pre-miRNA Information
pre-miRNA hsa-mir-640   
Genomic Coordinates chr19: 19435063 - 19435158
Synonyms MIRN640, hsa-mir-640, MIR640
Description Homo sapiens miR-640 stem-loop
Comment None
RNA Secondary Structure
Associated Diseases

Mature miRNA Information
Mature miRNA hsa-miR-640
Sequence 61| AUGAUCCAGGAACCUGCCUCU |81
Evidence Experimental
Experiments RT-PCR
DRVs in miRNA
Mutant ID Mutant Position Mutant Source
COSN30153378 1 COSMIC
COSN23015356 12 COSMIC
COSN30513185 19 COSMIC
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs111726405 1 dbSNP
rs765622881 2 dbSNP
rs1249744889 6 dbSNP
rs752995186 12 dbSNP
rs758746736 13 dbSNP
rs918887970 19 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol IL23R   
Synonyms -
Description interleukin 23 receptor
Transcript NM_144701   
Expression
Putative miRNA Targets on IL23R
3'UTR of IL23R
(miRNA target sites are highlighted)
>IL23R|NM_144701|3'UTR
   1 AGCTGTGTGGTCAAAATCAATATGAGAAAGCTGCCTTGCAATCTGAACTTGGGTTTTCCCTGCAATAGAAATTGAATTCT
  81 GCCTCTTTTTGAAAAAAATGTATTCACATACAAATCTTCACATGGACACATGTTTTCATTTCCCTTGGATAAATACCTAG
 161 GTAGGGGATTGCTGGGCCATATGATAAGCATATGTTTCAGTTCTACCAATCTTGTTTCCAGAGTAGTGACATTTCTGTGC
 241 TCCTACCATCACCATGTAAGAATTCCCGGGAGCTCCATGCCTTTTTAATTTTAGCCATTCTTCTGCCTCATTTCTTAAAA
 321 TTAGAGAATTAAGGTCCCGAAGGTGGAACATGCTTCATGGTCACACATACAGGCACAAAAACAGCATTATGTGGACGCCT
 401 CATGTATTTTTTATAGAGTCAACTATTTCCTCTTTATTTTCCCTCATTGAAAGATGCAAAACAGCTCTCTATTGTGTACA
 481 GAAAGGGTAAATAATGCAAAATACCTGGTAGTAAAATAAATGCTGAAAATTTTCCTTTAAAATAGAATCATTAGGCCAGG
 561 CGTGGTGGCTCATGCTTGTAATCCCAGCACTTTGGTAGGCTGAGGTAGGTGGATCACCTGAGGTCAGGAGTTCGAGTCCA
 641 GCCTGGCCAATATGCTGAAACCCTGTCTCTACTAAAATTACAAAAATTAGCCGGCCATGGTGGCAGGTGCTTGTAATCCC
 721 AGCTACTTGGGAGGCTGAGGCAGGAGAATCACTTGAACCAGGAAGGCAGAGGTTGCACTGAGCTGAGATTGTGCCACTGC
 801 ACTCCAGCCTGGGCAACAAGAGCAAAACTCTGTCTGGAAAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' ucUCCG--UCCAAGGACCUAGUa 5'
            ||||  ||||   ||||||| 
Target 5' gtAGGCTGAGGTAGGTGGATCAc 3'
595 - 617 161.00 -20.00
2
miRNA  3' ucUCCGUCC---AAGGACCUAGUa 5'
            |||:|||   || ||||: || 
Target 5' ctAGGTAGGGGATTGCTGGGCCAt 3'
157 - 180 123.00 -19.80
3
miRNA  3' ucUCC-GUCC-AAGGACCUAGUa 5'
            ||| ||||  |  ||| ||| 
Target 5' ttAGGCCAGGCGTGGTGGCTCAt 3'
551 - 573 123.00 -13.90
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSM6579605 1 COSMIC
COSN24297983 2 COSMIC
COSN32067449 3 COSMIC
COSN31487924 13 COSMIC
COSN30182830 19 COSMIC
COSN1452739 32 COSMIC
COSN30499781 41 COSMIC
COSN30181696 56 COSMIC
COSN30516601 59 COSMIC
COSN30135212 69 COSMIC
COSN30150637 69 COSMIC
COSN30522330 75 COSMIC
COSN30755065 90 COSMIC
COSN20080455 99 COSMIC
COSN30661541 175 COSMIC
