1389145536 958 dbSNP
rs369641562 966 dbSNP
rs930028550 967 dbSNP
rs1375587298 986 dbSNP
rs1413782832 993 dbSNP
rs1391234124 1000 dbSNP
rs916128670 1002 dbSNP
rs1456150507 1009 dbSNP
rs1431227537 1011 dbSNP
rs918694435 1014 dbSNP
rs959029592 1020 dbSNP
rs1478551197 1021 dbSNP
rs1226548919 1039 dbSNP
rs1305700273 1043 dbSNP
rs1345823608 1044 dbSNP
rs1219086469 1057 dbSNP
rs6128056 1058 dbSNP
rs879932721 1061 dbSNP
rs1038744637 1064 dbSNP
rs1034765613 1069 dbSNP
rs1216917338 1076 dbSNP
rs1003279502 1093 dbSNP
rs941375984 1094 dbSNP
rs1026163901 1095 dbSNP
rs549713299 1102 dbSNP
rs765024113 1103 dbSNP
rs1395094348 1109 dbSNP
rs1477429106 1125 dbSNP
rs995048406 1126 dbSNP
rs1410036729 1128 dbSNP
rs1212040456 1130 dbSNP
rs1401256066 1132 dbSNP
rs1487670942 1135 dbSNP
rs1319634360 1142 dbSNP
rs1386257789 1144 dbSNP
rs529592333 1146 dbSNP
rs1328179011 1158 dbSNP
rs1331712165 1162 dbSNP
rs985375181 1165 dbSNP
rs955193703 1171 dbSNP
rs1273196884 1172 dbSNP
rs1353466867 1187 dbSNP
rs922461409 1211 dbSNP
rs1229611369 1213 dbSNP
rs1007607053 1216 dbSNP
rs988621065 1218 dbSNP
rs955952249 1241 dbSNP
rs1215138918 1252 dbSNP
rs1052310568 1253 dbSNP
rs1450729341 1254 dbSNP
rs1196085373 1258 dbSNP
rs563987633 1259 dbSNP
rs559722063 1274 dbSNP
rs1158350855 1275 dbSNP
rs934744176 1281 dbSNP
rs1462845962 1284 dbSNP
rs1165443638 1288 dbSNP
rs903244465 1291 dbSNP
rs1386491232 1300 dbSNP
rs1321657184 1303 dbSNP
rs770919139 1308 dbSNP
rs1337628392 1313 dbSNP
rs1043244815 1318 dbSNP
rs746738566 1320 dbSNP
rs1235497101 1327 dbSNP
rs1348968249 1327 dbSNP
rs916203656 1330 dbSNP
rs991693620 1332 dbSNP
rs758106197 1334 dbSNP
rs937705111 1337 dbSNP
rs1000230362 1349 dbSNP
rs969789018 1350 dbSNP
rs1332041205 1352 dbSNP
rs1483098903 1358 dbSNP
rs550352987 1364 dbSNP
rs1249556671 1376 dbSNP
rs982159685 1384 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HEK293S
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in GSM1084065. RNA binding protein: AGO2. Condition:CLIP_emetine_AbnovaAb HITS-CLIP data was present in GSM1084073. RNA binding protein: AGO2. Condition:CLIP_hippuristanol_rep1_AbnovaAb HITS-CLIP data was present in GSM1084078. RNA binding protein: AGO2. Condition:CLIP_nohippuristanol_rep2_AbnovaAb ...

- Karginov FV; Hannon GJ, 2013, Genes & development.

Article - Karginov FV; Hannon GJ
- Genes & development, 2013
When adapting to environmental stress, cells attenuate and reprogram their translational output. In part, these altered translation profiles are established through changes in the interactions between RNA-binding proteins and mRNAs. The Argonaute 2 (Ago2)/microRNA (miRNA) machinery has been shown to participate in stress-induced translational up-regulation of a particular mRNA, CAT-1; however, a detailed, transcriptome-wide understanding of the involvement of Ago2 in the process has been lacking. Here, we profiled the overall changes in Ago2-mRNA interactions upon arsenite stress by cross-linking immunoprecipitation (CLIP) followed by high-throughput sequencing (CLIP-seq). Ago2 displayed a significant remodeling of its transcript occupancy, with the majority of 3' untranslated region (UTR) and coding sequence (CDS) sites exhibiting stronger interaction. Interestingly, target sites that were destined for release from Ago2 upon stress were depleted in miRNA complementarity signatures, suggesting an alternative mode of interaction. To compare the changes in Ago2-binding patterns across transcripts with changes in their translational states, we measured mRNA profiles on ribosome/polysome gradients by RNA sequencing (RNA-seq). Increased Ago2 occupancy correlated with stronger repression of translation for those mRNAs, as evidenced by a shift toward lighter gradient fractions upon stress, while release of Ago2 was associated with the limited number of transcripts that remained translated. Taken together, these data point to a role for Ago2 and the mammalian miRNAs in mediating the translational component of the stress response.
