pre-miRNA Information
pre-miRNA hsa-mir-4742   
Genomic Coordinates chr1: 224398227 - 224398311
Description Homo sapiens miR-4742 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-4742-5p
Sequence 1| UCAGGCAAAGGGAUAUUUACAGA |23
Evidence Experimental
Experiments Illumina
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1234293681 4 dbSNP
rs778464201 9 dbSNP
rs758952505 12 dbSNP
rs753463665 16 dbSNP
rs765920862 18 dbSNP
rs1205603801 20 dbSNP
rs756994761 21 dbSNP
Putative Targets

Gene Information
Gene Symbol C15orf41   
Synonyms HH114
Description chromosome 15 open reading frame 41
Transcript NM_032499   
Other Transcripts NM_001130010   
Expression
Putative miRNA Targets on C15orf41
3'UTR of C15orf41
(miRNA target sites are highlighted)
>C15orf41|NM_032499|3'UTR
   1 CCCTGAAGATCCTGGAAGAGAAGCTGGGAGGAAAAGGTGAATCCGGAAGCAATTTTACTTTCCTGCACTGTAAGATCCTG
  81 GCAACATCTGCCCTGAACTTCAGCTGAACTCTTGCTGCCCGTAGTCACACCACTACCTCTTTAGACAAACATATCAAGAG
 161 TTTCTGTTTTCCTTCATCCCTTGCTGATGTGAACAGCCAAGAACTACAGACACAACCCACTCATTATCAGCATTTCTGTC
 241 TCTGTCAAACAATTAGTTTATAGATAGTCATAATCTTTCTTTCTTCCGGATGGTTTATCCTTGTATGCTGAACAAAAGAA
 321 AAAATGTGAAGACTGAAAGGTGTGATTTTTCAATTCTCCTCCCAGTTACCGAATCACCCTCTTATTTTTTTTTCCCTAAG
 401 CCTCCGTTCACTGTCTCTCCCTCTCCCTTTCTCTTCATGTGCACTCACAGAGACCCAGCATTGCATTACCATCGTGGAAT
 481 AATCTAGCGCAAACCTAGGAAAGCTGAAGCCACAAAGTCCAAAGCCACCTTTGTACTCACCTGCAGAGCTCCAGAAGACC
 561 TTGATGGCAGCCTGCCTATGCTGTGTGTTTGCTATATTCAATCTTTACGGCTTCCTGACTTCTGTGACAGTAAGCCAAGT
 641 GCAAAAATACACTTGATGAGAATTTCCTCTTTTAATAATGTTATTTGAACACCACATATTTTAGATTTATCTTATTTGAA
 721 AGTATTAGTTCCATTGTGCCTGGAAACCACACTCCTTTAGATTGGGGGCCGAGAGGCGACAACCCAACATTGAGGAGAGT
 801 TTATTTTTAAACATGGCTAGTTGTCAGTATGTACGTGAGCTAGTATTTTTATGAGTCGAGTTTTTTAAAGGCACATTCTG
 881 TATACTGCTTAGTATATGCATTTTATACCATGTAATTATAAAACACTCGAGTAAGTTCAGCATTAGAAATGTTTAGCTTT
 961 GTATGAACTGAGTGTGCCAGAAATAAACCTGGAGCAATTTTTAAATAAGCAAAATAAAGGAGATTTTTCTATTTGTTCAC
1041 TTTAATTTATTCACTTTTGTGTACTTTTATGTACTGCAAATCAGATTTCAGTCTAAAGCGAAACATCAGTAAGTTAATAA
1121 TAAACCTATCTTTTGGGAAGTTGAATATTAATCTGTACCCAAAACGTATTTAGTAAAATATTTGCCCCCGCCACCCTGCC
1201 ATGCTGACATAACAACTTTTATAATGTTGAATAGATGATATGGGAAATACTAATAACAACAATGTAATTTTTGCAGACAG
1281 CTTTAACTTATATACATTGCTTGATTTTTTTCAAAAGACTAAATATGTCATTTATACTTTGTTTATTTTCTACCAAAGAA
1361 GGTTTGTAAAAATATGCCTGCTGCTTTTCCTTTTGAAGGACACAAACCTGGTCCCAACATGTGTGGATTTTAACTCTGAG
1441 TGGGGTGCATTAAATCAAAAGAGAGAGGCAGAAGATGAAATGCTAAAGAAGGGTCAGGCAAACTTCTGTTTCAGTATAAA
1521 ATTCATCATGCAGGCTTCTGAGTGAAATAGAATGATTTGAAACCACTACTGTATTGCCTGGATACACACACACACACACA
1601 CACACACTTTATACAAAAATGTTAAAAGCAGGTTTCCTGGCATGTTCTAAACTGTTTTTTCTTTAGGAATAAATTACATT
1681 TATCTGCACAGATGTTGAAAATCCTGTTAAACCCTTGTCAAGGATTTGTTTATTTTACATTAAACAAATTTATTATGATG
