pre-miRNA Information
pre-miRNA hsa-mir-3133   
Genomic Coordinates chr2: 241477905 - 241477982
Description Homo sapiens miR-3133 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-3133
Sequence 10| UAAAGAACUCUUAAAACCCAAU |31
Evidence Experimental
Experiments Illumina
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1030052469 1 dbSNP
rs955010137 12 dbSNP
Putative Targets

miRNA Expression profile
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol ABCC9   
Synonyms ABC37, ATFB12, CANTU, CMD1O, SUR2
Description ATP binding cassette subfamily C member 9
Transcript NM_020297   
Other Transcripts NM_005691   
Expression
Putative miRNA Targets on ABCC9
3'UTR of ABCC9
(miRNA target sites are highlighted)
>ABCC9|NM_020297|3'UTR
   1 AGGAGTGTCTTAAAACAATACATGTATTTAAAATAATGCAGTCATAACCTAATTAATGGATCATCAGCTTGACCTCTGTA
  81 AAGTGGCATCTTAAAACTTTTACAGATTTTTGCACAAAAAGTGGACATTTATTTTTCCTGTTTTTAAAACAGTTTTTCAA
 161 GATATTATTGCTTAATATGTTCATTATTGATGTTTTTATAGTGATCCAGCCACTCTAGCTTTAAGAATAGCTAGGTTGTA
 241 TTAAAACATGTAAGCTACTTTAAGTGATAAATCAATAGCTAAAGTTTTCTCCTAACTTTAAGTCTGGTAAATATCTCTCA
 321 GGAATGGAAGTGTCAATGAGTAGTCAGTATTACTATACTCTTGTTTGTAAGAATATATTTTCCTTATTGTTGGAGTCTCC
 401 AGAGGTTATTGGAAGGAATAAAAAAGGACATGTTTTCTAACGAAACTCTCAAATTCATTATCTACTTCATGAGAATTTAT
 481 TTGTATTCATTAACATTAGTAATACCTATTTTTCTTAAGAGCCTTCTTTTTTCCCTTTTGTTTCTTGTCACCAAGAAGTT
 561 ATCACACTTATACTTATTCTATAAGGCCAAAGCCTTATCTAGAAAGATCATGAAGAGTTTGGATATTTTTAAAACTATAC
 641 TCGAATTTTCATTTTTTCCTGTCCTGTAAAGAGAGAATTCTTAAGATATCAGGCATAATGTATGTACCTTTTCCAGACTG
 721 AAGTTCAAAGAATGATTAGGTTCAATCTTTCAGTGGCAGGCCAGCTAAACTTTCTATAGTTTAATGATTAGCTGTGGTTA
 801 TGATCTTGAGCCCTAACATGCCACATTACTCAAGATTTACACAGGCAAGTGACTTCATTTGGCACTGCTAATAATGGCAG
 881 GTGAACATTCCTCTCAGGTGTGAGATATTTCCTATGAAACAGTCCACTGGCAGGCTGGAGATATCTTACACTTTGAAGTT
 961 ATATATATATAAAACAAGTGTCTATTTCTAGCTGAAAGAGTTTACCTCTTCTAGACATTTATGCCCAATGGTGTCACACA
1041 TGATCATTTGCTCCTGCTCTAATTTTAATGTGCATACAAAAAATATACCAAAAATGTTATTGTAATTTTAATGAGCATGT
1121 AAAGAGTGTATCAAAAATTGATGGGATATTAGTGTTAGGTTTTGCTTAAATGAAAATTAATAAATTCAAAAATACTAAAA
1201 GTCACCTTCTTTGTCACGTTAGCAACCAGTTTCTACTATTCTGTGCCCATCCAGTGTCAATATCATTGATTTCTTTTTCA
1281 TATGAAGATCCACATGCATTGTAAGATTGTGAAGATATATAAAATTGATGAATTAAGAGAAATTATGCCACTTTCCTATA
1361 GTTTCTGTGTTCTGTTTATTGTATGGTGTATTCACTCTTGGAAAATATGTAATAGTTGTGTATCCAGAATATGTGTCTTC
1441 ACCTGAATATTTAATCTTTATATTTACAAAAAAATAAGTTCCACAAGATGGACAAAAATGGTCCATGATATTTAGCTTAA
1521 ATTGTAACCTTTTGTTGTGTATATAAAACTTCCTTGGAAGAAAATAACCTTATTGTTTTCTTAAAGCTAAACAGAATAGG
1601 ATTGGTACTCATTAATTATGTCTTGCAAATATTTTCTAAAAATTCAACCACTCTCCTAAAATGGTGTTTAAATATTTTGT
1681 AGGGCAGAATATGCATATTGCCTGTTAGCAAGTAATAATTCATTCTCATAGAGAAATGGGTTTTTACCCATGGAAGTAAT
1761 CTTTTTTTTTTCTTTTTTTTTTTTAATTTTTTTTTTAATATACTTTAAGTTTTAGGGTACATGTGCACATTGTGCAGGTT
1841 AGTTACATATATATACATGTGCCATGCTGGTGCGCTGCACCCACTAACTCGTCATCTAGCATTAGGTATATCTCCCAATG
1921 CTATCCCTCCCCACTCCCCCCACCCCACCACAGTCCCCAGAGTGTGATATTCCCCTTCCTGTGTCCATGTGATCTCATTG
2001 TTCAATTCCCACCTATGAGTGAGAATATGCGGTGTTTGGTTTTTTGTTCTTGCGATAGTTTACTGAGAATGATGGTTTCC
2081 AGTTTCATCCATGTCCCTACAAAGGACATGAACTCATCATTTTGTATGGCTGCATAGTATTCCATGGTGTATATGTGCCA
2161 CATTTTCTTAATCCAGTCTATCATTGTTGGACATTTGGGTTGGTTCCAAGTCTTTGCTATTGTGAATAATGCCGCAATAA
2241 ACATACGTGTGCATGTGTCTTTATAGCAGCATGATTTATAGTCATTTGGGTATATACCCAGTAATGGGATGGCTGGGTCA
2321 AATGGTATTTCTAGTTCTAGATCCCTGAGGAATCGCCACACTGACTTCCACAATGGTTAAACTAAAGAGCTTCTGCACAG
2401 CAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAATTTTCGCAACCTACTCATCTGACAAAGGG
2481 CTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGGTGAAGGA
2561 CATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAAAAATGCTCATCATCACTGGCCATCA
2641 GAGAAATGCAAATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAAC
2721 AGGTGCTGGAGAGGATGTGGAGAAATAGGAACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAA
2801 GTAATCTTTTAATGATATTTTCTTATTATATTGCTACAGGCAACATCAGTAGAAGCCTATCTAGTTACACTAAACTAAAG
2881 ATCACATTCACCATTCTTACAGCCAAGTGGTTGCTGGTCCCCTCATAACTTTTAGTTACTTAAGTTGAGTAAATGTCTAA
2961 TTGTTTACAAACTAAATTGACTAAATAAGGTCAAGGATAATGTTTTTCATTGATTAACCATTTATTATACATATAATCTA
3041 TTGAATATAAAAAGATTCACCTTGAAATAATATTTGACTATATAGGTACATATCTGTAAAAGATGACCACCTTAACTAAA
3121 TCAGATTTTACATTTATAAATTTTATATTTAATTAGTCAAATCAATTTTTAAATCATAACTCCTTAATCTCATAAGAAGC
3201 AATAAATGCATAAAGCATTATATTAAAATACCAGGGTTACTTATGTCATTGACAGGGAAAAGACTTTGTATAAACAATTA
3281 TGCACCATCTATTTTTGTACTCTTACTCATGATCCATTTAAAAGTCTACTCAGCTCTAGATTAGATACCAGAAGACCCTC
3361 TAAGTAACTGATAACTGAGATTCGGGACCATGTCTTGTTTGCCATTGTGCCCTTGGAATTTAATACAAGTGCCTAACCCA
3441 CAGTAGGGTTGATTGATTCACTGATTAGTTTTACTGCCATGTGCCTATAACTATAGGTTATTCTCTTTCCTTTTCTATGT
