pre-miRNA Information
pre-miRNA hsa-mir-1245a   
Genomic Coordinates chr2: 188978092 - 188978161
Description Homo sapiens miR-1245a stem-loop
Comment None
RNA Secondary Structure
Associated Diseases

Mature miRNA Information
Mature miRNA hsa-miR-1245a
Sequence 45| AAGUGAUCUAAAGGCCUACAU |65
Evidence Experimental
Experiments Illumina
DRVs in miRNA
Mutant ID Mutant Position Mutant Source
COSN31562560 15 COSMIC
COSN26581044 19 COSMIC
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs906938680 2 dbSNP
rs1159117523 3 dbSNP
rs780486044 6 dbSNP
rs771479866 17 dbSNP
rs1002976932 18 dbSNP
rs1428029219 19 dbSNP
Putative Targets

Gene Information
Gene Symbol ZNF84   
Synonyms HPF2
Description zinc finger protein 84
Transcript NM_001127372   
Other Transcripts NM_003428   
Expression
Putative miRNA Targets on ZNF84
3'UTR of ZNF84
(miRNA target sites are highlighted)
>ZNF84|NM_001127372|3'UTR
   1 GAATACAGTTAATAGTAGTCTTTGACAGATCATCTTGGACTTCAGGAAATGCAATTATGATAACGTTTGTAGACAGTCAC
  81 GTCATGTTAGGTGTCTGTACTCCATGAGGATGAGAACTCTAAATGAGGTGGTGTATGGAAAGCCGATCATAATTCATAGA
 161 GTAGAGTGAACCTATGACTGCAGTGGATCTCAAAAACTTTTAAAACCATAGACAAGCCTTATAGAGTAGAACATTCACAG
 241 CAAAGAAGAATCCTGTGAATGTCCAAAAGCCTTCCAGAAGTCAAGTCTCTTAAGCTATTAGAAATATTCCCACTGGGGAT
 321 GAGGGAAAACCCCATGAATGCGGGAAATGAGGCAATATTTTTAAGAAATGACAGTTCATTGTACATAAGAAAATGCTCTT
 401 AGGAATGAAGTTCTATGAAAGTACTAAATATGGGACAGTGCAACAAGTAACCAGACTATTTTGTATTTTGGAGAATTCAT
 481 ATTATGGAGAACCTAACAATTTAAAGACACTGGGAACACTTGCCCCTCAGTATAGTACTGTCAAGGGAAGCCATACACTT
 561 TTTGTAGACATGGGTACCAAAAATACCCAATTCTAAGTGGTTGACAGATGTTCACTTTGAAGTGTGAAGTTTTAAAAATA
 641 CGTGAATAAATTGGTTATTGAAACATCTAAGACATTTCTTAGTGGTATTTGTGGCTTATCTTCTAGTGTCACGTATGTTT
 721 TGTGTTTTGGACTTACCTATAATTTAATGTAATTGGGAGTATGAAATGCATATGCCTTTTAGTGCCTCTGATGTCTGTGA
 801 AGACAACACTACACACCACTGGTTTTTATTTTTTAACAATAATATAAAAAATGGAAACTCATGTAACATGACTACATGAA
 881 TAAGTACCTTAAGTGATAACCCGTTTCTTTTAACTTATAGACATACATAAGGGGTCTTTTGTTTTTATGGACCTTTCTAT
 961 TCAGTAACTGAAGCCAACATTGTGTAAGTCTTCTGCATCCTCAGAGTCTGAGTAACAGTTTATATAAAATAAATATGCAA
1041 AGGCAGGAACCACAGAATAACCATAGTAATATATAACTGAATGAGCAAAATAAAGGTGTGTGAACTACATTACAACACCC
1121 AAACTAAATGAAATAAAGTAGTGCTGTATTAAATCTTTTTCTCATTTAGTGAGGTGCCTCCATATAGTATATATATATGT
1201 ATCTTAAGTGATATGTAACCCAAATGTCACTATTTTAATTTACTGTGATAAAGTATCATGGATATTTTGTGCTGCTGTTA
1281 TGCTTTTTGTGTTGCATAAAATATCTTGTAAAAATTAGATGGATAAATGAATTATTAAAAAATCACATTTCTGAAGATGT
1361 AAAGTATTAGGGAATTTTGTGCTGGAAAAACATTTTTGACATTCAAGGATGCCTATTTTATCTTCTAGCAAATTTCTGTG
1441 GTCCCTGGAAAAGTACAGATGATCCTGGACTTACAGTGGGGTTACCTCCCAATAAACCCATTGTAAGTTGAAAACATTGT
1521 AAGTCAAAAATGCATTTAATACACCCAACTTACCAAACATCATAGCTTAGCGTAGCCTACCTTAAACATTCTCAGAACAC
1601 ATTCTAATGCATCATCTATTTTATAAAAAGGTGTTGAATATCTGATGTAATTATTGAATACTGAAGGTGAAAAATAGTAG
1681 TGTATGGATACCATTGTAATGTTGAGAAACTGTAAGTCACATCCTCTTAAGTCAGGAACTATCTGTATAAGGAAACAAGA
1761 TTTCCATTTTATCATTTGAAATGTATTTGACTTTGTTTCACTAGTTGCATTATCCCCATGGAAAACTTCACATTGAGAAC
1841 TTACCATTATATATTTCCATAAAAATGCATGAACCATCCCTTAGCTAAGTAAGGATTTTGTAATGTTCTCTCAATAATGT
1921 TGCTTGGCAAAGTTAATATTTTTTGTATGCTGATGAAATTTAGAAAAGTCCAATATTGAGCTTGATTGCAAACTTAGAAA
2001 AACTCAAGACTTCTCCTTTTATGTTCAAATTGTTGTATCAGTATGGTATTTTGCACCTTTACCTTAAACAATATTTTCTC
2081 CTTTAATTATTGATTTTGCAACATTTTGGGAAAGTTGGAATTTTAAATAAATGAATAATTTTCTAAACCAGAATACCAGT
2161 TCAACAGCCAAATAATTCTGTCTTTCCATGCTGTAATTTTAAAGCATTTAATTTTCCAACTTTTTGTTCATACTCAAGTG
2241 TATGAACTTCCTGGCTGGGCACAGTGGCTCATGCCTGTAATCCCAGCACTTTGGGAGGCTGAGGACCTCAAGTGGAGACC
2321 TCAAGTGGATCACTTGAGGTCAGGAGTTGAAGACCAGCATGTTCATGGCCAACATGGCAAAACCCTGTCTTAAATTAGCC
2401 GGGCATGGTTGTGCGTGCCTGTAATCCCAGTTACTCAGGAGGCTGAGGCAGGAGAATCACTTGAACCTGAGAGGCAGAGG
2481 TTGCAGTGAGCCAAGATTGTGCAGCCTGGGCGACAGAGCGAGCCTCTGTCAAAAAAAGAAAAGAAAAAGAACTTCCTACT
2561 TTTTAATATCTCAAATTCATTTTACTAGACGTGGGAGACCAACTAATGCAAATGAACAGTTACAGGGTGATGTTGTACTT
2641 TGTGATTTTTGCCCTATTTTTTCTTTCCATCTATCACCATTCTCTTTCCAATCCCAGAGATTGATTTATTAGGTCTTGGA
2721 AATTCTAGATTATTCCATTAACTATTAAGCAGTTAAACCTGATACTTCCTACACTAGATAATGGAACTTCAACATTAGCC
2801 TATTGATTGCCCAAGAACAAACATTTTTTTCTAAATGTCAGGTGTTATGGGGAGGATTGATGCTGACAGCAGAGGTCTAG
2881 TTAAAAACTGATGCAGAGGTTCAAATACGTTGTGCAGTAATCACTAGAACTCACCTTCTAAAGTGTCATGAGAGCTCTGA
2961 TTCTGCAATTAGAGATTTTTTAATGTGTTTTTGAAATTACCTTGTAAACCACAAATCTGTGTCTCTGCATTGCCCCTTAT
3041 TGTTTCCTACCACAAATTCTACATCAAGAAGAAAGTTTTAAAGTTAGACTGGATTTATTTGTGATTTTATGGAGCACAAT
3121 AAGGTACATTGAGATAGCATACTAAAGGAGGCCAAATACAGGAAGCATCATCTTTTCTTATTCTCTTACTGCCTGGATTT
3201 TCCCACTGACCTGGAATTGTGCACAGTTCTACAAAGGACAATTGACATTGTTTTCCTTTTACTAAGTAGTGGGTTTTCCT
3281 TAAGGTCCAGACTGAATTTTGAGACCTGTATCAGGATTGCCTTCTGTGTGACTTTTTCTTGCAGGATCTGACATCATTAC
3361 CTATGGGTCCATATATTTGTGATACTTTGGTTTCGGGAACATCACTTTTAGAATGTTGACATAAAATGCACCCACAGAAT
3441 GCCGTATTTATCAAAAGTAACTTTCTAGCAAAATCTACAGCAGTAGGCATTTGGAATCTGCATTTGAGACCTCTGCAGTC