1761 AACGTGAACAAATAAATTAAAAAATAAAAAAGGTACTTGCGTTTTGT
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' agACAUUUAUAGGGA---AACGGACu 5'
            || ||  | : ||   ||||||| 
Target 5' ttTGAAACCACTACTGTATTGCCTGg 3'
1556 - 1581 149.00 -13.80
2
miRNA  3' agACAUU---UAUAGGGAAACGGACu 5'
            | |||   ||||  | ||||:|| 
Target 5' gcTTTAACTTATAT-ACATTGCTTGa 3'
1280 - 1304 140.00 -9.30
3
miRNA  3' agACAUUUAU-----AGGGAA-ACGGACu 5'
            || ||:||     ||| || |||||| 
Target 5' ttTGAAAGTATTAGTTCCATTGTGCCTGg 3'
715 - 743 137.00 -15.50
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN30511521 40 COSMIC
COSN30690135 64 COSMIC
COSN31494846 79 COSMIC
COSN25104665 122 COSMIC
COSN30170958 122 COSMIC
COSN30163880 152 COSMIC
COSN30169924 188 COSMIC
COSN28257216 200 COSMIC
COSN31553459 298 COSMIC
COSN28742522 352 COSMIC
COSN30650909 475 COSMIC
COSN20051774 595 COSMIC
COSN17263500 760 COSMIC
COSN6271795 794 COSMIC
COSN22578473 908 COSMIC
COSN19186418 950 COSMIC
COSN16377545 978 COSMIC
COSN1176162 1545 COSMIC
COSN20111915 1607 COSMIC
COSN9624242 1718 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1209748204 5 dbSNP
rs760041272 9 dbSNP
rs768388658 15 dbSNP
rs776192650 17 dbSNP
rs1418899266 21 dbSNP
rs1406496036 23 dbSNP
rs1380955666 24 dbSNP
rs774602335 25 dbSNP
rs761563025 27 dbSNP
rs146822631 29 dbSNP
rs1159668311 37 dbSNP
rs1382529691 38 dbSNP
rs1433189773 44 dbSNP
rs572279724 45 dbSNP
rs762891996 46 dbSNP
rs1187003655 47 dbSNP
rs1450370353 57 dbSNP
rs766361656 59 dbSNP
rs751324392 63 dbSNP
rs993048161 67 dbSNP
rs545810889 69 dbSNP
rs1311715234 70 dbSNP
rs1345507792 71 dbSNP
rs767728530 74 dbSNP
rs1278906512 75 dbSNP
rs918879702 99 dbSNP
rs888175390 107 dbSNP
rs1207252598 113 dbSNP
rs950362736 120 dbSNP
rs774728959 121 dbSNP
rs1441557615 122 dbSNP
rs750363404 129 dbSNP
rs1005348486 131 dbSNP
rs189870458 143 dbSNP
rs1473049467 146 dbSNP
rs974914616 157 dbSNP
rs1320121139 158 dbSNP
rs1382562200 166 dbSNP
rs531560465 167 dbSNP
rs1389987343 174 dbSNP
rs1162666069 187 dbSNP
rs1459974897 189 dbSNP
rs182189074 212 dbSNP
rs897117027 227 dbSNP
rs1165946052 234 dbSNP
rs755950554 242 dbSNP
rs998050746 243 dbSNP
rs543380200 247 dbSNP
rs1240559190 253 dbSNP
rs1167920332 258 dbSNP
rs1195839968 266 dbSNP
rs1030358253 267 dbSNP
rs1267303313 269 dbSNP
rs921746661 286 dbSNP
rs1212310518 288 dbSNP
rs1389585093 289 dbSNP
rs954852764 291 dbSNP
rs1217477095 305 dbSNP
rs933156421 307 dbSNP
rs1271549391 310 dbSNP
rs1227937569 314 dbSNP
rs1330261977 316 dbSNP
rs562983796 316 dbSNP
rs1427873459 331 dbSNP
rs1170604176 339 dbSNP
rs1051624100 340 dbSNP
rs1018117843 342 dbSNP
rs140644576 354 dbSNP
rs1417680165 357 dbSNP
rs946038357 371 dbSNP