LinkOut: [PMID: 23824327]
CLIP-seq Support 1 for dataset GSM1084065
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_emetine_AbnovaAb
Location of target site ENST00000608903.1 | 3UTR | GACAGAGGUUGCAGUGAGCUGAGAUU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM1084073
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_hippuristanol_rep1_AbnovaAb
Location of target site ENST00000608903.1 | 3UTR | ACAGAGGUUGCAGUGAGCUGAGAUUGU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
CLIP-seq Support 3 for dataset GSM1084078
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_nohippuristanol_rep2_AbnovaAb
Location of target site ENST00000608903.1 | 3UTR | GACAGAGGUUGCAGUGAGCUGAGA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
313 hsa-miR-4772-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT079462 RAB40B RAB40B, member RAS oncogene family 2 2
MIRT092011 SNRK SNF related kinase 2 10
MIRT259504 TXLNG taxilin gamma 2 2
MIRT286668 ZNF207 zinc finger protein 207 2 2
MIRT393055 RSBN1L round spermatid basic protein 1 like 2 2
MIRT443335 NRAS NRAS proto-oncogene, GTPase 2 2
MIRT443430 MAPT microtubule associated protein tau 2 2
MIRT454267 PSMA1 proteasome subunit alpha 1 2 2
MIRT461774 MPDU1 mannose-P-dolichol utilization defect 1 2 2
MIRT473561 MATR3 matrin 3 2 2
MIRT495678 PRKD3 protein kinase D3 2 2
MIRT502649 DCTN5 dynactin subunit 5 2 8
MIRT503958 ZNF180 zinc finger protein 180 2 6
MIRT504114 GPR158 G protein-coupled receptor 158 2 2
MIRT513556 IL5 interleukin 5 2 2
MIRT529025 EXOC8 exocyst complex component 8 2 2
MIRT530632 PPIC peptidylprolyl isomerase C 2 4
MIRT536889 HIC2 HIC ZBTB transcriptional repressor 2 2 2
MIRT537224 GATA6 GATA binding protein 6 2 6
MIRT539006 AVL9 AVL9 cell migration associated 2 2
MIRT539129 ARHGEF17 Rho guanine nucleotide exchange factor 17 2 2
MIRT539572 CNKSR3 CNKSR family member 3 2 2
MIRT556145 MED12L mediator complex subunit 12 like 2 2
MIRT559481 ARL8A ADP ribosylation factor like GTPase 8A 2 2
MIRT560095 ERCC8 ERCC excision repair 8, CSA ubiquitin ligase complex subunit 2 2
MIRT561661 RNF11 ring finger protein 11 2 4
MIRT569672 SEC23B Sec23 homolog B, coat complex II component 2 4
MIRT571883 MSL2 MSL complex subunit 2 2 2
MIRT575071 Ets1 E26 avian leukemia oncogene 1, 5' domain 2 4
MIRT607053 IDS iduronate 2-sulfatase 2 2
MIRT607801 RHBDL2 rhomboid like 2 2 4
MIRT608145 SYAP1 synapse associated protein 1 2 4
MIRT609242 SERPINA4 serpin family A member 4 2 2
MIRT612060 PDGFRA platelet derived growth factor receptor alpha 2 2
MIRT615120 BCL11B B-cell CLL/lymphoma 11B 2 2
MIRT617270 EXOSC10 exosome component 10 2 2
MIRT617684 MAPKBP1 mitogen-activated protein kinase binding protein 1 2 2
MIRT618063 ZNF799 zinc finger protein 799 2 2
MIRT618101 PPP5D1 PPP5 tetratricopeptide repeat domain containing 1 2 2
MIRT618487 DENND5B DENN domain containing 5B 2 4
MIRT618801 SPATA21 spermatogenesis associated 21 2 2
MIRT618907 CDK9 cyclin dependent kinase 9 2 2
MIRT619392 RSPH3 radial spoke head 3 homolog 2 2