3521 ATTTGGTCATTCCAGCAATCTATGTCCAGGTTGTCAATTTCAGAGGTCTTATTAGTCTATACAGGTACCAATGAGCTTTC
3601 AGATGTTCAACACCTACCCCTGGCCTAACTGCTGATAACCAACCATAACCCTTGCAGATGCATGCATGTTTTCTGCACCT
3681 TGCTATCATTTTTCAGTCCATTTTTCACATGTATACATAGTGATTATTTTTAAATGCAACCCTGATTTCACATGCCTCAT
3761 GTTGAAATATCGTGTGGCTTATTGTGGACTTAAAGTGTAACATTCTCCTTATGGTATGTAAGGACTTTTGTATAAACCAA
3841 TGCCTATCTATCTATCATTTCTGAAAACTTTTTCCTCCTATGCAATATTTTCTGGCCTCTGTGAACAACTTGTAGTTCCT
3921 TGAGATTTCTATTATCACTTATGTTTTTGCAAATCTGCAATTGAAATGCCCTTGTTCCTTGTTAATGCCTATTGAATCTA
4001 TATGAACCTGTACGTGTGTTTCTCACTGTGATAATATAATCATTGCATGTTTTATCTTTCCCACTAGAAAGCTTCTAGAA
4081 AGCTAGTACTATCTTTTTTGTCTGTGTAATTTTTGCATCACAAGCTATATTTAAATGTGGGTGCAGTGAGTGGCTGTTTT
4161 CTGCCACATGGAGAAACATGGTCTGCAGTGAGAGAGAAGAATGAAGCCATGATGAAAGCAAAATCAAGAAAGAGTCCCGA
4241 TTGTGTTCCAGTACCTGGTTCTTCTGGTCTTCATGTTCAGGTCCACCTCTGCCCTTTTCATGTCTTGATTGTTGAATTCT
4321 TCTGTGAGATACTCCAAATATCCTAATAAATTCTCATGTTTGCTTCATCTGGAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' uaCAUCCGGA---AAUCUAGUGAa 5'
            | || |||    |:||||||| 
Target 5' gtGGAGACCTCAAGTGGATCACTt 3'
2312 - 2335 155.00 -16.00
2
miRNA  3' uaCAUCCGGAAA---UCUAGU-GAa 5'
            ||| |:||||   |||||| || 
Target 5' taGTA-GTCTTTGACAGATCATCTt 3'
13 - 36 134.00 -13.50
3
miRNA  3' uacAUCCGGAA--------AUCUAGUGAa 5'
             ||||:|||        |||||:|:| 
Target 5' tatTAGGTCTTGGAAATTCTAGATTATTc 3'
2707 - 2735 132.00 -13.10
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN15327359 3826 COSMIC
COSN28886492 4053 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1228245923 7 dbSNP
rs1343513633 10 dbSNP
rs1300188173 13 dbSNP
rs1232642694 19 dbSNP
rs1016554821 22 dbSNP
rs1328984804 27 dbSNP
rs1300215322 29 dbSNP
rs1387027634 37 dbSNP
rs1392201097 47 dbSNP
rs1305657950 55 dbSNP
rs1428959512 58 dbSNP
rs1371165137 65 dbSNP
rs763495145 66 dbSNP
rs1452391252 70 dbSNP
rs959325248 72 dbSNP
rs1199800017 73 dbSNP
rs1435149257 77 dbSNP
rs1248435063 79 dbSNP
rs1012612507 81 dbSNP
rs1483665212 82 dbSNP
rs1024807874 85 dbSNP
rs1209139179 89 dbSNP
rs1344705160 92 dbSNP
rs601679 96 dbSNP
rs1233450561 101 dbSNP
rs1332470156 117 dbSNP
rs1285908524 129 dbSNP
rs1408756049 141 dbSNP
rs977799033 145 dbSNP
rs923707709 146 dbSNP
rs957680204 147 dbSNP
rs1401169617 149 dbSNP
rs1172957167 150 dbSNP
rs1467713659 157 dbSNP
rs989165039 160 dbSNP
rs77112710 166 dbSNP
rs942961656 175 dbSNP
rs1041716190 176 dbSNP
rs1186367235 177 dbSNP
rs1442366096 181 dbSNP
rs1279703196 187 dbSNP
rs1243978135 188 dbSNP
rs922778963 195 dbSNP
rs1265913274 201 dbSNP
rs1227208297 202 dbSNP
rs1329188434 208 dbSNP
rs1289700087 209 dbSNP
rs1445652861 211 dbSNP
rs930138965 216 dbSNP
rs1339807027 218 dbSNP
rs1334558573 220 dbSNP
rs1397622194 234 dbSNP
rs1047153919 236 dbSNP
rs1158655797 237 dbSNP
rs1457985825 241 dbSNP
rs866371049 253 dbSNP
rs1161541485 256 dbSNP
rs1472756708 262 dbSNP
rs1238619442 267 dbSNP
rs1005520903 275 dbSNP
rs115840697 282 dbSNP
rs1207655263 286 dbSNP
rs1465076105 287 dbSNP
rs1269404661 288 dbSNP
rs1226183457 290 dbSNP
rs1355539061 301 dbSNP
rs1284759021 306 dbSNP
rs1246676827 316 dbSNP
rs1362707777 322 dbSNP
rs1319661168 324 dbSNP
rs894507698 326 dbSNP
rs1012148094 331 dbSNP
rs1321658877 337 dbSNP
rs1025341272 342 dbSNP
rs970508124 343 dbSNP
rs1165460679 344 dbSNP
rs1448223943 352 dbSNP
rs201971004 353 dbSNP
rs1189618624 354 dbSNP
rs374771042 356 dbSNP
rs1243548196 358 dbSNP
rs1218716165 359 dbSNP
rs1450580871 372 dbSNP
rs1289996706 378 dbSNP
rs1211504759 382 dbSNP
rs1339977867 385 dbSNP
rs957793011 386 dbSNP
rs1367588761 391 dbSNP
rs989672522 394 dbSNP
rs1273333639 400 dbSNP
rs1436060680 414 dbSNP
rs1350496520 416 dbSNP
rs1325627953 418 dbSNP
rs1428312214 424 dbSNP
rs1017920044 432 dbSNP
rs1169610987 435 dbSNP
rs1451776050 437 dbSNP
rs613639 453 dbSNP
rs1246714375 457 dbSNP
rs1477499453 457 dbSNP
rs1201039606 459 dbSNP
rs1482023554 461 dbSNP
rs1273887961 465 dbSNP
rs1205567304 474 dbSNP
rs976999733 475 dbSNP
rs922866617 480 dbSNP
rs1218814501 486 dbSNP
rs930089746 487 dbSNP
rs1276687438 494 dbSNP
rs1408144016 497 dbSNP
rs1350388369 503 dbSNP
rs982955796 508 dbSNP
rs1309214493 509 dbSNP
rs910084063 510 dbSNP
rs111383864 519 dbSNP
rs1175803346 524 dbSNP
rs1413549455 533 dbSNP
rs1425497950 537 dbSNP
rs941424365 538 dbSNP
rs1056306899 545 dbSNP
rs894463116 558 dbSNP
rs1250461716 559 dbSNP
rs1182747776 567 dbSNP
rs1481585761 570 dbSNP
rs1235458817 574 dbSNP
rs1209248776 579 dbSNP
rs950108131 598 dbSNP
rs1046290238 604 dbSNP
rs1265288604 608 dbSNP
rs906464817 609 dbSNP
rs1289092473 614 dbSNP
rs1412148756 615 dbSNP
rs755131987 625 dbSNP
rs1302621186 631 dbSNP
rs1449276175 634 dbSNP
rs1359345762 636 dbSNP
rs999282724 643 dbSNP
rs541231908 644 dbSNP
rs1455333524 647 dbSNP
rs1410512459 652 dbSNP
rs1159268791 665 dbSNP
rs1420805502 676 dbSNP