rs145803094 372 dbSNP
rs1342640099 376 dbSNP
rs1449343922 378 dbSNP
rs1297540574 379 dbSNP
rs904542296 380 dbSNP
rs367893371 382 dbSNP
rs545939654 382 dbSNP
rs1435536277 385 dbSNP
rs78928536 388 dbSNP
rs1195974062 397 dbSNP
rs1344054317 400 dbSNP
rs752892053 402 dbSNP
rs1001588254 406 dbSNP
rs186462708 407 dbSNP
rs1457746576 415 dbSNP
rs1179834611 418 dbSNP
rs756148906 420 dbSNP
rs1452963110 422 dbSNP
rs1172349462 427 dbSNP
rs948404388 429 dbSNP
rs1426226083 430 dbSNP
rs1416353514 438 dbSNP
rs1168489381 439 dbSNP
rs753359042 449 dbSNP
rs766873092 451 dbSNP
rs1014471904 461 dbSNP
rs1025881865 470 dbSNP
rs563281735 472 dbSNP
rs941111716 474 dbSNP
rs777726070 475 dbSNP
rs1275213754 479 dbSNP
rs1369332884 480 dbSNP
rs1212414380 481 dbSNP
rs1256972655 483 dbSNP
rs1177097590 485 dbSNP
rs114440259 489 dbSNP
rs778687093 490 dbSNP
rs1051471805 491 dbSNP
rs1465038196 502 dbSNP
rs1015906039 505 dbSNP
rs963376544 510 dbSNP
rs889680928 512 dbSNP
rs1198650188 517 dbSNP
rs1247636528 533 dbSNP
rs1348273665 544 dbSNP
rs1285247031 563 dbSNP
rs1221943927 572 dbSNP
rs1371280120 573 dbSNP
rs1281413187 575 dbSNP
rs747845750 577 dbSNP
rs1007979411 578 dbSNP
rs1311258296 585 dbSNP
rs552614916 586 dbSNP
rs757626463 588 dbSNP
rs1376395690 594 dbSNP
rs904642666 595 dbSNP
rs1399399029 598 dbSNP
rs933152192 599 dbSNP
rs987295591 609 dbSNP
rs781351908 610 dbSNP
rs1254992820 617 dbSNP
rs1319534238 618 dbSNP
rs1404741344 620 dbSNP
rs1470489946 621 dbSNP
rs1320383071 623 dbSNP
rs1387076576 625 dbSNP
rs992984173 630 dbSNP
rs1213377701 645 dbSNP
rs1318720022 651 dbSNP
rs1284840640 656 dbSNP
rs1224445454 670 dbSNP
rs1334202740 676 dbSNP
rs1291692195 679 dbSNP
rs1416795900 692 dbSNP
rs1356513141 693 dbSNP
rs1024987256 694 dbSNP
rs945945277 697 dbSNP
rs1043369462 703 dbSNP
rs746244538 707 dbSNP
rs1297613102 708 dbSNP
rs770155846 713 dbSNP
rs1160410741 719 dbSNP
rs530789626 724 dbSNP
rs570663767 727 dbSNP
rs1414942330 729 dbSNP
rs895914913 730 dbSNP
rs538058027 731 dbSNP
rs1014416091 735 dbSNP
rs1418334891 739 dbSNP
rs909542408 740 dbSNP
rs941140755 759 dbSNP
rs775999034 763 dbSNP
rs545481899 767 dbSNP
rs918312409 770 dbSNP
rs887290331 771 dbSNP
rs1005766314 777 dbSNP
rs1322619130 778 dbSNP
rs933830629 779 dbSNP
rs1017610218 781 dbSNP
rs1262468221 783 dbSNP
rs963067603 784 dbSNP
rs193260813 823 dbSNP
rs145406954 831 dbSNP
rs1050913276 835 dbSNP
rs1461487594 840 dbSNP
rs1167831939 846 dbSNP
rs942625781 850 dbSNP
rs1419897654 852 dbSNP
rs149229888 856 dbSNP
rs1250448493 858 dbSNP
rs1452580129 858 dbSNP
rs1215691128 859 dbSNP
rs1488823101 878 dbSNP
rs954433350 881 dbSNP
rs1202621910 882 dbSNP
rs1309634362 893 dbSNP
rs1298886890 894 dbSNP
rs1480920626 895 dbSNP