MIRT619896 NPTXR neuronal pentraxin receptor 2 2
MIRT620069 ZNF85 zinc finger protein 85 2 2
MIRT620085 TNFAIP8L1 TNF alpha induced protein 8 like 1 2 2
MIRT620782 IL10RB interleukin 10 receptor subunit beta 2 2
MIRT620859 SERPING1 serpin family G member 1 2 2
MIRT621161 RTTN rotatin 2 2
MIRT621217 LILRA2 leukocyte immunoglobulin like receptor A2 2 2
MIRT623445 KDM5A lysine demethylase 5A 2 2
MIRT623639 IDE insulin degrading enzyme 2 2
MIRT624190 DDX19B DEAD-box helicase 19B 2 2
MIRT624699 AQR aquarius intron-binding spliceosomal factor 2 2
MIRT624906 CTCFL CCCTC-binding factor like 2 2
MIRT624954 SERF2 small EDRK-rich factor 2 2 2
MIRT625026 ZNF730 zinc finger protein 730 2 2
MIRT625117 SLC1A5 solute carrier family 1 member 5 2 2
MIRT625129 NUP93 nucleoporin 93 2 2
MIRT625145 ITPRIPL1 inositol 1,4,5-trisphosphate receptor interacting protein-like 1 2 2
MIRT625259 ZNF566 zinc finger protein 566 2 2
MIRT625280 PNPT1 polyribonucleotide nucleotidyltransferase 1 2 2
MIRT625331 TNFRSF13B TNF receptor superfamily member 13B 2 2
MIRT625466 ZNF135 zinc finger protein 135 2 2
MIRT625525 FGFR1 fibroblast growth factor receptor 1 2 2
MIRT625724 CXorf38 chromosome X open reading frame 38 2 2
MIRT625834 NXPE2 neurexophilin and PC-esterase domain family member 2 2 2
MIRT625905 LINC00632 long intergenic non-protein coding RNA 632 2 2
MIRT626017 XRCC2 X-ray repair cross complementing 2 2 2
MIRT626048 PDE4C phosphodiesterase 4C 2 2
MIRT626166 RRP1B ribosomal RNA processing 1B 2 2
MIRT626171 DNAJB13 DnaJ heat shock protein family (Hsp40) member B13 2 2
MIRT626348 PACS1 phosphofurin acidic cluster sorting protein 1 2 2
MIRT626362 DIS3L DIS3 like exosome 3'-5' exoribonuclease 2 2
MIRT626442 SRSF7 serine and arginine rich splicing factor 7 2 2
MIRT626532 EMCN endomucin 2 2
MIRT626575 MED7 mediator complex subunit 7 2 2
MIRT626639 ZNF551 zinc finger protein 551 2 2
MIRT626666 NOM1 nucleolar protein with MIF4G domain 1 2 2
MIRT626681 CISD2 CDGSH iron sulfur domain 2 2 2
MIRT626772 PI4K2B phosphatidylinositol 4-kinase type 2 beta 2 2
MIRT626788 KCNK6 potassium two pore domain channel subfamily K member 6 2 2
MIRT626821 PRR11 proline rich 11 2 2
MIRT626831 ZNF430 zinc finger protein 430 2 2
MIRT626884 PTCD3 pentatricopeptide repeat domain 3 2 2
MIRT626941 TTR transthyretin 2 2
MIRT626960 LINC00598 long intergenic non-protein coding RNA 598 2 2
MIRT627454 SYNRG synergin gamma 2 2
MIRT627788 RAB11FIP1 RAB11 family interacting protein 1 2 2
MIRT627821 PRKAR2A protein kinase cAMP-dependent type II regulatory subunit alpha 2 2
MIRT627949 NMNAT1 nicotinamide nucleotide adenylyltransferase 1 2 2
MIRT627998 MELK maternal embryonic leucine zipper kinase 2 2
MIRT628019 MAP7 microtubule associated protein 7 2 2
MIRT628051 KIAA1468 KIAA1468 2 2
MIRT628129 HMGB1 high mobility group box 1 2 4
MIRT628143 HM13 histocompatibility minor 13 2 2
MIRT628237 FADS1 fatty acid desaturase 1 2 2
MIRT628794 A2ML1 alpha-2-macroglobulin like 1 2 2
MIRT628874 FAM177A1 family with sequence similarity 177 member A1 2 4
