miRTarBase - #MIRT625262


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pre-miRNA Information
pre-miRNA hsa-mir-1306   
Genomic Coordinates chr22: 20086058 - 20086142
Synonyms MIRN1306, hsa-mir-1306, MIR1306
Description Homo sapiens miR-1306 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-1306-5p
Sequence 15| CCACCUCCCCUGCAAACGUCCA |36
Evidence Not_experimental
Experiments
DRVs in miRNA
Mutant ID Mutant Position Mutant Source
COSM5858927 8 COSMIC
COSM8222405 15 COSMIC
COSM1032175 17 COSMIC
COSM122562 22 COSMIC
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1197492175 14 dbSNP
rs1245517093 17 dbSNP
Putative Targets

miRNA Expression profile
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol ZNF566   
Synonyms -
Description zinc finger protein 566
Transcript NM_001145343   
Other Transcripts NM_001145344 , NM_001145345 , NM_032838   
Expression
Putative miRNA Targets on ZNF566
3'UTR of ZNF566
(miRNA target sites are highlighted)		 
>ZNF566|NM_001145343|3'UTR
   1 TGAAACAGAATATATGAAATGTGTAGGGAGGCTTTTAATTATGGCTCAAAACAGAATTTATCTTGTTAATAATTCCTCTA
  81 GATAGAATAATGTAGAAACATTTTATTTGTGGACTACAGCTTATTCAGCCTGGGAAAAATAATGTTGGAGAAATACTCTA
 161 TGAATAGAATATACTTTGGAAGCCCTTAACTAAACGCTTACTTCTCTTGACATCAGATAATTCAGTCTAGCAATATGATA
 241 GATAATTCAGTCTGTCATACTGAAAATGACAGCACTTTTAACACCTTTCTAACCTTCTTAACGTCAGAGAATTTTTGTAG
 321 AAATGTAGTCCTGTGATTGTCATTTTTTCCCCTAATTTCTCTAATTGTTACATTCTTAGTATTTTAATCCATATTAAATT
 401 TATATGGCTATAAATTTCATCTGTTTACATCCTGATTTGTATACTATTTTAAAAATACCTTTAGTACCTGGGAGAAGTGA
 481 CCTCTTTATTTTTGAAGATGGCTTATTCTTTTTGTTCTTTATAACATTAAGGCTTTCTTATTGTAAAAATGTTCATGAAC
 561 GACATTTTACTCAATAGAGATTCTTCATTATCTTCATGGTGTTTTGTTGTGTTACTGTAATATCACTTATGAAATCCTAT
 641 TGGTGGATATCGTAGTCTCCTCTAGATATTTTGCCATAATACATGCCAAAATACAAGTCCCTGCTGGACATTCTCCCTAA
 721 GCACATCTTTGTATCATATCTTTTAATTGCAGAAGTAATGTGTGAATATATTTTCCTTATAAAAGATGCAAACATTACAA
 801 AAAGGCAAATGTACCCTTTGACCATATCCCAAAGGATAGTCTTTATCAGTTCATTATTTATTGCTGATCATTTTTCTGTT
 881 CATATATACATGCGTGTCTCAGTAAAAATTATAAAATGGGGGATAATTATAATACCTACCTCATAATGCTTTGTGAGGAT
 961 TAAATGAATTAAGATCGATAAAGTGCTTAGAATTGTGCCTGACATGATAAATACATACTCACTGAATGTTAGTCATCGTT
1041 ATTATATTCATCATCATCAGTATTATTATTTGTAGAAAGGCTTTTTAACTTCTGCAGAACTTAGTCACCATTAGGCAGGG
1121 TGTTTGACTGAAGAAAGACCCTTTGAAGGTAACAAGTTAAGAAAATTTCCCATCATCATGTACTTACTATTGAACATGAA
1201 ATAATCCTAGGTGTTGGGGGGGAAAGTACTGTGAATAATGTGTGTGAAGGACTTTATTCCGACTAATACTCTTTTTGTCG
1281 CATTATATACCCAGTAAAAAAGAAAAGAGAACATAAGCAAAATATTGGTGCACTAATGAGGAAAAAAAGTATGAAAAGAG
1361 AAACAGCATCATATTTAAAAAATGGACAGAGATAGAAACATAGTTACAGATTTAAAAGGTTCTGTTGAATATTATGCTTT
1441 TTTCTAATATGTTTGAAAATTTAAACAAAATGGTTTTTAAGGAAAATATACATCAATATTGACTCCAAGAAAATTAGGAC
1521 TCTTCAAAGACTCTCATAAACACAGAGAACAGGGAAAAATTAGCATGTGATCAGTTAACTATTACTAATGAAGCACCAAA
1601 TCCAGTTTCTTTCTAAGGAAAACTTTATCAAATGTTCAAGGAACTATTTCAGTTATATAGAAGTACACATCTTGGCTCAC
1681 GCCTGTAATCCCAGCACTTTGGGAGGCTGAGATGGAAGGATCATTTGAGGCCAGGAGCTTGAGACCAGCCTGGCCAACAT
1761 GTTGAAACCCCATTTTTACTCAAAAATACAAAACTTAGCCAGGCATGGTGGCACATGCCTGTAATCCCAGCTACTGGGGA
1841 GGCTGAGGCAGGAGAATCACTTGAATGCAGGAGGTGGAGGTTGCAGTGAGCCAAGATCACGCCATGGCACTTCAGCCTGA
1921 GCGACAGAATGAGACTATTAAAAAAAAAAAAAAAAAGTCCACAGTGTAGCTTTGTTTGGGGTTAAGTTAGTGTTTTGAAA
2001 TGGGCCTTCCCTGTGCTCAAAACATGCTCAGCAAGCAGCTCCCCACGCTGGACAGATCGCATATGTGGAAGGATGAAGTT
2081 TATGTCTGTAGAACTGTTATTTTATGCCCCACTTCCTTTTTTCTTAGATCCTGTGTAGACGGGTCTCTCTGAACATTGTG
2161 TTACTTTACTTTACTGGCATAAGGAAGTAAAATATTTCATAATAAATTTGAGAAAAGTAGAGTGAGCAAAAATACCTGCA
2241 AATGAGAGAATTACTAAAAATGGACTGTTGTAATGTTTTGCGTTATCAAAATGAAAACTGCCAAATGAGATTTTGTTTAC
2321 TTTCTTTTCTTGTGTGCTTATGTCTTTTATAAAGTTCTTCATCTAAAATTATAGAGATAGTGCATTTGCACCCAAATTAA
2401 TGAAACAATACCATTAAAGAGAAAGAAAAGGGGCTGGGCACAGTGGCTTACGCCTGTAATCCCAGTGCTTTGGGAGGCCA
2481 AGGCAGGGGGCAGCCTGGCCAATATAGTGAAACCCCATCTCTACTAAAAATACAAAAATTAGCTGGGCGTGGTGGCATGT
2561 GCCTGTAGTCCCAGCTGCTCGGAAGGCTGAGGCAGGAGAATCGCTTGAACCCGGGAGGCGGAGGTTGCAGTGAGCTGAGA
2641 TCCTGACTGCACTCCAGCCTGCATGACAGAGTCTCAAAAAATCTGTCTCAAAAAAAAAAAAAAAAAAGAAAGAAAAAATG
2721 ATTATCTTTGCCCTTCTCCGTTCCTCATTCCCTCCCCTCTGTCAATTTTCTTCTGAATAATATTTAAAGGTTGTGTATAT
2801 TACCCATATATTTCTTCATGCTAAAACATTAACACACAATTATTTTATTATGTTTTTACAGAAAAATGGATAACTATACA
2881 TTTCCCTGAAATTTGCTTTTTTACATTCAACTGTACATTTTGGATTTTCCTTCAATAGATGATGATCTAACAGTCTTTCT
2961 GATGGTTACAGTATGTTCCACAGTGTTATTTACCAATGCCTTTTCAACCACTTTCCCAATTGTGATATTATGGATTGTTT
3041 GCGCTTTTTTGCCATCTAAAAGTAATGCTGCAACAAACACTTTGTATTCTTGTCTGTTTTATTTCTATAAAATAAGCTTC
3121 CCAAGTCATTTCCAGTGTTTTTGCTTTGTTTTGTTTTGAGACAGAGTTTCACTCTTGTTTCCCAGGCTGGAGTGCAATGG