rs1369492183 899 dbSNP
rs1306228752 912 dbSNP
rs904506705 929 dbSNP
rs1158817058 930 dbSNP
rs1296108927 932 dbSNP
rs749346454 943 dbSNP
rs1354751319 944 dbSNP
rs1459251659 947 dbSNP
rs564079604 957 dbSNP
rs1172849842 962 dbSNP
rs553710934 965 dbSNP
rs1396860045 971 dbSNP
rs1194125448 974 dbSNP
rs143019993 990 dbSNP
rs1249819671 993 dbSNP
rs1175550436 995 dbSNP
rs978695534 996 dbSNP
rs1275592035 1002 dbSNP
rs925904275 1025 dbSNP
rs1346118798 1034 dbSNP
rs1283114659 1038 dbSNP
rs1014841468 1041 dbSNP
rs1304319861 1041 dbSNP
rs937342510 1043 dbSNP
rs1024473106 1056 dbSNP
rs1056226025 1059 dbSNP
rs917264887 1068 dbSNP
rs1311871107 1076 dbSNP
rs1331309003 1089 dbSNP
rs1432649735 1090 dbSNP
rs546751905 1095 dbSNP
rs1376983535 1099 dbSNP
rs950087572 1100 dbSNP
rs1227413629 1109 dbSNP
rs1361981290 1109 dbSNP
rs962371823 1109 dbSNP
rs16964079 1110 dbSNP
rs564377963 1111 dbSNP
rs564609533 1112 dbSNP
rs887238121 1115 dbSNP
rs62005278 1129 dbSNP
rs1015943 1135 dbSNP
rs911045498 1142 dbSNP
rs1201387854 1149 dbSNP
rs900107549 1159 dbSNP
rs561910535 1166 dbSNP
rs1029053704 1167 dbSNP
rs1043681900 1173 dbSNP
rs1259468019 1184 dbSNP
rs1240614717 1185 dbSNP
rs925165225 1185 dbSNP
rs1292304529 1187 dbSNP
rs954381599 1190 dbSNP
rs935996959 1191 dbSNP
rs1490556328 1196 dbSNP
rs1008569315 1207 dbSNP
rs1334634682 1209 dbSNP
rs1381417654 1210 dbSNP
rs1382748782 1213 dbSNP
rs1020026970 1233 dbSNP
rs868383435 1240 dbSNP
rs1458906041 1241 dbSNP
rs1181771108 1242 dbSNP
rs1164486007 1248 dbSNP
rs1474388545 1249 dbSNP
rs1420279407 1250 dbSNP
rs772816165 1264 dbSNP
rs1473766092 1268 dbSNP
rs368631991 1274 dbSNP
rs1207347494 1280 dbSNP
rs1053071440 1290 dbSNP
rs891916498 1291 dbSNP
rs925882268 1292 dbSNP
rs1230906335 1294 dbSNP
rs1014332221 1296 dbSNP
rs1046347181 1298 dbSNP
rs16964081 1301 dbSNP
rs1368391371 1305 dbSNP
rs1456889215 1311 dbSNP
rs991437400 1323 dbSNP
rs1435642529 1324 dbSNP
rs1365661810 1327 dbSNP
rs1393637289 1330 dbSNP
rs1325377038 1335 dbSNP
rs1408794213 1338 dbSNP
rs917214250 1346 dbSNP
rs1164013724 1355 dbSNP
rs1305820710 1357 dbSNP
rs1352001651 1363 dbSNP
rs950037888 1365 dbSNP
rs1391728631 1376 dbSNP
rs1311812364 1377 dbSNP
rs1047169996 1384 dbSNP
rs1195769982 1398 dbSNP
rs1450698706 1402 dbSNP
rs541993677 1411 dbSNP
rs1211321137 1419 dbSNP
rs1319793134 1422 dbSNP
rs1001634454 1424 dbSNP
rs1246903581 1425 dbSNP
rs1337209065 1440 dbSNP
rs560505595 1442 dbSNP
rs766374714 1448 dbSNP
rs1228852439 1455 dbSNP
rs1370222492 1457 dbSNP
rs1301124854 1459 dbSNP
rs1438848373 1469 dbSNP
rs1360282347 1475 dbSNP
rs1332860267 1483 dbSNP
rs1204583682 1491 dbSNP
rs1409671668 1493 dbSNP
rs1394583402 1495 dbSNP
rs1170924510 1505 dbSNP
rs1430768433 1508 dbSNP
