pre-miRNA Information
pre-miRNA hsa-mir-4301   
Genomic Coordinates chr11: 113450023 - 113450088
Description Homo sapiens miR-4301 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-4301
Sequence 11| UCCCACUACUUCACUUGUGA |30
Evidence Experimental
Experiments SOLiD
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs184176277 2 dbSNP
rs1191324913 13 dbSNP
rs1369198005 15 dbSNP
rs1036973189 16 dbSNP
rs944900541 18 dbSNP
Putative Targets

miRNA Expression profile
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol CMKLR1   
Synonyms CHEMERINR, ChemR23, DEZ, RVER1
Description chemerin chemokine-like receptor 1
Transcript NM_001142343   
Other Transcripts NM_001142344 , NM_001142345 , NM_004072   
Expression
Putative miRNA Targets on CMKLR1
3'UTR of CMKLR1
(miRNA target sites are highlighted)
>CMKLR1|NM_001142343|3'UTR
   1 TCCTCACTGTGGAACCCCTCAATGGACTCTCTCAACCCAGGGACACCCAAGGATATGTCTTCTGAAGATCAAGGCAAGAA
  81 CCTCTTTAGCATCCACCAATTTTCACTGCATTTTGCATGGGATGAACAGTGTTTTATGCTGGGAATCTAGGGCCTGGAAC
 161 CCCTTTCTTCTAGTGGACAGAACATGCTGTGTTCCATACAGCCTTGGACTAGCAATTTATGCTTCTTGGGAGGCCAGCCT
 241 TGACTGACTCAAAGCAAAAAAGGAAGAATTCTCAAAAGCATTGCCATGAACTGGGATTGGCATAGGGCGGTGGGATTAAG
 321 CTGCCTATTGTGTGTGCCCCAGAAATGACACTCTCCAAGGTCCATTCCTGGTGTGAGCAGTGAGGGGGTCAGAGCAAACC
 401 CAGTGTGATGCAGATCACACTTGGCCCTTGTATATATATTATCAGTAGCTGGCCAGAAAACCCTACCTTCAAGTCACTGC
 481 TCTGTGTTAAAGTATGTGGAAATGCATAGGTGATCTGGGAGAGGAAGGTGACATATCAGCCCATGAACTCCATAGGCCAT
 561 GAATTTGGCTTTCGGATCAGCTAGGAAGACAGAGAACTGGTCCTGAGAGGTCCTGTGGGCTCTTTGCAAGGGCAAGACAA
 641 GTGAGGGATGCAACGAGGACTTGAGATTTGGCAAAGAAATGAGAAAGGAGAAAAGAACCTTTAAAGGATGCAGGCATGGA
 721 GCAGCTCACCCTAGAACATCGCAGGCTGATGGTGCTTTAGGCTGGAGCTATTTGGGGCGTCAGGGTGGTGCCAGCCCCTG
 801 ATCTCACCTTGCCCCTCTTACCTGGGGGTGGGGTTGTGGCAGGCATCTTCACCAGCAGCCCTCACCCCATCACAGGGATT
 881 TTTTTCTGCCTTTCCTAATCCACTCAGCTCTGGCTGGAGGTGCTTAGAATAAAACACTGGTGGTGGGGCTTCTCATTCTG
 961 GTTAATTTCCTCAACGCCTTTGGAGACAGGTCCAAAATGCAGCTTTGGGAAGCAACTCCGGAGAGTCCCCTGGGAAGAAG
1041 AGTATGTCCGAGGACTCAGTCACTTGAGACAGAGTCTGGAGCTGGACTCCTTGAACTGTGTTTCTGAGCTGCAGACACCA
1121 AATACCTCCTGGATACAGGTGCCTGGCATGGCTTTTCTCATCTAATACTGACACGTCCCTGTGGCCACAGAGTGTCATAG
1201 CCCCATTTACAAATGACATAGCTGAGGCCCAGATGGGGAAAGTAACTTGCCCAGCATCACACAGCTAATCAGTGGCAGAG
1281 TTAAGATCTGAACCTGGCTCCGTCTGGCTCCAGAAACTCTGTTCTTCTATTTGGAATTTATCTGTGGAGATTATTCTAGT
1361 ATATTGATAGCCTACATTTATTTAGCACTTTTTATATTATGCACTTTACATATGTTTTCTCATTTAATCATTACAGCAAC
1441 CCTGAGTTAGGTATGGTTATAACTTCCCTTTTACATAGGAGGAATCTGAGGCTTAGAGAGGTTAAGTAACTTGCCCAAAG
1521 GTACCCAGCTAGTCTCTGCCGGAGCTTGGATTTGAACTTCAGTTTGCCTGGCTCAAATGAGGCTGCAGAGTTGGGAAGGA
1601 CTTAAAAAGTTTGGAGATTTTTGCCATAAATATTGATTTTTCTGCAAATGAGGATGAACATCTTAATGGCCTTTAAGAAA
1681 CTTTGCAAATAGTTTTCAAAAATGATGCAACATGGCAGAGAAAATGCACTTGGCTTCCAGCTCCCTCAACAGCCATTAAC
1761 AGCCTCCTACCGTGGCTCCCACCTCCTATGTCTCCAGAGATCAAGGCAATGGGGAGGGAAAGCTGGCAGGAGGCAGTCCC
1841 TTGTGGGCCTGAGGCCCTTTGGCTCCTAAGTGTCCACATTCTGTTCTCTTCCAAGTCCCTTCATTGTTAAGCTGATTCTC
1921 CAACAAGATGCAATGAACAGATGCAATGTCTACCCCGCGCTGGGCGAGTTCCCGAGGCCATGGGCTGTTTGGAATCACAC
2001 TTCATTAAGAGACAAACTGTTCCTTCCCTTATTGTGCCTTAATGCTTATGACAAGGCAGCTCTGAATTGATCCCAAGCTG
2081 GAGCCTCTGAATGCTTTAAAGAGTTTGAATATAGACGGTTTGAGAGCAAAAAGGGAGCTTTAAATATTGCTCAGTGGCCC
2161 CCATCTCCCCTCTTCCCACATTTACTGAGGCACGAGATGGGATGGGACCTGTCCCGGGTCACAGCAGCAGTCGTCAGCGC
2241 CTTGGCCCTCCTGGCTTGTAGGATGCTGCTTTTCCTGGGCTTCTGGCAGTCCAGGCCAGGATGGGGGAGCCAGGAATTCA
2321 TGTTGTCATTGGAAAAGCTGATAAACAGGAGCACAATTCAAACCGGCTGTTTTCCTCCTTAGAGTCTGGCCTCCCTCTTT
2401 CTGGCTGCTCTGTGGGTCTTCCTGTTCTGACTTAGGTTCCTGTCAAGTACTTAAATGCAGCCTTAACATCCCATACAGTC
2481 TTGTCCCCACAGCTTCATGTGAACATCTCCATGGGTCATGCATATATCGTCCCTGCAGTGTGCAAAGTGTGCTCACCTGC
2561 ACTGCTGCACAGGCAACCAACATACTTAGTGCCCAGAGCCTTCTCTCTGGGCCCAGGACTCAGTGATGGGGCCTTACTTA
2641 GCCCTGCCTCCTGGGTGGGGTGGGGGAGCTGAGGGATCGTGAGGACAAGAGGTAGAGGGAAAAGAAAAGAAGATGGTGTT
2721 TGAGGATAGGGGAGGGACAGGAGAGGGGACAGAAAGGTCCCAGAGCATGATGATGAAGGAAAGGGATCTGGCATTCATGA
2801 AGCACCTACGATGGTTCAGGCACAAACACTGAAACCTCAAATTGGCCCTGGCAGAAGGGGACCATCATAGCAAGGTGGGG
2881 GGGGGGTGCAGAAAGTGAGTTTCTGTTTCAAGAACAGACTTCACTAGTTCAGAGTTGCACAGCTAGTGAGGTATGGAGCT
2961 GGGCTTTGAATCAGGTCAGCTGCCTGAATGCCCAACTTCTTCAGCCCTTGGAAGGAGAGGGTGGGGAGAAGAAGAAGGAA