3201 CGCAATCTTGGCTTACTGCAATCTCCGCCTCCCGGGTTCAAGAGATTCTCCTGCCTCAGCCTCCCAAGTAGCTGGGGTTA
3281 CAGGTATATGCCACTACGCCTGGAAAATTTTGTATTTTTAGTAGAGACGGCATTTTTCCATGTTGGTCAGGCTGGTCTCG
3361 AACTCCTGACCTCAGGTGATCCACCCTCCTCGGCCTCCCAAAGTGCTGGCATTATAGGCATGAGCCACCGCACCCGGCGT
3441 CATTTCCAGTGTTTTCTATGTTTCCTAGGAAGGTTTTGCTTCTGGAAGATTTCAGAGGGCAAGAGAATAAAGGAGTGGAG
3521 TGCAGTTTTTCATATATGTGATTCTGTGAGTGTGTATACACAGAGATTTAATATTTTAATACATCAGGAATTGATTATAC
3601 GATCTAATGCAGGATGTCAGACTTGTTTCTATCCAGGAATAAAACCAGTTATGCCAGAAGTAACTATTATTCACCTTTCT
3681 CCTACTGAATTAAAATACTATCAGTTGTATATTAAATGCTCACATCTATTTCTGTTCTCCATATTCTAGCAATCCTTGAC
3761 ACTTTTCAATAGCTTTTATTACTTGGAAATAAAGATGTATGTATATATTATTAATATATAGTTTATTATTTGGAAATAAA
3841 GATGTTTCTTCATGAGAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' accugcaaACGUCCCCUCCACc 5'
                  ||||  ||||||| 
Target 5' cacttgaaTGCA--GGAGGTGg 3'
 1858 - 1877 150.00 -18.70
2 
miRNA  3' accuGCAAAC----GUCC----CCUCCAcc 5'
              || |||    |:||    ||||||  
Target 5' gaatCGCTTGAACCCGGGAGGCGGAGGTtg 3'
 2598 - 2627 130.00 -17.92
3 
miRNA  3' accugcaaACGUCCCCUCC-ACc 5'
                  | | ||||||| || 
Target 5' atcccagcTACTGGGGAGGCTGa 3'
 1824 - 1846 122.00 -16.50
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN30572905 9 COSMIC
COSN31552388 40 COSMIC
COSN30454599 42 COSMIC
COSN30461026 47 COSMIC
COSN30527951 96 COSMIC
COSN20992131 126 COSMIC
COSN30120579 150 COSMIC
COSN17886483 340 COSMIC
COSN1767338 648 COSMIC
COSN1214945 681 COSMIC
COSN23811850 858 COSMIC
COSN21282681 866 COSMIC
COSN29476270 1215 COSMIC
COSN6143518 1563 COSMIC
COSN1767337 1596 COSMIC
COSN2482472 1959 COSMIC
COSN7125685 2025 COSMIC
COSN43149 2425 COSMIC
COSN20093581 2708 COSMIC
COSN24718307 2775 COSMIC
COSN20115765 2840 COSMIC
COSN19295034 2845 COSMIC
COSN15753147 3221 COSMIC
COSN14508409 3226 COSMIC
COSN6143516 3227 COSMIC
COSN7125684 3254 COSMIC
COSN18723512 3415 COSMIC
COSN1767336 3439 COSMIC
COSN17792647 3601 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1413602665 2 dbSNP
rs745825119 6 dbSNP
rs781229907 7 dbSNP
rs1249660892 9 dbSNP
rs757120691 12 dbSNP
rs201254175 15 dbSNP
rs1474661756 19 dbSNP
rs541613918 23 dbSNP
rs879222351 25 dbSNP
rs1164973715 28 dbSNP
rs1254391161 31 dbSNP
rs758597002 36 dbSNP
rs752929296 40 dbSNP
rs1286704373 42 dbSNP
rs1018668096 47 dbSNP
rs1166679932 51 dbSNP
rs1370474516 52 dbSNP
rs1007730724 56 dbSNP
rs888749003 57 dbSNP
rs1309901539 62 dbSNP
rs1353853771 65 dbSNP
rs2945986 83 dbSNP
rs1313661184 90 dbSNP
rs994494338 92 dbSNP
rs1463372410 94 dbSNP
rs1267330185 98 dbSNP
rs1342747485 101 dbSNP
rs1206738244 107 dbSNP
rs1254800489 117 dbSNP
rs58841825 127 dbSNP
rs113597327 133 dbSNP
rs1182088734 142 dbSNP
rs995496172 145 dbSNP
rs187019062 158 dbSNP
rs145549196 160 dbSNP
rs895649252 164 dbSNP
rs1243458359 166 dbSNP
rs1050901057 168 dbSNP
rs1465552266 183 dbSNP
rs996030836 191 dbSNP
rs1303699761 192 dbSNP
rs1055847191 195 dbSNP
rs1053747060 197 dbSNP
rs111385941 199 dbSNP
rs1339235037 204 dbSNP
rs935215508 217 dbSNP
rs923628271 228 dbSNP
rs1230557200 232 dbSNP
rs1346543357 250 dbSNP
rs1433616475 254 dbSNP
rs937423239 258 dbSNP
rs1257466661 259 dbSNP
rs1484673735 261 dbSNP
rs1203806766 266 dbSNP
rs926095133 268 dbSNP
rs181187712 272 dbSNP
rs948996421 273 dbSNP
rs1191061545 275 dbSNP
rs1393791072 277 dbSNP
rs750849551 289 dbSNP
rs916343997 293 dbSNP
rs1361168872 296 dbSNP
rs1451921108 297 dbSNP
rs764765319 300 dbSNP
rs74468389 302 dbSNP
rs762269659 303 dbSNP
rs2385797 307 dbSNP
rs555513183 316 dbSNP
rs575799651 317 dbSNP
rs1018862629 319 dbSNP
rs1370339882 332 dbSNP
rs1185330654 335 dbSNP
rs1463500334 337 dbSNP
rs1302744072 342 dbSNP
rs866690081 344 dbSNP
rs962283381 349 dbSNP
rs985685098 359 dbSNP
rs538026137 362 dbSNP
rs1210962244 391 dbSNP
rs953239550 394 dbSNP
rs1027389715 403 dbSNP
rs1251724106 406 dbSNP
rs1008855755 419 dbSNP
rs994443529 432 dbSNP
rs1448317716 438 dbSNP
rs1427388455 440 dbSNP
rs1417322044 451 dbSNP
rs1287273674 458 dbSNP
rs1412960701 458 dbSNP
rs557654065 470 dbSNP
rs996662097 481 dbSNP
rs1349280944 484 dbSNP
rs1437133629 487 dbSNP
rs1014763764 501 dbSNP
rs1295177749 505 dbSNP
rs1014593247 513 dbSNP
rs1227185531 523 dbSNP
rs1288662288 527 dbSNP
rs895609468 532 dbSNP
rs1288193754 540 dbSNP
rs1056028592 559 dbSNP
rs535618104 560 dbSNP
rs568299351 561 dbSNP
rs553178228 569 dbSNP
rs1365114169 572 dbSNP
rs188600418 573 dbSNP
rs1162999935 579 dbSNP
rs1412845069 580 dbSNP