COSN6042037 235 COSMIC
COSN1107449 258 COSMIC
COSN31960256 296 COSMIC
COSN27762295 694 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs765331957 4 dbSNP
rs757286659 5 dbSNP
rs1247038371 12 dbSNP
rs11465827 18 dbSNP
rs751643545 20 dbSNP
rs760229972 21 dbSNP
rs758389088 22 dbSNP
rs1250367150 30 dbSNP
rs1351437352 31 dbSNP
rs1485088659 34 dbSNP
rs535898796 35 dbSNP
rs1257396571 40 dbSNP
rs1423921104 43 dbSNP
rs1166223600 48 dbSNP
rs1460862007 48 dbSNP
rs921784129 50 dbSNP
rs1176960504 56 dbSNP
rs1413943867 59 dbSNP
rs1427518330 66 dbSNP
rs1161577850 69 dbSNP
rs1473467813 69 dbSNP
rs555717578 73 dbSNP
rs1176563589 75 dbSNP
rs1410897554 80 dbSNP
rs11465828 82 dbSNP
rs375556247 92 dbSNP
rs936383832 94 dbSNP
rs1322190384 97 dbSNP
rs1260892224 111 dbSNP
rs1051715182 120 dbSNP
rs914045700 126 dbSNP
rs764164402 130 dbSNP
rs1347482250 132 dbSNP
rs1216649715 141 dbSNP
rs149543590 145 dbSNP
rs940580631 155 dbSNP
rs1447419172 169 dbSNP
rs558091710 179 dbSNP
rs780100547 181 dbSNP
rs745964043 185 dbSNP
rs898804651 186 dbSNP
rs181683674 194 dbSNP
rs1411491676 196 dbSNP
rs12043902 201 dbSNP
rs746918181 204 dbSNP
rs899179384 210 dbSNP
rs1055452614 215 dbSNP
rs995308016 227 dbSNP
rs1287554600 229 dbSNP
rs1415938888 239 dbSNP
rs1182328647 240 dbSNP
rs1460512658 249 dbSNP
rs539158536 251 dbSNP
rs1450674947 258 dbSNP
rs1047866391 259 dbSNP
rs886928588 261 dbSNP
rs1203030820 266 dbSNP
rs896017366 268 dbSNP
rs552507254 269 dbSNP
rs1020369820 272 dbSNP
rs965631959 274 dbSNP
rs1228183682 279 dbSNP
rs968040968 280 dbSNP
rs1000423159 281 dbSNP
rs572504974 295 dbSNP
rs1380689800 296 dbSNP
rs754809425 297 dbSNP
rs1435898457 307 dbSNP
rs964057619 308 dbSNP
rs10889677 310 dbSNP
rs1451388400 311 dbSNP
rs561623945 312 dbSNP
rs1029742973 315 dbSNP
rs954564885 322 dbSNP
rs1443871279 327 dbSNP
rs989170069 328 dbSNP
rs1190024285 333 dbSNP
rs987306497 334 dbSNP
rs907668074 335 dbSNP
rs1367476554 338 dbSNP
rs913682128 339 dbSNP
rs1489672358 340 dbSNP
rs1398203804 348 dbSNP
rs1266342101 351 dbSNP
rs1222195905 353 dbSNP
rs544274546 356 dbSNP
rs185937924 364 dbSNP
rs747823316 365 dbSNP
rs1300405558 369 dbSNP
rs143229126 371 dbSNP
rs1293746960 374 dbSNP
rs928163532 375 dbSNP
rs113768882 392 dbSNP
rs78691454 397 dbSNP
rs748856113 398 dbSNP
rs930660528 403 dbSNP
rs1246211594 409 dbSNP
rs540726271 410 dbSNP
rs34328426 413 dbSNP
rs1190592787 414 dbSNP
rs189218301 416 dbSNP
rs895568090 426 dbSNP
rs1489955659 427 dbSNP
rs1277425063 432 dbSNP
rs1206448446 447 dbSNP
rs1351112441 449 dbSNP
rs1249633536 453 dbSNP
rs1235501455 454 dbSNP
rs1008987515 456 dbSNP
rs1282853649 462 dbSNP
rs1404128381 473 dbSNP
rs1343361770 478 dbSNP
rs1309776662 486 dbSNP
