pre-miRNA Information
pre-miRNA hsa-mir-3120   
Genomic Coordinates chr1: 172138808 - 172138888
Description Homo sapiens miR-3120 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-3120-5p
Sequence 13| CCUGUCUGUGCCUGCUGUACA |33
Evidence Experimental
Experiments Illumina
Editing Events in miRNAs
Modification Type Position on miR Chromosome DNA Strand Genomic Position (hg38) List of PMIDs Variant details
A-to-I 19 1 + 172138838 26449202, 27587585 MiREDiBase
DRVs in miRNA
Mutant ID Mutant Position Mutant Source
COSN26637643 8 COSMIC
COSN31603497 11 COSMIC
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs750386761 8 dbSNP
rs760725207 9 dbSNP
rs766486759 10 dbSNP
rs754055278 12 dbSNP
rs755288536 19 dbSNP
rs754726014 21 dbSNP
Putative Targets

Gene Information
Gene Symbol SPC24   
Synonyms SPBC24
Description SPC24, NDC80 kinetochore complex component
Transcript NM_182513   
Expression
Putative miRNA Targets on SPC24
3'UTR of SPC24
(miRNA target sites are highlighted)
>SPC24|NM_182513|3'UTR
   1 CCAGGAGCCTCGTGGCTGCGTCTTGCACCCAGCGGGCATCTGCCGTGGTCAGATCCATTTCAAATGAAATGTGGGGACAT
  81 AGATCTTTTTTTTTTTTTTTTTGAGACAGAGTTTCACTCTTGTTGTCCAGTCTGGAGTGCAATGGCACAATCTCAGCTCA
 161 CAGCAACCTCTGCCTCCTGGGTTCAAGCGATTCTCCTGCCTCAGCCTCCAAAGTAGCTGGGATTACAGGCATGCGCCACC
 241 ACACCCAGCTAATTTTTTGTATTTGGTAGAGATGGAGTTTCACCATGGTGGTCAGGCTGGTCTTGAACTCCTGACCTCAG
 321 GTGATCCACCCGCCCGCCTTGGCCTCCCAAAGTGCTAGGATTCCAGGCGTGAGCCATCGTGCCCAGCTAGACGTCTTCCT
 401 TTTTTTTTTTTTTTTGAGACGGAGTCTCACTCTGTCGCCCAGGCTGGAGTGCAGTGGTGCGATCTCAGCTCACTGCAAGC
 481 TCCGCCTCCTCCCGGGTTCACGCCATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGACTACAGGCACCTGCCACCATGCG
 561 CAGCTAATTTTTTGTATTTTTAGTAGAGACGGGGTTTCACCATGTTAGACAGGATGGTCTCCATCTCCTGAGTTTGTGAT
 641 CTGCCCGCCTTGGCCTCCCAAAGTGCTGGGATTACAGGTGTGAGTCACCGCGCCTGGCCTTTTTTTTTTTTTTTTTTACT
 721 GGATTTCTTTTTCTCCTGATTTTCGGCCTCAGCTCCTAGAGTGGCCTCAGCTAGGTAACCAACGGGAGTCGACTTATCTA
 801 TGCCAGGCCTGCAGTTTCACATCTGTGACGGGATGGGACAAATGACACCGTGGTATTCGATGACAGCTCCCAGGTACTTC
 881 AAGGTTGGCCCTTACTCATTCAGGGGGTATGTTTGAGTGCCACGGTGTGCCCAGACTCTGCTAGGCACCAGAGAGACAAG
 961 ATACGAGTGACATGGTTCTCCTCCCACTGCTGACGGAGGAATTAACACAAAAGCAGACAACACTCTAGAACTGGAGAGAG
1041 GTCCAGATTGCGACAGGAGCCACACCAGAGTGTGCAGGCTTCATGGAGGACAGAAGCGACTTTTGTGCCGGGACTTAAAA
1121 AGATAAGGAGGCCAGGTGTGGTGGCTCATGCCTGCAATCCCAGCACTGTAGAAGGCAGAGGCCGGCAGATCACTTGAGCC
1201 CAGGAGTTGGAGACCAGACTGGGGAACATGGCAAGACCCCATCTCTACAAAAAAATTAAAAAATTTGGCCTGGTGTGGTG
1281 GCTCATGCCTGTGATCCTAGCACTTTGGGAGTTAAAATACAACACTTCCCAGCTGCCCTTATAGTTAAGGTCTGGCCAGT
1361 GAAATGTATGTGGAAATGTTACATGACACTTCTAGAAGGATTCTTAAAAGACAAATACACCCTTTCTTCCCCCTTCCTAT
1441 TTCCTGGAATGTGGGTGTGATGGCTGGAGCCCTGGCAGCCATACTGCCACGTGTACAGACGAGTGCCGTCCTTTAGGGAT
1521 GACAGGAGCCTGGTTCCCTGATGATGGCAGAGCCAGATATCAGCACAAACTTATTTAAATGGGAGAGAGAAGGGGAGAAC
1601 CAATCTCAACTTCTACCTTGTGTAAGCTGCTGGTTTTGGGGGTTTTCTATGACAGATACCAAAATAAACCCTAACTGAAC
1681 ATGTACTCC
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' acAUGUCGUCCGUGUCUGUCc 5'
            | || || |: :|||||| 
Target 5' gtTTCACCATGT-TAGACAGg 3'
594 - 613 138.00 -13.10
2
miRNA  3' acaUGUCGUCCGUGUCUGUcc 5'
             ||| ||   :||||||  