3041 AAGACAAGGAAGAAAGAAAGAAGAGAGAAGGGGAGAGGAATGGAAGTCCAAAGAGTGGGAGGAATTTGATTTCAGAACCA
3121 TCTCCAGCTGACCCTTGAGCCAGCAAGGACAGGGAGAAGGGAAGAGCAAGAACACGAAGGGCCTCAAGCACCGGGATGCC
3201 TTTGCCAGCCTTAGATAATTCCCAGAGCGCACAGAGCCCTGCAGGTTCCTGGGTCCTTCTCCAGAGAAGAGGCACAGAGA
3281 TTCTGGCAGCAAGGTTCAGAAGGGGTGAGGAAACTGGGCACTGACAAAGGGAGGGGATTGGCTCAAATTCGACCCCAGAG
3361 TCAGCTCTGGTGGGGTTGGGAGCCTGGATGGGTGGGAGAAGATAGAATCCAATCGTGAAAACCATAAGGGACCTTCAAAC
3441 TCATCTTGCCCAGATGTCTCCCATTTCACAGATGAGGGAACTGAGGTTTTGAGAGCTTCCCCTGAGGACTCTGCAAAACG
3521 AGGTGGTGTCTGGTTTGGATGAAAGTGGTCGGTGATTCCTCAACTCCTGCCCTGCCTCCCTCTCTCGTTCCTCCCTAACA
3601 TGTTATGCTCTTGTTGGGGCTGGGATGCCCTAGGCCCAAGGTTACCAAATCCTGGGTTTGGAAAATTGCTGCTGGGGGTG
3681 GTATCTAGGACCAGAGAGGAATCTACTATTTCTACTGTGAAATAATTCAGCAGGGGGTCTTCTTACTTCTTCCCTTTGAG
3761 GACAAAGTTTCTCTCGAATAAAGAGACTGAAGCAAGA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' agUGUUCACUUCAUCACCCu 5'
            ||||  ||:|||| ||| 
Target 5' ggACAA--GAGGTAGAGGGa 3'
2683 - 2700 134.00 -16.30
2
miRNA  3' agUGUUCACUUCAUCACCCu 5'
            || | ||  ||:||||| 
Target 5' aaAC-ACTG--GTGGTGGGg 3'
932 - 948 133.00 -16.10
3
miRNA  3' aguGU-UCACUU--CAUCACCCu 5'
             || ||| |:   |:||||| 
Target 5' cccCAGAGTCAGCTCTGGTGGGg 3'
3353 - 3375 131.00 -13.80
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN15623702 2 COSMIC
COSN24304594 2 COSMIC
COSN31511723 4 COSMIC
COSN30521792 15 COSMIC
COSN31578269 20 COSMIC
COSN26971086 27 COSMIC
COSN30492196 43 COSMIC
COSN30504626 44 COSMIC
COSN24532296 50 COSMIC
COSN30145874 62 COSMIC
COSN31564866 67 COSMIC
COSN30136665 78 COSMIC
COSN5315130 83 COSMIC
COSN30183599 84 COSMIC
COSN30128672 89 COSMIC
COSN31509434 98 COSMIC
COSN15227685 104 COSMIC
COSN30485345 119 COSMIC
COSN31511308 119 COSMIC
COSN31516904 133 COSMIC
COSN30534087 136 COSMIC
COSN31526061 143 COSMIC
COSN1141596 153 COSMIC
COSN31602109 180 COSMIC
COSN30124117 213 COSMIC
COSN31576886 241 COSMIC
COSN1141595 271 COSMIC
COSN30037030 308 COSMIC
COSN26232461 424 COSMIC
COSN16254389 480 COSMIC
COSN17190653 727 COSMIC
COSN25086043 765 COSMIC
COSN17386075 852 COSMIC
COSN23540102 886 COSMIC
COSN26325729 919 COSMIC
COSN16899443 961 COSMIC
COSN20456626 987 COSMIC
COSN7309393 1020 COSMIC
COSN21389917 1151 COSMIC
COSN21625591 1344 COSMIC
COSN29908270 1394 COSMIC
COSN16293274 1520 COSMIC
COSN17661083 1549 COSMIC
COSN5712313 1575 COSMIC
COSN21153479 1676 COSMIC
COSN16539278 1761 COSMIC
COSN28426288 1855 COSMIC
COSN15806217 1882 COSMIC
COSN28403510 2268 COSMIC
COSN27382706 2363 COSMIC
COSN5831106 2431 COSMIC
COSN8693911 2553 COSMIC
COSN19245680 2574 COSMIC
COSN17636174 2586 COSMIC
COSN21748287 2593 COSMIC
COSN17181913 2666 COSMIC
COSN18858994 2679 COSMIC
COSN22235143 2802 COSMIC
COSN32139313 2866 COSMIC
COSN1556611 2876 COSMIC
COSN1141594 2877 COSMIC
COSN28894126 2884 COSMIC
COSN15190472 3175 COSMIC
COSN30025290 3229 COSMIC
COSN5929729 3361 COSMIC
COSN17357056 3441 COSMIC
COSN6613007 3469 COSMIC
COSN24868451 3563 COSMIC
COSN8693910 3569 COSMIC
COSN28231187 3737 COSMIC
COSN23484334 3791 COSMIC
rs2044480 x rs170413 2842 GWAS
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs368924782 2 dbSNP
rs1245664059 5 dbSNP
rs981440031 9 dbSNP
rs1181921191 10 dbSNP
rs1189113935 17 dbSNP
rs375044878 18 dbSNP
rs751032636 20 dbSNP
rs1166659062 21 dbSNP
rs765997637 22 dbSNP
rs758039612 23 dbSNP
rs1335985940 24 dbSNP
rs1047524277 28 dbSNP
rs1275253019 31 dbSNP
rs971808298 40 dbSNP
rs1020336722 42 dbSNP
rs1226770555 47 dbSNP
rs994391442 48 dbSNP
rs35364794 49 dbSNP
rs989317699 52 dbSNP
rs901430528 55 dbSNP
rs145106333 69 dbSNP
rs942870821 75 dbSNP
rs911415023 77 dbSNP
rs867645188 78 dbSNP
rs535571845 82 dbSNP
rs947153008 93 dbSNP
rs912876199 95 dbSNP
rs1265910088 97 dbSNP
rs1330551129 104 dbSNP
rs988888090 104 dbSNP
rs1208846658 105 dbSNP
rs568029029 115 dbSNP
rs928537789 117 dbSNP
rs774244126 118 dbSNP
rs969865307 120 dbSNP
rs1183584331 123 dbSNP
rs1319373685 124 dbSNP
rs1384218639 128 dbSNP
rs889027997 137 dbSNP
rs1472164000 150 dbSNP
rs768594495 163 dbSNP
rs1028868349 174 dbSNP
rs1414493842 177 dbSNP
rs1385528794 185 dbSNP
rs1156406194 186 dbSNP
rs1016116522 187 dbSNP
rs1357874217 189 dbSNP
