pre-miRNA Information
pre-miRNA hsa-mir-4793   
Genomic Coordinates chr3: 48644194 - 48644280
Description Homo sapiens miR-4793 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-4793-3p
Sequence 58| UCUGCACUGUGAGUUGGCUGGCU |80
Evidence Experimental
Experiments Illumina
DRVs in miRNA
Mutant ID Mutant Position Mutant Source
COSM5899925 14 COSMIC
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs779602935 6 dbSNP
rs757908486 7 dbSNP
rs1422853760 15 dbSNP
rs377721296 23 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol SNRNP48   
Synonyms C6orf151, dJ336K20B.1, dJ512B11.2
Description small nuclear ribonucleoprotein U11/U12 subunit 48
Transcript NM_152551   
Expression
Putative miRNA Targets on SNRNP48
3'UTR of SNRNP48
(miRNA target sites are highlighted)
>SNRNP48|NM_152551|3'UTR
   1 ATGAAGTACTTGTACCTATATTAATTATGCTTACGCCATGATAACCAATATACAGATATATTAATTGGAATTCCTTTGCA
  81 TAGGAGAATGTTTTTATGATCTGTTTAGTGCTTATTATTTTTTTTATGATCTGTTTAGTGCTTATTATTTTCCAGTAAAT
 161 ATGCTTCAAACCATGAGTACACTATTAGGCCCTACAACTTTGTTTTCCTTATATTTTATTAGATGATTTGCTTCCTATAA
 241 CTGATGTTGTTTTGTTCGTTTTGCTAATATATGTATCTCAAAATTCTTTAAGTCAATATTTATCATATGTAAATTAAACA
 321 TGAATACATTCTCATCTTATAACTACATCTTATAAATAAGGCTAATAACCCTTAGAACACCACCTGCGGTTCTGTCCTCA
 401 CCCCAGTGGTGACTACTGTTTACCACTACACTGGTGAATTGTAGTAGGGAAAAACAATCTAAATATTGAAGAGGAATGGC
 481 CTAATTAAAATATGATGTAGTCATAGGATAGATTATTGTATTGGAGTTAAAAGAAATAATCTAGATCCATATTAACCTGG
 561 ATTGGTCTCAAAAACATAATGCTCAGTGAAAATAGCAAGTTGTAGAAAGTTATATACAAATTATATATATGTACAAAACA
 641 ATACTATGCATTCTCTATGGCTATATAATGTACGTAAATCTATTTTTAAAGGTTCAGAGGAATCCATACCAAAGTTCTAA
 721 CAGCGAGTAGGAGGTATAGATGAGAGATTAGGGGTGCAAATCAGGATTGGGAGGGTGGTCAGAGGGAACTTTAGCTTTAT
 801 CCATAACATTAATTTTTTTAAAAAATAAGGTCTTAATGTTTCATTTAATTTAAAATATACTGTCATGTTGTGTTTTGTAA
 881 ATCAACTGAATTGAGGTACTATTTACTTAGATTTATTGCACCCTTTTTACGTGTGTATTTTATTGGGTTTTGACAGATTC
 961 ATACCTCTGTGCAGCCACTATCACGATCAAGATACAAATATTTTCATTGCCCCCAAAATTCTCATACCCCCTTTCCCAAT
1041 CAATTCCTCTACCCCTAGCCCTAGGCAGCCACAGATTTGCTTTTGGTTACCGATTAGATCTATCCATTGTAGAATTCATG
1121 TAAATAGAATACTGTAGTATGTACTTTGCCTTCTTCCTCTCTGCAGATTTTTGAGATTGATCCCTGTGTGTCAGTTGTGC
1201 ATTTTTTTTGTTGCTGAGTAGTATGTTCTATCTTATGTCAGATCATTCACGTGAGACTTTGGCATGAAATGTTAAGCATC
1281 CGACATCTAAATAGCAATATTTTGAATACTGGAAACTCAGGTTAAAGATTTTGTTTCCAAGTAGAAATGAAATCTTATTA
1361 TTTTAATAAGTAGCTGACAGTGACAGAAAGATTGGATTTGGATCAGATTGGCTGTTAGGCTTCAGGTATGGGAAACAGCT
1441 CTCAGATTTATAAATTGGAAATCACCAGGTTACTTGCCAATATATAGTCATATTGCTGCCATTGTACTTAATTTCTAAAT
1521 ATATAAAATCCACATTTAAAAATTATAAAAGCAAGGACTTGGGAGTGACTGATGAATCATGAAATTGCTGCTTTTATAGA
1601 TCAAAACTACTTGAATCATCAGGAATTTCATATTTTTCATATTGTGTGACAACTTATAATTTTGTTTCAAATTGTGATTT
1681 CATTGATTTTACTAACTGGAAGGAAGAAGAGTAAAATTGGCATATTTAGGTTTTTTGTAGAAGAAAGATACAAGTGAAAA
1761 TTAGGAGTGGATTGGAGAAATTGGGGGGAAATAGAAGAGTACGGAGAAAGGAAGAGATTGAAAATGTTACCAGAGTTCTT
1841 TAAAGCTCACATTTTATAGTATCACTGCTACAAACTATTTAATGAAATGTGGCATCGGGTGAAAAGAGGCATTTGTTTGA
1921 TCCTTGAACGAATTAATCTCACGTACTTCCCTGTTTGTGGTTTGAGCCTTTCACTGGATGTGAGCTACTTGAGAGCAGGG
2001 TTTATGCCTTCATCAGCGTGACCCCTGTGCCTGCAGCCTCATAGGTGTTAATCTGTAATTTTAAATTTTGACAAAAGCAT
2081 TTTCACAGCCCTGCCACATAAGATCTAGTTTTTATTTCTAGAGTGCTGCTATGAATAATTACTATAGCTGCTGTCCATCT
2161 TGCCCATCCATTAAGGTACCTTCTCACAAACATTTCTAATCTACTGGCTGGAGTGCAGTGGTGCAGTCTGTAGCTCACTG
2241 CAGCCTCAAACTCCTAGGCTCAGGCGATCCTCTTGCCCTGGCCTCCCATGTAGCTGCAACTATAGGTGTGTGCCACTACA
2321 CCTGGCTAATGTTTTTAGTTTTTTAGAGATGGAGTCTTGCTCTGTTGCCTAGGCTGGTCTTGAACTCCTGGGCTCAGATG
2401 ATCCTCCTGTCCTCAGCCTCCCAAAATGCTGGGAGCCACCAGGCACCAGGTGTGATCTACCACACCTGTCTAAAAAGTAT
2481 GTATTTTTAAATTTTTTTGTAGAGACAGGATCTCACTATGTTCTCCAGCTGGTCTCAAGCTCCTGGCCTCGGCCTCCTAA
2561 AGTGCTGGGATTACAAGTGTGAGCCACTGTGCCTAGTCACTTTAATTGAGATATTGGCAAGTCAACTGCCATGCAGAGCC
2641 CAGGGCACTGGTTATATTCAGTAGGAAACTGAACTCAGCACTCAGAATTTTAAATTAAATCAATGATCTTCAAGTATTTG
2721 CCACTTTCGAGTACAGCTAATTGGATAATCTCAAACCCTTTAGTGAAAATATCTTAAATGCATTGAGAATATTTTCTAAT
2801 TACCTGTGTATGCTACAGTACAGACATTAATTCTATAAACATGTTCATAGGTCTTCCCCCTCGCCCCGCCCGTCTTCTAA
2881 GGGCATTTTCTGTTTCTTTTTAGTGAGTTCATGAATGTTTAACGGTTCTGGCGCAAAGCTTTCTTGCATTCTGAGCATAA
2961 AAATAATAAAACCCACTTATATTTGCTTGAGTGTGTTTACAAGTCAATTTCCTTTTATGTAGCTTGCTTTTTCATTTGCT
3041 ATAATTGATCCTGCAGGTGTGTGAATTATTAAACTAACGCTCTTTTAAACCACA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' ucGGUCGGUUGAGUG---UCACGUCu 5'
            |:| :| ||| :|   ||||||| 
Target 5' ttCTAATCTACTGGCTGGAGTGCAGt 3'
2194 - 2219 157.00 -16.40
2
miRNA  3' ucggUCGGUUGAGUGUCAC-GUCu 5'
              || :|:|| |||||| ||| 
Target 5' aataAG-TAGCTGACAGTGACAGa 3'
1365 - 1387 134.00 -18.60
3
miRNA  3' ucgGUCGG---UUGAGUGUCACGUCu 5'
             |||:|   |:||  || ||||| 