Target 5' ttaACA-CAAAAGCAGACAac 3'
1002 - 1021 129.00 -9.10
3
miRNA  3' acauGUCG-UCCGU-GUCUGUCc 5'
              | || ||||| |||| || 
Target 5' gactCTGCTAGGCACCAGAGAGa 3'
934 - 956 129.00 -15.40
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN30610870 11 COSMIC
COSN29297731 36 COSMIC
COSN30549210 78 COSMIC
COSN20053309 79 COSMIC
COSN26616401 363 COSMIC
COSN26616400 368 COSMIC
COSN22294830 549 COSMIC
COSN152479 1152 COSMIC
COSN7353734 1501 COSMIC
rs10422949 79 GWAS
rs11557092 841 GWAS
rs10402592 972 GWAS
rs4804146 1683 GWAS
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs945651460 7 dbSNP
rs557924675 8 dbSNP
rs539671057 10 dbSNP
rs183836474 11 dbSNP
rs775465289 12 dbSNP
rs1457336637 14 dbSNP
rs1415730159 18 dbSNP
rs192507355 19 dbSNP
rs745657132 20 dbSNP
rs1481074221 22 dbSNP
rs1255696985 29 dbSNP
rs1232458138 30 dbSNP
rs769587754 33 dbSNP
rs779141076 34 dbSNP
rs771083717 35 dbSNP
rs749342385 37 dbSNP
rs535076471 44 dbSNP
rs568051327 45 dbSNP
rs1401053117 53 dbSNP
rs1351744192 57 dbSNP
rs1228486259 58 dbSNP
rs982126718 62 dbSNP
rs1287572451 63 dbSNP
rs1300719154 77 dbSNP
rs1189601630 78 dbSNP
rs10422949 79 dbSNP
rs781764861 81 dbSNP
rs1157935724 82 dbSNP
rs1437722571 83 dbSNP
rs755309167 85 dbSNP
rs766223528 86 dbSNP
rs755999847 88 dbSNP
rs1419752203 91 dbSNP
rs1484037192 94 dbSNP
rs1182977635 102 dbSNP
rs12973949 103 dbSNP
rs1411399614 103 dbSNP
rs368561342 103 dbSNP
rs71164155 103 dbSNP
rs1372027380 104 dbSNP
rs554669313 127 dbSNP
rs1306861136 129 dbSNP
rs534913988 134 dbSNP
rs1212322191 137 dbSNP
rs1443128487 142 dbSNP
rs186451669 167 dbSNP
rs552386728 181 dbSNP
rs530742439 188 dbSNP
rs1279782689 189 dbSNP
rs1219078760 191 dbSNP
rs1354413926 199 dbSNP
rs1436182478 206 dbSNP
rs1282115846 210 dbSNP
rs1449547048 211 dbSNP
rs1247815934 223 dbSNP
rs1172158820 225 dbSNP
rs559124202 225 dbSNP
rs970588738 228 dbSNP
rs1429975767 231 dbSNP
rs1167621026 232 dbSNP
rs1393646020 233 dbSNP
rs1406628481 233 dbSNP
rs1043956928 234 dbSNP
rs1438691285 235 dbSNP
rs1299516692 240 dbSNP
rs1365708832 242 dbSNP
rs1229359582 243 dbSNP
rs562944940 248 dbSNP
rs1337465140 249 dbSNP
rs1464472521 256 dbSNP
rs914145382 259 dbSNP
rs1026606017 261 dbSNP
rs868129254 264 dbSNP
rs1171827047 265 dbSNP
rs993336843 268 dbSNP
rs899108257 269 dbSNP
rs988130850 273 dbSNP
rs148234817 276 dbSNP
rs537388811 282 dbSNP
rs1192362749 283 dbSNP
rs1016171926 284 dbSNP
rs1475119619 292 dbSNP
rs928088422 302 dbSNP
rs981233785 305 dbSNP
rs1411873073 312 dbSNP
rs1007252274 316 dbSNP
rs1371001513 318 dbSNP
rs888757690 327 dbSNP
rs1032919293 328 dbSNP
rs551101055 331 dbSNP
rs1232316928 332 dbSNP
rs1322500788 335 dbSNP
rs1051520886 336 dbSNP
rs933020188 344 dbSNP
rs1434108521 356 dbSNP
rs150519327 357 dbSNP
rs141618758 360 dbSNP
rs1247332292 363 dbSNP
rs540312943 368 dbSNP
rs1320932165 369 dbSNP
rs1270603559 378 dbSNP
rs1287510963 379 dbSNP
rs1204926396 381 dbSNP
rs1229630786 389 dbSNP
rs961989988 390 dbSNP
rs1187861864 391 dbSNP
rs1014838783 393 dbSNP
rs1278379633 395 dbSNP
rs1444026550 398 dbSNP
rs1379744774 399 dbSNP
rs1332689578 400 dbSNP
rs1461224466 401 dbSNP
rs1348449055 403 dbSNP