rs763176183 192 dbSNP
rs1303972972 193 dbSNP
rs1373027077 194 dbSNP
rs1408412201 199 dbSNP
rs1385282422 202 dbSNP
rs527853930 209 dbSNP
rs952909260 213 dbSNP
rs1025610732 219 dbSNP
rs994568499 235 dbSNP
rs901214223 237 dbSNP
rs150365545 244 dbSNP
rs1309995094 261 dbSNP
rs1212106993 275 dbSNP
rs775578795 278 dbSNP
rs1515632 286 dbSNP
rs1448472696 287 dbSNP
rs1261326135 290 dbSNP
rs534449753 301 dbSNP
rs887562697 306 dbSNP
rs745666994 308 dbSNP
rs190099308 309 dbSNP
rs781643293 314 dbSNP
rs1473049058 321 dbSNP
rs552141877 322 dbSNP
rs1190887703 327 dbSNP
rs771387930 328 dbSNP
rs747536980 332 dbSNP
rs1428148302 334 dbSNP
rs1310258384 341 dbSNP
rs1356276694 349 dbSNP
rs947100672 352 dbSNP
rs878950699 358 dbSNP
rs778057973 364 dbSNP
rs1271216740 368 dbSNP
rs560854967 375 dbSNP
rs927492156 379 dbSNP
rs891529492 382 dbSNP
rs1364844908 383 dbSNP
rs533356341 388 dbSNP
rs1220472367 389 dbSNP
rs563122511 393 dbSNP
rs938327342 394 dbSNP
rs950054585 399 dbSNP
rs1276495967 407 dbSNP
rs913242529 409 dbSNP
rs1221082766 414 dbSNP
rs1245226110 418 dbSNP
rs1489483851 427 dbSNP
rs1191854860 432 dbSNP
rs928348228 433 dbSNP
rs1390040307 434 dbSNP
rs979983558 437 dbSNP
rs988852639 438 dbSNP
rs1391132945 442 dbSNP
rs1405186940 450 dbSNP
rs948621866 457 dbSNP
rs1365724126 458 dbSNP
rs758771061 461 dbSNP
rs909023310 462 dbSNP
rs186841338 463 dbSNP
rs957672895 474 dbSNP
rs1033091695 478 dbSNP
rs1363902679 483 dbSNP
rs1432804663 486 dbSNP
rs182197285 488 dbSNP
rs1342548679 495 dbSNP
rs950609504 496 dbSNP
rs1168373522 497 dbSNP
rs1476296335 506 dbSNP
rs1026130437 510 dbSNP
rs1222666490 511 dbSNP
rs972880284 516 dbSNP
rs1463628876 525 dbSNP
rs997861322 529 dbSNP
rs561718518 535 dbSNP
rs1480878124 539 dbSNP
rs1161831479 541 dbSNP
rs540234660 547 dbSNP
rs1007054741 553 dbSNP
rs890052078 560 dbSNP
rs7310684 561 dbSNP
rs1322417249 569 dbSNP
rs887522262 573 dbSNP
rs541920158 574 dbSNP
rs546107969 580 dbSNP
rs892004653 583 dbSNP
rs1001671361 591 dbSNP
rs1229077423 600 dbSNP
rs1053274073 604 dbSNP
rs1267791797 619 dbSNP
rs1337936580 621 dbSNP
rs7310562 626 dbSNP
rs1224447022 633 dbSNP
rs556327446 638 dbSNP
rs1442361484 642 dbSNP
rs757963176 652 dbSNP
rs117232552 654 dbSNP
rs1239574486 655 dbSNP
rs950331106 656 dbSNP
rs118153847 659 dbSNP
rs562937844 669 dbSNP
rs571670886 676 dbSNP
rs1160762908 680 dbSNP
rs552966609 684 dbSNP
rs1413839595 695 dbSNP
rs909116202 698 dbSNP
rs534589249 700 dbSNP
rs1348766662 710 dbSNP
rs78240488 711 dbSNP
rs367555104 712 dbSNP
rs1348862429 714 dbSNP
rs1230240837 722 dbSNP
rs926004008 740 dbSNP
rs1344485466 741 dbSNP
rs929127937 752 dbSNP
rs919130209 765 dbSNP
rs558142890 768 dbSNP
rs1443315515 778 dbSNP
rs554072801 779 dbSNP
rs146662932 785 dbSNP
rs1431761126 794 dbSNP
rs921747857 803 dbSNP
rs1363845188 805 dbSNP
rs1189672315 812 dbSNP
rs1404303649 813 dbSNP
rs985437209 814 dbSNP
rs1435027734 821 dbSNP
rs975968414 828 dbSNP
rs1477763946 830 dbSNP
rs1411892727 832 dbSNP
rs966346274 833 dbSNP
rs1014880453 836 dbSNP
rs1004918599 839 dbSNP
rs951702389 840 dbSNP
rs1277053218 845 dbSNP
rs1349252809 859 dbSNP
rs954071295 863 dbSNP
rs1456836225 871 dbSNP
rs551175948 876 dbSNP
rs1206832601 885 dbSNP
rs905634200 894 dbSNP
rs1450493991 925 dbSNP
rs1196134738 935 dbSNP
rs1379235464 941 dbSNP
rs1454645803 945 dbSNP
rs1167956203 947 dbSNP
rs1388055139 948 dbSNP
rs756493550 959 dbSNP
rs1168669545 964 dbSNP
rs1390296030 975 dbSNP
rs529301201 976 dbSNP
rs956369834 977 dbSNP
rs74632257 987 dbSNP
rs2280169 988 dbSNP
rs768135060 992 dbSNP
rs1296114184 1005 dbSNP
rs925972625 1015 dbSNP
rs906965285 1019 dbSNP
rs568115813 1020 dbSNP
rs1355221629 1023 dbSNP
rs1012570246 1027 dbSNP
rs1181047590 1029 dbSNP
rs533760794 1029 dbSNP
rs922744477 1030 dbSNP
rs528447944 1032 dbSNP
rs887481224 1036 dbSNP
rs1049442849 1049 dbSNP
rs143307480 1050 dbSNP
rs1451027389 1054 dbSNP
rs1170897241 1055 dbSNP
rs907751701 1056 dbSNP
rs919043934 1057 dbSNP
rs1040222943 1061 dbSNP
rs944094444 1062 dbSNP
rs912631492 1063 dbSNP
rs545745471 1068 dbSNP
rs985551613 1070 dbSNP
rs759834451 1074 dbSNP
rs1204705779 1078 dbSNP
rs530858014 1080 dbSNP
rs914584197 1085 dbSNP
rs990769199 1087 dbSNP