MIRT629251 KDM2B lysine demethylase 2B 2 2
MIRT629320 ZNF487P zinc finger protein 487 1 1
MIRT629361 IRAK4 interleukin 1 receptor associated kinase 4 2 2
MIRT629800 GPR82 G protein-coupled receptor 82 2 2
MIRT629919 POLR2D RNA polymerase II subunit D 2 2
MIRT630099 DCAF10 DDB1 and CUL4 associated factor 10 2 2
MIRT630487 DHTKD1 dehydrogenase E1 and transketolase domain containing 1 2 2
MIRT630722 FPR1 formyl peptide receptor 1 2 2
MIRT631018 DNAJC22 DnaJ heat shock protein family (Hsp40) member C22 2 2
MIRT631073 ZNF829 zinc finger protein 829 2 2
MIRT631230 C7orf65 chromosome 7 open reading frame 65 2 2
MIRT631248 ABCB5 ATP binding cassette subfamily B member 5 2 2
MIRT631680 NQO2 N-ribosyldihydronicotinamide:quinone reductase 2 2 2
MIRT631780 IL17RA interleukin 17 receptor A 2 2
MIRT632044 ATF7IP activating transcription factor 7 interacting protein 2 2
MIRT632132 AKR7A2 aldo-keto reductase family 7 member A2 2 2
MIRT632202 ZKSCAN1 zinc finger with KRAB and SCAN domains 1 2 2
MIRT632410 SLC30A5 solute carrier family 30 member 5 2 2
MIRT632523 PSMB2 proteasome subunit beta 2 2 2
MIRT632547 PRPF4 pre-mRNA processing factor 4 2 2
MIRT632702 MTA3 metastasis associated 1 family member 3 2 2
MIRT633134 C6orf132 chromosome 6 open reading frame 132 2 2
MIRT633365 FAM71F2 family with sequence similarity 71 member F2 2 2
MIRT633551 ATAD3C ATPase family, AAA domain containing 3C 2 2
MIRT633698 LRRC8B leucine rich repeat containing 8 VRAC subunit B 2 2
MIRT633793 SOX7 SRY-box 7 2 2
MIRT634512 NKAP NFKB activating protein 2 2
MIRT634830 ARHGEF39 Rho guanine nucleotide exchange factor 39 2 2
MIRT634917 RBM4B RNA binding motif protein 4B 2 2
MIRT634972 C8orf17 chromosome 8 open reading frame 17 2 2
MIRT635107 MAVS mitochondrial antiviral signaling protein 2 2
MIRT635199 FXN frataxin 2 2
MIRT635407 KIAA1614 KIAA1614 2 2
MIRT635417 CAPZA2 capping actin protein of muscle Z-line alpha subunit 2 2 2
MIRT635433 LRP10 LDL receptor related protein 10 2 2
MIRT635484 ST3GAL2 ST3 beta-galactoside alpha-2,3-sialyltransferase 2 2 2
MIRT635513 C1orf64 steroid receptor associated and regulated protein 2 2
MIRT635617 ZNF439 zinc finger protein 439 2 2
MIRT635639 TRMT10B tRNA methyltransferase 10B 2 2
MIRT635736 IFNAR1 interferon alpha and beta receptor subunit 1 2 2
MIRT635897 SP110 SP110 nuclear body protein 2 2
MIRT635936 PLA2G12A phospholipase A2 group XIIA 2 2
MIRT636019 GNPNAT1 glucosamine-phosphate N-acetyltransferase 1 2 2
MIRT636277 RFFL ring finger and FYVE like domain containing E3 ubiquitin protein ligase 2 2
MIRT636287 RAD51L3-RFFL RAD51L3-RFFL readthrough 2 2
MIRT636344 PHAX phosphorylated adaptor for RNA export 2 2
MIRT636472 KLHL7 kelch like family member 7 2 2
MIRT636893 C5orf45 MRN complex interacting protein 2 2
MIRT636984 ZNF561 zinc finger protein 561 2 2
MIRT637041 FITM2 fat storage inducing transmembrane protein 2 2 2
MIRT637148 PCDHA6 protocadherin alpha 6 2 4
MIRT637369 ORAI2 ORAI calcium release-activated calcium modulator 2 2 4