rs1473951188 404 dbSNP
rs1167364948 405 dbSNP
rs1161210990 410 dbSNP
rs1406102469 413 dbSNP
rs1407617911 414 dbSNP
rs1008593356 415 dbSNP
rs1286886602 416 dbSNP
rs1456702472 416 dbSNP
rs747127191 416 dbSNP
rs905732676 416 dbSNP
rs1176838791 417 dbSNP
rs1324645723 417 dbSNP
rs1290687524 418 dbSNP
rs1441674308 420 dbSNP
rs1239898429 421 dbSNP
rs1179138195 423 dbSNP
rs1484459162 423 dbSNP
rs1200627360 425 dbSNP
rs8111226 429 dbSNP
rs1251980304 432 dbSNP
rs1418409639 435 dbSNP
rs534671777 436 dbSNP
rs566180884 437 dbSNP
rs1223505669 438 dbSNP
rs1413245307 439 dbSNP
rs1321944704 441 dbSNP
rs1391278261 443 dbSNP
rs996288534 444 dbSNP
rs1314248571 447 dbSNP
rs1237300772 449 dbSNP
rs181472578 450 dbSNP
rs377581589 451 dbSNP
rs1280149620 453 dbSNP
rs1345277209 453 dbSNP
rs1386646311 454 dbSNP
rs1043904606 455 dbSNP
rs1366117555 457 dbSNP
rs1480044476 457 dbSNP
rs532339490 458 dbSNP
rs914178760 460 dbSNP
rs777256316 461 dbSNP
rs1157122665 462 dbSNP
rs545951983 467 dbSNP
rs1461555734 470 dbSNP
rs1380946798 475 dbSNP
rs1296884674 479 dbSNP
rs1173109560 483 dbSNP
rs1432463713 484 dbSNP
rs1369294435 485 dbSNP
rs569789038 489 dbSNP
rs1274940070 493 dbSNP
rs549942779 493 dbSNP
rs1192695357 494 dbSNP
rs1266771687 499 dbSNP
rs1488713515 501 dbSNP
rs980883399 502 dbSNP
rs112722887 503 dbSNP
rs1190690925 505 dbSNP
rs920670171 506 dbSNP
rs1428208755 510 dbSNP
rs973262837 511 dbSNP
rs1351737793 512 dbSNP
rs1462398056 524 dbSNP
rs556591415 525 dbSNP
rs1213959601 526 dbSNP
rs902923076 529 dbSNP
rs769777001 538 dbSNP
rs1286021366 540 dbSNP
rs1231975385 541 dbSNP
rs535545487 546 dbSNP
rs915496113 548 dbSNP
rs141593507 549 dbSNP
rs1340246857 550 dbSNP
rs1271206485 552 dbSNP
rs938020577 557 dbSNP
rs1402019956 558 dbSNP
rs926586633 559 dbSNP
rs9749350 560 dbSNP
rs1415991343 561 dbSNP
rs534357021 562 dbSNP
rs1164750577 570 dbSNP
rs971253760 572 dbSNP
rs1319381904 574 dbSNP
rs919337045 574 dbSNP
rs1345008438 575 dbSNP
rs1011047386 580 dbSNP
rs892605042 582 dbSNP
rs1491353220 583 dbSNP
rs570726566 583 dbSNP
rs1290970132 588 dbSNP
rs867297079 590 dbSNP
rs552522933 591 dbSNP
rs1016204961 592 dbSNP
rs906783234 593 dbSNP
rs1045506827 594 dbSNP
rs1478595265 595 dbSNP
rs1187291995 599 dbSNP
rs1263526988 600 dbSNP
rs1199363316 601 dbSNP
rs74180170 602 dbSNP
rs569878721 606 dbSNP
rs565003342 607 dbSNP
rs548128670 608 dbSNP
rs190700602 609 dbSNP
rs1338874520 610 dbSNP
rs371550191 613 dbSNP
rs1160827336 614 dbSNP
rs779055615 614 dbSNP
rs149442147 615 dbSNP
rs1469108239 616 dbSNP
rs997176788 616 dbSNP
rs185595240 617 dbSNP
rs1312339407 618 dbSNP
rs564410564 619 dbSNP
rs1328030017 620 dbSNP
rs1394334403 621 dbSNP
rs2116896 622 dbSNP
rs1303523864 624 dbSNP
rs530968875 632 dbSNP
rs563531593 633 dbSNP
rs542085797 635 dbSNP
rs1467034830 640 dbSNP
rs1436549690 641 dbSNP
rs555973051 642 dbSNP
rs1186346579 643 dbSNP
rs181533741 646 dbSNP
rs540994781 647 dbSNP
rs1031168919 648 dbSNP
rs12460253 651 dbSNP
rs558852628 652 dbSNP
rs1393741684 660 dbSNP
rs1200887615 661 dbSNP
rs1326518555 663 dbSNP
rs1393377277 668 dbSNP
rs1045303707 669 dbSNP
rs1319088168 670 dbSNP
rs372355021 671 dbSNP