Target 5' gtgCAGTCTGTAGCT--CACTGCAGc 3'
2221 - 2244 128.00 -18.50
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN30120840 14 COSMIC
COSN31545394 16 COSMIC
COSN30488287 17 COSMIC
COSN30115618 36 COSMIC
COSN30487047 37 COSMIC
COSN30529186 42 COSMIC
COSN31579763 126 COSMIC
COSN17076210 259 COSMIC
COSN17815176 278 COSMIC
COSN17814381 305 COSMIC
COSN21769768 334 COSMIC
COSN17814304 337 COSMIC
COSN17814941 400 COSMIC
COSN29467202 690 COSMIC
COSN9807118 846 COSMIC
COSN20369301 931 COSMIC
COSN17815455 1006 COSMIC
COSN17814067 1042 COSMIC
COSN23336403 1093 COSMIC
COSN6332255 1709 COSMIC
COSN20102365 1819 COSMIC
COSN31778457 1893 COSMIC
COSN20102369 2026 COSMIC
COSN17814862 2054 COSMIC
COSN17816096 2380 COSMIC
COSN17815441 2404 COSMIC
COSN17813856 2458 COSMIC
COSN22111228 2524 COSMIC
COSN5637060 2781 COSMIC
COSN15951729 3000 COSMIC
COSN15953039 3000 COSMIC
COSN16324393 3069 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1035903478 4 dbSNP
rs766064206 9 dbSNP
rs1535434 12 dbSNP
rs777052194 13 dbSNP
rs1222242883 15 dbSNP
rs1286517403 17 dbSNP
rs1174568582 21 dbSNP
rs1477129648 22 dbSNP
rs1317582960 26 dbSNP
rs762330050 28 dbSNP
rs1271751254 29 dbSNP
rs776421206 31 dbSNP
rs7450372 35 dbSNP
rs750792178 36 dbSNP
rs1469369108 37 dbSNP
rs1175104329 39 dbSNP
rs763246882 53 dbSNP
rs979222601 56 dbSNP
rs924996398 61 dbSNP
rs1411155054 72 dbSNP
rs1300844034 82 dbSNP
rs966655151 84 dbSNP
rs556036317 90 dbSNP
rs1366523894 91 dbSNP
rs1387101342 97 dbSNP
rs1282479162 98 dbSNP
rs1400352642 99 dbSNP
rs1342346149 112 dbSNP
rs577907878 113 dbSNP
rs985086750 116 dbSNP
rs769091917 117 dbSNP
rs925151552 118 dbSNP
rs541364895 119 dbSNP
rs943930018 127 dbSNP
rs1424687152 129 dbSNP
rs1171886817 137 dbSNP
rs1479017702 142 dbSNP
rs747053762 144 dbSNP
rs1193577173 146 dbSNP
rs1483833381 161 dbSNP
rs769746543 162 dbSNP
rs553886798 163 dbSNP
rs1211617597 175 dbSNP
rs1237736582 186 dbSNP
rs572170653 187 dbSNP
rs41302887 191 dbSNP
rs193248865 196 dbSNP
rs905915658 206 dbSNP
rs1193276269 208 dbSNP
rs1001528123 209 dbSNP
rs1379800070 210 dbSNP
rs141176884 212 dbSNP
rs902059012 214 dbSNP
rs1358595177 222 dbSNP
rs929588252 225 dbSNP
rs1467314814 227 dbSNP
rs896099199 238 dbSNP
rs887934535 240 dbSNP
rs1010468785 245 dbSNP
rs1416556635 249 dbSNP
rs1183151652 254 dbSNP
rs185703876 255 dbSNP
rs968926499 258 dbSNP
rs1348932994 259 dbSNP
rs564355997 271 dbSNP
rs1033381703 287 dbSNP
rs532791268 290 dbSNP
rs547794940 297 dbSNP
rs1032096926 300 dbSNP
rs1314793048 303 dbSNP
rs953775583 306 dbSNP
rs577935345 309 dbSNP
rs985159844 314 dbSNP
rs748576998 316 dbSNP
rs749195381 317 dbSNP
rs41302889 334 dbSNP
rs894937058 334 dbSNP
rs1013166220 337 dbSNP
rs761372584 339 dbSNP
rs1434122931 341 dbSNP
rs1298217734 348 dbSNP
rs1458718633 356 dbSNP
rs1367319095 376 dbSNP
rs566227714 379 dbSNP
rs1163330226 381 dbSNP
rs972696841 388 dbSNP
rs770701686 389 dbSNP
rs931162100 405 dbSNP
rs1048698878 409 dbSNP
rs1539537 411 dbSNP
rs1322425703 412 dbSNP
rs1032695603 416 dbSNP
rs1266915481 417 dbSNP
rs1259218226 426 dbSNP
rs1219293584 434 dbSNP
rs957851415 442 dbSNP
rs1286918842 445 dbSNP
rs937411998 448 dbSNP
rs1375024661 460 dbSNP
rs1057083324 480 dbSNP
rs985331556 481 dbSNP
rs895838960 498 dbSNP
rs1387526052 509 dbSNP
rs1010623936 512 dbSNP
rs759119815 513 dbSNP
rs144976693 529 dbSNP
rs1292092917 543 dbSNP
rs1404944545 544 dbSNP
rs1250407403 545 dbSNP
rs569861070 549 dbSNP
rs1158776241 553 dbSNP
rs1181198789 557 dbSNP
rs775168151 558 dbSNP
rs1000409860 559 dbSNP
rs1377898925 563 dbSNP
rs553016056 564 dbSNP
rs1029158878 567 dbSNP
rs953806422 572 dbSNP
rs1490178600 576 dbSNP
rs867006754 576 dbSNP
rs1166418562 583 dbSNP
rs923316565 589 dbSNP
rs151118523 602 dbSNP
rs1456482859 606 dbSNP
rs1321056027 609 dbSNP
rs1390729826 621 dbSNP
rs1047964145 622 dbSNP
rs763206782 622 dbSNP
rs965088691 628 dbSNP
rs942199559 631 dbSNP
rs1299691139 643 dbSNP
rs1404696764 645 dbSNP
rs972769173 647 dbSNP
rs1055222870 648 dbSNP
rs894864881 649 dbSNP
rs1382153544 658 dbSNP
rs1287765018 660 dbSNP
rs918548526 665 dbSNP
rs952729189 668 dbSNP
rs1305101708 671 dbSNP
rs190664839 674 dbSNP
rs570762370 679 dbSNP
rs1261202537 684 dbSNP
rs777316458 691 dbSNP
rs1484387331 692 dbSNP
rs1006697321 694 dbSNP
rs1460270004 699 dbSNP
rs1223090548 701 dbSNP
rs1057158244 709 dbSNP
rs1209949994 722 dbSNP
rs1217396030 724 dbSNP
rs1018133639 725 dbSNP
rs917297899 726 dbSNP
rs946071794 743 dbSNP
rs1238587928 746 dbSNP
rs964768630 750 dbSNP
rs1042108460 765 dbSNP
rs1483278904 767 dbSNP
rs1403660095 772 dbSNP
rs1334320747 785 dbSNP