MIRT637379 HINFP histone H4 transcription factor 2 2
MIRT637399 ZNF546 zinc finger protein 546 2 2
MIRT637721 MYOZ3 myozenin 3 2 2
MIRT637771 PDLIM3 PDZ and LIM domain 3 2 2
MIRT637905 FAM153B family with sequence similarity 153 member B 2 2
MIRT638129 UBXN7 UBX domain protein 7 2 2
MIRT638564 IFNE interferon epsilon 2 2
MIRT638581 HYPK huntingtin interacting protein K 2 2
MIRT638792 EDARADD EDAR associated death domain 2 2
MIRT638945 BMPR2 bone morphogenetic protein receptor type 2 2 2
MIRT640676 ARSK arylsulfatase family member K 2 2
MIRT641734 TXNL1 thioredoxin like 1 2 2
MIRT642163 ZBTB25 zinc finger and BTB domain containing 25 2 2
MIRT642512 ORC6 origin recognition complex subunit 6 2 2
MIRT642622 CDKN3 cyclin dependent kinase inhibitor 3 2 2
MIRT642701 FGFR1OP2 FGFR1 oncogene partner 2 2 2
MIRT643550 C11orf70 chromosome 11 open reading frame 70 2 2
MIRT643868 COX20 COX20, cytochrome c oxidase assembly factor 2 2
MIRT643936 WIPF3 WAS/WASL interacting protein family member 3 2 2
MIRT644034 CENPM centromere protein M 2 2
MIRT644595 SPOP speckle type BTB/POZ protein 2 2
MIRT644693 ZNF320 zinc finger protein 320 2 2
MIRT645122 HES2 hes family bHLH transcription factor 2 2 2
MIRT645614 TSPAN6 tetraspanin 6 2 2
MIRT646260 IBA57 IBA57 homolog, iron-sulfur cluster assembly 2 2
MIRT646994 ZNF621 zinc finger protein 621 2 2
MIRT647549 CYP2B6 cytochrome P450 family 2 subfamily B member 6 2 2
MIRT648479 CMBL carboxymethylenebutenolidase homolog 2 2
MIRT649069 HSD17B12 hydroxysteroid 17-beta dehydrogenase 12 2 2
MIRT649244 TRIM65 tripartite motif containing 65 2 2
MIRT649301 IGSF6 immunoglobulin superfamily member 6 2 2
MIRT650124 G6PC glucose-6-phosphatase catalytic subunit 2 2
MIRT650167 USHBP1 USH1 protein network component harmonin binding protein 1 2 2
MIRT651263 ZKSCAN4 zinc finger with KRAB and SCAN domains 4 2 2
MIRT652140 TRPM7 transient receptor potential cation channel subfamily M member 7 2 2
MIRT652159 TRIM66 tripartite motif containing 66 2 2
MIRT652673 TIMELESS timeless circadian clock 2 2
MIRT654237 RNF115 ring finger protein 115 2 2
MIRT655229 PEX5L peroxisomal biogenesis factor 5 like 2 2
MIRT655255 PEX26 peroxisomal biogenesis factor 26 2 2
MIRT656064 MTMR10 myotubularin related protein 10 2 2
MIRT656575 LSM10 LSM10, U7 small nuclear RNA associated 2 2
MIRT656754 LDHA lactate dehydrogenase A 2 2
MIRT657687 GPR155 G protein-coupled receptor 155 2 2
MIRT657811 GJD3 gap junction protein delta 3 2 2
MIRT658403 FAM212B family with sequence similarity 212 member B 2 2
MIRT660211 BMPR1A bone morphogenetic protein receptor type 1A 2 2
MIRT660241 BMP7 bone morphogenetic protein 7 2 2
MIRT660450 ATG14 autophagy related 14 2 2
MIRT660546 ARHGAP29 Rho GTPase activating protein 29 2 2
MIRT660620 ANKS4B ankyrin repeat and sterile alpha motif domain containing 4B 2 2
MIRT660759 ALDH6A1 aldehyde dehydrogenase 6 family member A1 2 2
MIRT660987 ABHD2 abhydrolase domain containing 2 2 2
MIRT661037 HIATL2 major facilitator superfamily domain containing 14C 2 2