rs1411613584 679 dbSNP
rs1181048917 682 dbSNP
rs1483478432 690 dbSNP
rs1244779841 695 dbSNP
rs1207004703 700 dbSNP
rs1030785687 701 dbSNP
rs1464617517 704 dbSNP
rs1268844833 706 dbSNP
rs893661959 708 dbSNP
rs1312682214 712 dbSNP
rs1320421015 712 dbSNP
rs1010640817 713 dbSNP
rs372303552 714 dbSNP
rs1318974083 716 dbSNP
rs1432362140 731 dbSNP
rs1387543167 732 dbSNP
rs1018451742 737 dbSNP
rs963721087 739 dbSNP
rs1366616495 748 dbSNP
rs976826886 753 dbSNP
rs1424352864 754 dbSNP
rs1029885147 763 dbSNP
rs1186513479 770 dbSNP
rs1449075996 771 dbSNP
rs1248933142 780 dbSNP
rs781271620 781 dbSNP
rs1206938347 782 dbSNP
rs1487522484 789 dbSNP
rs951600344 805 dbSNP
rs1222872980 806 dbSNP
rs983071986 807 dbSNP
rs1295858803 810 dbSNP
rs1228209100 816 dbSNP
rs1363986981 822 dbSNP
rs1295901255 831 dbSNP
rs73423900 841 dbSNP
rs1387891312 846 dbSNP
rs941554142 847 dbSNP
rs1458343049 871 dbSNP
rs1367436534 872 dbSNP
rs1166458210 875 dbSNP
rs1390589692 877 dbSNP
rs1428914172 877 dbSNP
rs1241567993 894 dbSNP
rs1266675221 900 dbSNP
rs1191917058 902 dbSNP
rs991560910 903 dbSNP
rs1273172173 904 dbSNP
rs1204852525 917 dbSNP
rs371417632 919 dbSNP
rs1253474319 921 dbSNP
rs1229086408 924 dbSNP
rs1329002265 927 dbSNP
rs1299972064 928 dbSNP
rs1347286576 932 dbSNP
rs1306063311 934 dbSNP
rs1429051635 935 dbSNP
rs950043412 937 dbSNP
rs1169429728 941 dbSNP
rs1464731762 942 dbSNP
rs1377345827 949 dbSNP
rs1176855390 953 dbSNP
rs1249756659 959 dbSNP
rs1182030984 960 dbSNP
rs1483675898 969 dbSNP
rs1253018002 976 dbSNP
rs1199155292 983 dbSNP
rs77528007 1011 dbSNP
rs116561687 1016 dbSNP
rs935229487 1017 dbSNP
rs1052328612 1022 dbSNP
rs1285925350 1026 dbSNP
rs1409064832 1029 dbSNP
rs1336342070 1037 dbSNP
rs1330628048 1045 dbSNP
rs1401733434 1049 dbSNP
rs1337595425 1055 dbSNP
rs893609473 1057 dbSNP
rs1158527612 1060 dbSNP
rs1470797013 1062 dbSNP
rs1366106740 1064 dbSNP
rs1185828751 1065 dbSNP
rs7958575 1073 dbSNP
rs1257328440 1075 dbSNP
rs1203843407 1078 dbSNP
rs1462378920 1081 dbSNP
rs1265686525 1082 dbSNP
rs745768658 1087 dbSNP
rs1351288411 1088 dbSNP
rs1281255879 1091 dbSNP
rs1017983622 1095 dbSNP
rs772200879 1103 dbSNP
rs1242559807 1106 dbSNP
rs372210427 1108 dbSNP
rs1315488348 1109 dbSNP
rs1454720690 1115 dbSNP
rs1386814031 1118 dbSNP
rs1319945991 1128 dbSNP
rs1401399583 1134 dbSNP
rs1387273016 1137 dbSNP
rs1161923666 1143 dbSNP
rs1472763927 1145 dbSNP
rs997979891 1149 dbSNP
rs1029329148 1159 dbSNP
rs1386178234 1163 dbSNP
rs951052180 1164 dbSNP
rs1446066552 1165 dbSNP
rs1004456592 1175 dbSNP
rs1207523440 1180 dbSNP
rs1447039766 1185 dbSNP
rs1207930917 1188 dbSNP
rs1285778141 1188 dbSNP
rs1355565033 1188 dbSNP
rs1315466826 1192 dbSNP
rs1247974094 1196 dbSNP
rs1363251546 1200 dbSNP
rs1297090688 1203 dbSNP
rs1431777845 1213 dbSNP
rs1017211519 1215 dbSNP
rs962887575 1224 dbSNP
rs1366793217 1225 dbSNP
rs992072047 1229 dbSNP
rs1389986594 1231 dbSNP
rs73423901 1236 dbSNP
rs1475545814 1238 dbSNP
rs1243277239 1241 dbSNP
rs1196218032 1243 dbSNP
rs1490162789 1244 dbSNP
rs971881815 1246 dbSNP
rs1292458871 1251 dbSNP
rs1224669454 1254 dbSNP
rs1339747448 1255 dbSNP
rs1273665276 1256 dbSNP
rs1215314368 1263 dbSNP
rs1341808755 1274 dbSNP
rs1273137901 1279 dbSNP
rs564740589 1282 dbSNP
rs201611559 1284 dbSNP
rs934673854 1287 dbSNP
rs1408564438 1288 dbSNP
rs1370280176 1289 dbSNP
rs779655279 1290 dbSNP
rs915144367 1305 dbSNP
rs1421284115 1309 dbSNP
rs1170275192 1314 dbSNP
rs946536213 1317 dbSNP
rs1039934944 1318 dbSNP
rs1269001831 1320 dbSNP
rs1201423235 1322 dbSNP
rs899702797 1324 dbSNP
rs1232084071 1330 dbSNP
rs746523996 1332 dbSNP
rs997915967 1333 dbSNP
rs768384581 1335 dbSNP
rs1218898882 1336 dbSNP
rs1324317658 1337 dbSNP
rs1285292365 1339 dbSNP
rs1227025299 1340 dbSNP
rs886745555 1342 dbSNP
rs1003900327 1348 dbSNP
rs1444877901 1357 dbSNP
rs1357817525 1360 dbSNP
rs1017161253 1365 dbSNP
rs1429296451 1370 dbSNP
rs963298266 1399 dbSNP
rs1471559602 1405 dbSNP
rs965203490 1413 dbSNP
rs1407226628 1416 dbSNP
rs1177533503 1418 dbSNP
rs1481471460 1426 dbSNP
rs1013204970 1428 dbSNP
rs1203211871 1431 dbSNP
rs1461946599 1436 dbSNP
rs1265077397 1437 dbSNP
rs1206969241 1448 dbSNP
rs1023554431 1453 dbSNP
rs1308389171 1457 dbSNP
rs1225998302 1459 dbSNP
rs1377353352 1461 dbSNP
rs1283977010 1481 dbSNP
rs971616318 1493 dbSNP
rs1406432703 1498 dbSNP
rs1338097921 1504 dbSNP
rs1455222737 1507 dbSNP
rs1344119848 1512 dbSNP
rs369909606 1516 dbSNP
rs981460541 1519 dbSNP
rs1420824402 1520 dbSNP
rs1411282448 1534 dbSNP
rs1182830970 1535 dbSNP
rs924715839 1543 dbSNP
rs955999742 1549 dbSNP
rs1245255950 1550 dbSNP
rs1206870777 1552 dbSNP
rs990116031 1554 dbSNP
rs1485555883 1558 dbSNP
rs1218475125 1563 dbSNP
rs1261398268 1563 dbSNP
rs1320510372 1564 dbSNP
rs914612224 1569 dbSNP
rs4758904 1572 dbSNP
rs1383024419 1573 dbSNP