3521 TGTGTTTATTCTATTTATTCTCTACAATATATAAAATGTATTTGTTCTCTACAATAAATGTGTTTATTCTCTACAATATA
3601 TAAAAACATATTGGACTACTATTACATAATTAAATTACTCTTTTATTTGCTTAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' uaACCCAAAAUUCUCAAGAAau 5'
            ||| ||||    ||||||  
Target 5' ttTGGTTTTT---TGTTCTTgc 3'
2035 - 2053 137.00 -8.80
2
miRNA  3' uaacccAAAAUUCUC--AAGAAAu 5'
                | |||||||  |||||| 
Target 5' tattttTCTTAAGAGCCTTCTTTt 3'
507 - 530 132.00 -8.30
3
miRNA  3' uaACCCAAAAUU------C-UCA--AGAAAu 5'
            |||||||| |      | |||  ||||| 
Target 5' aaTGGGTTTTTACCCATGGAAGTAATCTTTt 3'
1735 - 1765 126.00 -11.20
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
228424 5 ClinVar
1189888 7 ClinVar
379564 19 ClinVar
COSN31488237 10 COSMIC
COSN30503250 15 COSMIC
COSN29647082 24 COSMIC
COSN31584721 26 COSMIC
COSN31612355 36 COSMIC
COSN19651587 57 COSMIC
COSN30137034 60 COSMIC
COSN21502334 74 COSMIC
COSN16503242 86 COSMIC
COSN30171371 98 COSMIC
COSN31605523 156 COSMIC
COSN20227456 161 COSMIC
COSN31547254 178 COSMIC
COSN16446439 496 COSMIC
COSN5714924 559 COSMIC
COSN21978258 574 COSMIC
COSN16353496 688 COSMIC
COSN22737568 712 COSMIC
COSN21304139 713 COSMIC
COSN8705608 1155 COSMIC
COSN5319842 1158 COSMIC
COSN21426311 1209 COSMIC
COSN5319841 1319 COSMIC
COSN25623312 1531 COSMIC
COSN16977544 1772 COSMIC
COSN21968096 2237 COSMIC
COSN21788414 2774 COSMIC
COSN1146169 2985 COSMIC
COSN7322342 3175 COSMIC
COSN1567052 3287 COSMIC
COSN1567051 3308 COSMIC
COSN21571282 3331 COSMIC
COSN16600532 3351 COSMIC
COSN7322341 3383 COSMIC
COSN17893374 3606 COSMIC
COSN7322340 3615 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs876657736 5 dbSNP
rs180770035 7 dbSNP
rs922613300 16 dbSNP
rs114906131 19 dbSNP
rs376736105 22 dbSNP
rs753102079 23 dbSNP
rs767798962 23 dbSNP
rs762798124 26 dbSNP
rs1478415167 27 dbSNP
rs775503041 28 dbSNP
rs1364294777 30 dbSNP
rs1187508672 38 dbSNP
rs1487070960 39 dbSNP
rs1011019352 42 dbSNP
rs1235333672 43 dbSNP
rs769135819 44 dbSNP
rs370423028 48 dbSNP
rs1164953622 52 dbSNP
rs772458579 57 dbSNP
rs768172354 60 dbSNP
rs1422424438 62 dbSNP
rs1299776232 64 dbSNP
rs1360985927 71 dbSNP
rs913054111 73 dbSNP
rs1276266181 76 dbSNP
rs1359877229 80 dbSNP
rs1230117421 86 dbSNP
rs566226557 89 dbSNP
rs1321349926 91 dbSNP
rs1264712358 94 dbSNP
rs188290333 103 dbSNP
rs1000050511 105 dbSNP
rs1488833131 135 dbSNP
rs529676218 147 dbSNP
rs957267834 149 dbSNP
rs560738082 152 dbSNP
rs906499382 152 dbSNP
rs1483914224 157 dbSNP
rs927163179 158 dbSNP
rs1181924551 161 dbSNP
rs772916231 163 dbSNP
rs971057093 166 dbSNP
rs947970608 173 dbSNP
rs1331799809 175 dbSNP
rs1325568194 177 dbSNP
rs796370044 180 dbSNP
rs762319597 183 dbSNP
rs1418869836 185 dbSNP
rs1316060408 187 dbSNP
rs1390626139 193 dbSNP
rs1448747573 198 dbSNP
rs1373004349 204 dbSNP
rs1218713626 205 dbSNP
rs1382194713 206 dbSNP
rs146747782 210 dbSNP
rs961459071 214 dbSNP
rs1421837275 215 dbSNP
rs1381816968 227 dbSNP
rs1239895830 228 dbSNP
rs1282668883 230 dbSNP
rs1314455242 242 dbSNP
rs1211499615 243 dbSNP
rs1048369854 251 dbSNP
rs931114483 264 dbSNP
rs1180051090 277 dbSNP
rs1238418245 279 dbSNP
rs1438754509 282 dbSNP
rs759257927 294 dbSNP
rs769057774 296 dbSNP
rs1414952352 302 dbSNP
rs1175305348 306 dbSNP
rs1405393779 311 dbSNP
rs143461880 317 dbSNP
rs1333546565 321 dbSNP
rs565439540 325 dbSNP
rs1200368530 330 dbSNP
rs34599737 350 dbSNP
rs529983576 356 dbSNP
rs1441842070 358 dbSNP
rs1278123845 361 dbSNP
rs1449805043 362 dbSNP
rs943788580 379 dbSNP
rs889956054 381 dbSNP
rs545611317 401 dbSNP
rs573526157 402 dbSNP
rs1278539171 409 dbSNP
rs139937898 410 dbSNP
rs1217106604 413 dbSNP
rs1199966237 419 dbSNP
rs553485421 426 dbSNP
rs998857611 431 dbSNP
rs1457013764 432 dbSNP
rs1179288279 441 dbSNP
rs1239741658 442 dbSNP
rs1478253695 465 dbSNP
rs73253073 476 dbSNP
rs1427133374 481 dbSNP
rs1467175429 484 dbSNP
rs1172903623 514 dbSNP
rs867162029 516 dbSNP
rs1283784 519 dbSNP
rs779707625 521 dbSNP
rs945481202 522 dbSNP
rs1437644189 529 dbSNP
rs879685437 532 dbSNP
rs915364084 533 dbSNP
rs1053882242 534 dbSNP
rs1158386049 540 dbSNP
rs935795226 545 dbSNP
rs999574981 555 dbSNP
rs1278248760 559 dbSNP
rs1338211086 565 dbSNP
rs1193681419 571 dbSNP
rs971236145 573 dbSNP
rs377734952 577 dbSNP
rs1024943987 578 dbSNP
rs776330173 578 dbSNP
rs1266594083 579 dbSNP
rs1173824062 585 dbSNP
rs769400461 600 dbSNP
rs980027156 601 dbSNP
rs1424373337 606 dbSNP
rs1476731491 607 dbSNP
rs1393126256 621 dbSNP
rs1406238000 630 dbSNP
rs1302888269 631 dbSNP