MIRT661047 RABAC1 Rab acceptor 1 2 2
MIRT661076 FFAR2 free fatty acid receptor 2 2 2
MIRT661152 ZNF101 zinc finger protein 101 2 2
MIRT661278 APOPT1 apoptogenic 1, mitochondrial 2 2
MIRT661521 NWD1 NACHT and WD repeat domain containing 1 2 2
MIRT661710 MTO1 mitochondrial tRNA translation optimization 1 2 2
MIRT661721 KLF8 Kruppel like factor 8 2 3
MIRT661730 RAB9A RAB9A, member RAS oncogene family 2 2
MIRT662240 PGBD4 piggyBac transposable element derived 4 2 2
MIRT662337 MYLK3 myosin light chain kinase 3 2 2
MIRT662450 SEMA5A semaphorin 5A 2 2
MIRT662743 LRRC3C leucine rich repeat containing 3C 2 2
MIRT662769 HIST1H2AH histone cluster 1 H2A family member h 2 2
MIRT663012 KIAA1586 KIAA1586 2 2
MIRT663098 THEM4 thioesterase superfamily member 4 2 2
MIRT663800 BET1L Bet1 golgi vesicular membrane trafficking protein like 2 2
MIRT663878 CXorf56 chromosome X open reading frame 56 2 2
MIRT664679 TMEM19 transmembrane protein 19 2 2
MIRT664695 DBF4 DBF4 zinc finger 2 2
MIRT664762 MESDC2 mesoderm development LRP chaperone 2 2
MIRT664774 LIAS lipoic acid synthetase 2 2
MIRT664907 PDE6A phosphodiesterase 6A 2 2
MIRT664925 BHMT2 betaine--homocysteine S-methyltransferase 2 2 2
MIRT665244 ZNF384 zinc finger protein 384 2 2
MIRT665529 USP14 ubiquitin specific peptidase 14 2 2
MIRT665535 UROS uroporphyrinogen III synthase 2 2
MIRT665630 TSHZ2 teashirt zinc finger homeobox 2 2 2
MIRT665808 TMEM168 transmembrane protein 168 2 2
MIRT666151 SP2 Sp2 transcription factor 2 2
MIRT666649 RBM48 RNA binding motif protein 48 2 2
MIRT667212 NIPAL1 NIPA like domain containing 1 2 2
MIRT667514 LUC7L2 LUC7 like 2, pre-mRNA splicing factor 2 2
MIRT667541 LRIG2 leucine rich repeats and immunoglobulin like domains 2 2 2
MIRT667962 HEYL hes related family bHLH transcription factor with YRPW motif-like 2 2
MIRT668004 HCFC2 host cell factor C2 2 2
MIRT668101 GK5 glycerol kinase 5 (putative) 2 2
MIRT668151 GDE1 glycerophosphodiester phosphodiesterase 1 2 2
MIRT668254 FUT11 fucosyltransferase 11 2 2
MIRT668424 FAM20B FAM20B, glycosaminoglycan xylosylkinase 2 2
MIRT668468 FADS6 fatty acid desaturase 6 2 2
MIRT668849 CYCS cytochrome c, somatic 2 2
MIRT668985 CIAO1 cytosolic iron-sulfur assembly component 1 2 2
MIRT669020 MPZ myelin protein zero 2 2
MIRT669232 C7orf55-LUC7L2 C7orf55-LUC7L2 readthrough 2 2
MIRT671099 ZNF665 zinc finger protein 665 2 2
MIRT671496 SLC38A9 solute carrier family 38 member 9 2 2
MIRT672717 TMIGD2 transmembrane and immunoglobulin domain containing 2 2 2
MIRT672909 KRBA2 KRAB-A domain containing 2 2 2
MIRT672962 ZNF655 zinc finger protein 655 2 2
MIRT673609 HPSE heparanase 2 2
MIRT673740 TCF23 transcription factor 23 2 2
MIRT673755 ZNF333 zinc finger protein 333 2 2
MIRT673780 PROSER2 proline and serine rich 2 2 2
MIRT674217 FAM120AOS family with sequence similarity 120A opposite strand 2 2
MIRT674343 KCMF1 potassium channel modulatory factor 1 2 2
MIRT674756 QRSL1 glutaminyl-tRNA synthase (glutamine-hydrolyzing)-like 1 2 2