rs1380193741 1584 dbSNP
rs1039648008 1587 dbSNP
rs1360596777 1591 dbSNP
rs921084461 1602 dbSNP
rs1288950198 1611 dbSNP
rs1455282705 1612 dbSNP
rs1348114414 1617 dbSNP
rs1162673490 1619 dbSNP
rs933824954 1632 dbSNP
rs1425113263 1634 dbSNP
rs1050809450 1639 dbSNP
rs1386895567 1646 dbSNP
rs1186846039 1649 dbSNP
rs1428145296 1651 dbSNP
rs886861215 1656 dbSNP
rs1188415786 1661 dbSNP
rs1003849598 1668 dbSNP
rs1268845190 1675 dbSNP
rs1223920987 1680 dbSNP
rs1361973551 1688 dbSNP
rs1038437722 1697 dbSNP
rs1224707894 1699 dbSNP
rs1306631503 1702 dbSNP
rs1295658347 1711 dbSNP
rs1383466250 1713 dbSNP
rs1343533075 1714 dbSNP
rs898202735 1721 dbSNP
rs1013569852 1722 dbSNP
rs1023227754 1724 dbSNP
rs907338956 1727 dbSNP
rs1405495183 1733 dbSNP
rs377098633 1734 dbSNP
rs1166554502 1736 dbSNP
rs1461659546 1742 dbSNP
rs1031681546 1743 dbSNP
rs1172578340 1744 dbSNP
rs1431468248 1752 dbSNP
rs1268295187 1757 dbSNP
rs956115958 1759 dbSNP
rs1200712537 1761 dbSNP
rs1490985981 1770 dbSNP
rs761580146 1772 dbSNP
rs1195649753 1782 dbSNP
rs1022025742 1783 dbSNP
rs1480094224 1786 dbSNP
rs1251571065 1788 dbSNP
rs1229196705 1790 dbSNP
rs1320738655 1792 dbSNP
rs964770360 1794 dbSNP
rs1224041715 1795 dbSNP
rs1347381156 1796 dbSNP
rs1326581811 1800 dbSNP
rs1390641529 1808 dbSNP
rs1396981692 1813 dbSNP
rs1300061919 1816 dbSNP
rs1468441338 1831 dbSNP
rs1428606448 1833 dbSNP
rs1177330578 1837 dbSNP
rs367811046 1840 dbSNP
rs1481700177 1855 dbSNP
rs1410467058 1859 dbSNP
rs975707985 1868 dbSNP
rs1253133721 1874 dbSNP
rs1459752674 1877 dbSNP
rs770026455 1881 dbSNP
rs796224228 1888 dbSNP
rs1407886289 1896 dbSNP
rs1325549219 1904 dbSNP
rs986641767 1905 dbSNP
rs1238267044 1912 dbSNP
rs1336065265 1914 dbSNP
rs1308888643 1929 dbSNP
rs1450721281 1934 dbSNP
rs908410809 1937 dbSNP
rs1405705784 1940 dbSNP
rs1337449142 1965 dbSNP
rs1471020492 1966 dbSNP
rs1382922981 1972 dbSNP
rs1158448693 1973 dbSNP
rs1470807777 1974 dbSNP
rs1365906545 1979 dbSNP
rs939752317 1990 dbSNP
rs1185939542 1994 dbSNP
rs533356444 1998 dbSNP
rs1442369202 2000 dbSNP
rs1242190006 2001 dbSNP
rs898124115 2006 dbSNP
rs948429955 2014 dbSNP
rs1045002679 2017 dbSNP
rs1462225975 2022 dbSNP
rs1204409803 2026 dbSNP
rs1351400764 2030 dbSNP
rs1399526306 2036 dbSNP
rs1382275281 2037 dbSNP
rs1454803796 2038 dbSNP
rs1324703955 2041 dbSNP
rs1317802951 2043 dbSNP
rs1401779568 2044 dbSNP
rs200408707 2045 dbSNP
rs1162022462 2049 dbSNP
rs1424373887 2055 dbSNP
rs1386268112 2066 dbSNP
rs1163757981 2069 dbSNP
rs1003111978 2072 dbSNP
rs1239860427 2074 dbSNP
rs1191924590 2082 dbSNP
rs1447494935 2083 dbSNP
rs1263823277 2087 dbSNP
rs1220203948 2091 dbSNP
rs1358403358 2095 dbSNP
rs1031796393 2109 dbSNP
rs1292248000 2118 dbSNP
rs1248364120 2123 dbSNP
rs1337759322 2124 dbSNP
rs1269649441 2144 dbSNP
rs1431625222 2149 dbSNP
rs891987724 2163 dbSNP
rs1301784349 2165 dbSNP
rs1404892397 2168 dbSNP
rs368946821 2173 dbSNP
rs1366511065 2175 dbSNP
rs79149450 2184 dbSNP
rs1406728062 2189 dbSNP
rs1166775512 2190 dbSNP
rs1475433536 2192 dbSNP
rs1425184846 2208 dbSNP
rs1021726027 2212 dbSNP
rs965047838 2217 dbSNP
rs974774361 2223 dbSNP
rs1490168227 2229 dbSNP
rs1269313841 2230 dbSNP
rs1223552142 2232 dbSNP
rs1436257152 2234 dbSNP
rs1272505675 2236 dbSNP
rs1215404982 2238 dbSNP
rs685254 2243 dbSNP
rs1223433347 2247 dbSNP
rs955269004 2248 dbSNP
rs1346761571 2252 dbSNP
rs986756021 2254 dbSNP
rs1440517347 2257 dbSNP
rs1354351757 2263 dbSNP
rs1327715540 2272 dbSNP
rs1410200456 2273 dbSNP
rs908359965 2278 dbSNP
rs1173723104 2282 dbSNP
rs113338384 2292 dbSNP
rs939866769 2293 dbSNP
rs974204368 2303 dbSNP
rs1192878947 2304 dbSNP
rs1480055333 2304 dbSNP
rs1468361034 2306 dbSNP
rs1232105705 2310 dbSNP
rs1205404898 2313 dbSNP
rs1459311196 2315 dbSNP
rs1261319427 2321 dbSNP
rs919685682 2325 dbSNP
rs1324857729 2329 dbSNP
rs1285704451 2332 dbSNP
rs1222584848 2333 dbSNP
rs1372986055 2334 dbSNP
rs1280512947 2336 dbSNP
rs1442480307 2349 dbSNP
rs1378715476 2354 dbSNP
rs582445 2358 dbSNP
rs1044056981 2375 dbSNP
rs1406196269 2376 dbSNP
rs1178070715 2377 dbSNP
rs1406972825 2383 dbSNP
rs1177626651 2385 dbSNP
rs1441756689 2388 dbSNP
rs906916546 2390 dbSNP
rs1183256926 2391 dbSNP
rs1461788827 2394 dbSNP
rs1257851793 2401 dbSNP
rs938917830 2402 dbSNP
rs1316914879 2403 dbSNP
rs1285380333 2406 dbSNP
rs1242815730 2410 dbSNP
rs1053329506 2412 dbSNP
rs766881427 2415 dbSNP
rs1011765519 2416 dbSNP
rs1043495255 2420 dbSNP
rs1382800962 2428 dbSNP
rs1428534719 2429 dbSNP
rs61953746 2436 dbSNP
rs1159526597 2443 dbSNP
rs1421248035 2459 dbSNP
rs996700510 2476 dbSNP
rs1163107976 2488 dbSNP
rs1030336041 2489 dbSNP
rs1258350576 2496 dbSNP
rs1184919816 2510 dbSNP
rs954719035 2512 dbSNP
rs1243155931 2515 dbSNP
rs1008136961 2520 dbSNP
rs1015535638 2521 dbSNP
rs961158948 2525 dbSNP