rs1339144797 1089 dbSNP
rs572971639 1093 dbSNP
rs78943618 1096 dbSNP
rs1027305706 1098 dbSNP
rs1274714759 1098 dbSNP
rs554670280 1098 dbSNP
rs1207561102 1111 dbSNP
rs1271850952 1117 dbSNP
rs542019020 1124 dbSNP
rs574727984 1125 dbSNP
rs139854393 1133 dbSNP
rs1421890813 1136 dbSNP
rs1311262696 1137 dbSNP
rs969790097 1140 dbSNP
rs1003030788 1143 dbSNP
rs1418895190 1146 dbSNP
rs1024099871 1148 dbSNP
rs1014800836 1157 dbSNP
rs1390992921 1160 dbSNP
rs1226888993 1166 dbSNP
rs568913409 1175 dbSNP
rs1308498382 1177 dbSNP
rs1453282587 1184 dbSNP
rs1381150745 1187 dbSNP
rs1032314506 1202 dbSNP
rs1300881352 1204 dbSNP
rs1000383079 1205 dbSNP
rs971579531 1227 dbSNP
rs1320484087 1228 dbSNP
rs190422017 1232 dbSNP
rs1227463297 1237 dbSNP
rs1012705164 1240 dbSNP
rs540252411 1241 dbSNP
rs901213102 1246 dbSNP
rs1216378144 1260 dbSNP
rs1255359824 1261 dbSNP
rs887406253 1264 dbSNP
rs1212766721 1267 dbSNP
rs576889497 1276 dbSNP
rs1048723096 1284 dbSNP
rs944509972 1285 dbSNP
rs907720367 1293 dbSNP
rs1486374369 1295 dbSNP
rs551790746 1298 dbSNP
rs558538758 1301 dbSNP
rs539717021 1302 dbSNP
rs1370404097 1305 dbSNP
rs1408803733 1308 dbSNP
rs897753056 1311 dbSNP
rs1374811945 1312 dbSNP
rs1284671309 1321 dbSNP
rs1246002355 1329 dbSNP
rs569535593 1342 dbSNP
rs1236483671 1347 dbSNP
rs979764673 1348 dbSNP
rs142932160 1350 dbSNP
rs1203259471 1360 dbSNP
rs1024445463 1361 dbSNP
rs531948697 1362 dbSNP
rs535650759 1367 dbSNP
rs1190688910 1371 dbSNP
rs1049768513 1372 dbSNP
rs1265429163 1385 dbSNP
rs932743570 1396 dbSNP
rs568345070 1400 dbSNP
rs1389917437 1410 dbSNP
rs773012162 1411 dbSNP
rs990180812 1413 dbSNP
rs1031823594 1421 dbSNP
rs1280381929 1421 dbSNP
rs1355920504 1427 dbSNP
rs184433101 1430 dbSNP
rs1360042107 1434 dbSNP
rs1303848162 1435 dbSNP
rs904780821 1440 dbSNP
rs1442975202 1451 dbSNP
rs879330571 1452 dbSNP
rs1341137852 1456 dbSNP
rs528580301 1468 dbSNP
rs1348677068 1470 dbSNP
rs1164631186 1472 dbSNP
rs570731351 1475 dbSNP
rs1469914976 1477 dbSNP
rs1194752114 1478 dbSNP
rs1429531926 1479 dbSNP
rs996768156 1490 dbSNP
rs1447968536 1495 dbSNP
rs1422090978 1506 dbSNP
rs901188147 1515 dbSNP
rs1410183022 1517 dbSNP
rs1163688808 1521 dbSNP
rs982139682 1524 dbSNP
rs1462584390 1525 dbSNP
rs1326454217 1532 dbSNP
rs1476644079 1535 dbSNP
rs552547448 1537 dbSNP
rs536239122 1538 dbSNP
rs971548270 1539 dbSNP
rs570833950 1540 dbSNP
rs991197108 1541 dbSNP
rs191600208 1545 dbSNP
rs951792271 1548 dbSNP
rs866554094 1550 dbSNP
rs1336987691 1553 dbSNP
rs1214399756 1563 dbSNP
rs1489149302 1565 dbSNP
rs1027702287 1576 dbSNP
rs993162667 1579 dbSNP
rs1220704945 1582 dbSNP
rs897527568 1590 dbSNP
rs1243028182 1594 dbSNP
rs748508045 1598 dbSNP
rs930505235 1608 dbSNP
rs920472709 1609 dbSNP
rs1307923714 1610 dbSNP
rs1259733941 1615 dbSNP
rs779723243 1617 dbSNP
rs879023002 1626 dbSNP
rs980024716 1646 dbSNP
rs1320263786 1649 dbSNP
rs1345513552 1653 dbSNP
rs1388614259 1659 dbSNP
rs888910529 1688 dbSNP
rs1365549256 1692 dbSNP
rs1234189791 1697 dbSNP
rs948364324 1702 dbSNP
rs1293499284 1703 dbSNP
rs1225955342 1707 dbSNP
rs547639285 1711 dbSNP
rs1442166283 1712 dbSNP
rs1208468933 1714 dbSNP
rs1254886071 1727 dbSNP
rs1486441273 1728 dbSNP
rs992929517 1729 dbSNP
rs1410553741 1733 dbSNP
rs1468174988 1738 dbSNP
rs1160184185 1742 dbSNP
rs1408629113 1743 dbSNP
rs1413637915 1749 dbSNP
rs1403013927 1750 dbSNP
rs138737275 1751 dbSNP
rs1168992955 1762 dbSNP
rs1377348073 1765 dbSNP
rs745533953 1765 dbSNP
rs1415598301 1767 dbSNP
rs780790245 1770 dbSNP
rs932710893 1771 dbSNP
rs527897902 1772 dbSNP
rs924402937 1773 dbSNP
rs542189499 1774 dbSNP
rs968864968 1782 dbSNP
rs934676954 1784 dbSNP
rs76108603 1785 dbSNP
rs369436101 1788 dbSNP
rs542402656 1800 dbSNP
rs1211095158 1803 dbSNP
rs1250654086 1809 dbSNP
rs541090339 1814 dbSNP
rs577034466 1818 dbSNP
rs867166870 1819 dbSNP
rs991667263 1820 dbSNP
rs368435515 1829 dbSNP
rs952339103 1830 dbSNP
rs77035688 1831 dbSNP
rs1435130220 1838 dbSNP
rs1048514904 1847 dbSNP
rs1394613983 1858 dbSNP
rs994639578 1862 dbSNP
rs899014541 1868 dbSNP
rs1330667709 1874 dbSNP
rs1044272758 1877 dbSNP
rs948649723 1879 dbSNP
rs972261218 1883 dbSNP
rs751536420 1897 dbSNP