rs941519292 1519 dbSNP
rs1192250765 1526 dbSNP
rs1478732316 1530 dbSNP
rs1246724539 1547 dbSNP
rs1180448745 1553 dbSNP
rs962898896 1567 dbSNP
rs1274634481 1572 dbSNP
rs1205666363 1578 dbSNP
rs993795969 1582 dbSNP
rs1278139006 1584 dbSNP
rs1334256098 1584 dbSNP
rs1441531469 1584 dbSNP
rs200202812 1584 dbSNP
rs3045814 1584 dbSNP
rs397753259 1584 dbSNP
rs72259871 1584 dbSNP
rs750635769 1584 dbSNP
rs199805280 1586 dbSNP
rs1484195357 1588 dbSNP
rs1038972047 1603 dbSNP
rs1025257275 1604 dbSNP
rs1375151061 1606 dbSNP
rs377395503 1607 dbSNP
rs1255924780 1608 dbSNP
rs997469067 1611 dbSNP
rs1416708134 1625 dbSNP
rs148201551 1629 dbSNP
rs890113970 1630 dbSNP
rs1468135250 1640 dbSNP
rs910938518 1668 dbSNP
rs1008558201 1684 dbSNP
rs1019974673 1685 dbSNP
rs1255059344 1686 dbSNP
rs1190263203 1687 dbSNP
rs552412756 1694 dbSNP
rs925194980 1712 dbSNP
rs540098895 1713 dbSNP
rs1348581957 1725 dbSNP
rs570799461 1765 dbSNP
rs549780159 1767 dbSNP
rs1311513250 1786 dbSNP
rs1462190587 1786 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions Hela
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in GSM1048188. RNA binding protein: AGO2. Condition:Hela_AGO2_CLIP_ptb_knockdown ...

- Xue Y; Ouyang K; Huang J; Zhou Y; Ouyang H; et al., 2013, Cell.

Article - Xue Y; Ouyang K; Huang J; Zhou Y; Ouyang H; et al.
- Cell, 2013
The induction of pluripotency or trans-differentiation of one cell type to another can be accomplished with cell-lineage-specific transcription factors. Here, we report that repression of a single RNA binding polypyrimidine-tract-binding (PTB) protein, which occurs during normal brain development via the action of miR-124, is sufficient to induce trans-differentiation of fibroblasts into functional neurons. Besides its traditional role in regulated splicing, we show that PTB has a previously undocumented function in the regulation of microRNA functions, suppressing or enhancing microRNA targeting by competitive binding on target mRNA or altering local RNA secondary structure. A key event during neuronal induction is the relief of PTB-mediated blockage of microRNA action on multiple components of the REST complex, thereby derepressing a large array of neuronal genes, including miR-124 and multiple neuronal-specific transcription factors, in nonneuronal cells. This converts a negative feedback loop to a positive one to elicit cellular reprogramming to the neuronal lineage.
LinkOut: [PMID: 23313552]
Experimental Support 2 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HEK293S
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in GSM1084078. RNA binding protein: AGO2. Condition:CLIP_nohippuristanol_rep2_AbnovaAb ...