rs111647146 636 dbSNP
rs895171741 638 dbSNP
rs1489210478 640 dbSNP
rs1299379469 642 dbSNP
rs538101784 643 dbSNP
rs1224631527 646 dbSNP
rs1285507967 648 dbSNP
rs995455706 655 dbSNP
rs1244843688 663 dbSNP
rs1289297055 669 dbSNP
rs141707120 671 dbSNP
rs1489166292 671 dbSNP
rs896952307 671 dbSNP
rs1445268417 673 dbSNP
rs1191104907 674 dbSNP
rs972844440 676 dbSNP
rs961079205 679 dbSNP
rs1383734919 683 dbSNP
rs1421913697 686 dbSNP
rs1299286354 699 dbSNP
rs1384859847 706 dbSNP
rs1280923953 710 dbSNP
rs912287421 712 dbSNP
rs1340605270 720 dbSNP
rs558468396 743 dbSNP
rs1451410166 747 dbSNP
rs1312470132 758 dbSNP
rs929800430 761 dbSNP
rs538424676 769 dbSNP
rs1016598643 771 dbSNP
rs1217578309 773 dbSNP
rs148416760 776 dbSNP
rs932319085 778 dbSNP
rs954183632 780 dbSNP
rs1028477209 783 dbSNP
rs914273941 784 dbSNP
rs1258288034 785 dbSNP
rs1461856027 793 dbSNP
rs998430079 796 dbSNP
rs1221045849 798 dbSNP
rs1241549197 801 dbSNP
rs901463516 810 dbSNP
rs1159627276 824 dbSNP
rs1363628962 825 dbSNP
rs1452235753 846 dbSNP
rs757201191 850 dbSNP
rs184578911 851 dbSNP
rs1334185828 853 dbSNP
rs377351174 858 dbSNP
rs1053841168 859 dbSNP
rs1305992543 861 dbSNP
rs1333786366 863 dbSNP
rs1335727199 865 dbSNP
rs567207145 867 dbSNP
rs1412377044 881 dbSNP
rs374294612 882 dbSNP
rs938103001 883 dbSNP
rs1478793954 891 dbSNP
rs959351629 895 dbSNP
rs905674772 906 dbSNP
rs1261417598 907 dbSNP
rs1459235252 911 dbSNP
rs1178048182 912 dbSNP
rs1026991276 917 dbSNP
rs995400153 923 dbSNP
rs897088063 924 dbSNP
rs1430589141 930 dbSNP
rs144446899 938 dbSNP
rs1401903407 940 dbSNP
rs1465771546 957 dbSNP
rs1297280428 961 dbSNP
rs949989987 962 dbSNP
rs530571057 965 dbSNP
rs1393984847 967 dbSNP
rs1388315985 968 dbSNP
rs1036979608 972 dbSNP
rs1344801893 982 dbSNP
rs917118068 985 dbSNP
rs1239458641 989 dbSNP
rs1208348344 991 dbSNP
rs972677318 994 dbSNP
rs1320124232 1005 dbSNP
rs1258872643 1011 dbSNP
rs939666117 1022 dbSNP
rs891002524 1028 dbSNP
rs777470921 1038 dbSNP
rs533809571 1040 dbSNP
rs829063 1041 dbSNP
rs1278077063 1042 dbSNP
rs545746533 1046 dbSNP
rs953820530 1055 dbSNP
rs1028490604 1061 dbSNP
rs752490822 1070 dbSNP
rs149235644 1071 dbSNP
rs1445441012 1072 dbSNP
rs560007812 1077 dbSNP
rs543059003 1083 dbSNP
rs1428595779 1085 dbSNP
rs1169244135 1095 dbSNP
rs1021587655 1100 dbSNP
rs1459184860 1102 dbSNP
rs755412780 1111 dbSNP
rs1466669080 1116 dbSNP
rs1364788756 1120 dbSNP
rs1402976392 1124 dbSNP
rs1299998036 1127 dbSNP
rs1342377037 1128 dbSNP
rs1215225439 1140 dbSNP
rs1305952921 1152 dbSNP
rs1247315744 1156 dbSNP
rs1292895999 1158 dbSNP
rs1490296359 1160 dbSNP
rs1398068294 1163 dbSNP
rs1169599241 1164 dbSNP
rs924172536 1166 dbSNP
rs978391031 1168 dbSNP
rs1486515134 1179 dbSNP
rs1185429561 1182 dbSNP
rs1416826405 1191 dbSNP
rs1424309181 1192 dbSNP
rs1415749658 1194 dbSNP
rs1425166326 1207 dbSNP
rs574057853 1211 dbSNP
rs557468594 1214 dbSNP
rs192888616 1217 dbSNP
rs113307208 1218 dbSNP
rs1429982838 1224 dbSNP
rs1288339636 1225 dbSNP
rs893795682 1226 dbSNP
rs1250809293 1230 dbSNP
rs1359092990 1236 dbSNP
rs1481779358 1238 dbSNP
rs959463674 1241 dbSNP
rs1288690191 1246 dbSNP
rs1318019836 1247 dbSNP
rs1215769688 1250 dbSNP
rs1026959986 1254 dbSNP
rs1183750697 1255 dbSNP
rs139370710 1260 dbSNP
rs1180244060 1263 dbSNP
rs1288237923 1268 dbSNP
rs1408501468 1268 dbSNP
rs201459464 1268 dbSNP
rs1156870585 1270 dbSNP
rs1400766903 1273 dbSNP
rs1381586846 1274 dbSNP
rs1309480957 1277 dbSNP
rs961395179 1283 dbSNP
rs1337541932 1293 dbSNP
rs1382307952 1299 dbSNP
rs1002284815 1300 dbSNP
rs1374086315 1302 dbSNP
rs1297079243 1313 dbSNP
rs1374538346 1316 dbSNP
rs111349057 1317 dbSNP
rs1351535094 1327 dbSNP
rs1282778073 1331 dbSNP
rs1313383421 1339 dbSNP
rs1203745334 1343 dbSNP
rs1008181421 1344 dbSNP
rs1200165161 1346 dbSNP
rs1046482185 1351 dbSNP
rs1253906836 1354 dbSNP
rs1469438155 1359 dbSNP
rs1175349122 1366 dbSNP
rs572654650 1372 dbSNP
rs890921736 1378 dbSNP
rs1480763006 1379 dbSNP
rs1177206744 1384 dbSNP
rs1405507722 1393 dbSNP
rs949883084 1406 dbSNP
rs895668299 1418 dbSNP
rs1160729691 1421 dbSNP
rs1037328010 1423 dbSNP
rs1249991117 1433 dbSNP
rs552770923 1443 dbSNP
rs1054159431 1453 dbSNP
rs1347905001 1455 dbSNP
rs536310131 1457 dbSNP
rs568030925 1461 dbSNP
rs1282033824 1463 dbSNP
rs1320838189 1464 dbSNP
rs1245417188 1465 dbSNP
rs567232093 1467 dbSNP
rs1200060996 1477 dbSNP
rs1273283956 1478 dbSNP
rs902887301 1481 dbSNP
rs983791120 1484 dbSNP
rs1202179796 1487 dbSNP
rs1248287309 1489 dbSNP
rs932397602 1490 dbSNP
rs144076013 1491 dbSNP
rs1354808111 1493 dbSNP