rs946001973 581 dbSNP
rs913243934 582 dbSNP
rs1323107970 587 dbSNP
rs570653556 594 dbSNP
rs1406230654 595 dbSNP
rs1041279770 596 dbSNP
rs1408729171 612 dbSNP
rs894802638 618 dbSNP
rs1351741253 626 dbSNP
rs1412573076 629 dbSNP
rs1166799756 630 dbSNP
rs1054906272 633 dbSNP
rs1356107164 638 dbSNP
rs1447535196 640 dbSNP
rs1229233022 643 dbSNP
rs931043717 651 dbSNP
rs944285857 652 dbSNP
rs911511014 659 dbSNP
rs1484056940 664 dbSNP
rs111784006 667 dbSNP
rs1185699234 668 dbSNP
rs1189194046 673 dbSNP
rs973560677 673 dbSNP
rs763197441 681 dbSNP
rs1473038776 682 dbSNP
rs940823386 683 dbSNP
rs1417353206 692 dbSNP
rs986018843 700 dbSNP
rs908142008 715 dbSNP
rs1371874872 717 dbSNP
rs17238963 718 dbSNP
rs954747543 721 dbSNP
rs920320570 723 dbSNP
rs1029388776 730 dbSNP
rs1449269805 738 dbSNP
rs1197713492 741 dbSNP
rs1393464779 745 dbSNP
rs1228353131 759 dbSNP
rs1298905365 759 dbSNP
rs974882260 762 dbSNP
rs958373818 764 dbSNP
rs1198793507 767 dbSNP
rs973137491 770 dbSNP
rs1032402265 780 dbSNP
rs1443191073 789 dbSNP
rs1202450329 794 dbSNP
rs1245991562 795 dbSNP
rs961653454 799 dbSNP
rs1014544871 809 dbSNP
rs1013958966 814 dbSNP
rs1275951532 821 dbSNP
rs770197854 826 dbSNP
rs1391933025 827 dbSNP
rs1034295362 847 dbSNP
rs1452101111 854 dbSNP
rs1171453140 858 dbSNP
rs1402533344 859 dbSNP
rs999369228 861 dbSNP
rs1365910852 863 dbSNP
rs1386919151 867 dbSNP
rs1434755544 870 dbSNP
rs1321877368 871 dbSNP
rs868176229 876 dbSNP
rs1367974003 878 dbSNP
rs1231217962 884 dbSNP
rs1001752877 893 dbSNP
rs1345753966 896 dbSNP
rs1221155968 900 dbSNP
rs1266407975 918 dbSNP
rs1464319546 919 dbSNP
rs902342419 924 dbSNP
rs1024937619 926 dbSNP
rs1013493342 929 dbSNP
rs1198025505 935 dbSNP
rs894840898 935 dbSNP
rs1478687160 939 dbSNP
rs868820545 940 dbSNP
rs1156529186 943 dbSNP
rs530936827 953 dbSNP
rs904369912 957 dbSNP
rs1043129561 965 dbSNP
rs1457109392 966 dbSNP
rs1347653097 973 dbSNP
rs1306203767 975 dbSNP
rs745654249 976 dbSNP
rs1385622162 979 dbSNP
rs569821932 983 dbSNP
rs1323397011 985 dbSNP
rs1331764987 986 dbSNP
rs1438687130 1001 dbSNP
rs930970874 1002 dbSNP
rs1441853814 1004 dbSNP
rs898241931 1032 dbSNP
rs776329548 1034 dbSNP
rs1209171876 1037 dbSNP
rs891925341 1038 dbSNP
rs1190417902 1041 dbSNP
rs1179387288 1043 dbSNP
rs1250670066 1044 dbSNP
rs1472725439 1046 dbSNP
rs770877883 1060 dbSNP
rs1160871084 1062 dbSNP
rs1480539134 1063 dbSNP
rs1460476101 1066 dbSNP
rs1456655607 1068 dbSNP
rs1163247561 1077 dbSNP
rs1270625186 1098 dbSNP
rs1179633001 1102 dbSNP
rs1482425856 1106 dbSNP
rs1041434354 1109 dbSNP
rs1306237199 1110 dbSNP
rs1251992683 1112 dbSNP
rs944080220 1118 dbSNP
rs866927383 1124 dbSNP
rs1207168013 1125 dbSNP
rs1290376022 1137 dbSNP
rs911445128 1146 dbSNP
rs1050028552 1148 dbSNP
rs1243784458 1155 dbSNP
rs1266035607 1162 dbSNP
rs908047064 1169 dbSNP
rs931442005 1178 dbSNP
rs1394489365 1181 dbSNP
rs1273321962 1196 dbSNP
rs184301197 1205 dbSNP
rs1278311576 1206 dbSNP
rs1183909699 1212 dbSNP
rs530053945 1219 dbSNP
rs1326154618 1223 dbSNP
rs1422504809 1223 dbSNP
rs975164194 1241 dbSNP
rs1427137218 1245 dbSNP
rs530945735 1247 dbSNP
rs142921732 1255 dbSNP
rs1032464225 1259 dbSNP
rs777298708 1260 dbSNP
rs757909083 1261 dbSNP
rs1313138250 1269 dbSNP
rs1351172546 1269 dbSNP
rs1341997533 1270 dbSNP
rs1296702041 1277 dbSNP
rs966560155 1277 dbSNP
rs1444218519 1278 dbSNP
rs1024800795 1279 dbSNP
rs180851221 1280 dbSNP
rs895073926 1281 dbSNP
rs17206393 1285 dbSNP
rs995587866 1287 dbSNP
rs1446755305 1290 dbSNP
rs898152356 1291 dbSNP
rs564993702 1296 dbSNP
rs1003899428 1303 dbSNP
rs1472066946 1315 dbSNP
rs746844237 1317 dbSNP
rs1172587099 1325 dbSNP
rs773167664 1328 dbSNP
rs1001467246 1332 dbSNP
rs968500967 1333 dbSNP
rs1420614975 1334 dbSNP
rs1021466756 1342 dbSNP
rs933477700 1350 dbSNP
rs543020642 1362 dbSNP
rs1365797830 1364 dbSNP
rs750757793 1373 dbSNP
rs76872723 1377 dbSNP
rs1041157898 1383 dbSNP
rs1008620762 1393 dbSNP
rs889806566 1401 dbSNP
rs1257336121 1403 dbSNP
rs554302270 1406 dbSNP
rs1204900748 1411 dbSNP
rs1050395816 1418 dbSNP
rs1462981622 1422 dbSNP
rs1462930719 1431 dbSNP
rs1207217627 1437 dbSNP
rs1247998722 1440 dbSNP
rs936708786 1443 dbSNP
rs1266687855 1446 dbSNP
rs931566518 1449 dbSNP
rs1188757196 1451 dbSNP
rs2967531 1473 dbSNP
rs8110282 1481 dbSNP
rs74179501 1482 dbSNP
rs940217206 1485 dbSNP
rs199817980 1487 dbSNP
rs553139799 1488 dbSNP
rs1378600007 1490 dbSNP
rs80095335 1492 dbSNP
rs1389038044 1499 dbSNP
rs992405356 1501 dbSNP
rs1408014056 1509 dbSNP
