pre-miRNA Information
pre-miRNA hsa-mir-1306   
Genomic Coordinates chr22: 20086058 - 20086142
Synonyms MIRN1306, hsa-mir-1306, MIR1306
Description Homo sapiens miR-1306 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-1306-5p
Sequence 15| CCACCUCCCCUGCAAACGUCCA |36
Evidence Not_experimental
Experiments
DRVs in miRNA
Mutant ID Mutant Position Mutant Source
COSM5858927 8 COSMIC
COSM8222405 15 COSMIC
COSM1032175 17 COSMIC
COSM122562 22 COSMIC
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1197492175 14 dbSNP
rs1245517093 17 dbSNP
Putative Targets

miRNA Expression profile
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol PDE4C   
Synonyms DPDE1, PDE21
Description phosphodiesterase 4C
Transcript NM_000923   
Other Transcripts NM_001098818 , NM_001098819   
Expression
Putative miRNA Targets on PDE4C
3'UTR of PDE4C
(miRNA target sites are highlighted)
>PDE4C|NM_000923|3'UTR
   1 GGCCAGCCCTGCGTGAACTGCAGGGGCAATGGATGGTAAAGCCCTTTGGCTCTTGGCAGGCAGACTTTCCAGGAAGAGGC
  81 TCCATGTGGCTCCTGCTTCACTTTCCCACCCATTTAGGGAGACAATCAAGCTCTTAGTTATAGGTGGCTCCCAGGGTCTA
 161 ATTGGAGGCACCTGGCTGGGGTCCACTCTGACCCTAGACTTGCCTAAAAGAGCTCTCTAAGGGGCAGCCTCTTACGATGC
 241 CCTGGTGTCTTTCTCCTGGGCTTCTATCCCTGTGAGGAGAGGTGCTGTCTGCTGGAGCCTCTAGTCCACCCTCTCCAGTG
 321 GTCACTCTTGAGTCACATCTGTCACTTAATTATTTCCTTCTTTATCAAATATTTATTGCTCATCTACTTCGTGCCAGCTT
 401 TCTGCCTCTGTAGTAGCCCTGCACAAAGGGTGGGGAGTCAGGAGACCATCCCAAAGGCATCTCCCTGTCTTCCTCTACCA
 481 AGCGGCTCTCTGCAAGAGCATGGAAATGTGAGTGGGGAAAATTTTCAGCACCAAAGCTTCACTCATACCCAGTTTTGTTT
 561 CTGAAACTACGGTAGGGGGCAGGAAGAGGAGCAGAAAAGAAGGGCTGGGCAAGGCATAGTGGCTTATGCCTGTAATCCCG
 641 GTACTTTGGGAGGCTGAGGTGGGAGGACTGCTTAAGCTCAGGAGTTTGAGACCAGCCTGGGCAACATAGCAAGACCCCCA
 721 CCATCTCTGAAAAAAAAAATTAGCCAGGCATGGTGGTGTGCACCTGAGAATCCCAGCTACTCAGAAGGTTGAGACAAAGG
 801 GGATCGCTTGAGCCCAGGAGTTGGAGGCTGAAGAGAGCTATGACTGCATCACTGCACTCCAGCCTGGGCAACACAGCAAG
 881 ATCCTGTCTAAAAATAAAAAGAAAAGAGAAGGAAAGGAAAGAGACGGGGCTCTGAGGCCGAGCACAGTGGCCCATGCCTA
 961 TAATCCCAGCACTTTGGGAGGCTGAGGCAGGTGGATCACCTGAGGTTAGGAGTTCGAGACCAGCCTGGCCAACATGGTGA
1041 AACCCCATCTCTACTAAAAATACAAAAATTGGCTGGGCATGGTGGCGGGTGCCTGTAATCCCAGCTACTGGGGAGGCTGA
1121 GGCAGGAGAATCACTTGAATTCAGGAGGTGGAGGTTGCAGTGAGCCGACATCATGCCACTGCACTCCAGCCTGGGCGACA
1201 GAGCAAGACACTGTCTCAAAAAAGAAAAGAAAAAAAAAAAAGCCGGGCCAGGTGGCTCACGCCTGTAATCCTAGCACTTT
1281 GGGAGGCTGAGTGGGGGTGGATCGCCTGAGATCAGGAGTTCAAAATCAGCCTGGCCAACATAGTGAAACCCTGTCTCTAC
1361 TAAAAATACAAAAAATTAGAGGCTGGGTGCGGCGGCTCACACCTGTAATCCCAGAACTTTGGGAGGCCGAGGCGGGTGGA
1441 TCACGAGGTCAGGAGTTCAAGACCAGCCTGGCCAACACGGTGAAACCCCATCTCTACTAAAAATACACAAATTAGCTGGG
1521 CATGGTGTTGGGTGCCTGAATCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATCGCTTGAATCCGGGAGGCGGGGCTTGC
1601 AGTGAGCCGAGATCGTGCCATTGCACTCCAGCCTGGGTGACAGAGCAAGACTCCGTCTCAAAAAGAAAAAAAAAAAATTA
1681 GCCAGGCATGGTGGCAGGTGCCTGTAATCCCAGCTACTTGAGAGGCTGAGGCAGGAGAATCGCTTGAACCCGGGAGGTGG
1761 AGGTTGTGGTGAGCCGAGGTCGCGCCACTGCACTCCAGCCTGGGCAACGACAACAACAATAAAAAGAGGGGGCTCTGTGC
1841 CCGGCATGTCTCTGAAGACTGATTGAACCTATGCACCAGTTGTTGCTTTAAGTCGCTTTATTTTCTGTCTTTGGTGTCTC
1921 TGGATGTAGGAGCCCCCTGCTTTCTCTGTCCGCAGAACTCCATACTGGGTCCCCTACGTGTTCCTCCTTCCCTAGGACAG
2001 CAACAAAAACACACAATTTTCCCTCTCTAGCAGGTCTCTAAGTCTCCTGATTCCTGAAACTGCCTCAGACTCCCCCTAGA
2081 GGGAGGGAGGCCCCTGAGGCTTTCTTGCCATCATAGCCTCTTCTGGGCCTCAGTTTCCCCTCTGTAACCTGATCCTAGTA
2161 CTTGGATAAACTCCGACGAGGTGTGGGGGGTTGTTGTCTGTGACCTCCCTGAAATATCTTAGACATTTGGGGTACTGAGC
2241 ATTTATCTGGGGTTAAATAAAATCTTTACATCTTAAGACATTCGATTGACCAAATTGAGTGTCCTGGCCATTTCACTGAT
2321 GAGGAAACTGAGGCGCAGAGAGGTCCTCTTGCCAGCTCAAAGTCAAGCATCTGGGCGCCCAATGTTAGCCAGCGGCACCC
2401 CCTGGTGGCGGGCGTGGGAGACACGGCGGGGCGCGCTTGTCGGGGGTTGGGGGGTGGGTCGGAGGGGTGGCATCCTCCAG
2481 CCCTGATGGTCCCACTTACCGCACCTCGCCGGGAAGAGCTCGTCCTGCTGGTCGGGCCTCCGAGCGGACTGGGCAGCACC
2561 ATGCTCAAGCCTAGGGTTCGATCCCCGCCTCCGGAAGCCTCAGTATCCATCCCTCCCCTCTGCCTCCCTCTTCGCGTGCC
2641 TGAATATTTATACAAGATACAGGCGTCATCACAGCCGCCCTCGGCTTCCAGAGCAGCTGGCTTCGTTCATAAATATTATA
2721 ACCACTCAGAATTCATCATCATCACAGTTAATGATAAAATTCCACAGTGCCAGAACTAAAAGTCATCCGGGTTCACGAAC
2801 TTGGTGCATTTCCTTCCAGACTTTTAAAAAGAAGATATTTAGGGAATTTTTTTTTCAAGATTTTTCCCCCCAGTCCGCTT