rs369206463 1501 dbSNP
rs1479500334 1502 dbSNP
rs965906894 1503 dbSNP
rs867041547 1516 dbSNP
rs1169816192 1522 dbSNP
rs1021149871 1528 dbSNP
rs374848925 1529 dbSNP
rs201058622 1530 dbSNP
rs1327240882 1532 dbSNP
rs1367873014 1544 dbSNP
rs1305744931 1547 dbSNP
rs991000811 1559 dbSNP
rs938189692 1562 dbSNP
rs1343025710 1565 dbSNP
rs988371070 1568 dbSNP
rs1270333163 1572 dbSNP
rs1369648564 1575 dbSNP
rs1338313063 1588 dbSNP
rs1212496228 1589 dbSNP
rs1293617205 1591 dbSNP
rs1359932989 1596 dbSNP
rs571301597 1599 dbSNP
rs1221568469 1602 dbSNP
rs1266700350 1605 dbSNP
rs1489265112 1609 dbSNP
rs1195412390 1612 dbSNP
rs1242825083 1616 dbSNP
rs1475179176 1619 dbSNP
rs919991050 1620 dbSNP
rs958313630 1642 dbSNP
rs974195653 1643 dbSNP
rs1360974729 1647 dbSNP
rs562434394 1649 dbSNP
rs1160231168 1657 dbSNP
rs1384463535 1659 dbSNP
rs1318383262 1662 dbSNP
rs1418159392 1664 dbSNP
rs1363377659 1667 dbSNP
rs1316724650 1675 dbSNP
rs1359816097 1681 dbSNP
rs1176882197 1696 dbSNP
rs1434938677 1698 dbSNP
rs1032334938 1712 dbSNP
rs1352723723 1717 dbSNP
rs1205667077 1718 dbSNP
rs961671018 1719 dbSNP
rs1038416413 1731 dbSNP
rs987084620 1733 dbSNP
rs1245181411 1735 dbSNP
rs1445535315 1738 dbSNP
rs1199395869 1746 dbSNP
rs1488888070 1751 dbSNP
rs1183332381 1754 dbSNP
rs1265887451 1755 dbSNP
rs1214889079 1760 dbSNP
rs1002170285 1761 dbSNP
rs1455764423 1762 dbSNP
rs955334483 1766 dbSNP
rs1383534948 1769 dbSNP
rs552060160 1771 dbSNP
rs1338201083 1772 dbSNP
rs1383066651 1772 dbSNP
rs941415293 1772 dbSNP
rs1028082929 1773 dbSNP
rs368512533 1773 dbSNP
rs1313489167 1774 dbSNP
rs1337340709 1775 dbSNP
rs1239596300 1776 dbSNP
rs1280771438 1776 dbSNP
rs1348521299 1779 dbSNP
rs1206896068 1781 dbSNP
rs996619389 1783 dbSNP
rs868518327 1784 dbSNP
rs1177930198 1785 dbSNP
rs1183094428 1785 dbSNP
rs1254465499 1785 dbSNP
rs1421259738 1785 dbSNP
rs536748638 1785 dbSNP
rs542776471 1785 dbSNP
rs1299817398 1786 dbSNP
rs1406199861 1786 dbSNP
rs1025455936 1787 dbSNP
rs892993256 1788 dbSNP
rs1384560968 1793 dbSNP
rs79202780 1796 dbSNP
rs1032719775 1797 dbSNP
rs1223067685 1797 dbSNP
rs1254501599 1797 dbSNP
rs1285221002 1797 dbSNP
rs1313063932 1797 dbSNP
rs1481774916 1803 dbSNP
rs1303591852 1804 dbSNP
rs998596259 1811 dbSNP
rs749749700 1814 dbSNP
rs1482348992 1816 dbSNP
rs547742628 1817 dbSNP
rs1429295438 1828 dbSNP
rs1479831548 1838 dbSNP
rs1173415141 1847 dbSNP
rs138502719 1850 dbSNP
rs853287 1851 dbSNP
rs1045404747 1855 dbSNP
rs1394099935 1856 dbSNP
rs1406656638 1862 dbSNP
rs1303697533 1865 dbSNP
rs867916882 1873 dbSNP
rs1191961292 1874 dbSNP
rs1428250320 1884 dbSNP
rs1257272167 1890 dbSNP
rs1309452993 1891 dbSNP
rs1408089629 1896 dbSNP
rs1228495885 1898 dbSNP
rs1200713519 1903 dbSNP
rs1484026315 1906 dbSNP
rs1251066961 1908 dbSNP
rs949640646 1910 dbSNP
rs896722801 1918 dbSNP
rs1270215431 1921 dbSNP
rs1055408165 1927 dbSNP
rs1263280235 1932 dbSNP
rs1279969016 1933 dbSNP
rs1224994095 1934 dbSNP
rs1325693729 1935 dbSNP
rs938160251 1939 dbSNP
rs1426336306 1940 dbSNP
rs920128456 1941 dbSNP
rs1291838359 1942 dbSNP
rs1403072390 1942 dbSNP
rs1404171923 1947 dbSNP
rs1382923201 1950 dbSNP
rs1336177873 1951 dbSNP
rs1466147664 1957 dbSNP
rs1363362005 1959 dbSNP
rs1248618837 1963 dbSNP
rs974121176 1975 dbSNP
rs559954690 1978 dbSNP
rs549296581 1983 dbSNP
rs1261932589 1987 dbSNP
rs1169105346 1988 dbSNP
rs1400661924 1998 dbSNP
rs1461891718 2005 dbSNP
rs1369474077 2011 dbSNP
rs529521421 2013 dbSNP
rs940124447 2019 dbSNP
rs1190034010 2022 dbSNP
rs1403489837 2025 dbSNP
rs563629259 2029 dbSNP
rs1346978360 2030 dbSNP
rs908513159 2031 dbSNP
rs986830532 2033 dbSNP
rs12817966 2034 dbSNP
rs12817799 2035 dbSNP
rs1454822757 2039 dbSNP
rs1316104748 2043 dbSNP
rs1182474954 2045 dbSNP
rs955585015 2046 dbSNP
rs12817793 2050 dbSNP
rs921160294 2053 dbSNP
rs1259400954 2054 dbSNP
rs1214454947 2055 dbSNP
rs12817648 2056 dbSNP
rs12819187 2072 dbSNP
rs1338667094 2080 dbSNP
rs1265744062 2082 dbSNP
rs1462364038 2089 dbSNP
rs1242263812 2090 dbSNP
rs975340602 2094 dbSNP
rs1178784971 2098 dbSNP
rs957194405 2100 dbSNP
rs1158491552 2101 dbSNP
rs1409877231 2109 dbSNP
rs1471054615 2111 dbSNP
rs1246647358 2117 dbSNP
rs1032814479 2121 dbSNP
rs1380863066 2124 dbSNP
rs998970840 2126 dbSNP
rs1228377918 2131 dbSNP
rs1285857749 2133 dbSNP
rs1325114317 2136 dbSNP
rs1314583132 2145 dbSNP
rs543937055 2147 dbSNP
rs1379275418 2161 dbSNP
rs577575158 2173 dbSNP
rs1206313568 2175 dbSNP
rs1233291987 2180 dbSNP
rs1480240480 2182 dbSNP
rs1179962690 2188 dbSNP
rs1409763056 2189 dbSNP
rs1326927712 2193 dbSNP