rs1228128889 1904 dbSNP
rs961703537 1918 dbSNP
rs1019031145 1927 dbSNP
rs764182886 1929 dbSNP
rs1300692872 1931 dbSNP
rs777493941 1938 dbSNP
rs1008746392 1940 dbSNP
rs1391970233 1942 dbSNP
rs1450592943 1945 dbSNP
rs1191622240 1948 dbSNP
rs889045820 1950 dbSNP
rs1028896165 1953 dbSNP
rs917186469 1954 dbSNP
rs543412880 1956 dbSNP
rs148550214 1957 dbSNP
rs752395656 1958 dbSNP
rs557611490 1959 dbSNP
rs1328433698 1960 dbSNP
rs1172865763 1963 dbSNP
rs535780982 1965 dbSNP
rs765103763 1966 dbSNP
rs551471631 1973 dbSNP
rs1229134525 1974 dbSNP
rs1270435884 1975 dbSNP
rs903143957 1977 dbSNP
rs1375515993 1991 dbSNP
rs188586237 1999 dbSNP
rs976015612 2001 dbSNP
rs553172518 2003 dbSNP
rs534751141 2014 dbSNP
rs965650532 2019 dbSNP
rs759619153 2024 dbSNP
rs1020328325 2028 dbSNP
rs1194119889 2031 dbSNP
rs1368118231 2033 dbSNP
rs916150949 2034 dbSNP
rs1474233212 2056 dbSNP
rs757969507 2060 dbSNP
rs1167173389 2063 dbSNP
rs991762089 2066 dbSNP
rs144842686 2080 dbSNP
rs1176678938 2081 dbSNP
rs1287679336 2084 dbSNP
rs1457185779 2091 dbSNP
rs748039019 2100 dbSNP
rs184297449 2112 dbSNP
rs552432916 2116 dbSNP
rs1318497936 2117 dbSNP
rs962122863 2121 dbSNP
rs911530882 2125 dbSNP
rs3179574 2130 dbSNP
rs1294588361 2138 dbSNP
rs987085864 2142 dbSNP
rs953072804 2143 dbSNP
rs374910053 2152 dbSNP
rs1028864854 2158 dbSNP
rs149429396 2160 dbSNP
rs1205515233 2165 dbSNP
rs531738570 2169 dbSNP
rs1355917075 2170 dbSNP
rs1307764096 2173 dbSNP
rs1031253593 2177 dbSNP
rs1384061714 2179 dbSNP
rs1336576800 2185 dbSNP
rs1157513443 2186 dbSNP
rs1366066989 2188 dbSNP
rs1394587777 2193 dbSNP
rs548486374 2194 dbSNP
rs998925796 2198 dbSNP
rs903277508 2201 dbSNP
rs1045876421 2209 dbSNP
rs1301850723 2213 dbSNP
rs1138433 2215 dbSNP
rs1314383816 2217 dbSNP
rs1381595158 2224 dbSNP
rs894517606 2230 dbSNP
rs559560344 2232 dbSNP
rs528239371 2233 dbSNP
rs1189397771 2235 dbSNP
rs191838957 2238 dbSNP
rs1036953525 2239 dbSNP
rs1946 2240 dbSNP
rs543182203 2246 dbSNP
rs774525944 2248 dbSNP
rs911624359 2252 dbSNP
rs1252827682 2253 dbSNP
rs987221611 2255 dbSNP
rs575976866 2257 dbSNP
rs1420201664 2274 dbSNP
rs947125084 2275 dbSNP
rs921047415 2296 dbSNP
rs1437003451 2302 dbSNP
rs769074173 2303 dbSNP
rs556094657 2304 dbSNP
rs1461221986 2314 dbSNP
rs1295939108 2324 dbSNP
rs568959504 2327 dbSNP
rs140751727 2328 dbSNP
rs747013620 2329 dbSNP
rs983453680 2331 dbSNP
rs1281240305 2341 dbSNP
rs1307127865 2351 dbSNP
rs542090225 2354 dbSNP
rs958211582 2356 dbSNP
rs781055999 2364 dbSNP
rs188550878 2365 dbSNP
rs1311622099 2367 dbSNP
rs553113051 2368 dbSNP
rs1030804654 2374 dbSNP
rs1251686194 2384 dbSNP
rs1455810604 2385 dbSNP
rs1194641108 2390 dbSNP
rs1419332449 2391 dbSNP
rs969455774 2393 dbSNP
rs534880257 2408 dbSNP
rs1355720944 2421 dbSNP
rs1462076271 2424 dbSNP
rs1295817281 2428 dbSNP
rs2059596 2430 dbSNP
rs879431587 2433 dbSNP
rs1303877963 2436 dbSNP
rs1391389414 2439 dbSNP
rs1164903411 2448 dbSNP
rs970570980 2450 dbSNP
rs1024390865 2460 dbSNP
rs746558936 2461 dbSNP
rs894444279 2477 dbSNP
rs1035588045 2481 dbSNP
rs1213155833 2485 dbSNP
rs1271412320 2491 dbSNP
rs1055823417 2493 dbSNP
rs995073218 2498 dbSNP
rs147240798 2501 dbSNP
rs1474642553 2503 dbSNP
rs903138546 2507 dbSNP
rs1421216434 2510 dbSNP
rs1477830659 2511 dbSNP
rs1163572008 2513 dbSNP
rs1415115441 2519 dbSNP
rs1462921380 2525 dbSNP
rs777375800 2528 dbSNP
rs1261223592 2529 dbSNP
rs1193084810 2531 dbSNP
rs1290794255 2532 dbSNP
rs758220710 2533 dbSNP
rs1362902533 2535 dbSNP
rs1232975364 2539 dbSNP
rs1042696505 2542 dbSNP
rs2162289 2562 dbSNP
rs899555037 2580 dbSNP
rs912096313 2587 dbSNP
rs117738112 2589 dbSNP
rs764878069 2594 dbSNP
rs1488413257 2599 dbSNP
rs921576806 2607 dbSNP
rs1186837544 2623 dbSNP
rs989564329 2624 dbSNP
rs1475915482 2630 dbSNP
rs1163733318 2632 dbSNP
rs548621962 2632 dbSNP
rs754838576 2638 dbSNP
rs183442423 2647 dbSNP
rs1414371379 2649 dbSNP
rs1398900355 2650 dbSNP
rs1311311619 2655 dbSNP
rs1331147873 2660 dbSNP
rs565989995 2662 dbSNP
rs1415476642 2667 dbSNP
rs1279429787 2668 dbSNP
rs76303647 2678 dbSNP
rs974028017 2679 dbSNP
rs970538396 2687 dbSNP
rs532331218 2713 dbSNP
rs1389849019 2720 dbSNP
rs766640060 2721 dbSNP