rs1468908110 787 dbSNP
rs1400783899 790 dbSNP
rs1412865233 790 dbSNP
rs1172541636 793 dbSNP
rs1474425848 804 dbSNP
rs1183138639 806 dbSNP
rs904808273 807 dbSNP
rs1188104948 808 dbSNP
rs1000844132 813 dbSNP
rs140855940 813 dbSNP
rs923380678 820 dbSNP
rs976176682 820 dbSNP
rs1472093815 821 dbSNP
rs1260467098 831 dbSNP
rs1197104485 839 dbSNP
rs762376772 839 dbSNP
rs1159466381 843 dbSNP
rs1339365473 847 dbSNP
rs950738102 848 dbSNP
rs1247575742 849 dbSNP
rs1050608489 853 dbSNP
rs181490042 854 dbSNP
rs1451543833 855 dbSNP
rs909425050 858 dbSNP
rs1009042961 859 dbSNP
rs1408020881 865 dbSNP
rs1450255992 866 dbSNP
rs1296588664 874 dbSNP
rs1163772270 875 dbSNP
rs1350085157 878 dbSNP
rs553797756 881 dbSNP
rs1383530184 883 dbSNP
rs1183057477 902 dbSNP
rs1019384413 906 dbSNP
rs916766012 907 dbSNP
rs572190629 911 dbSNP
rs1437646478 928 dbSNP
rs2757598 931 dbSNP
rs1025717486 932 dbSNP
rs1244563286 938 dbSNP
rs1279917641 941 dbSNP
rs1353735642 944 dbSNP
rs185384179 948 dbSNP
rs1211603086 955 dbSNP
rs1439482477 957 dbSNP
rs766540129 958 dbSNP
rs141078418 961 dbSNP
rs1388514196 963 dbSNP
rs1363602329 965 dbSNP
rs958540078 973 dbSNP
rs1420409825 979 dbSNP
rs1382206992 981 dbSNP
rs893699022 985 dbSNP
rs992581742 986 dbSNP
rs1247720069 989 dbSNP
rs543554211 1002 dbSNP
rs77700971 1007 dbSNP
rs1268775813 1010 dbSNP
rs1217937809 1011 dbSNP
rs1253557514 1012 dbSNP
rs946117062 1013 dbSNP
rs1221767156 1020 dbSNP
rs965195975 1029 dbSNP
rs867735140 1032 dbSNP
rs796798772 1034 dbSNP
rs1171820421 1036 dbSNP
rs1302508281 1038 dbSNP
rs1400463494 1044 dbSNP
rs1362554699 1047 dbSNP
rs1316300257 1048 dbSNP
rs1400417611 1050 dbSNP
rs1425775325 1052 dbSNP
rs925929202 1054 dbSNP
rs1168245999 1056 dbSNP
rs935995531 1057 dbSNP
rs950862638 1058 dbSNP
rs1369953625 1064 dbSNP
rs1428945238 1066 dbSNP
rs1050681306 1067 dbSNP
rs755092962 1072 dbSNP
rs889340628 1075 dbSNP
rs1212996107 1079 dbSNP
rs1446115927 1085 dbSNP
rs1009107278 1086 dbSNP
rs1040554158 1090 dbSNP
rs1205133095 1092 dbSNP
rs1278916456 1092 dbSNP
rs983435301 1093 dbSNP
rs1410546550 1100 dbSNP
rs370990360 1101 dbSNP
rs900948209 1119 dbSNP
rs1343917540 1123 dbSNP
rs1436201749 1137 dbSNP
rs188549910 1144 dbSNP
rs781247958 1145 dbSNP
rs1359767288 1150 dbSNP
rs541692294 1152 dbSNP
rs1347598040 1154 dbSNP
rs952495397 1157 dbSNP
rs1468374292 1159 dbSNP
rs559820554 1160 dbSNP
rs1213260379 1176 dbSNP
rs1027952924 1177 dbSNP
rs991013232 1186 dbSNP
rs1034232504 1190 dbSNP
rs1417962959 1202 dbSNP
rs916857974 1202 dbSNP
rs958613317 1204 dbSNP
rs992654877 1213 dbSNP
rs1276291101 1216 dbSNP
rs530311394 1224 dbSNP
rs1237488711 1230 dbSNP
rs1185068023 1231 dbSNP
rs949571057 1234 dbSNP
rs1199012249 1237 dbSNP
rs749419898 1244 dbSNP
rs1047005564 1245 dbSNP
rs1197887932 1249 dbSNP
rs867018081 1251 dbSNP
rs17339296 1252 dbSNP
rs1379997440 1270 dbSNP
rs1317229970 1272 dbSNP
rs1450809802 1277 dbSNP
rs1186550642 1280 dbSNP
rs1332521489 1282 dbSNP
rs569924191 1283 dbSNP
rs1353077855 1286 dbSNP
rs150250166 1306 dbSNP
rs552276028 1307 dbSNP
rs1053435322 1311 dbSNP
rs1413963296 1317 dbSNP
rs1184899418 1328 dbSNP
rs181389875 1329 dbSNP
rs935996938 1339 dbSNP
rs1242124929 1341 dbSNP
rs1178816297 1342 dbSNP
rs893460239 1343 dbSNP
rs1230903331 1353 dbSNP
rs534742265 1355 dbSNP
rs1203800169 1366 dbSNP
rs910838782 1370 dbSNP
rs2806218 1381 dbSNP
rs1243842986 1385 dbSNP
rs1358756372 1385 dbSNP
rs901128748 1396 dbSNP
rs1393294443 1399 dbSNP
rs1371651101 1407 dbSNP
rs565884428 1409 dbSNP
rs536443772 1412 dbSNP
rs929460853 1415 dbSNP
rs1333152854 1420 dbSNP
rs138906484 1422 dbSNP
rs1047259241 1429 dbSNP
rs888163825 1432 dbSNP
rs1297486148 1446 dbSNP
rs576309320 1451 dbSNP
rs1384038524 1455 dbSNP
rs1228485729 1456 dbSNP
rs1158884755 1463 dbSNP
rs1299243638 1467 dbSNP
rs745631563 1469 dbSNP
rs1353656931 1481 dbSNP
rs1420487251 1487 dbSNP
rs1033969179 1488 dbSNP
rs894426677 1490 dbSNP
rs148976933 1497 dbSNP
rs1176376105 1507 dbSNP
rs558399999 1520 dbSNP
rs1270989547 1525 dbSNP
rs1220105566 1531 dbSNP
rs1453064596 1542 dbSNP
rs1206642373 1547 dbSNP
rs1024203147 1552 dbSNP
rs967631725 1555 dbSNP
rs1490208039 1575 dbSNP
rs977250337 1580 dbSNP
rs1450072184 1594 dbSNP
rs1190451215 1596 dbSNP
rs1005395670 1600 dbSNP
rs1306786817 1607 dbSNP
rs1220160166 1609 dbSNP
rs1347724486 1621 dbSNP
rs1301874172 1624 dbSNP
rs1404810398 1627 dbSNP
rs1472529352 1631 dbSNP
rs1033515816 1638 dbSNP
rs957432093 1640 dbSNP
rs775328274 1643 dbSNP
rs963335152 1645 dbSNP
rs1157852577 1657 dbSNP
rs990813604 1658 dbSNP
rs1431069200 1660 dbSNP
rs1023804411 1669 dbSNP
rs1389996099 1671 dbSNP