- Karginov FV; Hannon GJ, 2013, Genes & development.

Article - Karginov FV; Hannon GJ
- Genes & development, 2013
When adapting to environmental stress, cells attenuate and reprogram their translational output. In part, these altered translation profiles are established through changes in the interactions between RNA-binding proteins and mRNAs. The Argonaute 2 (Ago2)/microRNA (miRNA) machinery has been shown to participate in stress-induced translational up-regulation of a particular mRNA, CAT-1; however, a detailed, transcriptome-wide understanding of the involvement of Ago2 in the process has been lacking. Here, we profiled the overall changes in Ago2-mRNA interactions upon arsenite stress by cross-linking immunoprecipitation (CLIP) followed by high-throughput sequencing (CLIP-seq). Ago2 displayed a significant remodeling of its transcript occupancy, with the majority of 3' untranslated region (UTR) and coding sequence (CDS) sites exhibiting stronger interaction. Interestingly, target sites that were destined for release from Ago2 upon stress were depleted in miRNA complementarity signatures, suggesting an alternative mode of interaction. To compare the changes in Ago2-binding patterns across transcripts with changes in their translational states, we measured mRNA profiles on ribosome/polysome gradients by RNA sequencing (RNA-seq). Increased Ago2 occupancy correlated with stronger repression of translation for those mRNAs, as evidenced by a shift toward lighter gradient fractions upon stress, while release of Ago2 was associated with the limited number of transcripts that remained translated. Taken together, these data point to a role for Ago2 and the mammalian miRNAs in mediating the translational component of the stress response.
LinkOut: [PMID: 23824327]
CLIP-seq Support 1 for dataset GSM1048188
Method / RBP HITS-CLIP / AGO2
Cell line / Condition Hela / Hela_AGO2_CLIP_ptb_knockdown
Location of target site ENST00000567389.1 | 3UTR | GGAUACACACACACACACAC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23313552 / GSE42701
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM1084078
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_nohippuristanol_rep2_AbnovaAb
Location of target site ENST00000567389.1 | 3UTR | UGGAUACACACACACACACACACACACAC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
70 hsa-miR-4742-5p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT065632 CLIC4 chloride intracellular channel 4 2 4
MIRT068170 TXLNA taxilin alpha 2 2
MIRT119024 TSN translin 2 2
MIRT165212 GRAMD3 GRAM domain containing 2B 2 2
MIRT175254 PSAT1 phosphoserine aminotransferase 1 2 4
MIRT213228 REST RE1 silencing transcription factor 2 6
MIRT296337 PARD6B par-6 family cell polarity regulator beta 2 2
MIRT316776 FOXC1 forkhead box C1 2 2
MIRT453943 XRCC6 X-ray repair cross complementing 6 2 6
MIRT454599 RPL13A ribosomal protein L13a 2 2
MIRT458485 RMI1 RecQ mediated genome instability 1 2 6
MIRT458650 SGPP2 sphingosine-1-phosphate phosphatase 2 2 2
MIRT459240 ADRBK1 G protein-coupled receptor kinase 2 2 2
MIRT461008 SYT7 synaptotagmin 7 2 2
MIRT462026 RIF1 replication timing regulatory factor 1 2 2
MIRT462103 TMEM214 transmembrane protein 214 2 2
MIRT463255 ZIC5 Zic family member 5 2 4
MIRT465190 TRPS1 transcriptional repressor GATA binding 1 2 2
MIRT470507 PPP1R11 protein phosphatase 1 regulatory inhibitor subunit 11 2 2
MIRT472356 TSPAN1 tetraspanin 1 2 2
MIRT473260 MIDN midnolin 2 2
MIRT477527 EIF4G2 eukaryotic translation initiation factor 4 gamma 2 2 4