rs193215844 2725 dbSNP
rs549815812 2731 dbSNP
rs754749394 2733 dbSNP
rs538030039 2738 dbSNP
rs1486329983 2740 dbSNP
rs1187621910 2741 dbSNP
rs1421791833 2745 dbSNP
rs992669322 2747 dbSNP
rs1193192587 2753 dbSNP
rs960845925 2758 dbSNP
rs1478421269 2759 dbSNP
rs1380623740 2771 dbSNP
rs1433898554 2773 dbSNP
rs767837447 2775 dbSNP
rs1171933354 2783 dbSNP
rs1248524739 2787 dbSNP
rs958792492 2793 dbSNP
rs1451549656 2803 dbSNP
rs998679853 2809 dbSNP
rs1034470059 2810 dbSNP
rs903106168 2812 dbSNP
rs1370667549 2814 dbSNP
rs750460176 2826 dbSNP
rs531329358 2827 dbSNP
rs1277681013 2829 dbSNP
rs143927511 2830 dbSNP
rs899512018 2835 dbSNP
rs542227995 2840 dbSNP
rs1206485634 2841 dbSNP
rs17041392 2842 dbSNP
rs558203826 2845 dbSNP
rs538252934 2846 dbSNP
rs1396732927 2847 dbSNP
rs559617694 2851 dbSNP
rs890583696 2853 dbSNP
rs866128919 2858 dbSNP
rs1331901526 2861 dbSNP
rs1411760209 2862 dbSNP
rs1448785494 2863 dbSNP
rs1332553920 2868 dbSNP
rs1397813492 2874 dbSNP
rs1394415913 2875 dbSNP
rs887004755 2876 dbSNP
rs397763590 2877 dbSNP
rs541391192 2877 dbSNP
rs1211788331 2878 dbSNP
rs565562007 2878 dbSNP
rs900247211 2879 dbSNP
rs916549736 2879 dbSNP
rs961069023 2880 dbSNP
rs992201756 2880 dbSNP
rs977185771 2881 dbSNP
rs1053562644 2882 dbSNP
rs1229288472 2882 dbSNP
rs1021470986 2883 dbSNP
rs936330026 2883 dbSNP
rs112262364 2884 dbSNP
rs964019925 2884 dbSNP
rs35400559 2885 dbSNP
rs978378210 2885 dbSNP
rs61703444 2886 dbSNP
rs949302663 2886 dbSNP
rs369424168 2887 dbSNP
rs539279698 2887 dbSNP
rs796573526 2887 dbSNP
rs998540454 2887 dbSNP
rs756662711 2889 dbSNP
rs1477711693 2896 dbSNP
rs917729091 2912 dbSNP
rs990640979 2916 dbSNP
rs1381525885 2919 dbSNP
rs1378745104 2923 dbSNP
rs1046853562 2927 dbSNP
rs1181014536 2928 dbSNP
rs959217763 2939 dbSNP
rs76713757 2946 dbSNP
rs150841716 2950 dbSNP
rs1480362560 2954 dbSNP
rs554961451 2963 dbSNP
rs1014927992 2975 dbSNP
rs1005067396 2992 dbSNP
rs368805607 2996 dbSNP
rs916874423 3003 dbSNP
rs1280254829 3008 dbSNP
rs1216996149 3011 dbSNP
rs890720119 3012 dbSNP
rs1461045413 3016 dbSNP
rs1296321065 3018 dbSNP
rs1030568125 3031 dbSNP
rs1056865146 3032 dbSNP
rs1302374058 3038 dbSNP
rs374620938 3041 dbSNP
rs188949103 3048 dbSNP
rs1242222893 3055 dbSNP
rs996280975 3058 dbSNP
rs1306923423 3063 dbSNP
rs1374461121 3067 dbSNP
rs1330443149 3069 dbSNP
rs1458606166 3075 dbSNP
rs1213667870 3077 dbSNP
rs900707531 3083 dbSNP
rs1448400262 3086 dbSNP
rs10861889 3101 dbSNP
rs1332409365 3106 dbSNP
rs936440195 3114 dbSNP
rs554093261 3117 dbSNP
rs914389877 3119 dbSNP
rs989973602 3121 dbSNP
rs1039982842 3126 dbSNP
rs1425199941 3135 dbSNP
rs538573164 3138 dbSNP
rs752062883 3139 dbSNP
rs763368651 3148 dbSNP
rs79904291 3153 dbSNP
rs949064337 3156 dbSNP
rs917823886 3170 dbSNP
rs1325166174 3172 dbSNP
rs1018190913 3173 dbSNP
rs1055086676 3175 dbSNP
rs1182833265 3176 dbSNP
rs369862121 3179 dbSNP
rs919778631 3192 dbSNP
rs148021541 3193 dbSNP
rs567016208 3196 dbSNP
rs963511673 3199 dbSNP
rs1233165620 3200 dbSNP
rs1025374610 3204 dbSNP
rs1323816733 3205 dbSNP
rs907837032 3206 dbSNP
rs993897948 3209 dbSNP
rs548716486 3228 dbSNP
rs1264648441 3229 dbSNP
rs777090846 3230 dbSNP
rs1038540337 3236 dbSNP
rs73199586 3238 dbSNP
rs533448649 3245 dbSNP
rs965206110 3260 dbSNP
rs1344434230 3265 dbSNP
rs1032512005 3283 dbSNP
rs1398362420 3288 dbSNP
rs1056725956 3293 dbSNP
rs563154937 3294 dbSNP
rs1000995845 3302 dbSNP
rs1414257340 3303 dbSNP
rs559749614 3305 dbSNP
rs61934532 3307 dbSNP
rs939321003 3309 dbSNP
rs902249993 3316 dbSNP
rs114092786 3317 dbSNP
rs1229434903 3317 dbSNP
rs1381028482 3321 dbSNP
rs1201057089 3324 dbSNP
rs1213959699 3332 dbSNP
rs143624722 3336 dbSNP
rs61934531 3340 dbSNP
rs1414380735 3343 dbSNP
rs946791327 3348 dbSNP
rs1013255592 3350 dbSNP
rs896187811 3351 dbSNP
rs915364440 3355 dbSNP
rs1417635171 3356 dbSNP
rs571862723 3358 dbSNP
rs989901470 3359 dbSNP
rs1407481023 3362 dbSNP
rs1412076390 3372 dbSNP
rs1332238887 3380 dbSNP
rs1361015672 3381 dbSNP
rs1449333789 3398 dbSNP
rs1279521907 3400 dbSNP
rs1055016249 3402 dbSNP
rs1179816150 3409 dbSNP
rs937946324 3414 dbSNP
rs112417453 3415 dbSNP
rs919730604 3417 dbSNP
rs1310526026 3424 dbSNP
rs1263372587 3425 dbSNP