2881 ACAAAGTAATACCATGTTCGCTGTAAAAAATTTGGAAATAATGGAAATGTATAAAGAAGGAAATAAAATTCTGCTGTATC
2961 TCCACCCA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' accuGCAAAC--GUCCCCUCCACc 5'
              || |||  |  |||||||| 
Target 5' gaatCGCTTGAACCCGGGAGGTGg 3'
1737 - 1760 156.00 -22.10
2
miRNA  3' accugcaaACGUCCCCUCCACc 5'
                  | ||  ||||||| 
Target 5' cacttgaaTTCA--GGAGGTGg 3'
1132 - 1151 142.00 -15.80
3
miRNA  3' accUGCAAAC-GUC-----CCCUCCACc 5'
             :|| ||| |:|     |||:|||| 
Target 5' ggcGCGCTTGTCGGGGGTTGGGGGGTGg 3'
2430 - 2457 139.00 -25.00
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN30532872 12 COSMIC
COSN30107965 13 COSMIC
COSN31523368 15 COSMIC
COSN30491838 24 COSMIC
COSN30468137 31 COSMIC
COSN9349937 62 COSMIC
COSN30468835 73 COSMIC
COSN30525999 86 COSMIC
COSN26988385 87 COSMIC
COSN26800516 236 COSMIC
COSN24779656 301 COSMIC
COSN5183762 313 COSMIC
COSN25263524 414 COSMIC
COSN29533518 729 COSMIC
COSN17571748 932 COSMIC
COSN23927281 1272 COSMIC
COSN21770266 1383 COSMIC
COSN21450962 1415 COSMIC
COSN8256957 1573 COSMIC
COSN14666333 1625 COSMIC
COSN23213221 1666 COSMIC
COSN32012803 1783 COSMIC
COSN9349936 1827 COSMIC
COSN25833624 2455 COSMIC
COSN22619161 2682 COSMIC
COSN32057514 2814 COSMIC
COSN23359420 2847 COSMIC
COSN31961518 2899 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs747530900 6 dbSNP
rs1357106481 7 dbSNP
rs1389241228 8 dbSNP
rs1294649536 11 dbSNP
rs777933309 12 dbSNP
rs758823085 13 dbSNP
rs1298800245 15 dbSNP
rs752244301 17 dbSNP
rs778606769 20 dbSNP
rs1317161738 21 dbSNP
rs1386899283 24 dbSNP
rs989600367 41 dbSNP
rs754624628 42 dbSNP
rs867280733 43 dbSNP
rs1311461494 44 dbSNP
rs753391966 51 dbSNP
rs1338206055 56 dbSNP
rs1240476625 57 dbSNP
rs964483710 62 dbSNP
rs1330402909 70 dbSNP
rs1324906647 72 dbSNP
rs1266620687 82 dbSNP
rs1285674990 86 dbSNP
rs1224819669 92 dbSNP
rs1017345941 101 dbSNP
rs1201264347 102 dbSNP
rs114648302 109 dbSNP
rs1422171016 110 dbSNP
rs1184374153 122 dbSNP
rs1412678226 130 dbSNP
rs554220055 130 dbSNP
rs1012227844 133 dbSNP
rs190418960 143 dbSNP
rs1360671134 146 dbSNP
rs116835552 147 dbSNP
rs187512140 150 dbSNP
rs1301900855 151 dbSNP
rs1185665381 152 dbSNP
rs1004971094 154 dbSNP
rs886572678 156 dbSNP
rs1288397741 158 dbSNP
rs1051970059 162 dbSNP
rs1228305148 167 dbSNP
rs993768416 170 dbSNP
rs1314317938 171 dbSNP
rs1211216395 180 dbSNP
rs1255655006 182 dbSNP
rs544350188 188 dbSNP
rs1469049800 195 dbSNP
rs1207428202 207 dbSNP
rs1037866345 214 dbSNP
rs1178583574 219 dbSNP
rs948941052 226 dbSNP
rs575340659 235 dbSNP
rs1433587285 236 dbSNP
rs555794293 239 dbSNP
rs1375617236 242 dbSNP
rs535501779 255 dbSNP
rs573166911 259 dbSNP
rs1363345887 262 dbSNP
rs1182579262 265 dbSNP
rs1439805470 266 dbSNP
rs553814259 268 dbSNP
rs894547353 269 dbSNP
rs1057267791 270 dbSNP
rs1370301542 273 dbSNP
rs1220223084 282 dbSNP
rs938637528 297 dbSNP
rs1310729004 298 dbSNP
rs924622759 305 dbSNP
rs978371900 306 dbSNP
rs868389082 307 dbSNP
rs7247353 308 dbSNP
rs750405787 310 dbSNP
rs1265374960 313 dbSNP
rs1207448632 322 dbSNP
rs1329048891 330 dbSNP
rs1190475926 347 dbSNP
rs1278478285 353 dbSNP
rs1264986600 359 dbSNP
rs1451036567 361 dbSNP
rs1168846004 366 dbSNP
rs767519514 368 dbSNP
rs989325149 376 dbSNP
rs1337180091 380 dbSNP
rs1053243127 381 dbSNP
rs1352156892 384 dbSNP
rs534069705 385 dbSNP
rs934437481 390 dbSNP
rs757226846 391 dbSNP
rs1437640091 394 dbSNP
rs571514384 410 dbSNP
rs1298647929 411 dbSNP
rs987194034 419 dbSNP
rs1212932462 425 dbSNP
rs1338430410 426 dbSNP
rs1292112924 432 dbSNP
rs866325002 433 dbSNP
rs1384108864 437 dbSNP
rs1159239269 446 dbSNP
rs1220761681 456 dbSNP
rs7259012 466 dbSNP
rs1466115464 467 dbSNP
rs140861807 473 dbSNP
rs973977973 482 dbSNP
rs112604444 483 dbSNP
rs763306149 484 dbSNP
rs1016274485 493 dbSNP
rs1183162171 523 dbSNP
rs1413865069 525 dbSNP
rs983933889 528 dbSNP
rs1445445359 529 dbSNP
rs1164695449 545 dbSNP
rs1392868730 547 dbSNP
rs1245405105 562 dbSNP
rs151014168 567 dbSNP
rs1030896023 570 dbSNP
rs997711828 571 dbSNP