rs1269651904 672 dbSNP
rs1037799539 673 dbSNP
rs1235638010 674 dbSNP
rs1274358364 675 dbSNP
rs140943693 679 dbSNP
rs1313525031 680 dbSNP
rs1446206325 682 dbSNP
rs554813600 685 dbSNP
rs1447181512 686 dbSNP
rs1329271446 689 dbSNP
rs79668907 690 dbSNP
rs536089892 691 dbSNP
rs568504984 692 dbSNP
rs987737425 695 dbSNP
rs1385465269 697 dbSNP
rs933148625 698 dbSNP
rs565893281 699 dbSNP
rs1294044871 700 dbSNP
rs1283117437 704 dbSNP
rs144444958 704 dbSNP
rs921862096 709 dbSNP
rs1265422171 716 dbSNP
rs1204142160 717 dbSNP
rs1491158699 717 dbSNP
rs113366434 718 dbSNP
rs1161232951 718 dbSNP
rs1188045351 718 dbSNP
rs1259253351 718 dbSNP
rs1486483812 718 dbSNP
rs1491553294 718 dbSNP
rs374952198 718 dbSNP
rs750052220 718 dbSNP
rs1255657612 719 dbSNP
rs370246183 719 dbSNP
rs1323877905 723 dbSNP
rs1459917697 727 dbSNP
rs1179389740 735 dbSNP
rs1300152476 739 dbSNP
rs558900506 744 dbSNP
rs1374887276 745 dbSNP
rs868474776 755 dbSNP
rs1374884378 758 dbSNP
rs147062477 762 dbSNP
rs968361702 764 dbSNP
rs1391367091 768 dbSNP
rs528422290 770 dbSNP
rs570520703 775 dbSNP
rs1234521817 778 dbSNP
rs1407595745 783 dbSNP
rs1338508368 784 dbSNP
rs1010160989 790 dbSNP
rs893941516 791 dbSNP
rs1174223074 793 dbSNP
rs10423630 797 dbSNP
rs1454571219 797 dbSNP
rs772079216 808 dbSNP
rs938305613 813 dbSNP
rs926869849 814 dbSNP
rs1172588424 826 dbSNP
rs78655751 829 dbSNP
rs949396252 830 dbSNP
rs1397058026 834 dbSNP
rs1216408028 835 dbSNP
rs1349149691 836 dbSNP
rs1442116904 840 dbSNP
rs11557092 841 dbSNP
rs1368329779 848 dbSNP
rs753537517 849 dbSNP
rs141640349 850 dbSNP
rs760244945 851 dbSNP
rs1339381243 855 dbSNP
rs1295646133 858 dbSNP
rs868439986 859 dbSNP
rs1037737494 860 dbSNP
rs1004871864 861 dbSNP
rs1416280214 862 dbSNP
rs1355749733 863 dbSNP
rs1250956497 866 dbSNP
rs1297341693 867 dbSNP
rs1487616527 869 dbSNP
rs1254564869 874 dbSNP
rs2163839 877 dbSNP
rs1386965800 881 dbSNP
rs537124830 882 dbSNP
rs1159084159 893 dbSNP
rs1307127595 903 dbSNP
rs1030232975 907 dbSNP
rs933162807 909 dbSNP
rs780620655 918 dbSNP
rs559351800 920 dbSNP
rs1317066844 923 dbSNP
rs1453196112 924 dbSNP
rs1432393241 927 dbSNP
rs967040385 929 dbSNP
rs1360578869 956 dbSNP
rs1454328409 964 dbSNP
rs1020460654 965 dbSNP
rs1185947048 969 dbSNP
rs147834286 971 dbSNP
rs10402592 972 dbSNP
rs1318540121 973 dbSNP
rs1053914413 974 dbSNP
rs558581475 979 dbSNP
rs149774359 985 dbSNP
rs1242928774 987 dbSNP
rs1485699136 988 dbSNP
rs543473443 994 dbSNP
rs189132940 995 dbSNP
rs1046621536 999 dbSNP
rs949429131 1009 dbSNP
rs919233156 1021 dbSNP
rs144394182 1023 dbSNP
rs1187894915 1028 dbSNP
rs184666925 1031 dbSNP
rs1358237914 1032 dbSNP
rs1402807914 1043 dbSNP
rs180865902 1051 dbSNP
rs909289860 1052 dbSNP
rs1402077471 1056 dbSNP
rs1314158461 1059 dbSNP
rs1355572335 1063 dbSNP
rs189162297 1066 dbSNP
rs1282361027 1067 dbSNP
rs931777970 1069 dbSNP
rs1012411936 1070 dbSNP
rs1283381291 1078 dbSNP
rs1171291856 1079 dbSNP
rs963651810 1084 dbSNP
rs1058346 1086 dbSNP
rs1016504785 1096 dbSNP
rs534784506 1097 dbSNP
rs975989723 1098 dbSNP
rs886412880 1109 dbSNP
rs967450325 1110 dbSNP
rs1471473451 1115 dbSNP
rs1178134222 1123 dbSNP