rs1353971870 3430 dbSNP
rs942555105 3432 dbSNP
rs1487009243 3442 dbSNP
rs911098803 3443 dbSNP
rs1260115245 3450 dbSNP
rs1210644902 3451 dbSNP
rs748035862 3462 dbSNP
rs1222209668 3463 dbSNP
rs1437809415 3466 dbSNP
rs752827863 3471 dbSNP
rs1180269847 3479 dbSNP
rs778972329 3485 dbSNP
rs986753474 3490 dbSNP
rs1453974194 3495 dbSNP
rs148898897 3501 dbSNP
rs1287482473 3504 dbSNP
rs1232380530 3508 dbSNP
rs529417038 3519 dbSNP
rs907934499 3523 dbSNP
rs1332429280 3525 dbSNP
rs983537483 3528 dbSNP
rs1370791313 3533 dbSNP
rs1232018423 3540 dbSNP
rs1025300822 3542 dbSNP
rs954700339 3547 dbSNP
rs754748393 3550 dbSNP
rs974925457 3551 dbSNP
rs1294700707 3552 dbSNP
rs965005927 3554 dbSNP
rs1200504530 3558 dbSNP
rs1016697784 3562 dbSNP
rs1467892458 3563 dbSNP
rs74832344 3564 dbSNP
rs895331700 3565 dbSNP
rs1478512871 3571 dbSNP
rs1001025492 3578 dbSNP
rs1421633876 3586 dbSNP
rs967322535 3587 dbSNP
rs1003782915 3595 dbSNP
rs1394158199 3601 dbSNP
rs1385464818 3602 dbSNP
rs1209838242 3604 dbSNP
rs1326011973 3608 dbSNP
rs1332454803 3612 dbSNP
rs1020709004 3613 dbSNP
rs902804809 3614 dbSNP
rs543663596 3616 dbSNP
rs1013349746 3620 dbSNP
rs1276994251 3620 dbSNP
rs1172333258 3622 dbSNP
rs1220345003 3625 dbSNP
rs1258636446 3630 dbSNP
rs896115773 3634 dbSNP
rs1042365262 3636 dbSNP
rs548794512 3639 dbSNP
rs1002501804 3640 dbSNP
rs898397771 3641 dbSNP
rs1038715748 3651 dbSNP
rs1191208936 3666 dbSNP
rs759793200 3671 dbSNP
rs939867217 3678 dbSNP
rs1417754288 3681 dbSNP
rs1456898642 3682 dbSNP
rs531897649 3683 dbSNP
rs942503482 3685 dbSNP
rs1405541774 3701 dbSNP
rs750668074 3703 dbSNP
rs182200757 3715 dbSNP
rs1401321988 3717 dbSNP
rs933916206 3718 dbSNP
rs540310312 3728 dbSNP
rs1339800238 3736 dbSNP
rs923249299 3737 dbSNP
rs972353684 3738 dbSNP
rs974759614 3745 dbSNP
rs1260286008 3749 dbSNP
rs943389661 3762 dbSNP
rs1217030633 3763 dbSNP
rs1489425494 3767 dbSNP
rs925557702 3770 dbSNP
rs543171413 3775 dbSNP
rs966869192 3776 dbSNP
rs375112987 3792 dbSNP
rs1422554845 3794 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HEK293S
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in GSM1084078. RNA binding protein: AGO2. Condition:CLIP_nohippuristanol_rep2_AbnovaAb ...

- Karginov FV; Hannon GJ, 2013, Genes & development.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' aguguucacuucaUCACCCu 5'
                       |||||| 
Target 5' ----------aagAGUGGGa 3'
1 - 10
Article - Karginov FV; Hannon GJ
- Genes & development, 2013
When adapting to environmental stress, cells attenuate and reprogram their translational output. In part, these altered translation profiles are established through changes in the interactions between RNA-binding proteins and mRNAs. The Argonaute 2 (Ago2)/microRNA (miRNA) machinery has been shown to participate in stress-induced translational up-regulation of a particular mRNA, CAT-1; however, a detailed, transcriptome-wide understanding of the involvement of Ago2 in the process has been lacking. Here, we profiled the overall changes in Ago2-mRNA interactions upon arsenite stress by cross-linking immunoprecipitation (CLIP) followed by high-throughput sequencing (CLIP-seq). Ago2 displayed a significant remodeling of its transcript occupancy, with the majority of 3' untranslated region (UTR) and coding sequence (CDS) sites exhibiting stronger interaction. Interestingly, target sites that were destined for release from Ago2 upon stress were depleted in miRNA complementarity signatures, suggesting an alternative mode of interaction. To compare the changes in Ago2-binding patterns across transcripts with changes in their translational states, we measured mRNA profiles on ribosome/polysome gradients by RNA sequencing (RNA-seq). Increased Ago2 occupancy correlated with stronger repression of translation for those mRNAs, as evidenced by a shift toward lighter gradient fractions upon stress, while release of Ago2 was associated with the limited number of transcripts that remained translated. Taken together, these data point to a role for Ago2 and the mammalian miRNAs in mediating the translational component of the stress response.