rs1428876176 574 dbSNP
rs894661914 575 dbSNP
rs765602158 576 dbSNP
rs1017848418 579 dbSNP
rs1002959174 591 dbSNP
rs1291391763 598 dbSNP
rs903147901 609 dbSNP
rs1209169663 615 dbSNP
rs1263154084 623 dbSNP
rs1267249984 629 dbSNP
rs1463309813 631 dbSNP
rs1041709994 638 dbSNP
rs142600985 639 dbSNP
rs1472195516 640 dbSNP
rs1383024540 644 dbSNP
rs1179557473 645 dbSNP
rs1011839954 659 dbSNP
rs915143958 665 dbSNP
rs1054141059 676 dbSNP
rs183055135 690 dbSNP
rs551935437 715 dbSNP
rs1160447525 724 dbSNP
rs1325797495 730 dbSNP
rs1388381631 740 dbSNP
rs576573239 740 dbSNP
rs987148140 740 dbSNP
rs1318806484 745 dbSNP
rs1311115803 763 dbSNP
rs1352327323 765 dbSNP
rs1402366399 772 dbSNP
rs1348277279 773 dbSNP
rs1220699575 774 dbSNP
rs1278916445 795 dbSNP
rs117979031 805 dbSNP
rs1162979526 806 dbSNP
rs1425572374 817 dbSNP
rs919042108 820 dbSNP
rs190878039 821 dbSNP
rs1045530307 836 dbSNP
rs1187084357 839 dbSNP
rs1174657499 840 dbSNP
rs1426195456 844 dbSNP
rs533446915 848 dbSNP
rs564396264 854 dbSNP
rs1016489738 855 dbSNP
rs1410437440 859 dbSNP
rs1307371595 860 dbSNP
rs771001221 868 dbSNP
rs1196030268 870 dbSNP
rs1450369287 874 dbSNP
rs1275188638 878 dbSNP
rs948528485 880 dbSNP
rs1266200258 882 dbSNP
rs1221033987 883 dbSNP
rs1231643529 888 dbSNP
rs1359737573 890 dbSNP
rs1293417083 893 dbSNP
rs1212589991 895 dbSNP
rs1205637460 901 dbSNP
rs958820367 911 dbSNP
rs915747184 912 dbSNP
rs376058273 916 dbSNP
rs1461828466 917 dbSNP
rs1432859185 922 dbSNP
rs973927047 925 dbSNP
rs1201555036 926 dbSNP
rs941322040 927 dbSNP
rs1003075349 929 dbSNP
rs1302657657 932 dbSNP
rs1172009839 936 dbSNP
rs903263982 939 dbSNP
rs909200159 940 dbSNP
rs983492573 957 dbSNP
rs950847175 972 dbSNP
rs1394298380 975 dbSNP
rs1167023140 980 dbSNP
rs544415338 983 dbSNP
rs1324063130 992 dbSNP
rs1330306159 1005 dbSNP
rs1042217356 1009 dbSNP
rs1409595633 1015 dbSNP
rs1030390183 1016 dbSNP
rs976184209 1019 dbSNP
rs1227087070 1021 dbSNP
rs1169974935 1026 dbSNP
rs569392537 1031 dbSNP
rs964836662 1035 dbSNP
rs1268739441 1041 dbSNP
rs1198079869 1043 dbSNP
rs1468341346 1044 dbSNP
rs893138832 1046 dbSNP
rs1490350330 1047 dbSNP
rs1250186224 1050 dbSNP
rs1017796258 1054 dbSNP
rs1011830181 1060 dbSNP
rs1371392839 1062 dbSNP
rs1459449752 1067 dbSNP
rs1163803365 1069 dbSNP
rs1270405608 1070 dbSNP
rs1202072014 1086 dbSNP
rs530978761 1087 dbSNP
rs1258985510 1088 dbSNP
rs1433893465 1090 dbSNP
rs1273490471 1093 dbSNP
rs1031736108 1104 dbSNP
rs187466609 1108 dbSNP
rs1321350609 1109 dbSNP
rs1334739946 1111 dbSNP
rs1282485558 1124 dbSNP
rs542292205 1160 dbSNP
rs1270409781 1166 dbSNP
rs1465559919 1167 dbSNP
rs1347532144 1174 dbSNP
rs180764949 1175 dbSNP
rs1441803511 1177 dbSNP
rs1425659313 1186 dbSNP
rs202120315 1193 dbSNP
rs1188310104 1196 dbSNP
rs1198017820 1197 dbSNP
rs1355292609 1199 dbSNP
rs1474184352 1210 dbSNP
rs1161180952 1211 dbSNP
rs1331317057 1216 dbSNP
rs1413065137 1217 dbSNP
rs1429201111 1218 dbSNP
rs1177868177 1219 dbSNP
rs1481696351 1221 dbSNP
rs1025568614 1224 dbSNP
rs1174933503 1225 dbSNP
rs201036552 1229 dbSNP
rs1355456451 1230 dbSNP
rs1491264197 1230 dbSNP
rs60971526 1230 dbSNP
rs200732605 1231 dbSNP
rs869256002 1231 dbSNP
rs1459866969 1232 dbSNP
rs1262262760 1233 dbSNP
rs1259235451 1234 dbSNP
rs1330281706 1234 dbSNP
rs1204284674 1235 dbSNP
rs1256885519 1242 dbSNP
rs1484701188 1242 dbSNP
rs746563494 1242 dbSNP
rs774278440 1242 dbSNP
rs78144205 1242 dbSNP
rs553329006 1244 dbSNP
rs906877756 1245 dbSNP
rs1418303424 1246 dbSNP
rs1239562127 1250 dbSNP
rs993733039 1253 dbSNP
rs1304997232 1257 dbSNP
rs933180013 1260 dbSNP
rs141310087 1261 dbSNP
rs1281419647 1265 dbSNP
rs1450712725 1270 dbSNP
rs1405880386 1272 dbSNP
rs578006014 1281 dbSNP
rs948480663 1282 dbSNP
rs894303999 1284 dbSNP
rs919002805 1286 dbSNP
rs1038205725 1290 dbSNP
rs1306999705 1294 dbSNP
rs558049999 1300 dbSNP
rs963055927 1303 dbSNP
rs1156338668 1304 dbSNP
rs1417937234 1310 dbSNP
rs771469382 1311 dbSNP
rs1345851933 1326 dbSNP
rs1207317664 1327 dbSNP
rs1252508802 1331 dbSNP
rs908875026 1335 dbSNP