rs1019986725 1131 dbSNP
rs1407782677 1133 dbSNP
rs1052288668 1138 dbSNP
rs751449336 1143 dbSNP
rs1437386785 1145 dbSNP
rs1430346770 1147 dbSNP
rs1193398166 1148 dbSNP
rs777684941 1157 dbSNP
rs139936459 1159 dbSNP
rs1331695662 1163 dbSNP
rs1356206492 1169 dbSNP
rs751961575 1183 dbSNP
rs184755907 1184 dbSNP
rs1374413434 1190 dbSNP
rs1276632957 1192 dbSNP
rs1238192740 1196 dbSNP
rs148698671 1206 dbSNP
rs866336534 1214 dbSNP
rs1347058947 1218 dbSNP
rs1199923645 1250 dbSNP
rs1283614003 1256 dbSNP
rs1276668985 1257 dbSNP
rs905341976 1258 dbSNP
rs1205863498 1260 dbSNP
rs1232627873 1264 dbSNP
rs1337928708 1265 dbSNP
rs1456723013 1268 dbSNP
rs752470060 1273 dbSNP
rs1013799413 1284 dbSNP
rs898071625 1286 dbSNP
rs1339321467 1288 dbSNP
rs1036400480 1290 dbSNP
rs1170264832 1299 dbSNP
rs941989356 1301 dbSNP
rs887878048 1307 dbSNP
rs1410413498 1310 dbSNP
rs1050470066 1311 dbSNP
rs931809146 1313 dbSNP
rs923089287 1314 dbSNP
rs928289432 1318 dbSNP
rs981603151 1319 dbSNP
rs773923321 1325 dbSNP
rs564776502 1330 dbSNP
rs760915021 1335 dbSNP
rs1215604805 1336 dbSNP
rs145118287 1350 dbSNP
rs983669502 1358 dbSNP
rs1426014657 1370 dbSNP
rs1187291292 1376 dbSNP
rs750628840 1378 dbSNP
rs1450665680 1380 dbSNP
rs533459614 1382 dbSNP
rs957012489 1383 dbSNP
rs530271805 1384 dbSNP
rs1235752495 1388 dbSNP
rs1243303286 1392 dbSNP
rs1475458819 1395 dbSNP
rs1167196453 1396 dbSNP
rs1189716092 1398 dbSNP
rs1421370923 1410 dbSNP
rs1034077036 1412 dbSNP
rs1030371115 1414 dbSNP
rs1165336361 1417 dbSNP
rs997917156 1418 dbSNP
rs1386390829 1421 dbSNP
rs900614426 1431 dbSNP
rs1328221097 1432 dbSNP
rs979788945 1433 dbSNP
rs1462595425 1436 dbSNP
rs1277720080 1452 dbSNP
rs969533244 1454 dbSNP
rs892942526 1457 dbSNP
rs1052976633 1458 dbSNP
rs1197742710 1459 dbSNP
rs1207630221 1468 dbSNP
rs1285928568 1478 dbSNP
rs1447274368 1481 dbSNP
rs1192291163 1483 dbSNP
rs1025182241 1488 dbSNP
rs934558921 1490 dbSNP
rs868652014 1491 dbSNP
rs748119336 1500 dbSNP
rs1015566219 1501 dbSNP
rs1214735441 1506 dbSNP
rs559679528 1507 dbSNP
rs191960202 1508 dbSNP
rs532226091 1517 dbSNP
rs887742939 1519 dbSNP
rs563175826 1524 dbSNP
rs1387410697 1529 dbSNP
rs1401544360 1530 dbSNP
rs907113408 1534 dbSNP
rs1338551352 1539 dbSNP
rs565010459 1542 dbSNP
rs1449655487 1545 dbSNP
rs1384156589 1546 dbSNP
rs1294448189 1554 dbSNP
rs764683268 1560 dbSNP
rs1243053605 1567 dbSNP
rs1281702993 1573 dbSNP
rs4804147 1574 dbSNP
rs901916433 1582 dbSNP
rs973787342 1592 dbSNP
rs562569918 1595 dbSNP
rs1486370725 1602 dbSNP
rs117973872 1609 dbSNP
rs1422059150 1623 dbSNP
rs1183683821 1627 dbSNP
rs945851756 1637 dbSNP
rs187464374 1641 dbSNP
rs775965647 1644 dbSNP
rs542568782 1657 dbSNP
rs10401268 1661 dbSNP
rs1054272458 1668 dbSNP
rs568260252 1669 dbSNP
rs1313622391 1671 dbSNP
rs926923772 1676 dbSNP
rs1394839581 1680 dbSNP
rs909340463 1682 dbSNP
rs4804146 1683 dbSNP
rs1238893813 1685 dbSNP
rs576892687 1686 dbSNP
rs916975556 1688 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HEK293S
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in GSM1084078. RNA binding protein: AGO2. Condition:CLIP_nohippuristanol_rep2_AbnovaAb ...