MIRT674811 FAM229B family with sequence similarity 229 member B 2 2
MIRT675173 BPTF bromodomain PHD finger transcription factor 2 2
MIRT675265 ZNF431 zinc finger protein 431 2 2
MIRT675954 FOXK1 forkhead box K1 2 2
MIRT676155 OGFOD1 2-oxoglutarate and iron dependent oxygenase domain containing 1 2 2
MIRT676195 GSTM3 glutathione S-transferase mu 3 2 2
MIRT676437 PLEKHM3 pleckstrin homology domain containing M3 2 2
MIRT676466 RACGAP1 Rac GTPase activating protein 1 2 2
MIRT676563 VSIG1 V-set and immunoglobulin domain containing 1 2 2
MIRT676715 METTL14 methyltransferase like 14 2 2
MIRT677197 MURC caveolae associated protein 4 2 2
MIRT677276 SNRPD1 small nuclear ribonucleoprotein D1 polypeptide 2 4
MIRT677350 POC1A POC1 centriolar protein A 2 2
MIRT677507 SLC10A6 solute carrier family 10 member 6 2 2
MIRT677552 C19orf52 translocase of inner mitochondrial membrane 29 2 2
MIRT677621 ALG1 ALG1, chitobiosyldiphosphodolichol beta-mannosyltransferase 2 2
MIRT677690 SCO1 SCO1, cytochrome c oxidase assembly protein 2 2
MIRT677748 GNB4 G protein subunit beta 4 2 2
MIRT678106 MICA MHC class I polypeptide-related sequence A 2 2
MIRT678336 MCTS1 MCTS1, re-initiation and release factor 2 2
MIRT678454 GLYAT glycine-N-acyltransferase 2 2
MIRT678472 RNF222 ring finger protein 222 2 2
MIRT678560 BPNT1 3'(2'), 5'-bisphosphate nucleotidase 1 2 2
MIRT679302 SSBP2 single stranded DNA binding protein 2 2 2
MIRT679371 GP2 glycoprotein 2 2 2
MIRT679380 WDR92 WD repeat domain 92 2 2
MIRT679575 UGGT1 UDP-glucose glycoprotein glucosyltransferase 1 2 2
MIRT679683 ALDOA aldolase, fructose-bisphosphate A 2 2
MIRT679876 SLC25A51 solute carrier family 25 member 51 2 2
MIRT680092 ETS1 ETS proto-oncogene 1, transcription factor 2 5
MIRT680470 C3 complement C3 2 2
MIRT683082 A1BG alpha-1-B glycoprotein 2 2
MIRT683905 PSMB9 proteasome subunit beta 9 2 2
MIRT684177 MOG myelin oligodendrocyte glycoprotein 2 2
MIRT686213 ZNF267 zinc finger protein 267 2 2
MIRT688737 CNDP1 carnosine dipeptidase 1 2 2
MIRT689035 ANGPTL3 angiopoietin like 3 2 2
MIRT690683 PTCHD3 patched domain containing 3 2 2
MIRT697761 USP37 ubiquitin specific peptidase 37 2 2
MIRT704407 CTPS1 CTP synthase 1 2 2
MIRT705016 CAMK2N1 calcium/calmodulin dependent protein kinase II inhibitor 1 2 2
MIRT709567 GYG2 glycogenin 2 2 2
MIRT709955 TRUB2 TruB pseudouridine synthase family member 2 2 2
MIRT710001 TXNDC12 thioredoxin domain containing 12 2 2
MIRT710219 JMJD4 jumonji domain containing 4 2 2
MIRT710478 CDH5 cadherin 5 2 2
MIRT713074 ENTHD1 ENTH domain containing 1 2 2
MIRT713890 RNF19B ring finger protein 19B 2 2
MIRT715337 HS3ST1 heparan sulfate-glucosamine 3-sulfotransferase 1 2 2
MIRT715989 ACOT2 acyl-CoA thioesterase 2 2 2
MIRT720098 SPTLC3 serine palmitoyltransferase long chain base subunit 3 2 2
MIRT720981 METTL21A methyltransferase like 21A 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-4772-3p Cisplatin 5460033 NSC119875 approved sensitive cell line (A2780)

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