rs1177318528 2199 dbSNP
rs1424721109 2206 dbSNP
rs1413021570 2219 dbSNP
rs1172967627 2229 dbSNP
rs967168068 2229 dbSNP
rs1392007691 2230 dbSNP
rs1306725930 2231 dbSNP
rs1165364307 2233 dbSNP
rs1456676100 2234 dbSNP
rs1383026032 2235 dbSNP
rs1162587025 2238 dbSNP
rs1439892061 2244 dbSNP
rs1239536973 2247 dbSNP
rs1179029982 2251 dbSNP
rs1024504738 2252 dbSNP
rs1267897762 2253 dbSNP
rs1211453414 2264 dbSNP
rs1202861987 2266 dbSNP
rs1356949665 2272 dbSNP
rs1270945048 2279 dbSNP
rs1490512801 2281 dbSNP
rs1290735087 2284 dbSNP
rs1013903717 2297 dbSNP
rs1055378766 2298 dbSNP
rs1429495341 2301 dbSNP
rs1277864380 2308 dbSNP
rs1441478066 2323 dbSNP
rs1332208625 2325 dbSNP
rs1002466528 2326 dbSNP
rs1322251357 2327 dbSNP
rs1328880356 2342 dbSNP
rs1432372650 2343 dbSNP
rs564143229 2347 dbSNP
rs1364086582 2354 dbSNP
rs1403612341 2355 dbSNP
rs1038568475 2359 dbSNP
rs1365386027 2373 dbSNP
rs940069005 2374 dbSNP
rs1299186383 2375 dbSNP
rs908610554 2383 dbSNP
rs1051637871 2389 dbSNP
rs1409631506 2412 dbSNP
rs185196180 2413 dbSNP
rs934002913 2415 dbSNP
rs72488364 2416 dbSNP
rs1187039354 2422 dbSNP
rs1378159859 2430 dbSNP
rs113290058 2432 dbSNP
rs1200978088 2435 dbSNP
rs1283785 2440 dbSNP
rs1163192683 2443 dbSNP
rs1267984227 2445 dbSNP
rs1216993124 2447 dbSNP
rs1387877233 2448 dbSNP
rs1401923183 2449 dbSNP
rs1318487033 2451 dbSNP
rs1489393846 2456 dbSNP
rs1282375980 2457 dbSNP
rs553265702 2461 dbSNP
rs975267091 2464 dbSNP
rs1383302059 2469 dbSNP
rs1243892036 2479 dbSNP
rs536035901 2486 dbSNP
rs957286327 2491 dbSNP
rs1276657264 2508 dbSNP
rs1222297578 2516 dbSNP
rs1352830792 2525 dbSNP
rs1345422195 2535 dbSNP
rs1206937109 2536 dbSNP
rs1279250279 2537 dbSNP
rs542427716 2537 dbSNP
rs1182845078 2538 dbSNP
rs369176373 2540 dbSNP
rs1346635922 2554 dbSNP
rs895626262 2561 dbSNP
rs1245280404 2563 dbSNP
rs925764904 2565 dbSNP
rs1187353725 2568 dbSNP
rs1315734559 2579 dbSNP
rs1036892577 2590 dbSNP
rs386761109 2592 dbSNP
rs1471466020 2609 dbSNP
rs1004084369 2610 dbSNP
rs1410615409 2615 dbSNP
rs1399737668 2633 dbSNP
rs1338305043 2637 dbSNP
rs1406473187 2651 dbSNP
rs1395226662 2660 dbSNP
rs1331990274 2661 dbSNP
rs888400645 2663 dbSNP
rs1337437992 2669 dbSNP
rs1048308407 2672 dbSNP
rs1289019816 2675 dbSNP
rs1328584508 2695 dbSNP
rs932283195 2696 dbSNP
rs920960404 2711 dbSNP
rs1041176698 2714 dbSNP
rs556769480 2718 dbSNP
rs943823359 2721 dbSNP
rs977270008 2724 dbSNP
rs369061303 2727 dbSNP
rs988340052 2734 dbSNP
rs958199555 2738 dbSNP
rs1440013905 2742 dbSNP
rs925484579 2743 dbSNP
rs1250348030 2746 dbSNP
rs1471333127 2752 dbSNP
rs981038483 2772 dbSNP
rs1178043303 2776 dbSNP
rs1428425591 2778 dbSNP
rs1429513201 2784 dbSNP
rs1465275031 2790 dbSNP
rs969765277 2793 dbSNP
rs16924306 2801 dbSNP
rs1391830681 2803 dbSNP
rs1024055929 2805 dbSNP
rs1014454781 2806 dbSNP
rs1240121499 2811 dbSNP
rs1014069042 2831 dbSNP
rs1408073593 2833 dbSNP
rs958328343 2837 dbSNP
rs962192764 2838 dbSNP
rs1232838301 2855 dbSNP
rs1254591171 2856 dbSNP
rs531213423 2859 dbSNP
rs551414448 2864 dbSNP
rs888284495 2868 dbSNP
rs562553615 2870 dbSNP
rs117295320 2871 dbSNP
rs1200928440 2872 dbSNP
rs1267463508 2875 dbSNP
rs1432190445 2880 dbSNP
rs899476120 2885 dbSNP
rs1196307274 2887 dbSNP
rs1040752183 2892 dbSNP
rs1259222726 2897 dbSNP
rs1220877227 2900 dbSNP
rs1360378893 2901 dbSNP
rs1269950294 2907 dbSNP
rs192230600 2911 dbSNP
rs529456721 2912 dbSNP
rs1304982730 2917 dbSNP
rs1429675164 2919 dbSNP
rs1368438497 2924 dbSNP
rs76760708 2925 dbSNP
rs1299486109 2929 dbSNP
rs1328482976 2935 dbSNP
rs1229598491 2936 dbSNP
rs1274428942 2942 dbSNP
rs1340596029 2944 dbSNP
rs1338134228 2945 dbSNP
rs913616165 2946 dbSNP
rs1265444460 2955 dbSNP
rs1487880431 2974 dbSNP
rs1467734851 2985 dbSNP
rs1052185650 2989 dbSNP
rs1405291146 3001 dbSNP
rs549960647 3007 dbSNP
rs375761017 3011 dbSNP
rs1187675304 3013 dbSNP
rs936799410 3016 dbSNP
rs1417207797 3031 dbSNP
rs1446326970 3036 dbSNP
rs187601904 3049 dbSNP
rs1350487308 3060 dbSNP
rs1457462968 3061 dbSNP
rs1291930999 3070 dbSNP
rs981007494 3075 dbSNP
rs1436112189 3079 dbSNP
rs1297269658 3086 dbSNP
rs1363467022 3087 dbSNP
rs543641134 3088 dbSNP
rs1181858273 3093 dbSNP
rs1460891974 3096 dbSNP
rs564104583 3107 dbSNP
rs969690791 3112 dbSNP
rs1258773039 3119 dbSNP
rs1465031870 3121 dbSNP
rs1207752810 3128 dbSNP
rs917909386 3144 dbSNP
rs1182297221 3149 dbSNP
rs541010005 3152 dbSNP
rs1306268495 3156 dbSNP
rs1272755202 3175 dbSNP
rs1414318816 3181 dbSNP
rs992206738 3183 dbSNP
rs1320153228 3189 dbSNP
rs760914059 3196 dbSNP
rs1450625950 3200 dbSNP