rs991704658 1340 dbSNP
rs538061530 1350 dbSNP
rs1192623221 1352 dbSNP
rs529540583 1354 dbSNP
rs190967502 1359 dbSNP
rs929298786 1365 dbSNP
rs967566867 1367 dbSNP
rs1461911139 1377 dbSNP
rs1296898978 1381 dbSNP
rs923271535 1382 dbSNP
rs1183927169 1383 dbSNP
rs1442052437 1389 dbSNP
rs976131739 1390 dbSNP
rs964825163 1391 dbSNP
rs529564044 1393 dbSNP
rs1275435857 1394 dbSNP
rs1317661114 1396 dbSNP
rs1202371893 1397 dbSNP
rs1018684109 1398 dbSNP
rs1006886012 1402 dbSNP
rs1250797533 1404 dbSNP
rs1286410710 1407 dbSNP
rs990359337 1412 dbSNP
rs1418186845 1417 dbSNP
rs559678839 1428 dbSNP
rs1352070184 1429 dbSNP
rs1382268368 1433 dbSNP
rs1325608255 1434 dbSNP
rs1392637535 1436 dbSNP
rs933127810 1438 dbSNP
rs1270931840 1443 dbSNP
rs1316202190 1444 dbSNP
rs1454865190 1445 dbSNP
rs768412607 1445 dbSNP
rs1360503477 1450 dbSNP
rs1212839990 1452 dbSNP
rs897673277 1456 dbSNP
rs1288868462 1459 dbSNP
rs1322222677 1462 dbSNP
rs1036074521 1468 dbSNP
rs941785747 1473 dbSNP
rs746874302 1476 dbSNP
rs1454751568 1477 dbSNP
rs1271026104 1478 dbSNP
rs1466045065 1479 dbSNP
rs1345320411 1485 dbSNP
rs186114987 1487 dbSNP
rs1484622294 1490 dbSNP
rs1183069231 1492 dbSNP
rs1416637289 1494 dbSNP
rs957844690 1497 dbSNP
rs1422397224 1508 dbSNP
rs566394933 1510 dbSNP
rs1164726866 1511 dbSNP
rs1384166395 1514 dbSNP
rs1031895694 1515 dbSNP
rs999533320 1522 dbSNP
rs1163993333 1528 dbSNP
rs1446160216 1529 dbSNP
rs1416160624 1531 dbSNP
rs1259392595 1539 dbSNP
rs1185913931 1540 dbSNP
rs1486139886 1544 dbSNP
rs1459089728 1545 dbSNP
rs971001955 1547 dbSNP
rs1243953469 1550 dbSNP
rs1319264573 1551 dbSNP
rs1220291673 1552 dbSNP
rs747451503 1561 dbSNP
rs546195084 1567 dbSNP
rs1292693626 1570 dbSNP
rs1012614944 1573 dbSNP
rs894253027 1574 dbSNP
rs1306181132 1575 dbSNP
rs1295277599 1580 dbSNP
rs1291286375 1582 dbSNP
rs928857516 1584 dbSNP
rs181334461 1589 dbSNP
rs1005355528 1592 dbSNP
rs1314735409 1597 dbSNP
rs886958786 1602 dbSNP
rs147832772 1608 dbSNP
rs933910408 1609 dbSNP
rs1255978198 1612 dbSNP
rs1364576070 1614 dbSNP
rs1163900868 1615 dbSNP
rs957684054 1620 dbSNP
rs1376146782 1621 dbSNP
rs550839103 1629 dbSNP
rs1311014484 1634 dbSNP
rs923260160 1636 dbSNP
rs1278738857 1643 dbSNP
rs1348174871 1645 dbSNP
rs891141055 1651 dbSNP
rs1280519285 1654 dbSNP
rs1030183550 1655 dbSNP
rs1371172360 1659 dbSNP
rs1169444431 1665 dbSNP
rs1278864401 1666 dbSNP
rs1440053410 1667 dbSNP
rs1183058092 1673 dbSNP
rs1232675663 1677 dbSNP
rs897625586 1678 dbSNP
rs997393533 1678 dbSNP
rs1395864336 1679 dbSNP
rs1434233486 1682 dbSNP
rs1171816063 1687 dbSNP
rs531043338 1688 dbSNP
rs941911068 1690 dbSNP
rs796772085 1691 dbSNP
rs376165939 1696 dbSNP
rs1333775754 1698 dbSNP
rs1438301828 1706 dbSNP
rs1303722679 1708 dbSNP
rs1197370850 1710 dbSNP
rs1040438244 1711 dbSNP
rs1231529404 1712 dbSNP
rs1269683604 1719 dbSNP
rs1225066775 1721 dbSNP
rs1055580695 1730 dbSNP
rs1272870173 1733 dbSNP
rs1436450793 1734 dbSNP
rs943418019 1736 dbSNP
rs910670542 1740 dbSNP
rs1215913874 1741 dbSNP
rs1251139039 1750 dbSNP
rs1453994082 1751 dbSNP
rs1191894267 1752 dbSNP
rs1392120601 1764 dbSNP
rs990654608 1775 dbSNP
rs1167297013 1776 dbSNP
rs1394190273 1781 dbSNP
rs957539366 1782 dbSNP
rs1326328170 1783 dbSNP
rs554894460 1784 dbSNP
rs936960889 1792 dbSNP
rs1438276580 1793 dbSNP
rs188555408 1803 dbSNP
rs981651060 1805 dbSNP
rs562297390 1808 dbSNP
rs1223433593 1809 dbSNP
rs946298586 1813 dbSNP
rs1235605639 1815 dbSNP
rs140807698 1820 dbSNP
rs374786401 1820 dbSNP
rs1468275271 1823 dbSNP
rs542004028 1827 dbSNP
rs1264077746 1829 dbSNP
rs1447678935 1835 dbSNP
rs977692407 1839 dbSNP
rs990705326 1842 dbSNP
rs971658492 1843 dbSNP
rs528589518 1844 dbSNP
rs1165487444 1850 dbSNP
rs1462247424 1867 dbSNP
rs1416900626 1868 dbSNP
rs1459638842 1870 dbSNP
rs773977667 1875 dbSNP
rs559548461 1877 dbSNP
rs767984774 1887 dbSNP
rs1322159774 1892 dbSNP
rs1012565158 1894 dbSNP
rs546235582 1895 dbSNP
rs1381197442 1914 dbSNP
rs911278419 1918 dbSNP
rs985529014 1926 dbSNP
rs955338046 1930 dbSNP
rs1294375933 1936 dbSNP
rs745512485 1944 dbSNP