rs971395935 1684 dbSNP
rs1206941920 1687 dbSNP
rs1485045955 1695 dbSNP
rs62388102 1700 dbSNP
rs1313556545 1704 dbSNP
rs1260388932 1710 dbSNP
rs1044764 1712 dbSNP
rs910534843 1720 dbSNP
rs1281755421 1727 dbSNP
rs935540055 1731 dbSNP
rs1341643671 1732 dbSNP
rs1284401187 1735 dbSNP
rs944664519 1738 dbSNP
rs1226332757 1739 dbSNP
rs976753247 1739 dbSNP
rs919481676 1747 dbSNP
rs942342260 1749 dbSNP
rs1465188497 1750 dbSNP
rs1210470806 1766 dbSNP
rs929466234 1768 dbSNP
rs1408103451 1783 dbSNP
rs371049493 1787 dbSNP
rs1441898265 1788 dbSNP
rs901054124 1789 dbSNP
rs559986722 1800 dbSNP
rs1261051618 1802 dbSNP
rs574750231 1803 dbSNP
rs542119070 1804 dbSNP
rs1055412261 1807 dbSNP
rs1261703429 1815 dbSNP
rs66604210 1817 dbSNP
rs71641689 1817 dbSNP
rs749323375 1817 dbSNP
rs768347587 1818 dbSNP
rs201866260 1828 dbSNP
rs200335855 1829 dbSNP
rs1046867922 1831 dbSNP
rs886924128 1834 dbSNP
rs1294215778 1837 dbSNP
rs1013847708 1842 dbSNP
rs1301552314 1856 dbSNP
rs1024651959 1857 dbSNP
rs903063703 1862 dbSNP
rs1005413132 1878 dbSNP
rs999136069 1884 dbSNP
rs185230707 1885 dbSNP
rs1396896461 1888 dbSNP
rs190039964 1897 dbSNP
rs899294746 1900 dbSNP
rs34167194 1902 dbSNP
rs1460353909 1903 dbSNP
rs957463349 1904 dbSNP
rs1007664525 1910 dbSNP
rs1446721861 1910 dbSNP
rs1017671749 1911 dbSNP
rs1023606329 1920 dbSNP
rs966040940 1931 dbSNP
rs182359296 1932 dbSNP
rs982754085 1941 dbSNP
rs1339300973 1942 dbSNP
rs564451712 1943 dbSNP
rs1031282257 1944 dbSNP
rs528486649 1946 dbSNP
rs187016909 1947 dbSNP
rs1230058868 1948 dbSNP
rs1451379965 1954 dbSNP
rs1246968271 1963 dbSNP
rs1044767 1964 dbSNP
rs1344309896 1966 dbSNP
rs942432323 1969 dbSNP
rs760379465 1975 dbSNP
rs1395652527 1976 dbSNP
rs1201091735 1979 dbSNP
rs1426655671 1985 dbSNP
rs536506862 1990 dbSNP
rs145733713 1998 dbSNP
rs1482116024 1999 dbSNP
rs933694986 2000 dbSNP
rs138314912 2004 dbSNP
rs1270265179 2012 dbSNP
rs41302891 2013 dbSNP
rs1490699380 2018 dbSNP
rs1038176103 2019 dbSNP
rs200751993 2021 dbSNP
rs10717454 2022 dbSNP
rs796361220 2022 dbSNP
rs1350899145 2027 dbSNP
rs1174446661 2038 dbSNP
rs1236639245 2045 dbSNP
rs1377553571 2050 dbSNP
rs1303691140 2078 dbSNP
rs1466953104 2079 dbSNP
rs949757556 2088 dbSNP
rs1363852274 2089 dbSNP
rs1302621899 2090 dbSNP
rs1012304889 2092 dbSNP
rs1174833102 2103 dbSNP
rs1045401760 2106 dbSNP
rs906516341 2110 dbSNP
rs1003583202 2125 dbSNP
rs1307003665 2127 dbSNP
rs1430341823 2132 dbSNP
rs1350773705 2142 dbSNP
rs773473921 2150 dbSNP
rs1392918809 2152 dbSNP
rs879539649 2155 dbSNP
rs1479737697 2161 dbSNP
rs1266237760 2164 dbSNP
rs1299002872 2166 dbSNP
rs1220153974 2167 dbSNP
rs543206828 2171 dbSNP
rs1447025183 2179 dbSNP
rs763426753 2181 dbSNP
rs1202928446 2190 dbSNP
rs1328238769 2195 dbSNP
rs903124847 2196 dbSNP
rs1225347441 2198 dbSNP
rs766701373 2199 dbSNP
rs998762153 2202 dbSNP
rs576904374 2205 dbSNP
rs1330309908 2210 dbSNP
rs1328236340 2211 dbSNP
rs1412423034 2213 dbSNP
rs1316507339 2215 dbSNP
rs1400285375 2228 dbSNP
rs1054348059 2235 dbSNP
rs1407379723 2241 dbSNP
rs1031670508 2247 dbSNP
rs2806217 2250 dbSNP
rs755183113 2252 dbSNP
rs1017711017 2255 dbSNP
rs1190649165 2259 dbSNP
rs966110380 2260 dbSNP
rs1464157986 2265 dbSNP
rs1263573292 2266 dbSNP
rs61336291 2267 dbSNP
rs1215022593 2271 dbSNP
rs963764990 2275 dbSNP
rs574116422 2298 dbSNP
rs542084282 2300 dbSNP
rs1430368042 2301 dbSNP
rs975139366 2301 dbSNP
rs1484197522 2303 dbSNP
rs1383765651 2311 dbSNP
rs563674771 2318 dbSNP
rs951063536 2322 dbSNP
rs1450948167 2325 dbSNP
rs1405721497 2326 dbSNP
rs142775421 2332 dbSNP
rs1412116757 2340 dbSNP
rs1421103925 2349 dbSNP
rs1165618484 2350 dbSNP
rs1189828616 2355 dbSNP
rs1243399116 2360 dbSNP
rs749884391 2368 dbSNP
rs909444251 2372 dbSNP
rs546128163 2375 dbSNP
rs564597427 2376 dbSNP
rs922405102 2402 dbSNP
rs1267031476 2403 dbSNP
rs1434150603 2407 dbSNP
rs1201585861 2409 dbSNP
rs959533934 2423 dbSNP
rs990913206 2433 dbSNP
rs778858179 2453 dbSNP
rs1309185148 2455 dbSNP
rs915693427 2463 dbSNP
rs949824532 2464 dbSNP
rs1360202443 2466 dbSNP
rs1317429769 2468 dbSNP
rs1243976258 2470 dbSNP
rs1378973740 2471 dbSNP
rs1299095687 2472 dbSNP
rs982508238 2473 dbSNP
rs1353246694 2484 dbSNP
rs1328714232 2489 dbSNP
rs528540029 2492 dbSNP
rs908414904 2500 dbSNP
rs370139376 2501 dbSNP
rs1385243444 2505 dbSNP
rs1038145852 2507 dbSNP
rs1442382117 2508 dbSNP
rs924315971 2511 dbSNP
rs1412888554 2526 dbSNP
rs146050206 2533 dbSNP
rs1481606766 2535 dbSNP
rs934299417 2537 dbSNP
rs915726291 2539 dbSNP
rs948585102 2551 dbSNP
rs1490537201 2552 dbSNP
rs1054377899 2560 dbSNP
rs1220620662 2563 dbSNP
rs1045550796 2575 dbSNP