rs1291509003 2528 dbSNP
rs1244782511 2530 dbSNP
rs1322008193 2531 dbSNP
rs1212334148 2534 dbSNP
rs1314218944 2534 dbSNP
rs1360700938 2536 dbSNP
rs1289327640 2539 dbSNP
rs1363415726 2541 dbSNP
rs7138888 2541 dbSNP
rs1302390827 2548 dbSNP
rs1425525449 2550 dbSNP
rs919786320 2556 dbSNP
rs1370472102 2560 dbSNP
rs969829916 2560 dbSNP
rs1168641552 2565 dbSNP
rs1427941296 2567 dbSNP
rs980281768 2571 dbSNP
rs1196383784 2579 dbSNP
rs1490021714 2580 dbSNP
rs928290526 2581 dbSNP
rs938362954 2586 dbSNP
rs1053276597 2591 dbSNP
rs371195291 2592 dbSNP
rs947509726 2607 dbSNP
rs1043223685 2622 dbSNP
rs900709540 2627 dbSNP
rs996259686 2630 dbSNP
rs1051880239 2631 dbSNP
rs1343629188 2631 dbSNP
rs1282374915 2634 dbSNP
rs1387179181 2641 dbSNP
rs1392640753 2641 dbSNP
rs1296604043 2643 dbSNP
rs1461672735 2654 dbSNP
rs890435429 2657 dbSNP
rs1004888035 2658 dbSNP
rs1479729282 2666 dbSNP
rs1429250640 2667 dbSNP
rs1200821524 2678 dbSNP
rs1435231058 2685 dbSNP
rs1248878793 2692 dbSNP
rs1193651641 2700 dbSNP
rs1480146591 2702 dbSNP
rs1258133356 2703 dbSNP
rs1200039337 2704 dbSNP
rs1321300841 2715 dbSNP
rs1262375586 2726 dbSNP
rs1233893727 2728 dbSNP
rs1332534531 2733 dbSNP
rs1304682360 2735 dbSNP
rs1391024890 2760 dbSNP
rs1377988120 2763 dbSNP
rs1333409196 2764 dbSNP
rs1015483297 2765 dbSNP
rs961309116 2767 dbSNP
rs995867260 2772 dbSNP
rs1173614482 2776 dbSNP
rs1468033701 2779 dbSNP
rs1362418698 2782 dbSNP
rs1181618131 2788 dbSNP
rs1418132788 2789 dbSNP
rs1238452346 2793 dbSNP
rs1180162297 2801 dbSNP
rs1459542350 2804 dbSNP
rs1261969611 2816 dbSNP
rs1200956070 2821 dbSNP
rs1347108557 2824 dbSNP
rs1026800435 2831 dbSNP
rs374657699 2834 dbSNP
rs1354186980 2839 dbSNP
rs1311679482 2848 dbSNP
rs979792429 2849 dbSNP
rs1450744059 2853 dbSNP
rs1335010903 2874 dbSNP
rs928405591 2877 dbSNP
rs959660868 2880 dbSNP
rs1158324627 2894 dbSNP
rs1420652357 2895 dbSNP
rs1382566113 2898 dbSNP
rs1160008686 2900 dbSNP
rs1442463182 2909 dbSNP
rs878924666 2910 dbSNP
rs988443989 2916 dbSNP
rs912934342 2917 dbSNP
rs1187698687 2926 dbSNP
rs1444035783 2930 dbSNP
rs1259523114 2933 dbSNP
rs947662822 2934 dbSNP
rs1204500958 2941 dbSNP
rs1287902554 2967 dbSNP
rs1488462330 2967 dbSNP
rs1244050831 2976 dbSNP
rs1359066702 2979 dbSNP
rs924610468 2985 dbSNP
rs1284835428 2987 dbSNP
rs759639730 2988 dbSNP
rs1324797324 3009 dbSNP
rs922112351 3015 dbSNP
rs144328790 3018 dbSNP
rs376565380 3018 dbSNP
rs1401146564 3033 dbSNP
rs1362840163 3046 dbSNP
rs932157940 3050 dbSNP
rs1051807108 3057 dbSNP
rs1301741524 3060 dbSNP
rs890551166 3067 dbSNP
rs940787864 3070 dbSNP
rs1163512069 3077 dbSNP
rs1473464995 3080 dbSNP
rs1036359874 3090 dbSNP
rs899183465 3092 dbSNP
rs767730292 3094 dbSNP
rs1192770610 3102 dbSNP
rs1478145465 3105 dbSNP
rs199672174 3112 dbSNP
rs905672118 3114 dbSNP
rs1490240008 3116 dbSNP
rs1290814276 3121 dbSNP
rs1001327210 3129 dbSNP
rs1035368935 3135 dbSNP
rs1269740791 3148 dbSNP
rs1219766683 3151 dbSNP
rs1342985752 3161 dbSNP
rs1281736488 3171 dbSNP
rs1404675522 3172 dbSNP
rs959774724 3176 dbSNP
rs1323741825 3182 dbSNP
rs1406744209 3184 dbSNP
rs1393687850 3186 dbSNP
rs1169413238 3188 dbSNP
rs988560550 3189 dbSNP
rs1478095290 3199 dbSNP
rs1425742864 3200 dbSNP
rs1197231158 3204 dbSNP
rs1019932574 3209 dbSNP
rs1477548504 3212 dbSNP
rs1247084621 3222 dbSNP
rs1201271878 3223 dbSNP
rs11147222 3225 dbSNP
rs1257477529 3230 dbSNP
rs1199391154 3234 dbSNP
rs1320132304 3242 dbSNP
rs1261761605 3248 dbSNP
rs1368668340 3251 dbSNP
rs979009940 3251 dbSNP
rs1277042491 3252 dbSNP
rs1438154757 3260 dbSNP
rs922198585 3271 dbSNP
rs1330058819 3272 dbSNP
rs932101925 3284 dbSNP
rs764935243 3305 dbSNP
rs659137 3312 dbSNP
rs1413900982 3320 dbSNP
rs1425587180 3325 dbSNP
rs1174152209 3352 dbSNP
rs1468765736 3359 dbSNP
rs1237755687 3364 dbSNP
rs940735659 3371 dbSNP
rs1036476409 3376 dbSNP
rs1459100280 3387 dbSNP
rs899136473 3389 dbSNP
rs1210026222 3391 dbSNP
rs930656689 3395 dbSNP
rs1048268051 3396 dbSNP
rs1222466147 3400 dbSNP
rs905783598 3414 dbSNP
rs1447083375 3416 dbSNP
rs1001441480 3423 dbSNP
rs1334183770 3430 dbSNP
rs1035486123 3431 dbSNP
rs1359711058 3432 dbSNP
rs1178175850 3435 dbSNP
rs1398687922 3443 dbSNP
rs1379468810 3444 dbSNP
rs895677769 3445 dbSNP
rs1009929587 3447 dbSNP
rs1441849603 3447 dbSNP
rs369515746 3454 dbSNP
rs1181409733 3460 dbSNP
rs112514765 3468 dbSNP
rs1239687270 3474 dbSNP
rs1214307628 3479 dbSNP
rs374290096 3481 dbSNP
rs1287200972 3483 dbSNP
rs1240398849 3488 dbSNP
rs978839458 3492 dbSNP
rs1355465043 3499 dbSNP
rs1309917670 3501 dbSNP
rs1028690239 3503 dbSNP
rs1379289972 3511 dbSNP
rs953606757 3512 dbSNP
rs987744810 3514 dbSNP
rs1359657527 3522 dbSNP
rs1298643456 3524 dbSNP
rs1421729725 3527 dbSNP
rs1363991363 3528 dbSNP
rs1164388307 3543 dbSNP
rs1424425636 3545 dbSNP
rs1416072675 3548 dbSNP