rs925855074 3210 dbSNP
rs572134351 3213 dbSNP
rs1379052861 3214 dbSNP
rs1227130166 3221 dbSNP
rs962362114 3231 dbSNP
rs1329243293 3232 dbSNP
rs1227336590 3234 dbSNP
rs750479448 3235 dbSNP
rs1014924207 3236 dbSNP
rs984861409 3238 dbSNP
rs952520610 3244 dbSNP
rs767618165 3252 dbSNP
rs1449985787 3255 dbSNP
rs113907773 3263 dbSNP
rs997162404 3266 dbSNP
rs1178880434 3268 dbSNP
rs1331429942 3273 dbSNP
rs558235598 3277 dbSNP
rs992553541 3278 dbSNP
rs11835091 3280 dbSNP
rs879795845 3281 dbSNP
rs1352634952 3282 dbSNP
rs1416428280 3285 dbSNP
rs1177178634 3289 dbSNP
rs573711742 3302 dbSNP
rs1007854066 3306 dbSNP
rs1351710716 3307 dbSNP
rs1408688542 3310 dbSNP
rs1285962743 3311 dbSNP
rs1387340197 3312 dbSNP
rs116542036 3314 dbSNP
rs1052156048 3316 dbSNP
rs1017180330 3321 dbSNP
rs1277564732 3326 dbSNP
rs1238944654 3328 dbSNP
rs1206430965 3339 dbSNP
rs1179014528 3342 dbSNP
rs543511314 3345 dbSNP
rs1275256698 3348 dbSNP
rs1482710088 3356 dbSNP
rs936434848 3369 dbSNP
rs904004307 3372 dbSNP
rs1045297971 3377 dbSNP
rs11832676 3383 dbSNP
rs557916578 3384 dbSNP
rs1490956881 3389 dbSNP
rs1413111108 3392 dbSNP
rs1170950631 3397 dbSNP
rs750524732 3400 dbSNP
rs1429729417 3406 dbSNP
rs143249920 3413 dbSNP
rs183248049 3426 dbSNP
rs1358268369 3429 dbSNP
rs1309372404 3437 dbSNP
rs763342592 3440 dbSNP
rs767755085 3444 dbSNP
rs1365126653 3446 dbSNP
rs1230298559 3448 dbSNP
rs984830230 3449 dbSNP
rs555743723 3453 dbSNP
rs1202973414 3455 dbSNP
rs1272487470 3459 dbSNP
rs952167781 3463 dbSNP
rs936002567 3464 dbSNP
rs1222481493 3487 dbSNP
rs775765922 3488 dbSNP
rs1190884910 3489 dbSNP
rs200165311 3489 dbSNP
rs945958353 3494 dbSNP
rs1301063244 3500 dbSNP
rs1449319019 3503 dbSNP
rs1424331281 3509 dbSNP
rs917067550 3516 dbSNP
rs1381076896 3519 dbSNP
rs1161411582 3528 dbSNP
rs78132170 3541 dbSNP
rs1417342116 3543 dbSNP
rs113837759 3545 dbSNP
rs964221710 3546 dbSNP
rs1320933213 3548 dbSNP
rs1364199031 3552 dbSNP
rs1226009260 3553 dbSNP
rs1285870211 3555 dbSNP
rs1019503168 3556 dbSNP
rs1008574847 3560 dbSNP
rs570121349 3564 dbSNP
rs535871170 3572 dbSNP
rs1357051270 3580 dbSNP
rs937185068 3582 dbSNP
rs1289307811 3583 dbSNP
rs927009928 3588 dbSNP
rs550364029 3592 dbSNP
rs1464714991 3598 dbSNP
rs769453825 3609 dbSNP
rs1187137864 3611 dbSNP
rs1370668203 3634 dbSNP
rs1473439721 3636 dbSNP
rs1162072545 3646 dbSNP
rs1030696155 3649 dbSNP
rs973185816 3650 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HEK293S
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in GSM1084078. RNA binding protein: AGO2. Condition:CLIP_nohippuristanol_rep2_AbnovaAb ...

- Karginov FV; Hannon GJ, 2013, Genes & development.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' uaacccaaaauUCUCAAGAAAu 5'
                     | |||||||| 
Target 5' ----------cAAAGUUCUUUu 3'
1 - 12
Article - Karginov FV; Hannon GJ
- Genes & development, 2013
When adapting to environmental stress, cells attenuate and reprogram their translational output. In part, these altered translation profiles are established through changes in the interactions between RNA-binding proteins and mRNAs. The Argonaute 2 (Ago2)/microRNA (miRNA) machinery has been shown to participate in stress-induced translational up-regulation of a particular mRNA, CAT-1; however, a detailed, transcriptome-wide understanding of the involvement of Ago2 in the process has been lacking. Here, we profiled the overall changes in Ago2-mRNA interactions upon arsenite stress by cross-linking immunoprecipitation (CLIP) followed by high-throughput sequencing (CLIP-seq). Ago2 displayed a significant remodeling of its transcript occupancy, with the majority of 3' untranslated region (UTR) and coding sequence (CDS) sites exhibiting stronger interaction. Interestingly, target sites that were destined for release from Ago2 upon stress were depleted in miRNA complementarity signatures, suggesting an alternative mode of interaction. To compare the changes in Ago2-binding patterns across transcripts with changes in their translational states, we measured mRNA profiles on ribosome/polysome gradients by RNA sequencing (RNA-seq). Increased Ago2 occupancy correlated with stronger repression of translation for those mRNAs, as evidenced by a shift toward lighter gradient fractions upon stress, while release of Ago2 was associated with the limited number of transcripts that remained translated. Taken together, these data point to a role for Ago2 and the mammalian miRNAs in mediating the translational component of the stress response.