rs893026166 2579 dbSNP
rs374343525 2584 dbSNP
rs943218264 2589 dbSNP
rs1038884391 2590 dbSNP
rs901947744 2594 dbSNP
rs1003916452 2597 dbSNP
rs1288276046 2606 dbSNP
rs760131474 2608 dbSNP
rs1406029283 2616 dbSNP
rs1052452994 2619 dbSNP
rs562037385 2620 dbSNP
rs1304431025 2621 dbSNP
rs1456107168 2632 dbSNP
rs1389695183 2643 dbSNP
rs529338209 2644 dbSNP
rs997597540 2648 dbSNP
rs1420655639 2661 dbSNP
rs767907376 2664 dbSNP
rs41302893 2665 dbSNP
rs1011179218 2666 dbSNP
rs1480719165 2666 dbSNP
rs554897309 2686 dbSNP
rs1220321595 2693 dbSNP
rs964194056 2697 dbSNP
rs1006137239 2704 dbSNP
rs997051900 2709 dbSNP
rs1016477408 2712 dbSNP
rs1267879616 2714 dbSNP
rs959605647 2729 dbSNP
rs990985296 2730 dbSNP
rs758306325 2735 dbSNP
rs779990303 2742 dbSNP
rs1366202341 2744 dbSNP
rs1289096069 2751 dbSNP
rs1455007551 2755 dbSNP
rs1386267433 2756 dbSNP
rs1158101474 2757 dbSNP
rs1470290028 2758 dbSNP
rs1197139761 2760 dbSNP
rs76573010 2761 dbSNP
rs971276676 2763 dbSNP
rs572019171 2774 dbSNP
rs962377700 2782 dbSNP
rs1247843808 2788 dbSNP
rs1204692103 2790 dbSNP
rs981234182 2799 dbSNP
rs973948564 2804 dbSNP
rs1219599428 2807 dbSNP
rs78382609 2812 dbSNP
rs1488999833 2817 dbSNP
rs1295664449 2825 dbSNP
rs948555784 2826 dbSNP
rs1362550651 2836 dbSNP
rs1319410973 2842 dbSNP
rs981302577 2844 dbSNP
rs1407940795 2849 dbSNP
rs1170758909 2854 dbSNP
rs116102204 2855 dbSNP
rs989808509 2863 dbSNP
rs914532618 2864 dbSNP
rs1449456083 2866 dbSNP
rs1189793061 2868 dbSNP
rs534391056 2869 dbSNP
rs1184402939 2871 dbSNP
rs553049120 2872 dbSNP
rs1038915507 2873 dbSNP
rs146960918 2887 dbSNP
rs4212 2887 dbSNP
rs57510733 2887 dbSNP
rs1251445748 2906 dbSNP
rs1458190950 2908 dbSNP
rs901688961 2911 dbSNP
rs933125237 2924 dbSNP
rs1044761 2933 dbSNP
rs1384783285 2940 dbSNP
rs1434204586 2947 dbSNP
rs886487505 2958 dbSNP
rs1395448706 2971 dbSNP
rs192383425 2980 dbSNP
rs1299752566 2981 dbSNP
rs1427902486 2983 dbSNP
rs1389585140 2991 dbSNP
rs1016213768 3001 dbSNP
rs1164507063 3008 dbSNP
rs1446640400 3014 dbSNP
rs1367158574 3017 dbSNP
rs1364111001 3022 dbSNP
rs1029838214 3042 dbSNP
rs1226731824 3043 dbSNP
rs1253294375 3043 dbSNP
rs895424026 3045 dbSNP
rs1312244245 3049 dbSNP
rs890846829 3051 dbSNP
rs1322625781 3058 dbSNP
rs1222821649 3064 dbSNP
rs141802924 3079 dbSNP
rs150585679 3080 dbSNP
rs962346629 3081 dbSNP
rs1336055981 3083 dbSNP
rs1025626190 3087 dbSNP
rs115197614 3090 dbSNP
rs1370076839 3093 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HEK293S
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in GSM1084078. RNA binding protein: AGO2. Condition:CLIP_nohippuristanol_rep2_AbnovaAb ...

- Karginov FV; Hannon GJ, 2013, Genes & development.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' ucggucGGUUGAGUGUCACGUCu 5'
                |:::|| : ||||||| 
Target 5' -----aCUGGCU-GGAGUGCAGu 3'
1 - 17
Article - Karginov FV; Hannon GJ
- Genes & development, 2013
When adapting to environmental stress, cells attenuate and reprogram their translational output. In part, these altered translation profiles are established through changes in the interactions between RNA-binding proteins and mRNAs. The Argonaute 2 (Ago2)/microRNA (miRNA) machinery has been shown to participate in stress-induced translational up-regulation of a particular mRNA, CAT-1; however, a detailed, transcriptome-wide understanding of the involvement of Ago2 in the process has been lacking. Here, we profiled the overall changes in Ago2-mRNA interactions upon arsenite stress by cross-linking immunoprecipitation (CLIP) followed by high-throughput sequencing (CLIP-seq). Ago2 displayed a significant remodeling of its transcript occupancy, with the majority of 3' untranslated region (UTR) and coding sequence (CDS) sites exhibiting stronger interaction. Interestingly, target sites that were destined for release from Ago2 upon stress were depleted in miRNA complementarity signatures, suggesting an alternative mode of interaction. To compare the changes in Ago2-binding patterns across transcripts with changes in their translational states, we measured mRNA profiles on ribosome/polysome gradients by RNA sequencing (RNA-seq). Increased Ago2 occupancy correlated with stronger repression of translation for those mRNAs, as evidenced by a shift toward lighter gradient fractions upon stress, while release of Ago2 was associated with the limited number of transcripts that remained translated. Taken together, these data point to a role for Ago2 and the mammalian miRNAs in mediating the translational component of the stress response.