rs547544293 1523 dbSNP
rs1386832273 1536 dbSNP
rs570811075 1543 dbSNP
rs992606678 1545 dbSNP
rs938315941 1547 dbSNP
rs559033250 1554 dbSNP
rs537017337 1555 dbSNP
rs980216228 1567 dbSNP
rs754562634 1570 dbSNP
rs1267921985 1572 dbSNP
rs1364040370 1574 dbSNP
rs529205519 1579 dbSNP
rs1218570492 1583 dbSNP
rs1160898943 1585 dbSNP
rs1191809172 1602 dbSNP
rs1271382291 1604 dbSNP
rs143867950 1606 dbSNP
rs764173146 1627 dbSNP
rs988624480 1628 dbSNP
rs955875206 1630 dbSNP
rs1015200514 1633 dbSNP
rs1162665534 1639 dbSNP
rs1184735239 1643 dbSNP
rs1458008298 1646 dbSNP
rs1003803103 1657 dbSNP
rs548324411 1658 dbSNP
rs530014751 1659 dbSNP
rs779631348 1666 dbSNP
rs1008317647 1670 dbSNP
rs889743788 1676 dbSNP
rs763111353 1678 dbSNP
rs1288520925 1680 dbSNP
rs1374577087 1701 dbSNP
rs1225823085 1711 dbSNP
rs1288392373 1715 dbSNP
rs1321618450 1718 dbSNP
rs139846631 1721 dbSNP
rs549559667 1722 dbSNP
rs1050761377 1723 dbSNP
rs1482075785 1726 dbSNP
rs1181747336 1728 dbSNP
rs1252798287 1729 dbSNP
rs1471078565 1731 dbSNP
rs998098818 1732 dbSNP
rs900668309 1734 dbSNP
rs1262692410 1743 dbSNP
rs995498751 1747 dbSNP
rs566021870 1755 dbSNP
rs1308324616 1760 dbSNP
rs1313607502 1762 dbSNP
rs1355886951 1768 dbSNP
rs1444872872 1769 dbSNP
rs1246535096 1781 dbSNP
rs867045496 1783 dbSNP
rs1384944335 1794 dbSNP
rs925497481 1797 dbSNP
rs765524273 1798 dbSNP
rs1247353165 1808 dbSNP
rs1317707000 1811 dbSNP
rs1037265149 1812 dbSNP
rs1042431710 1827 dbSNP
rs940165864 1841 dbSNP
rs1434060250 1842 dbSNP
rs945321619 1851 dbSNP
rs1385448028 1854 dbSNP
rs1290261373 1867 dbSNP
rs1439756977 1868 dbSNP
rs1236717000 1879 dbSNP
rs896662282 1885 dbSNP
rs1185401602 1892 dbSNP
rs759886122 1900 dbSNP
rs1448390280 1904 dbSNP
rs918014586 1906 dbSNP
rs1420966117 1917 dbSNP
rs112631243 1920 dbSNP
rs1163672693 1921 dbSNP
rs532367798 1922 dbSNP
rs147541695 1923 dbSNP
rs1188544117 1925 dbSNP
rs1429452255 1927 dbSNP
rs1264381395 1930 dbSNP
rs372361786 1933 dbSNP
rs1488287611 1935 dbSNP
rs1292538656 1936 dbSNP
rs1224844207 1938 dbSNP
rs1340192213 1939 dbSNP
rs543488007 1940 dbSNP
rs1270870695 1948 dbSNP
rs1226679761 1950 dbSNP
rs1217699241 1951 dbSNP
rs1326787881 1955 dbSNP
rs1205291809 1957 dbSNP
rs1350276021 1957 dbSNP
rs763024014 1957 dbSNP
rs878897843 1957 dbSNP
rs962775486 1958 dbSNP
rs188472357 1960 dbSNP
rs757638723 1971 dbSNP
rs1425427587 1989 dbSNP
rs1470531598 2001 dbSNP
rs1179006485 2010 dbSNP
rs914467905 2011 dbSNP
rs1386851724 2016 dbSNP
rs559342941 2020 dbSNP
rs1319486315 2024 dbSNP
rs1328293590 2026 dbSNP
rs1434389780 2032 dbSNP
rs1274521702 2039 dbSNP
rs1015439494 2043 dbSNP
rs988739689 2044 dbSNP
rs955005743 2045 dbSNP
rs560934925 2046 dbSNP
rs770662832 2047 dbSNP
rs867230772 2058 dbSNP
rs1286244947 2059 dbSNP
rs1449441205 2061 dbSNP
rs900699690 2072 dbSNP
rs531164539 2084 dbSNP
rs1019444306 2085 dbSNP
rs987075006 2091 dbSNP
rs904108309 2098 dbSNP
rs1453429747 2100 dbSNP
rs954145532 2109 dbSNP
rs1042630443 2113 dbSNP
rs1387732895 2116 dbSNP
rs1174436268 2122 dbSNP
rs1403721902 2123 dbSNP
rs1028853131 2126 dbSNP
rs995444806 2130 dbSNP
rs1346184096 2135 dbSNP
rs746900403 2140 dbSNP
rs1286619536 2141 dbSNP
rs1056973796 2143 dbSNP
rs1239498391 2164 dbSNP
rs1201913478 2174 dbSNP
rs532948640 2176 dbSNP
rs1354142811 2183 dbSNP
rs1209116314 2184 dbSNP
rs1291914372 2191 dbSNP
rs1202609660 2198 dbSNP
rs926671224 2199 dbSNP
rs1251246424 2201 dbSNP
rs1015766721 2203 dbSNP
rs1195093851 2206 dbSNP
rs973950331 2207 dbSNP
rs1365857640 2208 dbSNP
rs1472112162 2215 dbSNP
rs76731128 2219 dbSNP
rs1230825911 2235 dbSNP
rs1322613168 2239 dbSNP
rs1306476379 2249 dbSNP
rs908473333 2250 dbSNP
rs1283495892 2256 dbSNP
rs1406461922 2272 dbSNP
rs982654307 2275 dbSNP
rs955066995 2281 dbSNP
rs1029320052 2282 dbSNP
rs574752403 2289 dbSNP
rs1361051408 2293 dbSNP
rs1348074781 2302 dbSNP
rs1016130952 2307 dbSNP
rs1480765634 2329 dbSNP
rs1197137018 2333 dbSNP
rs1327620196 2337 dbSNP
rs1253105412 2345 dbSNP
rs1440991394 2348 dbSNP
rs1392414119 2354 dbSNP
rs1399286054 2361 dbSNP
rs1301656547 2371 dbSNP
rs1166772237 2374 dbSNP
rs1372527451 2380 dbSNP
rs1465828138 2382 dbSNP
rs1056627873 2408 dbSNP
rs1002814853 2411 dbSNP
rs905593771 2414 dbSNP
rs554141503 2419 dbSNP
rs1471739401 2423 dbSNP
rs963847475 2426 dbSNP
rs1033136358 2433 dbSNP
rs1432744486 2438 dbSNP
rs1001043749 2443 dbSNP
rs559624252 2451 dbSNP
rs374113693 2452 dbSNP
rs1253869833 2459 dbSNP
rs1009803047 2462 dbSNP
rs1460702484 2478 dbSNP