LinkOut: [PMID: 23824327]
CLIP-seq Support 1 for dataset GSM1084078
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_nohippuristanol_rep2_AbnovaAb
Location of target site ENST00000326684.4 | 3UTR | CAAAGUUCUUUUUUUUUUUUUU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
Click to see details
Click to see details
174 hsa-miR-3133 Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT057804 SLC30A7 solute carrier family 30 member 7 2 2
MIRT075401 ZFHX3 zinc finger homeobox 3 2 2
MIRT088350 MAPRE3 microtubule associated protein RP/EB family member 3 2 6
MIRT107288 FAM73B mitoguardin 2 2 2
MIRT141571 ABHD2 abhydrolase domain containing 2 2 2
MIRT161036 CDV3 CDV3 homolog 2 2
MIRT167732 RNF146 ring finger protein 146 8 3
MIRT209559 PAK2 p21 (RAC1) activated kinase 2 2 2
MIRT214631 SMAD5 SMAD family member 5 2 8
MIRT258393 KIAA0895 KIAA0895 2 2
MIRT272744 ALG10B ALG10B, alpha-1,2-glucosyltransferase 2 2
MIRT309347 SMARCA5 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 2 6
MIRT329705 SCD stearoyl-CoA desaturase 2 2
MIRT336556 SDE2 SDE2 telomere maintenance homolog 2 2
MIRT363351 AGO2 argonaute 2, RISC catalytic component 2 4
MIRT386753 TAOK1 TAO kinase 1 2 2
MIRT441580 EXOC5 exocyst complex component 5 2 2
MIRT441735 SEPT8 septin 8 2 2
MIRT441817 LRRC40 leucine rich repeat containing 40 2 2
MIRT442180 TRIM59 tripartite motif containing 59 2 4
MIRT442277 TLX3 T-cell leukemia homeobox 3 2 2
MIRT442489 TBC1D19 TBC1 domain family member 19 2 2
MIRT443242 ANKRD26 ankyrin repeat domain 26 2 2
MIRT443270 ZWINT ZW10 interacting kinetochore protein 2 2
MIRT444114 CEPT1 choline/ethanolamine phosphotransferase 1 2 2
MIRT444725 LAMA2 laminin subunit alpha 2 2 2
MIRT445346 FAM169A family with sequence similarity 169 member A 2 2
MIRT445693 GJB1 gap junction protein beta 1 2 2
MIRT446051 CDC73 cell division cycle 73 2 2
MIRT447746 TMCC3 transmembrane and coiled-coil domain family 3 2 2
MIRT447955 AKR7A2 aldo-keto reductase family 7 member A2 2 2
MIRT449199 ZNF623 zinc finger protein 623 2 2
MIRT449564 GPC5 glypican 5 2 2
MIRT450938 BDP1 B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB 2 2
MIRT459811 POTED POTE ankyrin domain family member D 2 8
MIRT461692 ZNF426 zinc finger protein 426 2 2
MIRT462014 SNRNP27 small nuclear ribonucleoprotein U4/U6.U5 subunit 27 2 2
MIRT465150 TSC22D2 TSC22 domain family member 2 2 2
MIRT467144 SREK1IP1 SREK1 interacting protein 1 2 2
MIRT474929 KCTD15 potassium channel tetramerization domain containing 15 2 8
MIRT475118 IPPK inositol-pentakisphosphate 2-kinase 2 2
MIRT476844 FIGN fidgetin, microtubule severing factor 2 10
MIRT477336 EPHA2 EPH receptor A2 2 2
MIRT477853 DYRK3 dual specificity tyrosine phosphorylation regulated kinase 3 2 2
MIRT481113 B2M beta-2-microglobulin 2 2
MIRT481296 ATP6V1B2 ATPase H+ transporting V1 subunit B2 2 10
MIRT485094 SLC30A1 solute carrier family 30 member 1 2 4
MIRT491908 YWHAE tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein epsilon 2 2
MIRT492458 RBPJ recombination signal binding protein for immunoglobulin kappa J region 2 8
MIRT493341 LAPTM4A lysosomal protein transmembrane 4 alpha 2 12
MIRT494771 AP1G1 adaptor related protein complex 1 gamma 1 subunit 2 2
MIRT497837 GPR26 G protein-coupled receptor 26 2 2
MIRT497958 DGAT2 diacylglycerol O-acyltransferase 2 2 2
MIRT498445 INO80D INO80 complex subunit D 2 2
MIRT498997 HAT1 histone acetyltransferase 1 2 10
MIRT499257 VAV3 vav guanine nucleotide exchange factor 3 2 4
MIRT500067 SFT2D2 SFT2 domain containing 2 2 4
MIRT501385 RBFOX2 RNA binding protein, fox-1 homolog 2 2 10
MIRT503084 BTG2 BTG anti-proliferation factor 2 2 4
MIRT503272 SLC7A5 solute carrier family 7 member 5 2 2
MIRT504341 ASGR2 asialoglycoprotein receptor 2 2 2
MIRT505453 SUGT1 SGT1 homolog, MIS12 kinetochore complex assembly cochaperone 2 6
MIRT505905 RIMS3 regulating synaptic membrane exocytosis 3 2 6
MIRT507917 C7orf60 base methyltransferase of 25S rRNA 2 homolog 2 6
MIRT508174 FRK fyn related Src family tyrosine kinase 2 4
MIRT508287 YES1 YES proto-oncogene 1, Src family tyrosine kinase 2 4
MIRT509232 KIF14 kinesin family member 14 2 6
MIRT509481 GNL3L G protein nucleolar 3 like 2 6
MIRT509530 INTU inturned planar cell polarity protein 2 6
MIRT509548 BTLA B and T lymphocyte associated 2 8
MIRT511328 KIAA1522 KIAA1522 2 4
MIRT511427 HSP90AA1 heat shock protein 90 alpha family class A member 1 2 4
MIRT511477 HNRNPC heterogeneous nuclear ribonucleoprotein C (C1/C2) 2 4
MIRT512471 CCDC149 coiled-coil domain containing 149 2 2
MIRT512996 SEZ6L seizure related 6 homolog like 2 2
MIRT514755 ACER3 alkaline ceramidase 3 2 8
MIRT515764 KRTAP5-6 keratin associated protein 5-6 2 2
MIRT517392 TBK1 TANK binding kinase 1 2 4
MIRT518720 FTH1 ferritin heavy chain 1 2 2
MIRT521923 PHIP pleckstrin homology domain interacting protein 2 4
MIRT522849 KIAA2022 neurite extension and migration factor 2 4
MIRT522887 KDELR1 KDEL endoplasmic reticulum protein retention receptor 1 2 2
MIRT523153 HNRNPU heterogeneous nuclear ribonucleoprotein U 2 2
MIRT525149 ZNF256 zinc finger protein 256 2 2
MIRT525941 C11orf74 chromosome 11 open reading frame 74 2 2
MIRT526876 ERCC8 ERCC excision repair 8, CSA ubiquitin ligase complex subunit 2 2
MIRT527366 KRTAP13-2 keratin associated protein 13-2 2 2
MIRT527549 DLGAP5 DLG associated protein 5 2 4
MIRT527604 ANKRD42 ankyrin repeat domain 42 2 2
MIRT527803 KLRD1 killer cell lectin like receptor D1 2 2
MIRT528046 PRKD3 protein kinase D3 2 2
MIRT528397 PGK1 phosphoglycerate kinase 1 2 2