LinkOut: [PMID: 23824327]
CLIP-seq Support 1 for dataset GSM4903833
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_a
Location of target site NM_152551 | 3UTR | UGGCUGGAGUGCAGUGGUGCAGUCUGUAGCUCACUGCAGCCUCAAACUCCUAGGCUCAGGCGAUCCUCUUGCCCUGGCCUCCCAUGUAGCUGCAACUAUAG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM4903835
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_c
Location of target site NM_152551 | 3UTR | UCUACUGGCUGGAGUGCA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 3 for dataset GSM1084078
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_nohippuristanol_rep2_AbnovaAb
Location of target site ENST00000342415.5 | 3UTR | ACUGGCUGGAGUGCAGUGGUGC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
296 hsa-miR-4793-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT092332 EDEM1 ER degradation enhancing alpha-mannosidase like protein 1 2 6
MIRT131237 ATG2A autophagy related 2A 2 2
MIRT145926 ANKFY1 ankyrin repeat and FYVE domain containing 1 2 2
MIRT206559 SOCS5 suppressor of cytokine signaling 5 2 8
MIRT226455 TP53INP1 tumor protein p53 inducible nuclear protein 1 2 2
MIRT337662 ZNF695 zinc finger protein 695 2 2
MIRT405828 SIX4 SIX homeobox 4 2 2
MIRT455113 RILPL1 Rab interacting lysosomal protein like 1 2 2
MIRT456756 TMEM239 transmembrane protein 239 2 4
MIRT457974 RGS9BP regulator of G protein signaling 9 binding protein 2 2
MIRT458173 LYRM4 LYR motif containing 4 2 4
MIRT458245 SLC9A7 solute carrier family 9 member A7 2 2
MIRT466145 TMEM120B transmembrane protein 120B 2 2
MIRT474981 KATNAL1 katanin catalytic subunit A1 like 1 2 2
MIRT475601 HMGB2 high mobility group box 2 2 4
MIRT480759 BMP3 bone morphogenetic protein 3 2 4
MIRT481156 AVL9 AVL9 cell migration associated 2 2
MIRT482155 AK2 adenylate kinase 2 2 2
MIRT488386 VAV3 vav guanine nucleotide exchange factor 3 2 6
MIRT496575 KIF18B kinesin family member 18B 2 2
MIRT498411 TXNDC16 thioredoxin domain containing 16 2 4
MIRT504547 ZNF417 zinc finger protein 417 2 6
MIRT505417 TCF7L2 transcription factor 7 like 2 2 2
MIRT509349 ALDH9A1 aldehyde dehydrogenase 9 family member A1 2 6
MIRT512164 CD164 CD164 molecule 2 6
MIRT517238 PRIM1 DNA primase subunit 1 2 2
MIRT518671 KCNMB1 potassium calcium-activated channel subfamily M regulatory beta subunit 1 2 2
MIRT519298 MLH1 mutL homolog 1 2 2
MIRT523662 FOSL2 FOS like 2, AP-1 transcription factor subunit 2 2
MIRT525452 GPATCH2L G-patch domain containing 2 like 2 2
MIRT539847 ZNF766 zinc finger protein 766 2 2
MIRT540076 SSH3 slingshot protein phosphatase 3 2 2
MIRT540320 PIGR polymeric immunoglobulin receptor 2 2
MIRT540548 MAGI3 membrane associated guanylate kinase, WW and PDZ domain containing 3 2 2
MIRT540759 UTP6 UTP6, small subunit processome component 2 2
MIRT541545 HIATL2 major facilitator superfamily domain containing 14C 2 2
MIRT541553 SLC35E1 solute carrier family 35 member E1 2 2
MIRT541666 ATP8B3 ATPase phospholipid transporting 8B3 2 4
MIRT541722 TFDP2 transcription factor Dp-2 2 2
MIRT541800 DUSP28 dual specificity phosphatase 28 2 2
MIRT541816 SMU1 DNA replication regulator and spliceosomal factor 2 2
MIRT541907 VWA7 von Willebrand factor A domain containing 7 2 2
MIRT542154 UGDH UDP-glucose 6-dehydrogenase 2 2
MIRT542207 C14orf142 GON7, KEOPS complex subunit homolog 2 2
MIRT542233 FUT9 fucosyltransferase 9 2 2
MIRT542320 SERPING1 serpin family G member 1 2 2
MIRT542369 PAICS phosphoribosylaminoimidazole carboxylase and phosphoribosylaminoimidazolesuccinocarboxamide synthase 2 2
MIRT542476 APOC3 apolipoprotein C3 2 2
MIRT542641 TIMM8A translocase of inner mitochondrial membrane 8A 2 2
MIRT542660 TAF11 TATA-box binding protein associated factor 11 2 2
MIRT542749 PRRG4 proline rich and Gla domain 4 2 4
MIRT542789 PLEKHA3 pleckstrin homology domain containing A3 2 2
MIRT545442 FGFRL1 fibroblast growth factor receptor like 1 2 2
MIRT546206 TOR1AIP2 torsin 1A interacting protein 2 2 2
MIRT552270 RAB3D RAB3D, member RAS oncogene family 2 2
MIRT552655 ZADH2 zinc binding alcohol dehydrogenase domain containing 2 2 2
MIRT554134 SMARCA5 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 2 2
MIRT556795 KIAA1958 KIAA1958 2 2
MIRT564762 ZHX3 zinc fingers and homeoboxes 3 2 2
MIRT569428 STX7 syntaxin 7 2 2
MIRT573245 ZBTB46 zinc finger and BTB domain containing 46 2 2
MIRT607390 LANCL3 LanC like 3 2 2
MIRT607430 NOTCH2NL notch 2 N-terminal like 2 2
MIRT607452 ZNF543 zinc finger protein 543 2 2
MIRT607580 TANGO2 transport and golgi organization 2 homolog 2 2
MIRT607748 ANGPT4 angiopoietin 4 2 2
MIRT607907 SPRYD4 SPRY domain containing 4 2 2
MIRT608703 GMPR guanosine monophosphate reductase 2 2
MIRT612127 NDUFA10 NADH:ubiquinone oxidoreductase subunit A10 2 2
MIRT612786 MAP3K9 mitogen-activated protein kinase kinase kinase 9 2 4
MIRT616692 LPL lipoprotein lipase 2 2
MIRT617045 ZNF610 zinc finger protein 610 2 2
MIRT617091 ZNF43 zinc finger protein 43 2 2
MIRT617314 MBOAT1 membrane bound O-acyltransferase domain containing 1 2 2
MIRT617355 MELK maternal embryonic leucine zipper kinase 2 2
MIRT617486 ALG9 ALG9, alpha-1,2-mannosyltransferase 2 2
MIRT617579 NDUFB5 NADH:ubiquinone oxidoreductase subunit B5 2 2
MIRT617669 RSRC1 arginine and serine rich coiled-coil 1 2 2
MIRT617722 TRAPPC2 trafficking protein particle complex 2 2 4
MIRT617893 PTCHD3 patched domain containing 3 2 2
MIRT617982 ZNF234 zinc finger protein 234 2 4
MIRT618434 MYLK3 myosin light chain kinase 3 2 4
MIRT618732 HIST1H2AH histone cluster 1 H2A family member h 2 2
MIRT619045 CASS4 Cas scaffolding protein family member 4 2 2
MIRT619573 ATAT1 alpha tubulin acetyltransferase 1 2 4
MIRT619671 CYP1A2 cytochrome P450 family 1 subfamily A member 2 2 2
MIRT619887 ABHD17B abhydrolase domain containing 17B 2 2
MIRT620519 SNRPD1 small nuclear ribonucleoprotein D1 polypeptide 2 4
MIRT620535 AVPR1A arginine vasopressin receptor 1A 2 2