rs1215220219 487 dbSNP
rs1040864947 491 dbSNP
rs949769898 497 dbSNP
rs1041880263 499 dbSNP
rs901019518 505 dbSNP
rs997142977 520 dbSNP
rs529289929 522 dbSNP
rs1479679612 528 dbSNP
rs1254340547 529 dbSNP
rs1195969677 530 dbSNP
rs1437822474 542 dbSNP
rs1249031992 544 dbSNP
rs768964853 552 dbSNP
rs1345744002 553 dbSNP
rs1262783732 556 dbSNP
rs370963031 562 dbSNP
rs148309045 563 dbSNP
rs1000878671 565 dbSNP
rs1290041681 572 dbSNP
rs1283886279 597 dbSNP
rs1442656140 605 dbSNP
rs1335140540 608 dbSNP
rs1164670670 610 dbSNP
rs1387278995 611 dbSNP
rs1397293115 616 dbSNP
rs1418175247 634 dbSNP
rs1488091747 635 dbSNP
rs531235794 640 dbSNP
rs770333569 644 dbSNP
rs569506935 645 dbSNP
rs531928137 650 dbSNP
rs1469922378 654 dbSNP
rs1383788402 668 dbSNP
rs966400681 674 dbSNP
rs181889805 687 dbSNP
rs1381705290 691 dbSNP
rs1443075980 692 dbSNP
rs184922499 693 dbSNP
rs1029628432 694 dbSNP
rs1476300333 696 dbSNP
rs1268968923 704 dbSNP
rs1224177943 707 dbSNP
rs955450779 726 dbSNP
rs1316945351 731 dbSNP
rs1349622812 745 dbSNP
rs761018723 747 dbSNP
rs1277734779 751 dbSNP
rs1015193088 758 dbSNP
rs764542940 762 dbSNP
rs370741274 766 dbSNP
rs973758142 768 dbSNP
rs552643057 772 dbSNP
rs113767217 773 dbSNP
rs1260741556 776 dbSNP
rs937048907 779 dbSNP
rs1318546531 792 dbSNP
rs1400519175 812 dbSNP
rs1383166599 818 dbSNP
rs1165521257 824 dbSNP
rs189684721 825 dbSNP
rs1385150917 828 dbSNP
rs796093881 830 dbSNP
rs1277095348 832 dbSNP
rs1451384184 833 dbSNP
rs71639472 835 dbSNP
rs1248895042 836 dbSNP
rs1215250001 837 dbSNP
rs1236270598 837 dbSNP
rs1186168287 838 dbSNP
rs1200815454 838 dbSNP
rs1248638438 838 dbSNP
rs1256327955 838 dbSNP
rs1270446215 838 dbSNP
rs1324302113 838 dbSNP
rs1325996836 838 dbSNP
rs1365571535 838 dbSNP
rs1366664835 838 dbSNP
rs1420267450 838 dbSNP
rs1425685450 838 dbSNP
rs1429538296 838 dbSNP
rs1474577113 838 dbSNP
rs372460431 838 dbSNP
rs571555676 838 dbSNP
rs760460078 838 dbSNP
rs761503893 838 dbSNP
rs765519788 838 dbSNP
rs1461295631 839 dbSNP
rs1184589556 840 dbSNP
rs1245418780 841 dbSNP
rs1438004138 842 dbSNP
rs1181370144 845 dbSNP
rs1364419969 848 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HEK293S
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in GSM1084043. RNA binding protein: AGO2. Condition:CLIP_arsenite_rep2 HITS-CLIP data was present in GSM1084064. RNA binding protein: AGO2. Condition:CLIP_noemetine_AbnovaAb HITS-CLIP data was present in GSM1084065. RNA binding protein: AGO2. Condition:CLIP_emetine_AbnovaAb HITS-CLIP data was present in GSM1084078. RNA binding protein: AGO2. Condition:CLIP_nohippuristanol_rep2_AbnovaAb ...

- Karginov FV; Hannon GJ, 2013, Genes & development.