rs1244348423 2479 dbSNP
rs1263593061 2487 dbSNP
rs1187183578 2489 dbSNP
rs896516388 2491 dbSNP
rs947006779 2503 dbSNP
rs914248711 2506 dbSNP
rs1429141453 2509 dbSNP
rs1052984198 2514 dbSNP
rs1469141564 2524 dbSNP
rs1176909709 2531 dbSNP
rs1407972447 2537 dbSNP
rs934593076 2548 dbSNP
rs773038293 2549 dbSNP
rs1362112084 2565 dbSNP
rs1326649170 2573 dbSNP
rs113543687 2580 dbSNP
rs111945596 2581 dbSNP
rs921320654 2582 dbSNP
rs74174409 2583 dbSNP
rs937984224 2584 dbSNP
rs974136652 2585 dbSNP
rs1326017837 2586 dbSNP
rs962647305 2602 dbSNP
rs1332765404 2603 dbSNP
rs1486275224 2609 dbSNP
rs1015548889 2612 dbSNP
rs868070297 2613 dbSNP
rs908366899 2614 dbSNP
rs563850237 2615 dbSNP
rs1431174738 2617 dbSNP
rs1455430235 2619 dbSNP
rs1158380614 2620 dbSNP
rs982693779 2623 dbSNP
rs1454939072 2634 dbSNP
rs1006052960 2643 dbSNP
rs1291309420 2646 dbSNP
rs1004205562 2651 dbSNP
rs960977326 2655 dbSNP
rs1364364235 2657 dbSNP
rs933925352 2661 dbSNP
rs1284744798 2664 dbSNP
rs1347849014 2670 dbSNP
rs1339106443 2672 dbSNP
rs1455802700 2675 dbSNP
rs1218505466 2682 dbSNP
rs1318029425 2682 dbSNP
rs1388211291 2685 dbSNP
rs1159417742 2689 dbSNP
rs1223574640 2690 dbSNP
rs75244908 2691 dbSNP
rs1271311359 2696 dbSNP
rs922489825 2702 dbSNP
rs558923396 2703 dbSNP
rs796516105 2704 dbSNP
rs199639536 2705 dbSNP
rs1243459036 2706 dbSNP
rs1225985759 2708 dbSNP
rs1304654792 2708 dbSNP
rs1364424203 2708 dbSNP
rs1379996382 2708 dbSNP
rs1424729363 2708 dbSNP
rs1440532246 2708 dbSNP
rs35019644 2708 dbSNP
rs889068246 2708 dbSNP
rs372137979 2709 dbSNP
rs1313536961 2711 dbSNP
rs184737271 2712 dbSNP
rs975109626 2712 dbSNP
rs144046324 2713 dbSNP
rs1035705535 2715 dbSNP
rs1204010976 2716 dbSNP
rs1233274032 2716 dbSNP
rs1481464081 2719 dbSNP
rs1032797538 2721 dbSNP
rs1384498536 2723 dbSNP
rs1002350805 2726 dbSNP
rs193263297 2736 dbSNP
rs1283078256 2740 dbSNP
rs1205420283 2751 dbSNP
rs1409046012 2754 dbSNP
rs1352193457 2756 dbSNP
rs978506252 2757 dbSNP
rs1281938276 2761 dbSNP
rs73614568 2765 dbSNP
rs1335402012 2770 dbSNP
rs1382680786 2776 dbSNP
rs1384221957 2784 dbSNP
rs1021119739 2785 dbSNP
rs1044131347 2789 dbSNP
rs1214226842 2791 dbSNP
rs1273947579 2791 dbSNP
rs188239541 2795 dbSNP
rs1201529034 2804 dbSNP
rs961006736 2808 dbSNP
rs1461719443 2813 dbSNP
rs1185308003 2828 dbSNP
rs1245695257 2838 dbSNP
rs1383831267 2839 dbSNP
rs1035640314 2843 dbSNP
rs374204301 2845 dbSNP
rs554995569 2846 dbSNP
rs371041148 2847 dbSNP
rs67390379 2850 dbSNP
rs764644807 2850 dbSNP
rs1174747088 2851 dbSNP
rs202026776 2852 dbSNP
rs1038454813 2853 dbSNP
rs1052762492 2862 dbSNP
rs1339211210 2864 dbSNP
rs1324809794 2868 dbSNP
rs867092453 2870 dbSNP
rs143317123 2874 dbSNP
rs565950003 2930 dbSNP
rs1163640585 2941 dbSNP
rs1417204404 2946 dbSNP
rs1221849015 2949 dbSNP
rs59371047 2964 dbSNP
rs922552410 2965 dbSNP
rs1323935051 2971 dbSNP
rs1415008342 2980 dbSNP
rs752756872 2992 dbSNP
rs1445988124 3008 dbSNP
rs76500568 3022 dbSNP
rs1051467599 3031 dbSNP
rs868451712 3037 dbSNP
rs1040020260 3042 dbSNP
rs932469202 3042 dbSNP
rs754607302 3043 dbSNP
rs533371339 3044 dbSNP
rs1429053667 3046 dbSNP
rs973917304 3055 dbSNP
rs962763466 3059 dbSNP
rs925590068 3062 dbSNP
rs1319076922 3073 dbSNP
rs978535677 3078 dbSNP
rs967132495 3080 dbSNP
rs1282863441 3086 dbSNP
rs559725319 3092 dbSNP
rs1345960608 3098 dbSNP
rs908664242 3106 dbSNP
rs1225114240 3112 dbSNP
rs1448372824 3115 dbSNP
rs912962310 3116 dbSNP
rs748921049 3121 dbSNP
rs1285785137 3128 dbSNP
rs1359597905 3132 dbSNP
rs1489610245 3136 dbSNP
rs540646581 3152 dbSNP
rs757572999 3163 dbSNP
rs538588641 3170 dbSNP
rs1035310886 3183 dbSNP
rs1035248490 3184 dbSNP
rs1002875338 3192 dbSNP
rs1201440830 3196 dbSNP
rs541599033 3201 dbSNP
rs1392966336 3202 dbSNP
rs1271157004 3207 dbSNP
rs969542016 3212 dbSNP
rs1002865418 3216 dbSNP
rs1433079177 3225 dbSNP
rs1329600286 3226 dbSNP
rs1382304354 3227 dbSNP
rs1302577830 3234 dbSNP
rs1302849084 3236 dbSNP
rs1366416847 3238 dbSNP
rs1406934616 3239 dbSNP
rs752015806 3243 dbSNP
rs969446195 3244 dbSNP
rs1022468977 3246 dbSNP
rs1334908187 3261 dbSNP
rs1005487653 3265 dbSNP
rs887197320 3278 dbSNP
rs1047102505 3291 dbSNP
rs185196260 3297 dbSNP
rs892877427 3298 dbSNP
rs149613933 3300 dbSNP
rs1248896261 3303 dbSNP
rs998505065 3307 dbSNP
rs1183220499 3308 dbSNP
rs1240571284 3314 dbSNP
rs890794805 3315 dbSNP
rs191807139 3320 dbSNP
rs376358715 3321 dbSNP
rs778419003 3328 dbSNP
rs1244597871 3329 dbSNP
rs899797560 3330 dbSNP
rs1042762672 3340 dbSNP