rs912050722 3560 dbSNP
rs1477821057 3569 dbSNP
rs1264316139 3570 dbSNP
rs1219294361 3579 dbSNP
rs116833343 3580 dbSNP
rs1263262953 3581 dbSNP
rs1220390222 3589 dbSNP
rs1321722761 3591 dbSNP
rs972149845 3592 dbSNP
rs1216709227 3594 dbSNP
rs920679368 3611 dbSNP
rs1278574432 3624 dbSNP
rs1401576655 3628 dbSNP
rs1363513350 3629 dbSNP
rs1293103967 3630 dbSNP
rs1458612615 3632 dbSNP
rs1168481900 3659 dbSNP
rs1351685241 3659 dbSNP
rs1465532052 3663 dbSNP
rs796125644 3666 dbSNP
rs930627600 3667 dbSNP
rs1267110940 3668 dbSNP
rs1190267393 3670 dbSNP
rs550476699 3677 dbSNP
rs1488636408 3679 dbSNP
rs1266674969 3686 dbSNP
rs1196252588 3687 dbSNP
rs1316790271 3697 dbSNP
rs1045465735 3698 dbSNP
rs1258579090 3701 dbSNP
rs926684144 3709 dbSNP
rs1220410887 3711 dbSNP
rs1329073681 3712 dbSNP
rs1300417644 3718 dbSNP
rs780172811 3724 dbSNP
rs1370047402 3726 dbSNP
rs1329594510 3750 dbSNP
rs1446061089 3759 dbSNP
rs937242014 3760 dbSNP
rs1377411104 3766 dbSNP
rs1177311897 3771 dbSNP
rs1057007004 3772 dbSNP
rs895626815 3773 dbSNP
rs1176420849 3778 dbSNP
rs1010045597 3784 dbSNP
rs1238259520 3792 dbSNP
rs1200454669 3793 dbSNP
rs1342862638 3796 dbSNP
rs1255159877 3797 dbSNP
rs1233648490 3803 dbSNP
rs1313759117 3813 dbSNP
rs1041430181 3814 dbSNP
rs904261058 3824 dbSNP
rs1446327659 3826 dbSNP
rs1377737930 3829 dbSNP
rs999986171 3830 dbSNP
rs656865 3834 dbSNP
rs879103791 3839 dbSNP
rs113938882 3841 dbSNP
rs1402169947 3843 dbSNP
rs1009123814 3844 dbSNP
rs780799132 3844 dbSNP
rs1467858195 3845 dbSNP
rs747753639 3847 dbSNP
rs1156389602 3848 dbSNP
rs796823553 3851 dbSNP
rs1380366920 3854 dbSNP
rs962165401 3855 dbSNP
rs972649863 3859 dbSNP
rs1255321427 3865 dbSNP
rs1200974187 3878 dbSNP
rs1484072190 3886 dbSNP
rs1283700125 3888 dbSNP
rs1239677647 3895 dbSNP
rs920806814 3899 dbSNP
rs952226363 3902 dbSNP
rs1354748678 3910 dbSNP
rs1311514588 3924 dbSNP
rs112500494 3932 dbSNP
rs926614345 3943 dbSNP
rs1398312855 3946 dbSNP
rs1298039153 3953 dbSNP
rs939369541 3961 dbSNP
rs1418698531 3963 dbSNP
rs1360718115 3984 dbSNP
rs1056956542 3988 dbSNP
rs917169811 3989 dbSNP
rs1367384059 3990 dbSNP
rs1188157191 3992 dbSNP
rs946016330 3997 dbSNP
rs899321987 3999 dbSNP
rs904378227 4001 dbSNP
rs1000338308 4003 dbSNP
rs1488512383 4007 dbSNP
rs1208302438 4014 dbSNP
rs375925460 4014 dbSNP
rs1355651387 4015 dbSNP
rs1247614296 4027 dbSNP
rs1284926742 4027 dbSNP
rs1339163453 4031 dbSNP
rs1277934138 4038 dbSNP
rs1400937103 4047 dbSNP
rs1342787197 4063 dbSNP
rs1319802557 4065 dbSNP
rs1403311822 4075 dbSNP
rs1389369415 4076 dbSNP
rs1163382976 4078 dbSNP
rs1462920229 4082 dbSNP
rs13678 4088 dbSNP
rs1008570257 4092 dbSNP
rs1477992907 4093 dbSNP
rs1243639362 4094 dbSNP
rs1197022316 4097 dbSNP
rs1019173809 4100 dbSNP
rs1290639126 4103 dbSNP
rs1211758992 4105 dbSNP
rs1316181923 4106 dbSNP
rs962281970 4110 dbSNP
rs993804894 4111 dbSNP
rs1028219645 4115 dbSNP
rs952276689 4116 dbSNP
rs981236879 4121 dbSNP
rs1433817461 4122 dbSNP
rs1330203098 4129 dbSNP
rs1033745169 4140 dbSNP
rs11297 4142 dbSNP
rs1466127904 4150 dbSNP
rs146397492 4157 dbSNP
rs1372513182 4158 dbSNP
rs1170633027 4164 dbSNP
rs1477807541 4179 dbSNP
rs992129903 4180 dbSNP
rs1195742523 4194 dbSNP
rs913940954 4202 dbSNP
rs945933614 4207 dbSNP
rs1199820126 4212 dbSNP
rs977392680 4213 dbSNP
rs1218958836 4229 dbSNP
rs1276920148 4229 dbSNP
rs1346188600 4231 dbSNP
rs1275007495 4235 dbSNP
rs1236057768 4236 dbSNP
rs1373995234 4238 dbSNP
rs1330173975 4239 dbSNP
rs925747018 4240 dbSNP
rs935866539 4249 dbSNP
rs1050130927 4250 dbSNP
rs1332136750 4251 dbSNP
rs1413635707 4252 dbSNP
rs1425631361 4253 dbSNP
rs888875714 4254 dbSNP
rs1438140820 4269 dbSNP
rs944473030 4276 dbSNP
rs1379737396 4281 dbSNP
rs749654987 4284 dbSNP
rs563814449 4292 dbSNP
rs1210036404 4301 dbSNP
rs1443296885 4303 dbSNP
rs994147287 4308 dbSNP
rs1351100897 4313 dbSNP
rs1027911722 4315 dbSNP
rs1240175177 4317 dbSNP
rs1374915240 4318 dbSNP
rs1282303889 4324 dbSNP
rs1447280871 4325 dbSNP
rs1359525949 4333 dbSNP
rs1314539198 4334 dbSNP
rs1418076463 4338 dbSNP
rs771383553 4347 dbSNP
rs1159508998 4365 dbSNP
rs1420888778 4368 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HEK293S
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in GSM1084064. RNA binding protein: AGO2. Condition:CLIP_noemetine_AbnovaAb HITS-CLIP data was present in GSM1084073. RNA binding protein: AGO2. Condition:CLIP_hippuristanol_rep1_AbnovaAb HITS-CLIP data was present in GSM1084078. RNA binding protein: AGO2. Condition:CLIP_nohippuristanol_rep2_AbnovaAb ...

- Karginov FV; Hannon GJ, 2013, Genes & development.

Article - Karginov FV; Hannon GJ
- Genes & development, 2013