rs1016659850 1947 dbSNP
rs1005714753 1951 dbSNP
rs1231793653 1952 dbSNP
rs1029628143 1958 dbSNP
rs1351634505 1960 dbSNP
rs1430121296 1965 dbSNP
rs1201040011 1972 dbSNP
rs1259759917 1977 dbSNP
rs994216601 1987 dbSNP
rs577283593 1999 dbSNP
rs886913942 2008 dbSNP
rs1014865476 2010 dbSNP
rs1160975700 2010 dbSNP
rs1006452474 2015 dbSNP
rs558113254 2016 dbSNP
rs887629582 2016 dbSNP
rs1376752172 2018 dbSNP
rs1055528433 2027 dbSNP
rs1481862600 2032 dbSNP
rs1355361527 2036 dbSNP
rs1261645804 2039 dbSNP
rs1413366665 2042 dbSNP
rs1309600844 2054 dbSNP
rs1047372744 2058 dbSNP
rs184192513 2060 dbSNP
rs1238609256 2066 dbSNP
rs998100622 2068 dbSNP
rs1001287321 2075 dbSNP
rs1211655847 2076 dbSNP
rs1283400858 2077 dbSNP
rs1279569090 2082 dbSNP
rs1234717895 2086 dbSNP
rs181585838 2090 dbSNP
rs1178784773 2091 dbSNP
rs901114043 2098 dbSNP
rs1418226661 2100 dbSNP
rs1179265516 2104 dbSNP
rs906834241 2109 dbSNP
rs1434853351 2120 dbSNP
rs1172441909 2122 dbSNP
rs1040388105 2127 dbSNP
rs1045423481 2129 dbSNP
rs943324578 2130 dbSNP
rs555538074 2131 dbSNP
rs1305937789 2142 dbSNP
rs1054507617 2172 dbSNP
rs913461937 2173 dbSNP
rs1305188484 2174 dbSNP
rs1391602984 2175 dbSNP
rs936116156 2184 dbSNP
rs1235199311 2186 dbSNP
rs1334412779 2190 dbSNP
rs1206548021 2191 dbSNP
rs936145135 2191 dbSNP
rs911394778 2194 dbSNP
rs924799712 2196 dbSNP
rs978013656 2197 dbSNP
rs1193837712 2198 dbSNP
rs111475816 2204 dbSNP
rs1454444482 2207 dbSNP
rs1406668390 2210 dbSNP
rs868190338 2212 dbSNP
rs1174404252 2229 dbSNP
rs779802378 2231 dbSNP
rs922726197 2236 dbSNP
rs973124557 2239 dbSNP
rs1182870987 2249 dbSNP
rs1441753611 2255 dbSNP
rs1355603263 2256 dbSNP
rs961428146 2257 dbSNP
rs535252077 2270 dbSNP
rs1241722437 2274 dbSNP
rs1015225824 2276 dbSNP
rs560307765 2283 dbSNP
rs1034192414 2284 dbSNP
rs1365628676 2286 dbSNP
rs1216357005 2288 dbSNP
rs1183323933 2290 dbSNP
rs566574473 2291 dbSNP
rs1462170253 2296 dbSNP
rs1306818755 2297 dbSNP
rs1265474657 2304 dbSNP
rs991718438 2305 dbSNP
rs1203895972 2310 dbSNP
rs1212716480 2315 dbSNP
rs1001403411 2317 dbSNP
rs958325767 2327 dbSNP
rs552620304 2332 dbSNP
rs532834575 2334 dbSNP
rs1428423751 2335 dbSNP
rs1169087309 2338 dbSNP
rs1420483251 2345 dbSNP
rs1462260436 2346 dbSNP
rs1378605575 2351 dbSNP
rs1282735603 2352 dbSNP
rs563815355 2353 dbSNP
rs1433031556 2356 dbSNP
rs1451573967 2363 dbSNP
rs951245302 2364 dbSNP
rs745695086 2368 dbSNP
rs1398086760 2374 dbSNP
rs1336164498 2376 dbSNP
rs1295008040 2382 dbSNP
rs781108934 2389 dbSNP
rs891480097 2393 dbSNP
rs189206783 2397 dbSNP
rs936276643 2403 dbSNP
rs1215955400 2409 dbSNP
rs1159183832 2410 dbSNP
rs111504559 2411 dbSNP
rs911511168 2413 dbSNP
rs934182227 2414 dbSNP
rs1421782727 2418 dbSNP
rs901022364 2424 dbSNP
rs1018182658 2425 dbSNP
rs1383565320 2426 dbSNP
rs1163352220 2427 dbSNP
rs1445691017 2428 dbSNP
rs1006816740 2431 dbSNP
rs889112242 2432 dbSNP
rs1054901094 2433 dbSNP
rs1417885887 2434 dbSNP
rs1446903894 2437 dbSNP
rs1260473254 2440 dbSNP
rs1378933092 2441 dbSNP
rs1216640837 2442 dbSNP
rs1414007468 2442 dbSNP
rs1006204821 2447 dbSNP
rs889147842 2448 dbSNP
rs1375179303 2454 dbSNP
rs1050490821 2455 dbSNP
rs372475256 2457 dbSNP
rs997639684 2459 dbSNP
rs1283075058 2461 dbSNP
rs1289058110 2463 dbSNP
rs901636363 2468 dbSNP
rs972853638 2469 dbSNP
rs1283139590 2470 dbSNP
rs145436592 2471 dbSNP
rs1359959708 2480 dbSNP
rs1285707874 2481 dbSNP
rs1471324575 2483 dbSNP
rs1178018405 2487 dbSNP
rs550902277 2491 dbSNP
rs1325739155 2499 dbSNP
rs531232075 2500 dbSNP
rs1376051444 2502 dbSNP
rs985078982 2502 dbSNP
rs1332031407 2507 dbSNP
rs1363788122 2508 dbSNP
rs568613223 2511 dbSNP
rs950196613 2513 dbSNP
rs1416467187 2517 dbSNP
rs548773169 2519 dbSNP
rs991666106 2521 dbSNP
rs937629816 2524 dbSNP
rs1200391104 2533 dbSNP
rs1277075740 2534 dbSNP
rs1024452278 2536 dbSNP
rs909547859 2537 dbSNP
rs984216979 2541 dbSNP
rs1456597416 2542 dbSNP
rs1195664752 2546 dbSNP
rs1193762850 2548 dbSNP
rs1453826254 2549 dbSNP
rs1489022316 2551 dbSNP
rs951150055 2552 dbSNP
rs1032673192 2553 dbSNP
rs1266132313 2557 dbSNP