MIRT620996 C19orf52 translocase of inner mitochondrial membrane 29 2 2
MIRT621304 YIPF4 Yip1 domain family member 4 2 2
MIRT622086 SRPX2 sushi repeat containing protein, X-linked 2 2 2
MIRT622168 SMYD1 SET and MYND domain containing 1 2 2
MIRT622543 PXMP4 peroxisomal membrane protein 4 2 2
MIRT622761 PGM3 phosphoglucomutase 3 2 2
MIRT622885 PDCL3 phosducin like 3 2 4
MIRT623130 NDUFC2 NADH:ubiquinone oxidoreductase subunit C2 2 2
MIRT624840 ACAP2 ArfGAP with coiled-coil, ankyrin repeat and PH domains 2 2 2
MIRT625047 MBD3 methyl-CpG binding domain protein 3 2 2
MIRT625059 ZNF556 zinc finger protein 556 2 2
MIRT625508 PPAPDC1A phospholipid phosphatase 4 2 2
MIRT625573 ANKRD42 ankyrin repeat domain 42 2 2
MIRT626133 SNRNP48 small nuclear ribonucleoprotein U11/U12 subunit 48 2 2
MIRT626327 LRTOMT leucine rich transmembrane and O-methyltransferase domain containing 2 2
MIRT626765 CDC14B cell division cycle 14B 2 2
MIRT626798 CSE1L chromosome segregation 1 like 2 2
MIRT627212 ZC3H12B zinc finger CCCH-type containing 12B 2 2
MIRT627225 ZBTB8B zinc finger and BTB domain containing 8B 2 4
MIRT627256 XKR4 XK related 4 2 2
MIRT628190 GATSL2 cytosolic arginine sensor for mTORC1 subunit 2 2 2
MIRT628466 AHSA2 activator of HSP90 ATPase homolog 2 2 2
MIRT628627 CCT4 chaperonin containing TCP1 subunit 4 2 2
MIRT629040 KLLN killin, p53-regulated DNA replication inhibitor 2 2
MIRT630847 ACACB acetyl-CoA carboxylase beta 2 2
MIRT631721 RNASEH2B ribonuclease H2 subunit B 2 2
MIRT632264 USP1 ubiquitin specific peptidase 1 2 4
MIRT632571 POLQ DNA polymerase theta 2 2
MIRT633992 SLC35E2 solute carrier family 35 member E2 2 2
MIRT635211 ZNF286A zinc finger protein 286A 2 4
MIRT635249 ELOVL6 ELOVL fatty acid elongase 6 2 4
MIRT635261 FBXL20 F-box and leucine rich repeat protein 20 2 2
MIRT635283 GK5 glycerol kinase 5 (putative) 2 2
MIRT635663 DTX3L deltex E3 ubiquitin ligase 3L 2 2
MIRT636251 SEC63 SEC63 homolog, protein translocation regulator 2 2
MIRT636564 EPB41 erythrocyte membrane protein band 4.1 2 2
MIRT636814 TBC1D24 TBC1 domain family member 24 2 2
MIRT637358 ZNF460 zinc finger protein 460 2 2
MIRT637473 DEFB105B defensin beta 105B 2 4
MIRT637505 DEFB105A defensin beta 105A 2 4
MIRT637861 SC5D sterol-C5-desaturase 2 2
MIRT638080 ZNF652 zinc finger protein 652 2 2
MIRT638096 ZBTB8A zinc finger and BTB domain containing 8A 2 2
MIRT638174 TMED4 transmembrane p24 trafficking protein 4 2 2
MIRT638201 TAF13 TATA-box binding protein associated factor 13 2 2
MIRT638278 SH2B3 SH2B adaptor protein 3 2 2
MIRT638714 FUT11 fucosyltransferase 11 2 2
MIRT638852 CLMP CXADR like membrane protein 2 2
MIRT639815 TMED8 transmembrane p24 trafficking protein family member 8 2 2
MIRT640879 ENTPD1 ectonucleoside triphosphate diphosphohydrolase 1 2 2
MIRT640937 FAM129A family with sequence similarity 129 member A 2 2
MIRT640971 ORAI2 ORAI calcium release-activated calcium modulator 2 2 2
MIRT641642 GNAZ G protein subunit alpha z 2 2
MIRT641931 SLC25A16 solute carrier family 25 member 16 2 2
MIRT642136 CRY2 cryptochrome circadian clock 2 2 2
MIRT643199 JAK3 Janus kinase 3 2 2
MIRT643256 ZNF566 zinc finger protein 566 2 2
MIRT643378 TRIM16L tripartite motif containing 16 like 2 2
MIRT643683 AMER3 APC membrane recruitment protein 3 2 2
MIRT643728 MCMDC2 minichromosome maintenance domain containing 2 2 2
MIRT643949 CCDC141 coiled-coil domain containing 141 2 2
MIRT644915 SERF1B small EDRK-rich factor 1B 2 2
MIRT645163 NOL9 nucleolar protein 9 2 2
MIRT645547 PABPC1L2B poly(A) binding protein cytoplasmic 1 like 2B 2 2
MIRT645550 PABPC1L2A poly(A) binding protein cytoplasmic 1 like 2A 2 2
MIRT645572 TACR2 tachykinin receptor 2 2 2
MIRT646697 SERF1A small EDRK-rich factor 1A 2 2
MIRT647806 FRMD8 FERM domain containing 8 2 2
MIRT647903 CIRH1A UTP4, small subunit processome component 2 2
MIRT648978 ACAD8 acyl-CoA dehydrogenase family member 8 2 2
MIRT649907 SLFN12L schlafen family member 12 like 2 2
MIRT650224 SIGLEC9 sialic acid binding Ig like lectin 9 2 4
MIRT651880 UGGT1 UDP-glucose glycoprotein glucosyltransferase 1 2 2
MIRT651935 UBN1 ubinuclein 1 2 2
MIRT652839 TACO1 translational activator of cytochrome c oxidase I 2 2
MIRT652994 SUGT1 SGT1 homolog, MIS12 kinetochore complex assembly cochaperone 2 2
MIRT654800 PRICKLE1 prickle planar cell polarity protein 1 2 2
MIRT655591 OTUD7B OTU deubiquitinase 7B 2 2
MIRT658760 EIF4EBP2 eukaryotic translation initiation factor 4E binding protein 2 2 2
MIRT659358 CRKL CRK like proto-oncogene, adaptor protein 2 2
MIRT660717 AMER1 APC membrane recruitment protein 1 2 2
MIRT660737 ALG14 ALG14, UDP-N-acetylglucosaminyltransferase subunit 2 2
MIRT661088 TMEM145 transmembrane protein 145 2 2
MIRT661176 S1PR2 sphingosine-1-phosphate receptor 2 2 2
MIRT662005 ZNF445 zinc finger protein 445 2 2
MIRT662178 KIAA1210 KIAA1210 2 2
MIRT662270 OR51E2 olfactory receptor family 51 subfamily E member 2 2 2
MIRT663046 SLC16A4 solute carrier family 16 member 4 2 2
MIRT663476 POFUT2 protein O-fucosyltransferase 2 2 2
MIRT664039 RPL27A ribosomal protein L27a 2 2
MIRT664096 ZDHHC24 zinc finger DHHC-type containing 24 2 2
MIRT664109 FUT1 fucosyltransferase 1 (H blood group) 2 2
MIRT664317 CD209 CD209 molecule 2 2
MIRT664455 BBS5 Bardet-Biedl syndrome 5 2 2
MIRT664595 HSD17B12 hydroxysteroid 17-beta dehydrogenase 12 2 4
MIRT664694 DBF4 DBF4 zinc finger 2 2
MIRT665162 SF3A1 splicing factor 3a subunit 1 2 2
MIRT665214 RBM22 RNA binding motif protein 22 2 2
MIRT665254 ZNF286B zinc finger protein 286B 2 2
MIRT665268 ZFP69B ZFP69 zinc finger protein B 2 2
MIRT665606 TTC39A tetratricopeptide repeat domain 39A 2 2
MIRT665830 TIMELESS timeless circadian clock 2 2
MIRT666201 SMARCC1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 1 2 2
MIRT666546 RNF115 ring finger protein 115 2 2
MIRT666602 REEP3 receptor accessory protein 3 2 2