Article - Karginov FV; Hannon GJ
- Genes & development, 2013
When adapting to environmental stress, cells attenuate and reprogram their translational output. In part, these altered translation profiles are established through changes in the interactions between RNA-binding proteins and mRNAs. The Argonaute 2 (Ago2)/microRNA (miRNA) machinery has been shown to participate in stress-induced translational up-regulation of a particular mRNA, CAT-1; however, a detailed, transcriptome-wide understanding of the involvement of Ago2 in the process has been lacking. Here, we profiled the overall changes in Ago2-mRNA interactions upon arsenite stress by cross-linking immunoprecipitation (CLIP) followed by high-throughput sequencing (CLIP-seq). Ago2 displayed a significant remodeling of its transcript occupancy, with the majority of 3' untranslated region (UTR) and coding sequence (CDS) sites exhibiting stronger interaction. Interestingly, target sites that were destined for release from Ago2 upon stress were depleted in miRNA complementarity signatures, suggesting an alternative mode of interaction. To compare the changes in Ago2-binding patterns across transcripts with changes in their translational states, we measured mRNA profiles on ribosome/polysome gradients by RNA sequencing (RNA-seq). Increased Ago2 occupancy correlated with stronger repression of translation for those mRNAs, as evidenced by a shift toward lighter gradient fractions upon stress, while release of Ago2 was associated with the limited number of transcripts that remained translated. Taken together, these data point to a role for Ago2 and the mammalian miRNAs in mediating the translational component of the stress response.
LinkOut: [PMID: 23824327]
CLIP-seq Support 1 for dataset GSM1084043
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_arsenite_rep2
Location of target site ENST00000347310.5 | 3UTR | GGUAGGUGGAUCACCUGAGGUCAGGAGU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM1084064
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_noemetine_AbnovaAb
Location of target site ENST00000347310.5 | 3UTR | GGUAGGUGGAUCACCUGAGGUCAGGAG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
CLIP-seq Support 3 for dataset GSM1084065
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_emetine_AbnovaAb
Location of target site ENST00000347310.5 | 3UTR | AGGUAGGUGGAUCACCUGAGGUCAGGA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
CLIP-seq Support 4 for dataset GSM1084078
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_nohippuristanol_rep2_AbnovaAb
Location of target site ENST00000347310.5 | 3UTR | AGGUAGGUGGAUCACCUGAGGUCAGGAGU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
GSE28260 Renal cortex and medulla 0.822 2.8e-4 0.746 1.7e-3 13 Click to see details
GSE19350 CNS germ cell tumors 0.771 1.7e-3 0.545 3.3e-2 12 Click to see details
GSE26953 Aortic valvular endothelial cells -0.517 4.8e-3 -0.624 5.6e-4 24 Click to see details
GSE34608 Pulmonary tuberculosis and sarcoidosis 0.494 1.3e-2 0.244 1.5e-1 20 Click to see details
GSE21687 Ependynoma primary tumors 0.172 8.7e-2 0.074 2.8e-1 64 Click to see details
GSE27834 Pluripotent stem cells -0.335 1.0e-1 -0.259 1.7e-1 16 Click to see details
GSE19536 Breast cancer 0.127 1.0e-1 0.077 2.2e-1 100 Click to see details