rs1397745668 2558 dbSNP
rs999859878 2560 dbSNP
rs1326086655 2570 dbSNP
rs1025789612 2571 dbSNP
rs1230406174 2576 dbSNP
rs1273621239 2577 dbSNP
rs1451788889 2580 dbSNP
rs976518971 2581 dbSNP
rs1215583038 2589 dbSNP
rs1257832821 2591 dbSNP
rs1291798425 2592 dbSNP
rs1049993114 2593 dbSNP
rs1253808333 2612 dbSNP
rs1338679516 2615 dbSNP
rs1196811255 2618 dbSNP
rs965170185 2620 dbSNP
rs1018129839 2633 dbSNP
rs764738414 2634 dbSNP
rs1343776556 2635 dbSNP
rs1462785139 2647 dbSNP
rs1165224859 2649 dbSNP
rs1037484002 2653 dbSNP
rs751451935 2657 dbSNP
rs1405814770 2658 dbSNP
rs202211679 2663 dbSNP
rs1326441785 2664 dbSNP
rs1032999582 2676 dbSNP
rs1278075876 2677 dbSNP
rs1316467656 2681 dbSNP
rs984135934 2683 dbSNP
rs1274087016 2690 dbSNP
rs1327288804 2697 dbSNP
rs1000575616 2701 dbSNP
rs1355911145 2722 dbSNP
rs903201447 2727 dbSNP
rs1208202641 2737 dbSNP
rs1409685155 2742 dbSNP
rs1397654556 2745 dbSNP
rs1286446122 2754 dbSNP
rs1173521615 2782 dbSNP
rs1447588566 2783 dbSNP
rs1041744183 2784 dbSNP
rs938022675 2789 dbSNP
rs1260874241 2790 dbSNP
rs528643438 2791 dbSNP
rs116262991 2796 dbSNP
rs1456075140 2809 dbSNP
rs1159867560 2812 dbSNP
rs552682962 2835 dbSNP
rs1399561297 2838 dbSNP
rs1055929472 2848 dbSNP
rs1339052468 2849 dbSNP
rs1417086589 2855 dbSNP
rs1024148937 2856 dbSNP
rs756524455 2856 dbSNP
rs937591071 2860 dbSNP
rs1242889405 2861 dbSNP
rs910153636 2865 dbSNP
rs753055904 2866 dbSNP
rs1351525164 2872 dbSNP
rs1215959929 2875 dbSNP
rs1283875963 2876 dbSNP
rs1048656451 2877 dbSNP
rs1200496768 2887 dbSNP
rs1033197246 2889 dbSNP
rs1421787321 2890 dbSNP
rs999807462 2892 dbSNP
rs1363994654 2895 dbSNP
rs1262619142 2899 dbSNP
rs929610045 2900 dbSNP
rs1359256112 2911 dbSNP
rs889465402 2911 dbSNP
rs1219832383 2913 dbSNP
rs1028509923 2918 dbSNP
rs1370009889 2927 dbSNP
rs1401984244 2929 dbSNP
rs1394603398 2942 dbSNP
rs1309488091 2943 dbSNP
rs1336572440 2953 dbSNP
rs532586708 2956 dbSNP
rs1307193851 2963 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HEK293S
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in GSM1084042. RNA binding protein: AGO2. Condition:CLIP_noarsenite_rep2 HITS-CLIP data was present in GSM1084078. RNA binding protein: AGO2. Condition:CLIP_nohippuristanol_rep2_AbnovaAb ...

- Karginov FV; Hannon GJ, 2013, Genes & development.

Article - Karginov FV; Hannon GJ
- Genes & development, 2013
When adapting to environmental stress, cells attenuate and reprogram their translational output. In part, these altered translation profiles are established through changes in the interactions between RNA-binding proteins and mRNAs. The Argonaute 2 (Ago2)/microRNA (miRNA) machinery has been shown to participate in stress-induced translational up-regulation of a particular mRNA, CAT-1; however, a detailed, transcriptome-wide understanding of the involvement of Ago2 in the process has been lacking. Here, we profiled the overall changes in Ago2-mRNA interactions upon arsenite stress by cross-linking immunoprecipitation (CLIP) followed by high-throughput sequencing (CLIP-seq). Ago2 displayed a significant remodeling of its transcript occupancy, with the majority of 3' untranslated region (UTR) and coding sequence (CDS) sites exhibiting stronger interaction. Interestingly, target sites that were destined for release from Ago2 upon stress were depleted in miRNA complementarity signatures, suggesting an alternative mode of interaction. To compare the changes in Ago2-binding patterns across transcripts with changes in their translational states, we measured mRNA profiles on ribosome/polysome gradients by RNA sequencing (RNA-seq). Increased Ago2 occupancy correlated with stronger repression of translation for those mRNAs, as evidenced by a shift toward lighter gradient fractions upon stress, while release of Ago2 was associated with the limited number of transcripts that remained translated. Taken together, these data point to a role for Ago2 and the mammalian miRNAs in mediating the translational component of the stress response.