- Karginov FV; Hannon GJ, 2013, Genes & development.

Article - Karginov FV; Hannon GJ
- Genes & development, 2013
When adapting to environmental stress, cells attenuate and reprogram their translational output. In part, these altered translation profiles are established through changes in the interactions between RNA-binding proteins and mRNAs. The Argonaute 2 (Ago2)/microRNA (miRNA) machinery has been shown to participate in stress-induced translational up-regulation of a particular mRNA, CAT-1; however, a detailed, transcriptome-wide understanding of the involvement of Ago2 in the process has been lacking. Here, we profiled the overall changes in Ago2-mRNA interactions upon arsenite stress by cross-linking immunoprecipitation (CLIP) followed by high-throughput sequencing (CLIP-seq). Ago2 displayed a significant remodeling of its transcript occupancy, with the majority of 3' untranslated region (UTR) and coding sequence (CDS) sites exhibiting stronger interaction. Interestingly, target sites that were destined for release from Ago2 upon stress were depleted in miRNA complementarity signatures, suggesting an alternative mode of interaction. To compare the changes in Ago2-binding patterns across transcripts with changes in their translational states, we measured mRNA profiles on ribosome/polysome gradients by RNA sequencing (RNA-seq). Increased Ago2 occupancy correlated with stronger repression of translation for those mRNAs, as evidenced by a shift toward lighter gradient fractions upon stress, while release of Ago2 was associated with the limited number of transcripts that remained translated. Taken together, these data point to a role for Ago2 and the mammalian miRNAs in mediating the translational component of the stress response.
LinkOut: [PMID: 23824327]
CLIP-seq Support 1 for dataset GSM1084078
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_nohippuristanol_rep2_AbnovaAb
Location of target site ENST00000592540.1 | 3UTR | AGAUCUUUUUUUUUUUUUUUUUGAGAC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
134 hsa-miR-3120-5p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT096972 BDP1 B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB 2 2
MIRT442624 LOX lysyl oxidase 2 2
MIRT473438 MDM4 MDM4, p53 regulator 2 2
MIRT490011 KIFC2 kinesin family member C2 2 2
MIRT496449 N6AMT1 N-6 adenine-specific DNA methyltransferase 1 2 2
MIRT496752 TGIF2 TGFB induced factor homeobox 2 2 2
MIRT497721 CYP1A1 cytochrome P450 family 1 subfamily A member 1 2 2
MIRT498287 PADI3 peptidyl arginine deiminase 3 2 2
MIRT503195 ACVR1B activin A receptor type 1B 2 4
MIRT504760 TEP1 telomerase associated protein 1 2 4
MIRT517810 UGDH UDP-glucose 6-dehydrogenase 2 6
MIRT519686 ZNF622 zinc finger protein 622 2 4
MIRT520263 URGCP upregulator of cell proliferation 2 2
MIRT523051 ICMT isoprenylcysteine carboxyl methyltransferase 2 2
MIRT525601 OLR1 oxidized low density lipoprotein receptor 1 2 4
MIRT526995 ARL8B ADP ribosylation factor like GTPase 8B 2 2
MIRT528699 TRAF3IP2 TRAF3 interacting protein 2 2 4
MIRT533142 WNT10A Wnt family member 10A 2 2
MIRT537618 ERI1 exoribonuclease 1 2 2
MIRT539707 EIF3H eukaryotic translation initiation factor 3 subunit H 2 2
MIRT539752 CNBP CCHC-type zinc finger nucleic acid binding protein 2 2
MIRT539808 GAPVD1 GTPase activating protein and VPS9 domains 1 2 2