MIRT485182 PTP4A1 protein tyrosine phosphatase type IVA, member 1 2 4
MIRT486461 MDM2 MDM2 proto-oncogene 2 2
MIRT492760 PER1 period circadian clock 1 2 8
MIRT496703 TRIM39 tripartite motif containing 39 2 2
MIRT497227 MORC2 MORC family CW-type zinc finger 2 2 2
MIRT499582 INTU inturned planar cell polarity protein 2 4
MIRT504081 C9orf40 chromosome 9 open reading frame 40 2 6
MIRT505484 SRSF2 serine and arginine rich splicing factor 2 2 2
MIRT513255 FBXO17 F-box protein 17 2 2
MIRT525061 FRK fyn related Src family tyrosine kinase 2 2
MIRT528798 RAB32 RAB32, member RAS oncogene family 2 2
MIRT534357 SFT2D2 SFT2 domain containing 2 2 2
MIRT538731 CAPN1 calpain 1 2 2
MIRT550792 WARS2 tryptophanyl tRNA synthetase 2, mitochondrial 2 2
MIRT553994 SRPR SRP receptor alpha subunit 2 4
MIRT568102 CDKN1B cyclin dependent kinase inhibitor 1B 2 2
MIRT570107 SLC18B1 solute carrier family 18 member B1 2 2
MIRT570823 RPL7L1 ribosomal protein L7 like 1 2 2
MIRT572004 HMGB1 high mobility group box 1 2 2
MIRT572352 PCYT2 phosphate cytidylyltransferase 2, ethanolamine 2 2
MIRT609716 TMEM132C transmembrane protein 132C 2 2
MIRT613982 LRRC40 leucine rich repeat containing 40 2 2
MIRT620740 CCL16 C-C motif chemokine ligand 16 2 2
MIRT625074 C15orf41 chromosome 15 open reading frame 41 2 4
MIRT627941 NNT nicotinamide nucleotide transhydrogenase 2 2
MIRT629941 IGSF6 immunoglobulin superfamily member 6 2 2
MIRT633396 FBXW8 F-box and WD repeat domain containing 8 2 2
MIRT635846 ZNF264 zinc finger protein 264 2 2
MIRT638086 ZNF652 zinc finger protein 652 2 2
MIRT643996 TCHP trichoplein keratin filament binding 2 2
MIRT660020 C1GALT1 core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1 2 2
MIRT660161 BRCC3 BRCA1/BRCA2-containing complex subunit 3 2 2
MIRT668887 CSRP1 cysteine and glycine rich protein 1 2 2
MIRT676729 METTL14 methyltransferase like 14 2 2
MIRT677210 MURC caveolae associated protein 4 2 2
MIRT685949 PTGIS prostaglandin I2 synthase 2 2
MIRT687816 ITPRIPL2 inositol 1,4,5-trisphosphate receptor interacting protein like 2 2 2
MIRT689900 SOD2 superoxide dismutase 2 2 2
MIRT698214 TMEM248 transmembrane protein 248 2 2
MIRT698279 TMEM2 transmembrane protein 2 2 2
MIRT698758 STK4 serine/threonine kinase 4 2 2
MIRT698789 STK38 serine/threonine kinase 38 2 2
MIRT703152 GPR137C G protein-coupled receptor 137C 2 2
MIRT704408 CTPS1 CTP synthase 1 2 2
MIRT705067 C4orf32 family with sequence similarity 241 member A 2 2
MIRT710201 FLVCR1 feline leukemia virus subgroup C cellular receptor 1 2 2
MIRT714495 HSPA4 heat shock protein family A (Hsp70) member 4 2 2
MIRT720082 TNRC6B trinucleotide repeat containing 6B 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-4742-5p Imatinib 5291 NSC743414 approved sensitive High Chronic Myelogenous Leukemia tissue
hsa-miR-4742-5p Gefitinib 123631 NSC715055 approved resistant cell line (HCC827)
hsa-miR-4742-5p Osimertinib 71496458 NSC779217 approved resistant cell line (HCC827)
hsa-miR-4742-5p Cisplatin 5460033 NSC119875 approved resistant cell line (A549)
hsa-miR-4742-5p Gefitinib 123631 NSC715055 approved resistant cell line (HCC827)
hsa-miR-4742-5p Paclitaxel 36314 NSC125973 approved resistant cell line (BAS)
hsa-miR-4742-5p Paclitaxel 36314 NSC125973 approved sensitive cell line (A2780)
hsa-miR-4742-5p Cisplatin 5460033 NSC119875 approved sensitive cell line (A2780)
hsa-miR-4742-5p Gemcitabine 60750 NSC613327 approved sensitive cell line (PANC-1) (1500 ng/ml)

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