rs560827742 3341 dbSNP
rs759011867 3359 dbSNP
rs1380471142 3360 dbSNP
rs1490369512 3368 dbSNP
rs912991849 3386 dbSNP
rs992567446 3390 dbSNP
rs548523820 3391 dbSNP
rs527312234 3392 dbSNP
rs559584336 3395 dbSNP
rs1274107470 3403 dbSNP
rs1260335261 3406 dbSNP
rs1460376691 3417 dbSNP
rs373104624 3419 dbSNP
rs908611773 3420 dbSNP
rs983283414 3421 dbSNP
rs1191353776 3424 dbSNP
rs1372714736 3427 dbSNP
rs1462355726 3429 dbSNP
rs939331152 3430 dbSNP
rs35757332 3431 dbSNP
rs1343359440 3432 dbSNP
rs927955514 3435 dbSNP
rs1337251741 3436 dbSNP
rs752801757 3437 dbSNP
rs980832769 3438 dbSNP
rs765428937 3439 dbSNP
rs1347404698 3441 dbSNP
rs1326674901 3449 dbSNP
rs969620471 3458 dbSNP
rs1439883768 3460 dbSNP
rs1022582655 3473 dbSNP
rs541310910 3481 dbSNP
rs138621134 3484 dbSNP
rs192969877 3488 dbSNP
rs1411419327 3498 dbSNP
rs951376848 3517 dbSNP
rs1427024760 3523 dbSNP
rs574294052 3524 dbSNP
rs999014776 3525 dbSNP
rs186969611 3534 dbSNP
rs1430713828 3536 dbSNP
rs1175009030 3553 dbSNP
rs1360818616 3561 dbSNP
rs1480566431 3567 dbSNP
rs1287789768 3595 dbSNP
rs576444094 3599 dbSNP
rs879745696 3600 dbSNP
rs1280948357 3604 dbSNP
rs899743386 3607 dbSNP
rs1344068715 3609 dbSNP
rs555120343 3628 dbSNP
rs1006700143 3636 dbSNP
rs1441033484 3637 dbSNP
rs941167192 3650 dbSNP
rs1260247967 3651 dbSNP
rs886949139 3656 dbSNP
rs1047101197 3667 dbSNP
rs945727026 3674 dbSNP
rs1286480585 3675 dbSNP
rs759588357 3695 dbSNP
rs1199902499 3697 dbSNP
rs368220326 3698 dbSNP
rs1417276132 3700 dbSNP
rs981166562 3706 dbSNP
rs1158227245 3721 dbSNP
rs1363926971 3735 dbSNP
rs536613663 3736 dbSNP
rs1374196758 3737 dbSNP
rs1420954752 3744 dbSNP
rs1300979545 3759 dbSNP
rs938445111 3762 dbSNP
rs1280062886 3766 dbSNP
rs927041268 3769 dbSNP
rs1370126687 3771 dbSNP
rs1444365742 3782 dbSNP
rs182695805 3788 dbSNP
rs1306883376 3791 dbSNP
rs1403557625 3796 dbSNP
rs981352258 3797 dbSNP
rs1242394247 3800 dbSNP
rs1289616804 3818 dbSNP
rs948214642 3820 dbSNP
rs1223456043 3821 dbSNP
rs1248266871 3842 dbSNP
rs1479524495 3843 dbSNP
rs554234042 3845 dbSNP
rs1176591595 3852 dbSNP
rs577986519 3852 dbSNP
rs572104780 3854 dbSNP
rs910168707 3856 dbSNP
rs1469963017 3857 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HEK293S
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in GSM1084064. RNA binding protein: AGO2. Condition:CLIP_noemetine_AbnovaAb HITS-CLIP data was present in GSM1084065. RNA binding protein: AGO2. Condition:CLIP_emetine_AbnovaAb HITS-CLIP data was present in GSM1084069. RNA binding protein: AGO2. Condition:CLIP_emetine_SigmaAb HITS-CLIP data was present in GSM1084078. RNA binding protein: AGO2. Condition:CLIP_nohippuristanol_rep2_AbnovaAb ...

- Karginov FV; Hannon GJ, 2013, Genes & development.

Article - Karginov FV; Hannon GJ
- Genes & development, 2013
When adapting to environmental stress, cells attenuate and reprogram their translational output. In part, these altered translation profiles are established through changes in the interactions between RNA-binding proteins and mRNAs. The Argonaute 2 (Ago2)/microRNA (miRNA) machinery has been shown to participate in stress-induced translational up-regulation of a particular mRNA, CAT-1; however, a detailed, transcriptome-wide understanding of the involvement of Ago2 in the process has been lacking. Here, we profiled the overall changes in Ago2-mRNA interactions upon arsenite stress by cross-linking immunoprecipitation (CLIP) followed by high-throughput sequencing (CLIP-seq). Ago2 displayed a significant remodeling of its transcript occupancy, with the majority of 3' untranslated region (UTR) and coding sequence (CDS) sites exhibiting stronger interaction. Interestingly, target sites that were destined for release from Ago2 upon stress were depleted in miRNA complementarity signatures, suggesting an alternative mode of interaction. To compare the changes in Ago2-binding patterns across transcripts with changes in their translational states, we measured mRNA profiles on ribosome/polysome gradients by RNA sequencing (RNA-seq). Increased Ago2 occupancy correlated with stronger repression of translation for those mRNAs, as evidenced by a shift toward lighter gradient fractions upon stress, while release of Ago2 was associated with the limited number of transcripts that remained translated. Taken together, these data point to a role for Ago2 and the mammalian miRNAs in mediating the translational component of the stress response.