LinkOut: [PMID: 23824327]
CLIP-seq Support 1 for dataset GSM1084078
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_nohippuristanol_rep2_AbnovaAb
Location of target site ENST00000312143.7 | 3UTR | AAGAGUGGGAGGAAUUU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
83 hsa-miR-4301 Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT081134 LDLR low density lipoprotein receptor 2 4
MIRT090911 ARHGEF26 Rho guanine nucleotide exchange factor 26 2 2
MIRT229436 MECP2 methyl-CpG binding protein 2 2 2
MIRT274717 CPSF6 cleavage and polyadenylation specific factor 6 2 2
MIRT350957 BACH1 BTB domain and CNC homolog 1 2 2
MIRT386722 NUFIP2 NUFIP2, FMR1 interacting protein 2 2 2
MIRT446022 PEX3 peroxisomal biogenesis factor 3 2 2
MIRT481303 ATP5G3 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9) 2 14
MIRT483959 ZNF354B zinc finger protein 354B 2 6
MIRT495667 TUBAL3 tubulin alpha like 3 2 2
MIRT496554 TBX15 T-box 15 2 2
MIRT497702 ARL6IP6 ADP ribosylation factor like GTPase 6 interacting protein 6 2 2
MIRT498105 RMND5A required for meiotic nuclear division 5 homolog A 2 2
MIRT512535 SEMA4D semaphorin 4D 2 2
MIRT512556 MFN2 mitofusin 2 2 6
MIRT521465 RABGAP1 RAB GTPase activating protein 1 2 6
MIRT526236 C2orf15 chromosome 2 open reading frame 15 2 2
MIRT526743 HLA-DOB major histocompatibility complex, class II, DO beta 2 2
MIRT527578 BRD7 bromodomain containing 7 2 4
MIRT528038 WT1 Wilms tumor 1 2 2
MIRT528267 GPRIN2 G protein regulated inducer of neurite outgrowth 2 2 2
MIRT528505 HTR7 5-hydroxytryptamine receptor 7 2 4
MIRT528758 RPS27 ribosomal protein S27 2 6
MIRT528999 IPO9 importin 9 2 2
MIRT529701 MRPL30 mitochondrial ribosomal protein L30 2 2
MIRT529781 C17orf82 chromosome 17 open reading frame 82 2 2
MIRT533797 TMEM119 transmembrane protein 119 2 6
MIRT535308 PHF12 PHD finger protein 12 2 2
MIRT535917 MKL2 MKL1/myocardin like 2 2 2
MIRT544892 OSBPL1A oxysterol binding protein like 1A 2 2
MIRT555423 PPIC peptidylprolyl isomerase C 2 2
MIRT562068 KLHL15 kelch like family member 15 2 2
MIRT565623 SLC31A1 solute carrier family 31 member 1 2 2
MIRT565661 SIX1 SIX homeobox 1 2 2
MIRT570138 IL1RL2 interleukin 1 receptor like 2 2 2
MIRT571045 YRDC yrdC N6-threonylcarbamoyltransferase domain containing 2 2
MIRT621232 LMAN1 lectin, mannose binding 1 2 2
MIRT622272 SH3TC2 SH3 domain and tetratricopeptide repeats 2 2 2
MIRT623844 GAN gigaxonin 2 2
MIRT626158 NFYA nuclear transcription factor Y subunit alpha 2 2
MIRT626464 CMKLR1 chemerin chemokine-like receptor 1 2 2
MIRT632087 ALDH1A2 aldehyde dehydrogenase 1 family member A2 2 2
MIRT637243 FAM26E calcium homeostasis modulator family member 5 2 2
MIRT642710 FGFR1OP2 FGFR1 oncogene partner 2 2 2
MIRT643611 KANSL3 KAT8 regulatory NSL complex subunit 3 2 2
MIRT644270 PAFAH1B1 platelet activating factor acetylhydrolase 1b regulatory subunit 1 2 2
MIRT645470 SPIN3 spindlin family member 3 2 2
MIRT649193 DNPEP aspartyl aminopeptidase 2 2
MIRT650776 POP4 POP4 homolog, ribonuclease P/MRP subunit 2 2
MIRT651345 ZC2HC1C zinc finger C2HC-type containing 1C 2 2
MIRT652237 TRAPPC3L trafficking protein particle complex 3 like 2 2
MIRT652587 TIMM8A translocase of inner mitochondrial membrane 8A 2 2
MIRT654591 PURA purine rich element binding protein A 2 2
MIRT654649 PTAFR platelet activating factor receptor 2 2
MIRT656842 KLF7 Kruppel like factor 7 2 2
MIRT657209 IKZF2 IKAROS family zinc finger 2 2 2
MIRT658513 ETV3 ETS variant 3 2 2
MIRT659448 CNNM2 cyclin and CBS domain divalent metal cation transport mediator 2 2 2
MIRT668816 CYLD CYLD lysine 63 deubiquitinase 2 2
MIRT669067 CELSR3 cadherin EGF LAG seven-pass G-type receptor 3 2 2
MIRT677711 ELOF1 elongation factor 1 homolog 2 4
MIRT687146 PTPN12 protein tyrosine phosphatase, non-receptor type 12 2 2
MIRT698498 THOC2 THO complex 2 2 2
MIRT707930 PPP1R3D protein phosphatase 1 regulatory subunit 3D 4 2
MIRT708737 FAM71F2 family with sequence similarity 71 member F2 2 2
MIRT710031 POLL DNA polymerase lambda 2 2
MIRT712175 STK4 serine/threonine kinase 4 2 2
MIRT715297 MAPK1 mitogen-activated protein kinase 1 2 2
MIRT716892 AGPAT6 glycerol-3-phosphate acyltransferase 4 2 2
MIRT717378 RBM41 RNA binding motif protein 41 2 2
MIRT718082 CLIC5 chloride intracellular channel 5 2 2
MIRT718721 ANKRD18A ankyrin repeat domain 18A 2 2
MIRT719152 DPYSL5 dihydropyrimidinase like 5 2 2
MIRT719224 CAMK4 calcium/calmodulin dependent protein kinase IV 2 2
MIRT719528 SRCIN1 SRC kinase signaling inhibitor 1 2 2
MIRT719861 KLF2 Kruppel like factor 2 2 2
MIRT720326 CAMK2G calcium/calmodulin dependent protein kinase II gamma 2 2
MIRT721596 SREBF1 sterol regulatory element binding transcription factor 1 2 2
MIRT722020 NEBL nebulette 2 2
MIRT722484 QSOX1 quiescin sulfhydryl oxidase 1 2 2
MIRT722614 TEAD1 TEA domain transcription factor 1 2 2
MIRT723664 RPTN repetin 2 2
MIRT723939 SVOP SV2 related protein 2 2
miRNA-Drug Associations
miRNA Small Melocule FDA CID Detection Method Condition PMID Year Expression Pattern of miRNA
miR-4 Dexamethasone approved 5743 Microarray primary rat thymocytes 20847043 2010 up-regulated
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-4301 Cisplatin 5460033 NSC119875 approved sensitive High Hepatocellular Carcinoma cell line (Hep3B, 97L)
hsa-miR-4301 Imatinib 5291 NSC743414 approved resistant High Chronic Myelogenous Leukemia cell line (K562)
hsa-mir-4301 Paclitaxel 36314 NSC125973 approved resistant cell line (BAS)
hsa-mir-4301 Paclitaxel 36314 NSC125973 approved sensitive cell line (W1)
hsa-mir-4301 Doxorubicin 31703 NSC123127 approved sensitive cell line (W1)
hsa-mir-4301 Methotrexate 126941 NSC740 approved sensitive cell line (W1)
hsa-mir-4301 Topotecan 60699 NSC609699 approved sensitive cell line (W1)
hsa-miR-4301 Gefitinib 123631 NSC715055 approved resistant cell line (PC9)
hsa-miR-4301 Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)

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