MIRT529673 SLC28A1 solute carrier family 28 member 1 2 2
MIRT530358 HPSE heparanase 2 2
MIRT530908 KIAA1161 myogenesis regulating glycosidase (putative) 2 2
MIRT531169 ZNF333 zinc finger protein 333 2 2
MIRT531438 PAK1 p21 (RAC1) activated kinase 1 2 2
MIRT531562 CENPC1P1 centromere protein C pseudogene 1 1 1
MIRT532783 LDHD lactate dehydrogenase D 2 2
MIRT532848 ZNF699 zinc finger protein 699 2 2
MIRT534287 SLC12A7 solute carrier family 12 member 7 2 2
MIRT535078 PPIG peptidylprolyl isomerase G 2 4
MIRT535968 MFAP3L microfibril associated protein 3 like 2 2
MIRT536163 MAP3K9 mitogen-activated protein kinase kinase kinase 9 2 4
MIRT537417 FBXO47 F-box protein 47 2 2
MIRT538665 CCSAP centriole, cilia and spindle associated protein 2 2
MIRT540291 RGR retinal G protein coupled receptor 2 4
MIRT543332 KIAA1456 KIAA1456 2 2
MIRT543392 CC2D2A coiled-coil and C2 domain containing 2A 2 2
MIRT543891 AIMP1 aminoacyl tRNA synthetase complex interacting multifunctional protein 1 2 2
MIRT545609 SIGLEC9 sialic acid binding Ig like lectin 9 2 2
MIRT545839 ZNF275 zinc finger protein 275 2 2
MIRT546689 RORA RAR related orphan receptor A 2 4
MIRT547513 MAT2A methionine adenosyltransferase 2A 2 4
MIRT549431 ACVR1 activin A receptor type 1 2 2
MIRT550567 MYC MYC proto-oncogene, bHLH transcription factor 2 4
MIRT552517 ZIC5 Zic family member 5 2 2
MIRT552743 YRDC yrdC N6-threonylcarbamoyltransferase domain containing 2 2
MIRT552942 VKORC1L1 vitamin K epoxide reductase complex subunit 1 like 1 2 2
MIRT555752 PDCD10 programmed cell death 10 2 2
MIRT558002 FAM160B1 family with sequence similarity 160 member B1 2 2
MIRT559422 ASF1B anti-silencing function 1B histone chaperone 2 2
MIRT560276 SF1 splicing factor 1 2 2
MIRT560713 ZNF324B zinc finger protein 324B 2 2
MIRT561190 TNFRSF10A TNF receptor superfamily member 10a 2 2
MIRT561817 NUP50 nucleoporin 50 2 2
MIRT562018 LCLAT1 lysocardiolipin acyltransferase 1 2 2
MIRT562847 LINC00346 long intergenic non-protein coding RNA 346 2 2
MIRT563252 SETD6 SET domain containing 6 2 2
MIRT563978 GCC2 GRIP and coiled-coil domain containing 2 2 2
MIRT564383 BAAT bile acid-CoA:amino acid N-acyltransferase 2 2
MIRT566552 PANK3 pantothenate kinase 3 2 2
MIRT566933 LIN28B lin-28 homolog B 2 2
MIRT566989 LBR lamin B receptor 2 2
MIRT567645 EXT1 exostosin glycosyltransferase 1 2 2
MIRT568268 BICD2 BICD cargo adaptor 2 2 2
MIRT571407 MED4 mediator complex subunit 4 2 2
MIRT571784 PPP2CA protein phosphatase 2 catalytic subunit alpha 2 2
MIRT572437 ATM ATM serine/threonine kinase 2 2
MIRT573613 COX6A1P2 cytochrome c oxidase subunit 6A1 pseudogene 2 2 2
MIRT574289 COX6A1 cytochrome c oxidase subunit 6A1 2 2
MIRT574375 YY1 YY1 transcription factor 2 2
MIRT613142 DSEL dermatan sulfate epimerase-like 2 2
MIRT616661 ORAI1 ORAI calcium release-activated calcium modulator 1 2 2
MIRT619345 SASH1 SAM and SH3 domain containing 1 2 2
MIRT626315 ABCC9 ATP binding cassette subfamily C member 9 2 2
MIRT628235 FAM117B family with sequence similarity 117 member B 2 2
MIRT630452 GTPBP8 GTP binding protein 8 (putative) 2 2
MIRT631013 TMEM30B transmembrane protein 30B 2 2
MIRT637315 FBXO18 F-box protein, helicase, 18 2 2
MIRT640658 FRY FRY microtubule binding protein 2 2
MIRT642081 FUT11 fucosyltransferase 11 2 2
MIRT644607 C17orf77 chromosome 17 open reading frame 77 2 2
MIRT644829 DNAJC21 DnaJ heat shock protein family (Hsp40) member C21 2 2
MIRT652465 TMEM2 transmembrane protein 2 2 2
MIRT657514 HAS2 hyaluronan synthase 2 2 2
MIRT658290 FAM86C1 family with sequence similarity 86 member C1 2 2
MIRT659570 CGGBP1 CGG triplet repeat binding protein 1 2 2
MIRT675457 SRP19 signal recognition particle 19 2 2
MIRT687828 ITGB8 integrin subunit beta 8 2 2
MIRT693550 MYO16 myosin XVI 2 2
MIRT697294 ZNF654 zinc finger protein 654 2 2
MIRT699804 SEC24A SEC24 homolog A, COPII coat complex component 2 2
MIRT704867 CD164 CD164 molecule 2 2
MIRT705309 AVL9 AVL9 cell migration associated 2 2
MIRT705323 ATP2A2 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 2 2 2
MIRT707180 HOXC4 homeobox C4 2 2
MIRT709331 CLEC12B C-type lectin domain family 12 member B 2 2
MIRT712321 PER2 period circadian clock 2 2 2
MIRT713817 XRCC2 X-ray repair cross complementing 2 2 2
MIRT713854 HHLA2 HERV-H LTR-associating 2 2 2
MIRT717257 SLC44A1 solute carrier family 44 member 1 2 2
MIRT719956 BLOC1S6 biogenesis of lysosomal organelles complex 1 subunit 6 2 2
MIRT725408 KIF6 kinesin family member 6 2 2
miRNA-Drug Associations
miRNA Small Melocule FDA CID Detection Method Condition PMID Year Expression Pattern of miRNA
miR-3133 5-Fluorouracil approved 3385 Microarray CNE cells 22614822 2012 up-regulated
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-3133 Imatinib 5291 NSC743414 approved sensitive High Gastrointestinal Stromal Tumor cell line (882R-NC, 882R-OE, 882R-KD)
hsa-mir-3133 Androstenedione+Anastrozole sensitive cell line (MCF-7)
hsa-mir-3133 Cisplatin 5460033 NSC119875 approved sensitive cell line (BxPC3)
hsa-miR-3133 Gefitinib 123631 NSC715055 approved sensitive cell line (PC9)
hsa-miR-3133 Gefitinib 123631 NSC715055 approved resistant cell line (HCC827)
hsa-miR-3133 Osimertinib 71496458 NSC779217 approved resistant cell line (HCC827)
hsa-miR-3133 Gefitinib 123631 NSC715055 approved resistant cell line (HCC827)
hsa-miR-3133 Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-3133 Gemcitabine 60750 NSC613327 approved resistant cell line (PANC-1) (1500 ng/ml)

Error report submission