LinkOut: [PMID: 23824327]
CLIP-seq Support 1 for dataset GSM1084064
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_noemetine_AbnovaAb
Location of target site ENST00000454319.1 | 3UTR | UGCAGGAGGUGGAGGUUGCAGUGAGC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM1084065
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_emetine_AbnovaAb
Location of target site ENST00000454319.1 | 3UTR | AUGCAGGAGGUGGAGGUUGCAGUGAGCC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
CLIP-seq Support 3 for dataset GSM1084069
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_emetine_SigmaAb
Location of target site ENST00000454319.1 | 3UTR | GCAGGAGGUGGAGGUUGC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
CLIP-seq Support 4 for dataset GSM1084078
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_nohippuristanol_rep2_AbnovaAb
Location of target site ENST00000454319.1 | 3UTR | AUGCAGGAGGUGGAGGU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
184 hsa-miR-1306-5p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT089458 TET3 tet methylcytosine dioxygenase 3 2 2
MIRT167143 LHFPL2 LHFPL tetraspan subfamily member 2 2 2
MIRT290873 BCL10 B-cell CLL/lymphoma 10 2 2
MIRT320237 CYCS cytochrome c, somatic 2 2
MIRT462980 ZNF784 zinc finger protein 784 2 2
MIRT478039 DNAJC10 DnaJ heat shock protein family (Hsp40) member C10 2 2
MIRT479102 CNNM4 cyclin and CBS domain divalent metal cation transport mediator 4 2 4
MIRT482763 TMEM126B transmembrane protein 126B 2 2
MIRT489972 MCC mutated in colorectal cancers 2 4
MIRT495484 TNFAIP2 TNF alpha induced protein 2 2 2
MIRT496148 GPS1 G protein pathway suppressor 1 2 2
MIRT523370 GSR glutathione-disulfide reductase 2 2
MIRT526299 SORCS2 sortilin related VPS10 domain containing receptor 2 2 4
MIRT527427 NRL neural retina leucine zipper 2 2
MIRT527860 SMOC1 SPARC related modular calcium binding 1 2 6
MIRT529685 FBXL19 F-box and leucine rich repeat protein 19 2 2
MIRT531526 NOM1 nucleolar protein with MIF4G domain 1 2 2
MIRT532461 PLGRKT plasminogen receptor with a C-terminal lysine 2 2
MIRT532519 KCNN1 potassium calcium-activated channel subfamily N member 1 2 2
MIRT532668 APOBEC3D apolipoprotein B mRNA editing enzyme catalytic subunit 3D 2 2
MIRT532718 SNRPD3 small nuclear ribonucleoprotein D3 polypeptide 2 2
MIRT533205 WAPAL WAPL cohesin release factor 2 2
MIRT536480 KIAA1549 KIAA1549 2 2
MIRT537158 GID8 GID complex subunit 8 homolog 2 2
MIRT539307 AKIRIN1 akirin 1 2 2
MIRT539569 CNKSR3 CNKSR family member 3 2 4
MIRT540045 DNAJC28 DnaJ heat shock protein family (Hsp40) member C28 2 4
MIRT540235 SAMD5 sterile alpha motif domain containing 5 2 2
MIRT543016 CRK CRK proto-oncogene, adaptor protein 2 2
MIRT551436 F2 coagulation factor II, thrombin 2 2
MIRT556146 MED12L mediator complex subunit 12 like 2 2
MIRT570714 DGKE diacylglycerol kinase epsilon 2 2
MIRT572037 GRWD1 glutamate rich WD repeat containing 1 2 2
MIRT572409 MRPS14 mitochondrial ribosomal protein S14 2 2
MIRT572660 AGMAT agmatinase 2 4
MIRT611450 NRIP3 nuclear receptor interacting protein 3 2 2
MIRT611601 JAKMIP3 Janus kinase and microtubule interacting protein 3 2 4
MIRT612208 TMEM109 transmembrane protein 109 2 2
MIRT612312 VSIG10 V-set and immunoglobulin domain containing 10 2 2
MIRT614146 MAFK MAF bZIP transcription factor K 2 2
MIRT617371 C21orf62 chromosome 21 open reading frame 62 2 2
MIRT617689 MAPKBP1 mitogen-activated protein kinase binding protein 1 2 2
MIRT618495 DENND5B DENN domain containing 5B 2 4
MIRT618802 SPATA21 spermatogenesis associated 21 2 2
MIRT619061 TTC4 tetratricopeptide repeat domain 4 2 2
MIRT619902 NPTXR neuronal pentraxin receptor 2 2
MIRT620080 DZIP1L DAZ interacting zinc finger protein 1 like 2 2
MIRT622233 SLC25A45 solute carrier family 25 member 45 2 2
MIRT625262 ZNF566 zinc finger protein 566 2 2
MIRT625725 CXorf38 chromosome X open reading frame 38 2 2
MIRT625813 POFUT1 protein O-fucosyltransferase 1 2 2
MIRT625839 NXPE2 neurexophilin and PC-esterase domain family member 2 2 2
MIRT626024 XRCC2 X-ray repair cross complementing 2 2 2
MIRT626054 PDE4C phosphodiesterase 4C 2 2
MIRT626082 CWF19L1 CWF19 like 1, cell cycle control (S. pombe) 2 2
MIRT626356 PACS1 phosphofurin acidic cluster sorting protein 1 2 2
MIRT626790 KCNK6 potassium two pore domain channel subfamily K member 6 2 2
MIRT627797 RAB11FIP1 RAB11 family interacting protein 1 2 2
MIRT628234 FAM212B family with sequence similarity 212 member B 2 2
MIRT628241 FADS1 fatty acid desaturase 1 2 2
MIRT628249 ETF1 eukaryotic translation termination factor 1 2 2
MIRT628799 A2ML1 alpha-2-macroglobulin like 1 2 2
MIRT628879 FAM177A1 family with sequence similarity 177 member A1 2 4
MIRT629333 ZNF487P zinc finger protein 487 1 1
MIRT629435 RPL34 ribosomal protein L34 2 2
MIRT629977 MRPL36 mitochondrial ribosomal protein L36 2 2
MIRT630727 FPR1 formyl peptide receptor 1 2 2
MIRT630776 MSANTD3 Myb/SANT DNA binding domain containing 3 2 2
MIRT631074 ZNF829 zinc finger protein 829 2 2
MIRT633139 C6orf132 chromosome 6 open reading frame 132 2 2
MIRT633178 AGO3 argonaute 3, RISC catalytic component 2 2
MIRT633510 RNF14 ring finger protein 14 2 2
MIRT633613 APCDD1 APC down-regulated 1 2 2
MIRT633668 MYO1F myosin IF 2 2
MIRT633707 LRRC8B leucine rich repeat containing 8 VRAC subunit B 2 2
MIRT633798 SOX7 SRY-box 7 2 2
MIRT634203 TMOD2 tropomodulin 2 2 4
MIRT634297 SUGT1 SGT1 homolog, MIS12 kinetochore complex assembly cochaperone 2 2
MIRT634509 NYAP2 neuronal tyrosine-phosphorylated phosphoinositide-3-kinase adaptor 2 2 2
MIRT634518 NKAP NFKB activating protein 2 2
MIRT634754 CRCP CGRP receptor component 2 2
MIRT635741 IFNAR1 interferon alpha and beta receptor subunit 1 2 2
MIRT636480 KLHL7 kelch like family member 7 2 2
MIRT637042 FITM2 fat storage inducing transmembrane protein 2 2 2
MIRT637748 POLR3K RNA polymerase III subunit K 2 2
MIRT638568 IFNE interferon epsilon 2 2
MIRT639155 TMEM167A transmembrane protein 167A 2 2