When adapting to environmental stress, cells attenuate and reprogram their translational output. In part, these altered translation profiles are established through changes in the interactions between RNA-binding proteins and mRNAs. The Argonaute 2 (Ago2)/microRNA (miRNA) machinery has been shown to participate in stress-induced translational up-regulation of a particular mRNA, CAT-1; however, a detailed, transcriptome-wide understanding of the involvement of Ago2 in the process has been lacking. Here, we profiled the overall changes in Ago2-mRNA interactions upon arsenite stress by cross-linking immunoprecipitation (CLIP) followed by high-throughput sequencing (CLIP-seq). Ago2 displayed a significant remodeling of its transcript occupancy, with the majority of 3' untranslated region (UTR) and coding sequence (CDS) sites exhibiting stronger interaction. Interestingly, target sites that were destined for release from Ago2 upon stress were depleted in miRNA complementarity signatures, suggesting an alternative mode of interaction. To compare the changes in Ago2-binding patterns across transcripts with changes in their translational states, we measured mRNA profiles on ribosome/polysome gradients by RNA sequencing (RNA-seq). Increased Ago2 occupancy correlated with stronger repression of translation for those mRNAs, as evidenced by a shift toward lighter gradient fractions upon stress, while release of Ago2 was associated with the limited number of transcripts that remained translated. Taken together, these data point to a role for Ago2 and the mammalian miRNAs in mediating the translational component of the stress response.
LinkOut: [PMID: 23824327]
CLIP-seq Support 1 for dataset GSM1084064
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_noemetine_AbnovaAb
Location of target site ENST00000392319.2 | 3UTR | AAGUGGAUCACUUGAGGU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM1084073
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_hippuristanol_rep1_AbnovaAb
Location of target site ENST00000392319.2 | 3UTR | AAGUGGAUCACUUGAGGUCAGGAGU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
CLIP-seq Support 3 for dataset GSM1084078
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_nohippuristanol_rep2_AbnovaAb
Location of target site ENST00000392319.2 | 3UTR | AAGUGGAUCACUUGAGGUCAGGAGUU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
BRCA 0.708 0.25 0.500 0.33 3 Click to see details
UCEC 0.341 0.39 0.500 0.33 3 Click to see details
BLCA -0.028 0.49 -0.500 0.33 3 Click to see details
HNSC -0.002 0.5 -0.321 0.24 7 Click to see details
HNSC -0.002 0.5 -0.321 0.24 7 Click to see details
HNSC -0.002 0.5 -0.321 0.24 7 Click to see details
HNSC -0.002 0.5 -0.321 0.24 7 Click to see details
HNSC -0.002 0.5 -0.321 0.24 7 Click to see details
109 hsa-miR-1245a Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT006574 BRCA2 BRCA2, DNA repair associated 2 1
MIRT055432 SHOC2 SHOC2, leucine rich repeat scaffold protein 2 2
MIRT063879 RASSF8 Ras association domain family member 8 2 6
MIRT077025 WIPF2 WAS/WASL interacting protein family member 2 2 2
MIRT095775 GRPEL2 GrpE like 2, mitochondrial 2 10
MIRT099172 MAP3K4 mitogen-activated protein kinase kinase kinase 4 2 2
MIRT175616 OCRL OCRL, inositol polyphosphate-5-phosphatase 2 2
MIRT456518 LYPLAL1 lysophospholipase like 1 2 2
MIRT464457 UGCG UDP-glucose ceramide glucosyltransferase 2 2
MIRT465747 TMPPE transmembrane protein with metallophosphoesterase domain 2 2
MIRT468257 SFXN4 sideroflexin 4 2 2
MIRT469216 RICTOR RPTOR independent companion of MTOR complex 2 2 2
MIRT472045 NPAT nuclear protein, coactivator of histone transcription 2 2
MIRT481795 APEX1 apurinic/apyrimidinic endodeoxyribonuclease 1 2 2
MIRT500154 CREBBP CREB binding protein 2 2
MIRT506514 MSANTD4 Myb/SANT DNA binding domain containing 4 with coiled-coils 2 4
MIRT506915 KBTBD8 kelch repeat and BTB domain containing 8 2 6
MIRT513901 GRB10 growth factor receptor bound protein 10 2 6
MIRT519128 ALDH2 aldehyde dehydrogenase 2 family (mitochondrial) 2 2
MIRT528121 FOXH1 forkhead box H1 2 2
MIRT528942 SFMBT2 Scm like with four mbt domains 2 2 2
MIRT540580 CEP89 centrosomal protein 89 2 2
MIRT545858 ZNF264 zinc finger protein 264 2 4
MIRT547147 PGM3 phosphoglucomutase 3 2 2
MIRT547434 MED4 mediator complex subunit 4 2 2
MIRT554650 ROBO1 roundabout guidance receptor 1 2 2
MIRT558524 CSRNP3 cysteine and serine rich nuclear protein 3 2 2
MIRT559762 ABHD5 abhydrolase domain containing 5 2 2
MIRT560438 GOLGA7B golgin A7 family member B 2 2
MIRT561974 LRRC59 leucine rich repeat containing 59 2 2
MIRT562442 DDIT4 DNA damage inducible transcript 4 2 2
MIRT563489 ZWINT ZW10 interacting kinetochore protein 2 2
MIRT568265 BMP2K BMP2 inducible kinase 2 2
MIRT572522 KIAA0232 KIAA0232 2 2
MIRT612801 LSM14A LSM14A, mRNA processing body assembly factor 2 2