GSE28544 Breast cancer 0.222 1.5e-1 0.038 4.3e-1 24 Click to see details
GSE38974 Chronic obstructive pulmonary disease -0.195 1.8e-1 -0.272 9.4e-2 25 Click to see details
GSE19783 ER- ER- breast cancer 0.071 2.7e-1 -0.008 4.7e-1 79 Click to see details
GSE19783 ER+ ER+ breast cancer -0.127 3.0e-1 -0.113 3.2e-1 20 Click to see details
GSE14794 Lymphoblastoid cells 0.049 3.2e-1 0.014 4.5e-1 90 Click to see details
GSE21849 B cell lymphoma -0.076 3.5e-1 0.097 3.1e-1 29 Click to see details
GSE17306 Multiple myeloma -0.021 4.4e-1 -0.105 2.4e-1 49 Click to see details
GSE32688 Pancreatic cancer 0.016 4.7e-1 0.241 9.2e-2 32 Click to see details
GSE35602 Colorectal cancer stromal tissue -0.009 4.8e-1 -0.061 3.9e-1 25 Click to see details
GSE38226 Liver fibrosis -0.009 4.8e-1 -0.100 3.3e-1 21 Click to see details
GSE38226 Liver fibrosis -0.009 4.8e-1 -0.100 3.3e-1 21 Click to see details
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
194 hsa-miR-640 Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT097121 TNPO1 transportin 1 2 2
MIRT115090 ARIH1 ariadne RBR E3 ubiquitin protein ligase 1 2 4
MIRT204603 HSPE1-MOB4 HSPE1-MOB4 readthrough 2 8
MIRT204634 MOB4 MOB family member 4, phocein 2 8
MIRT344451 MTRNR2L1 MT-RNR2-like 1 2 2
MIRT405772 EIF5 eukaryotic translation initiation factor 5 2 2
MIRT445876 SENP6 SUMO1/sentrin specific peptidase 6 2 2
MIRT497418 FAM46A family with sequence similarity 46 member A 2 2
MIRT504394 HMX2 H6 family homeobox 2 2 4
MIRT504691 SLCO2B1 solute carrier organic anion transporter family member 2B1 2 8
MIRT512386 MTRNR2L3 MT-RNR2-like 3 2 6
MIRT513003 MAN1A2 mannosidase alpha class 1A member 2 2 2
MIRT513084 USP9X ubiquitin specific peptidase 9, X-linked 2 2
MIRT519122 ALDH2 aldehyde dehydrogenase 2 family (mitochondrial) 2 2
MIRT523836 F2RL1 F2R like trypsin receptor 1 2 2
MIRT565356 TMCC1 transmembrane and coiled-coil domain family 1 2 2
MIRT575895 Dis3 DIS3 homolog, exosome endoribonuclease and 3'-5' exoribonuclease 2 3
MIRT576894 Poteg POTE ankyrin domain family, member G 2 2
MIRT613780 RPS6 ribosomal protein S6 2 2
MIRT613934 POLR3A RNA polymerase III subunit A 2 2
MIRT614348 LOH12CR1 BLOC-1 related complex subunit 5 2 2
MIRT614534 NOA1 nitric oxide associated 1 2 2
MIRT617019 ZBTB8B zinc finger and BTB domain containing 8B 2 2
MIRT618247 MANEAL mannosidase endo-alpha like 2 2
MIRT619051 TTC4 tetratricopeptide repeat domain 4 2 2
MIRT619442 ZNF517 zinc finger protein 517 2 2
MIRT619723 FPR2 formyl peptide receptor 2 2 2
MIRT620179 TRIM72 tripartite motif containing 72 2 2
MIRT620370 ANKRD62 ankyrin repeat domain 62 2 2
MIRT621263 RTN2 reticulon 2 2 2
MIRT621463 APOH apolipoprotein H 2 2
MIRT621571 ZBTB43 zinc finger and BTB domain containing 43 2 2
MIRT621683 TSPYL1 TSPY like 1 2 2
MIRT622866 PDE7A phosphodiesterase 7A 2 2
MIRT624669 ARHGEF39 Rho guanine nucleotide exchange factor 39 2 2
MIRT625607 ZNF84 zinc finger protein 84 2 2
MIRT626111 IL23R interleukin 23 receptor 2 2
MIRT628380 CACNB2 calcium voltage-gated channel auxiliary subunit beta 2 2 2
MIRT628553 MELK maternal embryonic leucine zipper kinase 2 2
MIRT628671 C2orf72 chromosome 2 open reading frame 72 2 2
MIRT628747 TRPV2 transient receptor potential cation channel subfamily V member 2 2 2
MIRT628776 TMEM154 transmembrane protein 154 2 2