LinkOut: [PMID: 23824327]
CLIP-seq Support 1 for dataset GSM1084042
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_noarsenite_rep2
Location of target site ENST00000355502.3 | 3UTR | AGAGGCUGAGGCAGGAGAAUCGCUUGAACCCGGGAG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM1084078
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_nohippuristanol_rep2_AbnovaAb
Location of target site ENST00000355502.3 | 3UTR | UCAGGAGGUGGAGGUUGCAGU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
184 hsa-miR-1306-5p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT089458 TET3 tet methylcytosine dioxygenase 3 2 2
MIRT167143 LHFPL2 LHFPL tetraspan subfamily member 2 2 2
MIRT290873 BCL10 B-cell CLL/lymphoma 10 2 2
MIRT320237 CYCS cytochrome c, somatic 2 2
MIRT462980 ZNF784 zinc finger protein 784 2 2
MIRT478039 DNAJC10 DnaJ heat shock protein family (Hsp40) member C10 2 2
MIRT479102 CNNM4 cyclin and CBS domain divalent metal cation transport mediator 4 2 4
MIRT482763 TMEM126B transmembrane protein 126B 2 2
MIRT489972 MCC mutated in colorectal cancers 2 4
MIRT495484 TNFAIP2 TNF alpha induced protein 2 2 2
MIRT496148 GPS1 G protein pathway suppressor 1 2 2
MIRT523370 GSR glutathione-disulfide reductase 2 2
MIRT526299 SORCS2 sortilin related VPS10 domain containing receptor 2 2 4
MIRT527427 NRL neural retina leucine zipper 2 2
MIRT527860 SMOC1 SPARC related modular calcium binding 1 2 6
MIRT529685 FBXL19 F-box and leucine rich repeat protein 19 2 2
MIRT531526 NOM1 nucleolar protein with MIF4G domain 1 2 2
MIRT532461 PLGRKT plasminogen receptor with a C-terminal lysine 2 2
MIRT532519 KCNN1 potassium calcium-activated channel subfamily N member 1 2 2
MIRT532668 APOBEC3D apolipoprotein B mRNA editing enzyme catalytic subunit 3D 2 2
MIRT532718 SNRPD3 small nuclear ribonucleoprotein D3 polypeptide 2 2
MIRT533205 WAPAL WAPL cohesin release factor 2 2
MIRT536480 KIAA1549 KIAA1549 2 2
MIRT537158 GID8 GID complex subunit 8 homolog 2 2
MIRT539307 AKIRIN1 akirin 1 2 2
MIRT539569 CNKSR3 CNKSR family member 3 2 4
MIRT540045 DNAJC28 DnaJ heat shock protein family (Hsp40) member C28 2 4
MIRT540235 SAMD5 sterile alpha motif domain containing 5 2 2
MIRT543016 CRK CRK proto-oncogene, adaptor protein 2 2
MIRT551436 F2 coagulation factor II, thrombin 2 2
MIRT556146 MED12L mediator complex subunit 12 like 2 2
MIRT570714 DGKE diacylglycerol kinase epsilon 2 2
MIRT572037 GRWD1 glutamate rich WD repeat containing 1 2 2
MIRT572409 MRPS14 mitochondrial ribosomal protein S14 2 2
MIRT572660 AGMAT agmatinase 2 4
MIRT611450 NRIP3 nuclear receptor interacting protein 3 2 2
MIRT611601 JAKMIP3 Janus kinase and microtubule interacting protein 3 2 4
MIRT612208 TMEM109 transmembrane protein 109 2 2
MIRT612312 VSIG10 V-set and immunoglobulin domain containing 10 2 2
MIRT614146 MAFK MAF bZIP transcription factor K 2 2
MIRT617371 C21orf62 chromosome 21 open reading frame 62 2 2
MIRT617689 MAPKBP1 mitogen-activated protein kinase binding protein 1 2 2
MIRT618495 DENND5B DENN domain containing 5B 2 4
MIRT618802 SPATA21 spermatogenesis associated 21 2 2
MIRT619061 TTC4 tetratricopeptide repeat domain 4 2 2
MIRT619902 NPTXR neuronal pentraxin receptor 2 2
MIRT620080 DZIP1L DAZ interacting zinc finger protein 1 like 2 2
MIRT622233 SLC25A45 solute carrier family 25 member 45 2 2
MIRT625262 ZNF566 zinc finger protein 566 2 2
MIRT625725 CXorf38 chromosome X open reading frame 38 2 2
MIRT625813 POFUT1 protein O-fucosyltransferase 1 2 2
MIRT625839 NXPE2 neurexophilin and PC-esterase domain family member 2 2 2
MIRT626024 XRCC2 X-ray repair cross complementing 2 2 2
MIRT626054 PDE4C phosphodiesterase 4C 2 2
MIRT626082 CWF19L1 CWF19 like 1, cell cycle control (S. pombe) 2 2
MIRT626356 PACS1 phosphofurin acidic cluster sorting protein 1 2 2
MIRT626790 KCNK6 potassium two pore domain channel subfamily K member 6 2 2
MIRT627797 RAB11FIP1 RAB11 family interacting protein 1 2 2
MIRT628234 FAM212B family with sequence similarity 212 member B 2 2
MIRT628241 FADS1 fatty acid desaturase 1 2 2
MIRT628249 ETF1 eukaryotic translation termination factor 1 2 2
MIRT628799 A2ML1 alpha-2-macroglobulin like 1 2 2
MIRT628879 FAM177A1 family with sequence similarity 177 member A1 2 4
MIRT629333 ZNF487P zinc finger protein 487 1 1
MIRT629435 RPL34 ribosomal protein L34 2 2
MIRT629977 MRPL36 mitochondrial ribosomal protein L36 2 2
MIRT630727 FPR1 formyl peptide receptor 1 2 2
MIRT630776 MSANTD3 Myb/SANT DNA binding domain containing 3 2 2
MIRT631074 ZNF829 zinc finger protein 829 2 2
MIRT633139 C6orf132 chromosome 6 open reading frame 132 2 2
MIRT633178 AGO3 argonaute 3, RISC catalytic component 2 2
MIRT633510 RNF14 ring finger protein 14 2 2
MIRT633613 APCDD1 APC down-regulated 1 2 2
MIRT633668 MYO1F myosin IF 2 2
MIRT633707 LRRC8B leucine rich repeat containing 8 VRAC subunit B 2 2
MIRT633798 SOX7 SRY-box 7 2 2
MIRT634203 TMOD2 tropomodulin 2 2 4
MIRT634297 SUGT1 SGT1 homolog, MIS12 kinetochore complex assembly cochaperone 2 2
MIRT634509 NYAP2 neuronal tyrosine-phosphorylated phosphoinositide-3-kinase adaptor 2 2 2
MIRT634518 NKAP NFKB activating protein 2 2
MIRT634754 CRCP CGRP receptor component 2 2
MIRT635741 IFNAR1 interferon alpha and beta receptor subunit 1 2 2
MIRT636480 KLHL7 kelch like family member 7 2 2
MIRT637042 FITM2 fat storage inducing transmembrane protein 2 2 2
MIRT637748 POLR3K RNA polymerase III subunit K 2 2
MIRT638568 IFNE interferon epsilon 2 2
MIRT639155 TMEM167A transmembrane protein 167A 2 2
MIRT639848 ZBTB20 zinc finger and BTB domain containing 20 2 2
MIRT641770 ZNF207 zinc finger protein 207 2 2
MIRT642285 ZNF99 zinc finger protein 99 2 2
MIRT642685 KRT74 keratin 74 2 2
MIRT643530 ERAP2 endoplasmic reticulum aminopeptidase 2 2 2