MIRT639848 ZBTB20 zinc finger and BTB domain containing 20 2 2
MIRT641770 ZNF207 zinc finger protein 207 2 2
MIRT642285 ZNF99 zinc finger protein 99 2 2
MIRT642685 KRT74 keratin 74 2 2
MIRT643530 ERAP2 endoplasmic reticulum aminopeptidase 2 2 2
MIRT643742 ZNF284 zinc finger protein 284 2 4
MIRT643945 WIPF3 WAS/WASL interacting protein family member 3 2 2
MIRT644320 NFKBID NFKB inhibitor delta 2 2
MIRT644383 ZNF286A zinc finger protein 286A 2 2
MIRT645130 HES2 hes family bHLH transcription factor 2 2 2
MIRT645607 PCDH11X protocadherin 11 X-linked 2 2
MIRT647121 ZNF446 zinc finger protein 446 2 2
MIRT648484 CMBL carboxymethylenebutenolidase homolog 2 2
MIRT648549 BBS5 Bardet-Biedl syndrome 5 2 2
MIRT649252 TRIM65 tripartite motif containing 65 2 2
MIRT649468 SLC10A7 solute carrier family 10 member 7 2 2
MIRT650013 KLB klotho beta 2 2
MIRT650068 CCDC134 coiled-coil domain containing 134 2 2
MIRT650325 RTN2 reticulon 2 2 2
MIRT651093 ZNF516 zinc finger protein 516 2 2
MIRT651265 ZKSCAN4 zinc finger with KRAB and SCAN domains 4 2 2
MIRT651272 ZKSCAN1 zinc finger with KRAB and SCAN domains 1 2 2
MIRT651402 ZBTB16 zinc finger and BTB domain containing 16 2 2
MIRT652163 TRIM66 tripartite motif containing 66 2 2
MIRT653153 SRGAP1 SLIT-ROBO Rho GTPase activating protein 1 2 2
MIRT653477 SLC4A1 solute carrier family 4 member 1 (Diego blood group) 2 2
MIRT653922 SERPINC1 serpin family C member 1 2 2
MIRT654243 RNF115 ring finger protein 115 2 2
MIRT655354 PCDH11Y protocadherin 11 Y-linked 2 2
MIRT655958 NDST1 N-deacetylase and N-sulfotransferase 1 2 2
MIRT656318 MESDC1 talin rod domain containing 1 2 2
MIRT656578 LSM10 LSM10, U7 small nuclear RNA associated 2 2
MIRT657210 IKZF2 IKAROS family zinc finger 2 2 2
MIRT657856 GJB1 gap junction protein beta 1 2 2
MIRT658207 FBXO44 F-box protein 44 2 2
MIRT659003 DIAPH1 diaphanous related formin 1 2 2
MIRT659349 CSRP1 cysteine and glycine rich protein 1 2 2
MIRT659501 CISD3 CDGSH iron sulfur domain 3 2 2
MIRT659761 CCDC171 coiled-coil domain containing 171 2 2
MIRT660149 BRD4 bromodomain containing 4 2 2
MIRT661582 EPHX2 epoxide hydrolase 2 2 2
MIRT661753 ATM ATM serine/threonine kinase 2 2
MIRT662223 CCRL2 C-C motif chemokine receptor like 2 2 2
MIRT663883 CXorf56 chromosome X open reading frame 56 2 2
MIRT664308 HINT1 histidine triad nucleotide binding protein 1 2 2
MIRT664649 GALM galactose mutarotase 2 2
MIRT664671 L2HGDH L-2-hydroxyglutarate dehydrogenase 2 2
MIRT665050 C3 complement C3 2 2
MIRT666467 SCRG1 stimulator of chondrogenesis 1 2 2
MIRT666529 RNF170 ring finger protein 170 2 2
MIRT669118 CDC42BPG CDC42 binding protein kinase gamma 2 2
MIRT669311 C17orf75 chromosome 17 open reading frame 75 2 2
MIRT669358 BHLHE22 basic helix-loop-helix family member e22 2 2
MIRT669691 ABLIM1 actin binding LIM protein 1 2 2
MIRT674223 FAM120AOS family with sequence similarity 120A opposite strand 2 2
MIRT674766 QRSL1 glutaminyl-tRNA synthase (glutamine-hydrolyzing)-like 1 2 2
MIRT675207 ZNF554 zinc finger protein 554 2 2
MIRT675271 ZNF431 zinc finger protein 431 2 2
MIRT676265 PBOV1 prostate and breast cancer overexpressed 1 2 2
MIRT676573 VSIG1 V-set and immunoglobulin domain containing 1 2 2
MIRT677566 C19orf52 translocase of inner mitochondrial membrane 29 2 2
MIRT677631 ALG1 ALG1, chitobiosyldiphosphodolichol beta-mannosyltransferase 2 2
MIRT678115 MICA MHC class I polypeptide-related sequence A 2 2
MIRT678694 RNF157 ring finger protein 157 2 2
MIRT679583 UGGT1 UDP-glucose glycoprotein glucosyltransferase 1 2 2
MIRT679621 MED28 mediator complex subunit 28 2 2
MIRT683700 LAX1 lymphocyte transmembrane adaptor 1 2 2
MIRT683721 LACTB lactamase beta 2 2
MIRT690967 APOL1 apolipoprotein L1 2 2
MIRT691611 IPP intracisternal A particle-promoted polypeptide 2 2
MIRT702524 KCND3 potassium voltage-gated channel subfamily D member 3 2 2
MIRT704762 CDKN2AIPNL CDKN2A interacting protein N-terminal like 2 2
MIRT708738 FAM71F2 family with sequence similarity 71 member F2 2 2
MIRT708898 SKIDA1 SKI/DACH domain containing 1 2 2
MIRT709965 TRUB2 TruB pseudouridine synthase family member 2 2 2
MIRT710373 GM2A GM2 ganglioside activator 2 2
MIRT710533 TMEM201 transmembrane protein 201 2 2
MIRT710582 HLCS holocarboxylase synthetase 2 2
MIRT711030 MBOAT2 membrane bound O-acyltransferase domain containing 2 2 2
MIRT712200 SHROOM4 shroom family member 4 2 2
MIRT713798 CPLX2 complexin 2 2 2
MIRT714096 ZNF486 zinc finger protein 486 2 2
MIRT714923 PPP1R12C protein phosphatase 1 regulatory subunit 12C 2 2
MIRT716518 TNPO2 transportin 2 2 2
MIRT716701 HLA-B major histocompatibility complex, class I, B 2 2
MIRT717070 MTMR6 myotubularin related protein 6 2 2
MIRT719561 CBL Cbl proto-oncogene 2 2
MIRT719688 ALDH1L2 aldehyde dehydrogenase 1 family member L2 2 2
MIRT720134 RIMKLA ribosomal modification protein rimK like family member A 2 2
MIRT720222 IPPK inositol-pentakisphosphate 2-kinase 2 2
MIRT720982 METTL21A methyltransferase like 21A 2 2
MIRT723821 PDS5A PDS5 cohesin associated factor A 2 2
MIRT723999 LMTK2 lemur tyrosine kinase 2 2 2
MIRT724963 PTK6 protein tyrosine kinase 6 2 2
MIRT725217 PEA15 phosphoprotein enriched in astrocytes 15 2 2
MIRT725262 PARVB parvin beta 2 2
MIRT755883 METTL14 methyltransferase like 14 3 1
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-1306 Cisplatin 5460033 NSC119875 approved resistant cell line (A2780)
hsa-mir-1306 Fluorouracil 3385 NSC19893 approved resistant cell line (KYSE)
hsa-miR-1306-5p Imatinib 5291 NSC743414 approved resistant High Chronic Myelogenous Leukemia tissue
hsa-miR-1306-5p Paclitaxel 36314 NSC125973 approved sensitive cell line (HS578T)
hsa-miR-1306-5p Doxorubicin 31703 NSC123127 approved sensitive cell line (HS578T)
hsa-miR-1306-5p Cisplatin 5460033 NSC119875 approved resistant cell line (A549)
hsa-miR-1306-5p Gemcitabine 60750 NSC613327 approved resistant cell line (PANC-1) (1500 ng/ml)

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