MIRT628918 ZNF430 zinc finger protein 430 2 2
MIRT629174 ALDOA aldolase, fructose-bisphosphate A 2 2
MIRT629209 C12orf66 chromosome 12 open reading frame 66 2 2
MIRT629267 SLC5A8 solute carrier family 5 member 8 2 2
MIRT629498 AS3MT arsenite methyltransferase 2 2
MIRT629665 USP1 ubiquitin specific peptidase 1 2 2
MIRT629760 STK25 serine/threonine kinase 25 2 2
MIRT630899 GATAD1 GATA zinc finger domain containing 1 2 2
MIRT631105 SLC15A2 solute carrier family 15 member 2 2 2
MIRT631112 ATCAY ATCAY, caytaxin 2 2
MIRT631450 DLEU1 deleted in lymphocytic leukemia 1 (non-protein coding) 2 2
MIRT631505 FFAR4 free fatty acid receptor 4 2 2
MIRT631580 ITGAL integrin subunit alpha L 2 2
MIRT631836 CMBL carboxymethylenebutenolidase homolog 2 2
MIRT632342 SWSAP1 SWIM-type zinc finger 7 associated protein 1 2 2
MIRT633214 ZNF584 zinc finger protein 584 2 2
MIRT633223 ZNF43 zinc finger protein 43 2 2
MIRT633480 ARIH2OS ariadne RBR E3 ubiquitin protein ligase 2 opposite strand 2 2
MIRT633511 LRRC27 leucine rich repeat containing 27 2 2
MIRT633615 CWF19L1 CWF19 like 1, cell cycle control (S. pombe) 2 2
MIRT633652 SLC28A1 solute carrier family 28 member 1 2 2
MIRT633677 ZNF576 zinc finger protein 576 2 2
MIRT634196 TMOD2 tropomodulin 2 2 4
MIRT634388 PLSCR1 phospholipid scramblase 1 2 2
MIRT635817 OPA3 OPA3, outer mitochondrial membrane lipid metabolism regulator 2 2
MIRT635962 TTC31 tetratricopeptide repeat domain 31 2 2
MIRT636114 YPEL1 yippee like 1 2 2
MIRT636164 TIMM8A translocase of inner mitochondrial membrane 8A 2 2
MIRT636768 CLUAP1 clusterin associated protein 1 2 2
MIRT637092 CXorf23 BCLAF1 and THRAP3 family member 3 2 2
MIRT637316 FAM9B family with sequence similarity 9 member B 2 2
MIRT637540 CHST6 carbohydrate sulfotransferase 6 2 2
MIRT637628 ZNF431 zinc finger protein 431 2 2
MIRT637826 CACNG8 calcium voltage-gated channel auxiliary subunit gamma 8 2 2
MIRT637945 IVD isovaleryl-CoA dehydrogenase 2 2
MIRT637968 IRF1 interferon regulatory factor 1 2 2
MIRT638321 RNF11 ring finger protein 11 2 2
MIRT638386 RAB11FIP1 RAB11 family interacting protein 1 2 2
MIRT639244 CRK CRK proto-oncogene, adaptor protein 2 2
MIRT642608 APOPT1 apoptogenic 1, mitochondrial 2 2
MIRT642793 SLC1A5 solute carrier family 1 member 5 2 2
MIRT643847 LACTB lactamase beta 2 4
MIRT644705 ZNF321P zinc finger protein 321, pseudogene 2 2
MIRT645148 DIS3 DIS3 homolog, exosome endoribonuclease and 3'-5' exoribonuclease 2 3
MIRT646671 CCDC69 coiled-coil domain containing 69 2 2
MIRT647780 ASB8 ankyrin repeat and SOCS box containing 8 2 2
MIRT648554 WDR92 WD repeat domain 92 2 2
MIRT648990 MRPL49 mitochondrial ribosomal protein L49 2 2
MIRT649099 KCNMB1 potassium calcium-activated channel subfamily M regulatory beta subunit 1 2 2
MIRT650141 ZNF426 zinc finger protein 426 2 2
MIRT650791 GSR glutathione-disulfide reductase 2 2
MIRT654967 PLEKHA2 pleckstrin homology domain containing A2 2 2
MIRT655099 PHLDA3 pleckstrin homology like domain family A member 3 2 2
MIRT655516 PAG1 phosphoprotein membrane anchor with glycosphingolipid microdomains 1 2 2
MIRT656289 METTL14 methyltransferase like 14 2 2
MIRT656497 MAP3K9 mitogen-activated protein kinase kinase kinase 9 2 2
MIRT657074 JPH2 junctophilin 2 2 2
MIRT657314 HOOK3 hook microtubule tethering protein 3 2 2
MIRT657419 HIF1AN hypoxia inducible factor 1 alpha subunit inhibitor 2 4