MIRT621533 ZNF507 zinc finger protein 507 2 2
MIRT625205 GSTCD glutathione S-transferase C-terminal domain containing 2 2
MIRT625615 ZNF84 zinc finger protein 84 2 2
MIRT629215 C12orf66 chromosome 12 open reading frame 66 2 2
MIRT629509 AS3MT arsenite methyltransferase 2 2
MIRT629769 STK25 serine/threonine kinase 25 2 2
MIRT630908 GATAD1 GATA zinc finger domain containing 1 2 2
MIRT632508 RAB13 RAB13, member RAS oncogene family 2 2
MIRT636871 ARSE arylsulfatase E (chondrodysplasia punctata 1) 2 2
MIRT637106 CXorf23 BCLAF1 and THRAP3 family member 3 2 2
MIRT637332 FAM9B family with sequence similarity 9 member B 2 2
MIRT637553 CHST6 carbohydrate sulfotransferase 6 2 2
MIRT637639 ZNF431 zinc finger protein 431 2 2
MIRT637836 CACNG8 calcium voltage-gated channel auxiliary subunit gamma 8 2 2
MIRT638326 RNF11 ring finger protein 11 2 2
MIRT638393 RAB11FIP1 RAB11 family interacting protein 1 2 2
MIRT642450 CLUAP1 clusterin associated protein 1 2 2
MIRT642616 APOPT1 apoptogenic 1, mitochondrial 2 2
MIRT643133 FAM71F2 family with sequence similarity 71 member F2 2 2
MIRT644324 NFKBID NFKB inhibitor delta 2 2
MIRT645150 DIS3 DIS3 homolog, exosome endoribonuclease and 3'-5' exoribonuclease 2 2
MIRT645673 ADK adenosine kinase 2 2
MIRT646091 MGST3 microsomal glutathione S-transferase 3 2 2
MIRT646858 SLC35E4 solute carrier family 35 member E4 2 2
MIRT650153 ZNF426 zinc finger protein 426 2 2
MIRT652483 TMEM181 transmembrane protein 181 2 2
MIRT653790 SIRPA signal regulatory protein alpha 2 2
MIRT655526 PAG1 phosphoprotein membrane anchor with glycosphingolipid microdomains 1 2 2
MIRT657077 JPH2 junctophilin 2 2 2
MIRT657322 HOOK3 hook microtubule tethering protein 3 2 2
MIRT662036 FUT2 fucosyltransferase 2 2 2
MIRT662322 ADM2 adrenomedullin 2 2 2
MIRT663211 DARS2 aspartyl-tRNA synthetase 2, mitochondrial 2 2
MIRT663559 CCR6 C-C motif chemokine receptor 6 2 2
MIRT663937 ZNF554 zinc finger protein 554 2 2
MIRT664689 EIF2B2 eukaryotic translation initiation factor 2B subunit beta 2 2
MIRT664709 PAICS phosphoribosylaminoimidazole carboxylase and phosphoribosylaminoimidazolesuccinocarboxamide synthase 2 2
MIRT665291 ZFP14 ZFP14 zinc finger protein 2 2
MIRT665572 TXNL1 thioredoxin like 1 2 2
MIRT667068 PAOX polyamine oxidase 2 2
MIRT667304 MYO5A myosin VA 2 2
MIRT667442 METTL14 methyltransferase like 14 2 2
MIRT668048 GTPBP10 GTP binding protein 10 2 2
MIRT669604 AGO3 argonaute 3, RISC catalytic component 2 2
MIRT671088 ABL2 ABL proto-oncogene 2, non-receptor tyrosine kinase 2 2
MIRT674361 SLC35E3 solute carrier family 35 member E3 2 2
MIRT674962 ORAI2 ORAI calcium release-activated calcium modulator 2 2 2
MIRT676394 SEC24D SEC24 homolog D, COPII coat complex component 2 2
MIRT676819 AGMAT agmatinase 2 2
MIRT676891 ENSA endosulfine alpha 2 2
MIRT677059 ZNF34 zinc finger protein 34 2 2
MIRT678424 ANKRD36 ankyrin repeat domain 36 2 2
MIRT678735 SRCAP Snf2 related CREBBP activator protein 2 2
MIRT678930 XPOT exportin for tRNA 2 2
MIRT678954 MYADM myeloid associated differentiation marker 2 2
MIRT679228 MAN2A2 mannosidase alpha class 2A member 2 2 2
MIRT679765 TLR6 toll like receptor 6 2 2
MIRT681992 HRH4 histamine receptor H4 2 2
MIRT687405 NSUN4 NOP2/Sun RNA methyltransferase family member 4 2 2
MIRT694570 RBMXL1 RNA binding motif protein, X-linked like 1 2 2
MIRT698449 TM4SF1 transmembrane 4 L six family member 1 2 2
MIRT706406 HAS2 hyaluronan synthase 2 2 2
MIRT706582 ZNF432 zinc finger protein 432 2 2
MIRT706838 VHLL VHL like 2 2
MIRT706909 DVL3 dishevelled segment polarity protein 3 2 2
MIRT707052 TRPV2 transient receptor potential cation channel subfamily V member 2 2 2
MIRT708583 C11orf54 chromosome 11 open reading frame 54 2 2
MIRT708988 CABP4 calcium binding protein 4 2 2
MIRT713041 ADRA2B adrenoceptor alpha 2B 2 2
MIRT713731 SUCO SUN domain containing ossification factor 2 2
MIRT714968 RAB21 RAB21, member RAS oncogene family 2 2
MIRT717485 PDE4DIP phosphodiesterase 4D interacting protein 2 2
MIRT722826 KLK2 kallikrein related peptidase 2 2 2
MIRT723305 MOGAT1 monoacylglycerol O-acyltransferase 1 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-1245a Trametinib 11707110 NSC758246 approved resistant High Melanoma cell line (M14) (500nM)
hsa-miR-1245a Vemurafenib 42611257 NSC761431 approved resistant High Melanoma cell line (M14) (500nM)
hsa-miR-1245a Trametinib 11707110 NSC758246 approved resistant High Melanoma cell line (M14) (1uM)
hsa-miR-1245a Vemurafenib 42611257 NSC761431 approved resistant High Melanoma cell line (M14) (1uM)
hsa-miR-1245a Cisplatin 5460033 NSC119875 approved sensitive cell line (A2780)
hsa-miR-1245a Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)

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