MIRT643742 ZNF284 zinc finger protein 284 2 4
MIRT643945 WIPF3 WAS/WASL interacting protein family member 3 2 2
MIRT644320 NFKBID NFKB inhibitor delta 2 2
MIRT644383 ZNF286A zinc finger protein 286A 2 2
MIRT645130 HES2 hes family bHLH transcription factor 2 2 2
MIRT645607 PCDH11X protocadherin 11 X-linked 2 2
MIRT647121 ZNF446 zinc finger protein 446 2 2
MIRT648484 CMBL carboxymethylenebutenolidase homolog 2 2
MIRT648549 BBS5 Bardet-Biedl syndrome 5 2 2
MIRT649252 TRIM65 tripartite motif containing 65 2 2
MIRT649468 SLC10A7 solute carrier family 10 member 7 2 2
MIRT650013 KLB klotho beta 2 2
MIRT650068 CCDC134 coiled-coil domain containing 134 2 2
MIRT650325 RTN2 reticulon 2 2 2
MIRT651093 ZNF516 zinc finger protein 516 2 2
MIRT651265 ZKSCAN4 zinc finger with KRAB and SCAN domains 4 2 2
MIRT651272 ZKSCAN1 zinc finger with KRAB and SCAN domains 1 2 2
MIRT651402 ZBTB16 zinc finger and BTB domain containing 16 2 2
MIRT652163 TRIM66 tripartite motif containing 66 2 2
MIRT653153 SRGAP1 SLIT-ROBO Rho GTPase activating protein 1 2 2
MIRT653477 SLC4A1 solute carrier family 4 member 1 (Diego blood group) 2 2
MIRT653922 SERPINC1 serpin family C member 1 2 2
MIRT654243 RNF115 ring finger protein 115 2 2
MIRT655354 PCDH11Y protocadherin 11 Y-linked 2 2
MIRT655958 NDST1 N-deacetylase and N-sulfotransferase 1 2 2
MIRT656318 MESDC1 talin rod domain containing 1 2 2
MIRT656578 LSM10 LSM10, U7 small nuclear RNA associated 2 2
MIRT657210 IKZF2 IKAROS family zinc finger 2 2 2
MIRT657856 GJB1 gap junction protein beta 1 2 2
MIRT658207 FBXO44 F-box protein 44 2 2
MIRT659003 DIAPH1 diaphanous related formin 1 2 2
MIRT659349 CSRP1 cysteine and glycine rich protein 1 2 2
MIRT659501 CISD3 CDGSH iron sulfur domain 3 2 2
MIRT659761 CCDC171 coiled-coil domain containing 171 2 2
MIRT660149 BRD4 bromodomain containing 4 2 2
MIRT661582 EPHX2 epoxide hydrolase 2 2 2
MIRT661753 ATM ATM serine/threonine kinase 2 2
MIRT662223 CCRL2 C-C motif chemokine receptor like 2 2 2
MIRT663883 CXorf56 chromosome X open reading frame 56 2 2
MIRT664308 HINT1 histidine triad nucleotide binding protein 1 2 2
MIRT664649 GALM galactose mutarotase 2 2
MIRT664671 L2HGDH L-2-hydroxyglutarate dehydrogenase 2 2
MIRT665050 C3 complement C3 2 2
MIRT666467 SCRG1 stimulator of chondrogenesis 1 2 2
MIRT666529 RNF170 ring finger protein 170 2 2
MIRT669118 CDC42BPG CDC42 binding protein kinase gamma 2 2
MIRT669311 C17orf75 chromosome 17 open reading frame 75 2 2
MIRT669358 BHLHE22 basic helix-loop-helix family member e22 2 2
MIRT669691 ABLIM1 actin binding LIM protein 1 2 2
MIRT674223 FAM120AOS family with sequence similarity 120A opposite strand 2 2
MIRT674766 QRSL1 glutaminyl-tRNA synthase (glutamine-hydrolyzing)-like 1 2 2
MIRT675207 ZNF554 zinc finger protein 554 2 2
MIRT675271 ZNF431 zinc finger protein 431 2 2
MIRT676265 PBOV1 prostate and breast cancer overexpressed 1 2 2
MIRT676573 VSIG1 V-set and immunoglobulin domain containing 1 2 2
MIRT677566 C19orf52 translocase of inner mitochondrial membrane 29 2 2
MIRT677631 ALG1 ALG1, chitobiosyldiphosphodolichol beta-mannosyltransferase 2 2
MIRT678115 MICA MHC class I polypeptide-related sequence A 2 2
MIRT678694 RNF157 ring finger protein 157 2 2
MIRT679583 UGGT1 UDP-glucose glycoprotein glucosyltransferase 1 2 2
MIRT679621 MED28 mediator complex subunit 28 2 2
MIRT683700 LAX1 lymphocyte transmembrane adaptor 1 2 2
MIRT683721 LACTB lactamase beta 2 2
MIRT690967 APOL1 apolipoprotein L1 2 2
MIRT691611 IPP intracisternal A particle-promoted polypeptide 2 2
MIRT702524 KCND3 potassium voltage-gated channel subfamily D member 3 2 2
MIRT704762 CDKN2AIPNL CDKN2A interacting protein N-terminal like 2 2
MIRT708738 FAM71F2 family with sequence similarity 71 member F2 2 2
MIRT708898 SKIDA1 SKI/DACH domain containing 1 2 2
MIRT709965 TRUB2 TruB pseudouridine synthase family member 2 2 2
MIRT710373 GM2A GM2 ganglioside activator 2 2
MIRT710533 TMEM201 transmembrane protein 201 2 2
MIRT710582 HLCS holocarboxylase synthetase 2 2
MIRT711030 MBOAT2 membrane bound O-acyltransferase domain containing 2 2 2
MIRT712200 SHROOM4 shroom family member 4 2 2
MIRT713798 CPLX2 complexin 2 2 2
MIRT714096 ZNF486 zinc finger protein 486 2 2
MIRT714923 PPP1R12C protein phosphatase 1 regulatory subunit 12C 2 2
MIRT716518 TNPO2 transportin 2 2 2
MIRT716701 HLA-B major histocompatibility complex, class I, B 2 2
MIRT717070 MTMR6 myotubularin related protein 6 2 2
MIRT719561 CBL Cbl proto-oncogene 2 2
MIRT719688 ALDH1L2 aldehyde dehydrogenase 1 family member L2 2 2
MIRT720134 RIMKLA ribosomal modification protein rimK like family member A 2 2
MIRT720222 IPPK inositol-pentakisphosphate 2-kinase 2 2
MIRT720982 METTL21A methyltransferase like 21A 2 2
MIRT723821 PDS5A PDS5 cohesin associated factor A 2 2
MIRT723999 LMTK2 lemur tyrosine kinase 2 2 2
MIRT724963 PTK6 protein tyrosine kinase 6 2 2
MIRT725217 PEA15 phosphoprotein enriched in astrocytes 15 2 2
MIRT725262 PARVB parvin beta 2 2
MIRT755883 METTL14 methyltransferase like 14 3 1
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-1306 Cisplatin 5460033 NSC119875 approved resistant cell line (A2780)
hsa-mir-1306 Fluorouracil 3385 NSC19893 approved resistant cell line (KYSE)
hsa-miR-1306-5p Imatinib 5291 NSC743414 approved resistant High Chronic Myelogenous Leukemia tissue
hsa-miR-1306-5p Paclitaxel 36314 NSC125973 approved sensitive cell line (HS578T)
hsa-miR-1306-5p Doxorubicin 31703 NSC123127 approved sensitive cell line (HS578T)
hsa-miR-1306-5p Cisplatin 5460033 NSC119875 approved resistant cell line (A549)
hsa-miR-1306-5p Gemcitabine 60750 NSC613327 approved resistant cell line (PANC-1) (1500 ng/ml)

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