MIRT659032 DHTKD1 dehydrogenase E1 and transketolase domain containing 1 2 2
MIRT659535 CHCHD5 coiled-coil-helix-coiled-coil-helix domain containing 5 2 2
MIRT661532 NWD1 NACHT and WD repeat domain containing 1 2 2
MIRT662029 FUT2 fucosyltransferase 2 2 2
MIRT663206 DARS2 aspartyl-tRNA synthetase 2, mitochondrial 2 2
MIRT663357 ORAI2 ORAI calcium release-activated calcium modulator 2 2 2
MIRT663557 CCR6 C-C motif chemokine receptor 6 2 2
MIRT663650 POLM DNA polymerase mu 2 2
MIRT663694 ABHD17B abhydrolase domain containing 17B 2 2
MIRT664370 CYB5A cytochrome b5 type A 2 2
MIRT664783 LIAS lipoic acid synthetase 2 4
MIRT665561 TXNL1 thioredoxin like 1 2 2
MIRT665950 TAOK1 TAO kinase 1 2 2
MIRT667338 MSANTD3 Myb/SANT DNA binding domain containing 3 2 2
MIRT667804 ITIH5 inter-alpha-trypsin inhibitor heavy chain family member 5 2 2
MIRT668804 CYP20A1 cytochrome P450 family 20 subfamily A member 1 2 2
MIRT669470 ARPC2 actin related protein 2/3 complex subunit 2 2 2
MIRT669599 AGO3 argonaute 3, RISC catalytic component 2 2
MIRT669806 STOML1 stomatin like 1 2 2
MIRT669944 FBXL2 F-box and leucine rich repeat protein 2 2 2
MIRT670292 RBBP4 RB binding protein 4, chromatin remodeling factor 2 2
MIRT670381 EMP2 epithelial membrane protein 2 2 2
MIRT670481 DCUN1D2 defective in cullin neddylation 1 domain containing 2 2 2
MIRT670531 KIF1C kinesin family member 1C 2 4
MIRT670565 GLTP glycolipid transfer protein 2 2
MIRT670603 NPHP1 nephrocystin 1 2 2
MIRT670880 CYTIP cytohesin 1 interacting protein 2 2
MIRT670931 LIPG lipase G, endothelial type 2 2
MIRT671261 MTRNR2L5 MT-RNR2-like 5 2 2
MIRT671794 FLVCR1 feline leukemia virus subgroup C cellular receptor 1 2 2
MIRT671897 GBP4 guanylate binding protein 4 2 2
MIRT672000 SLC35F6 solute carrier family 35 member F6 2 4
MIRT672074 KIR3DX1 killer cell immunoglobulin like receptor, three Ig domains X1 2 2
MIRT672319 C9orf3 chromosome 9 open reading frame 3 2 2
MIRT672853 C22orf29 retrotransposon Gag like 10 2 2
MIRT673395 WNT7B Wnt family member 7B 2 2
MIRT673537 DEGS1 delta 4-desaturase, sphingolipid 1 2 2
MIRT674285 ZNF724P zinc finger protein 724 2 2
MIRT674494 TIRAP TIR domain containing adaptor protein 2 2
MIRT675460 NUBPL nucleotide binding protein like 2 2
MIRT675569 TRIP11 thyroid hormone receptor interactor 11 2 2
MIRT676068 TIMM50 translocase of inner mitochondrial membrane 50 2 2
MIRT676254 PBOV1 prostate and breast cancer overexpressed 1 2 2
MIRT676377 SEC24D SEC24 homolog D, COPII coat complex component 2 2
MIRT676758 SNX2 sorting nexin 2 2 2
MIRT676773 NPHS1 NPHS1, nephrin 2 2
MIRT676874 ENSA endosulfine alpha 2 2
MIRT676918 KLHDC8A kelch domain containing 8A 2 2
MIRT676944 S1PR3 sphingosine-1-phosphate receptor 3 2 2
MIRT676957 HFE hemochromatosis 2 2
MIRT676967 RNF19B ring finger protein 19B 2 2
MIRT676972 ZNF708 zinc finger protein 708 2 2
MIRT677042 ZNF34 zinc finger protein 34 2 2
MIRT677070 VMAC vimentin type intermediate filament associated coiled-coil protein 2 2
MIRT677093 MFSD11 major facilitator superfamily domain containing 11 2 4
MIRT677134 P2RX7 purinergic receptor P2X 7 2 2
MIRT677179 ZNF786 zinc finger protein 786 2 2
MIRT677228 C15orf40 chromosome 15 open reading frame 40 2 2
MIRT677320 PIGO phosphatidylinositol glycan anchor biosynthesis class O 2 2