MIRT539941 IFNAR2 interferon alpha and beta receptor subunit 2 2 2
MIRT540424 FAM83F family with sequence similarity 83 member F 2 2
MIRT540509 CXCL10 C-X-C motif chemokine ligand 10 2 2
MIRT540720 GUF1 GUF1 homolog, GTPase 2 2
MIRT541630 PARP2 poly(ADP-ribose) polymerase 2 2 2
MIRT542286 POLR3K RNA polymerase III subunit K 2 2
MIRT542456 AKR7A2 aldo-keto reductase family 7 member A2 2 2
MIRT542550 MRPS10 mitochondrial ribosomal protein S10 2 2
MIRT542771 PPAP2B phospholipid phosphatase 3 2 2
MIRT550085 TRAPPC2 trafficking protein particle complex 2 2 2
MIRT551458 CARKD NAD(P)HX dehydratase 2 2
MIRT555622 PHLPP2 PH domain and leucine rich repeat protein phosphatase 2 2 2
MIRT569136 KATNAL1 katanin catalytic subunit A1 like 1 2 2
MIRT572328 HSPB6 heat shock protein family B (small) member 6 2 2
MIRT574607 LZIC leucine zipper and CTNNBIP1 domain containing 2 2
MIRT575583 Mcm8 minichromosome maintenance 8 homologous recombination repair factor 2 4
MIRT576125 Hrk harakiri, BCL2 interacting protein (contains only BH3 domain) 2 5
MIRT576657 Fam216a family with sequence similarity 216, member A 2 2
MIRT607222 ACSM2A acyl-CoA synthetase medium chain family member 2A 2 4
MIRT607292 CD300E CD300e molecule 2 6
MIRT607746 ANGPT4 angiopoietin 4 2 2
MIRT607905 SPRYD4 SPRY domain containing 4 2 2
MIRT608159 HRK harakiri, BCL2 interacting protein 2 7
MIRT608657 ABCF3 ATP binding cassette subfamily F member 3 2 4
MIRT609115 ZNF703 zinc finger protein 703 2 6
MIRT610231 ACOT9 acyl-CoA thioesterase 9 2 2
MIRT610870 NUDCD3 NudC domain containing 3 2 2
MIRT611217 MC2R melanocortin 2 receptor 2 2
MIRT614858 PLEKHA6 pleckstrin homology domain containing A6 2 2
MIRT616966 LMX1A LIM homeobox transcription factor 1 alpha 2 2
MIRT617258 GLIPR1L2 GLI pathogenesis related 1 like 2 2 2
MIRT618009 SLC9A3R2 SLC9A3 regulator 2 2 2
MIRT619067 BSND barttin CLCNK type accessory beta subunit 2 4
MIRT619295 FAM26E calcium homeostasis modulator family member 5 2 2
MIRT619348 GINM1 glycoprotein integral membrane 1 2 2
MIRT619362 CFHR5 complement factor H related 5 2 2
MIRT619541 PIWIL2 piwi like RNA-mediated gene silencing 2 2 2
MIRT619782 NRIP2 nuclear receptor interacting protein 2 2 2
MIRT619994 NPAP1 nuclear pore associated protein 1 2 2
MIRT621030 CDC14B cell division cycle 14B 2 2
MIRT622033 STAT5A signal transducer and activator of transcription 5A 2 2
MIRT622728 PITPNM3 PITPNM family member 3 2 2
MIRT623144 NAV2 neuron navigator 2 2 2
MIRT623600 IPO9 importin 9 2 2
MIRT624608 B3GALT5 beta-1,3-galactosyltransferase 5 2 2
MIRT624905 CTCFL CCCTC-binding factor like 2 2
MIRT625030 SPC24 SPC24, NDC80 kinetochore complex component 2 2
MIRT625688 MCM8 minichromosome maintenance 8 homologous recombination repair factor 2 5
MIRT626531 EMCN endomucin 2 2
MIRT627204 ZDHHC20 zinc finger DHHC-type containing 20 2 2
MIRT628033 LSAMP limbic system-associated membrane protein 2 2
MIRT628203 FREM2 FRAS1 related extracellular matrix protein 2 2 2
MIRT631012 LINS lines homolog 1 2 2
MIRT633195 HSPE1-MOB4 HSPE1-MOB4 readthrough 2 2
MIRT633890 CACNG8 calcium voltage-gated channel auxiliary subunit gamma 8 2 2
MIRT634023 MOB4 MOB family member 4, phocein 2 2
MIRT634416 PLCXD3 phosphatidylinositol specific phospholipase C X domain containing 3 2 2
MIRT636866 ARSE arylsulfatase E (chondrodysplasia punctata 1) 2 2
MIRT642527 ANKRD9 ankyrin repeat domain 9 2 2