MIRT666862 POU2F3 POU class 2 homeobox 3 2 4
MIRT666886 POLA2 DNA polymerase alpha 2, accessory subunit 2 2
MIRT667158 NRXN3 neurexin 3 2 2
MIRT667252 NEK9 NIMA related kinase 9 2 2
MIRT667419 MFSD2A major facilitator superfamily domain containing 2A 2 2
MIRT667434 METTL8 methyltransferase like 8 2 2
MIRT668023 HAUS3 HAUS augmin like complex subunit 3 2 2
MIRT668062 GPR75 G protein-coupled receptor 75 2 2
MIRT668070 GOSR1 golgi SNAP receptor complex member 1 2 2
MIRT668607 EHD4 EH domain containing 4 2 4
MIRT668694 DNAL1 dynein axonemal light chain 1 2 2
MIRT668782 DAAM1 dishevelled associated activator of morphogenesis 1 2 2
MIRT669037 CHEK1 checkpoint kinase 1 2 2
MIRT669044 CHAF1B chromatin assembly factor 1 subunit B 2 4
MIRT669156 CCNG1 cyclin G1 2 2
MIRT670090 ABCF3 ATP binding cassette subfamily F member 3 2 4
MIRT670206 SLC24A4 solute carrier family 24 member 4 2 2
MIRT672488 FUS FUS RNA binding protein 2 2
MIRT673830 SLC11A2 solute carrier family 11 member 2 2 2
MIRT675481 VEGFC vascular endothelial growth factor C 2 2
MIRT675634 HACE1 HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1 2 2
MIRT677913 HIST1H2BN histone cluster 1 H2B family member n 2 2
MIRT678420 ANKRD36 ankyrin repeat domain 36 2 2
MIRT678626 OLFML2A olfactomedin like 2A 2 2
MIRT678791 NUPL2 nucleoporin like 2 2 2
MIRT679561 LIN9 lin-9 DREAM MuvB core complex component 2 2
MIRT680743 CA5B carbonic anhydrase 5B 2 2
MIRT682481 LIX1L limb and CNS expressed 1 like 2 4
MIRT682701 PSMD9 proteasome 26S subunit, non-ATPase 9 2 2
MIRT682759 MDM2 MDM2 proto-oncogene 2 2
MIRT682811 TMCO1 transmembrane and coiled-coil domains 1 2 2
MIRT682847 DNAJC28 DnaJ heat shock protein family (Hsp40) member C28 2 2
MIRT682896 XIAP X-linked inhibitor of apoptosis 2 2
MIRT682916 FAM73A mitoguardin 1 2 2
MIRT682935 ZNF292 zinc finger protein 292 2 2
MIRT682953 RPL12 ribosomal protein L12 2 2
MIRT682972 NF2 neurofibromin 2 2 2
MIRT683033 SUSD5 sushi domain containing 5 2 2
MIRT683081 A1BG alpha-1-B glycoprotein 2 2
MIRT683105 TIMM10B translocase of inner mitochondrial membrane 10B 2 2
MIRT686640 TMEM184C transmembrane protein 184C 2 2
MIRT687444 NR3C1 nuclear receptor subfamily 3 group C member 1 2 2
MIRT688401 EMC8 ER membrane protein complex subunit 8 2 2
MIRT688886 C3orf70 chromosome 3 open reading frame 70 2 2
MIRT689148 IRAK1BP1 interleukin 1 receptor associated kinase 1 binding protein 1 2 2
MIRT689234 RPS19 ribosomal protein S19 2 2
MIRT689306 C5AR2 complement component 5a receptor 2 2 2
MIRT689364 ZNF101 zinc finger protein 101 2 2
MIRT689498 SCARF1 scavenger receptor class F member 1 2 2
MIRT689655 RBM23 RNA binding motif protein 23 2 2
MIRT689897 SOD2 superoxide dismutase 2 2 2
MIRT690150 PPIL6 peptidylprolyl isomerase like 6 2 2
MIRT690601 C17orf105 chromosome 17 open reading frame 105 2 2
MIRT690805 FAHD1 fumarylacetoacetate hydrolase domain containing 1 2 2
MIRT690946 GLG1 golgi glycoprotein 1 2 2
MIRT691388 ATP13A4 ATPase 13A4 2 2
MIRT691408 DNA2 DNA replication helicase/nuclease 2 2 2
MIRT692175 LRRC3C leucine rich repeat containing 3C 2 2
MIRT692235 ALDH1B1 aldehyde dehydrogenase 1 family member B1 2 2
MIRT693283 GINM1 glycoprotein integral membrane 1 2 2
MIRT693439 TPGS1 tubulin polyglutamylase complex subunit 1 2 2
MIRT693460 HIST1H2AG histone cluster 1 H2A family member g 2 2
MIRT693768 ZNF383 zinc finger protein 383 2 2
MIRT694018 PPIL4 peptidylprolyl isomerase like 4 2 2
MIRT694236 ZNF749 zinc finger protein 749 2 2
MIRT694321 NLRP9 NLR family pyrin domain containing 9 2 2
MIRT694347 CHST6 carbohydrate sulfotransferase 6 2 2
MIRT694430 MCF2L2 MCF.2 cell line derived transforming sequence-like 2 2 2
MIRT695763 WDR35 WD repeat domain 35 2 2
MIRT696167 TIPIN TIMELESS interacting protein 2 2
MIRT696417 DOCK7 dedicator of cytokinesis 7 2 2
MIRT696543 C3 complement C3 2 2
MIRT696998 CCDC80 coiled-coil domain containing 80 2 2
MIRT697232 ZYG11A zyg-11 family member A, cell cycle regulator 2 2
MIRT697806 UBXN2A UBX domain protein 2A 2 2
MIRT697944 TVP23C trans-golgi network vesicle protein 23 homolog C 2 2
MIRT698161 TNFRSF13C TNF receptor superfamily member 13C 2 2
MIRT698778 STK4 serine/threonine kinase 4 2 2
MIRT700259 RBM12B RNA binding motif protein 12B 2 2
MIRT700970 PDK3 pyruvate dehydrogenase kinase 3 2 2
MIRT701251 NUP35 nucleoporin 35 2 2
MIRT701607 MYPN myopalladin 2 2
MIRT702457 KIAA1467 family with sequence similarity 234 member B 2 2
MIRT702613 ITPRIPL2 inositol 1,4,5-trisphosphate receptor interacting protein like 2 2 2
MIRT702691 IRGQ immunity related GTPase Q 2 2
MIRT702934 HMX3 H6 family homeobox 3 2 2
MIRT702991 HERPUD2 HERPUD family member 2 2 2
MIRT703148 GPR137C G protein-coupled receptor 137C 2 2
MIRT703980 EMC1 ER membrane protein complex subunit 1 2 2
MIRT704569 CLPX caseinolytic mitochondrial matrix peptidase chaperone subunit 2 2
MIRT705065 C4orf32 family with sequence similarity 241 member A 2 2
MIRT705447 ATL2 atlastin GTPase 2 2 2
MIRT705856 AFF3 AF4/FMR2 family member 3 2 2
MIRT705886 ADIPOR2 adiponectin receptor 2 2 2
MIRT714370 HP1BP3 heterochromatin protein 1 binding protein 3 2 2
MIRT715784 PHF12 PHD finger protein 12 2 2
MIRT715864 KIAA0101 PCNA clamp associated factor 2 2
MIRT715947 NUP93 nucleoporin 93 2 2
MIRT716132 THOC5 THO complex 5 2 2
MIRT717084 EBF4 early B-cell factor 4 2 2
MIRT725424 HNRNPA3 heterogeneous nuclear ribonucleoprotein A3 2 2
MIRT736091 GREM1 gremlin 1, DAN family BMP antagonist 3 0
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-4793 Dabrafenib 44462760 NSC764134 approved sensitive cell line (A375)
hsa-miR-4793-3p Gefitinib 123631 NSC715055 approved sensitive cell line (HCC827)
hsa-miR-4793-3p Doxorubicin 31703 NSC123127 approved resistant cell line (BAS)
hsa-miR-4793-3p Osimertinib 71496458 NSC779217 approved sensitive cell line (H1975)

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