MIRT677455 PDLIM3 PDZ and LIM domain 3 2 2
MIRT677809 MRPS10 mitochondrial ribosomal protein S10 2 2
MIRT677937 ZNF519 zinc finger protein 519 2 2
MIRT678063 UBN2 ubinuclein 2 2 4
MIRT678072 EIF2A eukaryotic translation initiation factor 2A 2 2
MIRT678252 FXN frataxin 2 2
MIRT678315 FBLIM1 filamin binding LIM protein 1 2 2
MIRT678367 XIAP X-linked inhibitor of apoptosis 2 4
MIRT678372 RNF115 ring finger protein 115 2 2
MIRT678410 ANKRD36 ankyrin repeat domain 36 2 2
MIRT678518 ZNF347 zinc finger protein 347 2 2
MIRT678566 CDK4 cyclin dependent kinase 4 2 2
MIRT678580 PPP1R3B protein phosphatase 1 regulatory subunit 3B 2 2
MIRT678820 PDE6A phosphodiesterase 6A 2 2
MIRT678917 XPOT exportin for tRNA 2 2
MIRT679217 MAN2A2 mannosidase alpha class 2A member 2 2 2
MIRT679437 C19orf52 translocase of inner mitochondrial membrane 29 2 2
MIRT679595 HILPDA hypoxia inducible lipid droplet associated 2 2
MIRT679755 TLR6 toll like receptor 6 2 2
MIRT679800 APOBEC3A apolipoprotein B mRNA editing enzyme catalytic subunit 3A 2 2
MIRT680057 CD96 CD96 molecule 2 2
MIRT680116 CCDC30 coiled-coil domain containing 30 2 4
MIRT680181 ZNF554 zinc finger protein 554 2 2
MIRT680439 WDR12 WD repeat domain 12 2 2
MIRT680789 ZNF578 zinc finger protein 578 2 2
MIRT692464 APEX2 apurinic/apyrimidinic endodeoxyribonuclease 2 2 2
MIRT702952 HIP1 huntingtin interacting protein 1 2 2
MIRT706016 ZSCAN2 zinc finger and SCAN domain containing 2 2 2
MIRT706032 F2R coagulation factor II thrombin receptor 2 2
MIRT706135 MTRNR2L10 MT-RNR2-like 10 2 2
MIRT706394 HAS2 hyaluronan synthase 2 2 2
MIRT713293 DCP2 decapping mRNA 2 2 2
MIRT716583 BRAP BRCA1 associated protein 2 2
MIRT720433 C19orf47 chromosome 19 open reading frame 47 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-640 Paclitaxel 36314 NSC125973 approved resistant High Ovarian Cancer tissue and cell line (SKOV3)
hsa-miR-640 Cetuximab resistant High Colon Cancer cell line
hsa-miR-640 Trametinib 11707110 NSC758246 approved resistant High Melanoma cell line (WM266) (1uM)
hsa-miR-640 Vemurafenib 42611257 NSC761431 approved resistant High Melanoma cell line (WM266) (1uM)
hsa-miR-640 Mitoxantrone 4212 NSC279836 approved resistant High Breast Cancer cell line (BT-20, BT-474, BT-549, CAMA-1, HCC1143, HCC1395, HCC1569, HCC1806, HCC-1937, HCC1954, HCC202, HCC38, HCC70, Hs578T, MCF-7, MDA-MB-175VII, MDA-MB-231, MDA-MB-361, MDA-MB-415, MDA-MB-436, MDA-MB-468, SKBR3, T47D, UACC812, EVSA-T, MPE-600 , SK-BR-
hsa-miR-640 Sorafenib 216239 NSC747971 approved sensitive Low Clear Cell Renal Cell Carcinoma cell line (786-O)
hsa-mir-640 Paclitaxel 36314 NSC125973 approved sensitive cell line (A2780)
hsa-mir-640 Cisplatin 5460033 NSC119875 approved sensitive cell line (A2780)
hsa-mir-640 Cisplatin 5460033 NSC119875 approved resistant cell line (BxPC3)
hsa-miR-640 Sunitinib 5329102 NSC750690 approved resistant tissue (CardB)
hsa-miR-640 Paclitaxel 36314 NSC125973 approved sensitive cell line (SKOV3)
hsa-miR-640 Tamoxifen 2733525 NSC180973 approved sensitive cell line (TamR8)
hsa-miR-640 Oxaliplatin 6857599 NSC266046 approved sensitive cell line (IGROV-1)
hsa-miR-640 Cisplatin 5460033 NSC119875 approved sensitive cell line (IGROV-1)
hsa-miR-640 Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)

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