MIRT645408 FAM110A family with sequence similarity 110 member A 2 2
MIRT645635 SYTL4 synaptotagmin like 4 2 2
MIRT646013 TNFAIP8L2 TNF alpha induced protein 8 like 2 2 2
MIRT646686 ASGR2 asialoglycoprotein receptor 2 2 2
MIRT652838 TACO1 translational activator of cytochrome c oxidase I 2 2
MIRT655156 PHF21B PHD finger protein 21B 2 2
MIRT658491 EXOC7 exocyst complex component 7 2 2
MIRT659398 CORO2A coronin 2A 2 2
MIRT666825 PRCP prolylcarboxypeptidase 2 2
MIRT666866 POU2F2 POU class 2 homeobox 2 2 2
MIRT668224 GABRA1 gamma-aminobutyric acid type A receptor alpha1 subunit 2 2
MIRT673288 PDE3A phosphodiesterase 3A 2 2
MIRT673878 KLF2 Kruppel like factor 2 2 2
MIRT681721 KCNE4 potassium voltage-gated channel subfamily E regulatory subunit 4 2 2
MIRT682406 PARD6B par-6 family cell polarity regulator beta 2 2
MIRT684109 MCM10 minichromosome maintenance 10 replication initiation factor 2 2
MIRT684423 TUFT1 tuftelin 1 2 2
MIRT684684 OR7D2 olfactory receptor family 7 subfamily D member 2 2 2
MIRT686638 TMEM184C transmembrane protein 184C 2 2
MIRT689457 NXN nucleoredoxin 2 2
MIRT689627 NAA30 N(alpha)-acetyltransferase 30, NatC catalytic subunit 2 2
MIRT690773 PLA2G2C phospholipase A2 group IIC 2 2
MIRT690822 SGSM2 small G protein signaling modulator 2 2 2
MIRT693669 MXRA7 matrix remodeling associated 7 2 2
MIRT695553 CLPB ClpB homolog, mitochondrial AAA ATPase chaperonin 2 2
MIRT695872 C19orf52 translocase of inner mitochondrial membrane 29 2 2
MIRT698160 TNFRSF13C TNF receptor superfamily member 13C 2 2
MIRT699933 RUFY2 RUN and FYVE domain containing 2 2 2
MIRT708639 UBE2W ubiquitin conjugating enzyme E2 W 2 2
MIRT710816 RAB11FIP4 RAB11 family interacting protein 4 2 2
MIRT711242 TRAT1 T-cell receptor associated transmembrane adaptor 1 2 2
MIRT711542 MSH3 mutS homolog 3 2 2
MIRT711749 DTX1 deltex E3 ubiquitin ligase 1 2 2
MIRT712303 PGM2L1 phosphoglucomutase 2 like 1 2 2
MIRT712922 RPF2 ribosome production factor 2 homolog 2 2
MIRT714027 SYDE2 synapse defective Rho GTPase homolog 2 2 2
MIRT714768 TERF1 telomeric repeat binding factor 1 2 2
MIRT714844 ADAMTS17 ADAM metallopeptidase with thrombospondin type 1 motif 17 2 2
MIRT715223 NPVF neuropeptide VF precursor 2 2
MIRT716110 GMPS guanine monophosphate synthase 2 2
MIRT716174 FAM71F2 family with sequence similarity 71 member F2 2 2
MIRT716383 C6orf223 chromosome 6 open reading frame 223 2 2
MIRT716527 KSR2 kinase suppressor of ras 2 2 2
MIRT716962 P2RY6 pyrimidinergic receptor P2Y6 2 2
MIRT717605 DSTYK dual serine/threonine and tyrosine protein kinase 2 2
MIRT717696 PTGS1 prostaglandin-endoperoxide synthase 1 2 2
MIRT721360 ENTHD1 ENTH domain containing 1 2 2
MIRT721381 MACC1 MACC1, MET transcriptional regulator 2 2
MIRT721935 RASSF2 Ras association domain family member 2 2 2
MIRT722094 SUSD1 sushi domain containing 1 2 2
MIRT722837 C17orf102 chromosome 17 open reading frame 102 2 2
MIRT722990 TOR1A torsin family 1 member A 2 2
MIRT724174 ABCF2 ATP binding cassette subfamily F member 2 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-3120-5p Cisplatin 5460033 NSC119875 approved sensitive cell line
hsa-miR-3120-5p Prednisone/Azathioprine/Methotrexate/Cyclophosphamide/Mycophenolate mofetil sensitive tissue (myasthenia gravis)
hsa-miR-3120-5p Gemcitabine 60750 NSC613327 approved resistant cell line (PANC-1) (1500 ng/ml)

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