pre-miRNA Information
pre-miRNA hsa-mir-4680   
Genomic Coordinates chr10: 110898090 - 110898155
Description Homo sapiens miR-4680 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-4680-5p
Sequence 5| AGAACUCUUGCAGUCUUAGAUGU |27
Evidence Experimental
Experiments Illumina
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1274530692 2 dbSNP
rs780271274 5 dbSNP
rs1461423681 7 dbSNP
rs749729920 8 dbSNP
rs1252920446 10 dbSNP
rs201739274 11 dbSNP
rs774971106 19 dbSNP
rs748132091 22 dbSNP
rs773643180 22 dbSNP
rs1235425484 23 dbSNP
Putative Targets

Gene Information
Gene Symbol SLC30A6   
Synonyms MST103, MSTP103, ZNT6
Description solute carrier family 30 member 6
Transcript NM_017964   
Expression
Putative miRNA Targets on SLC30A6
3'UTR of SLC30A6
(miRNA target sites are highlighted)
>SLC30A6|NM_017964|3'UTR
   1 TAGACTCTAACTTATTTTTATAAGGAATATTGACTCCTTGGCTTCCAATTTATTTAGTAATCCAACTTTGCATTGACTGT
  81 TTAATCATTTACTCTAAATGTTAGATAATAGTAGTCTTGTTCACATTTCATGAAACCTATGAAACTATATTTTTGTAAAA
 161 TGTATTTGTGACAGTGAAATCCTCGTAAATGTTAAAGGCTTTAAATAGGCTTCCTTTAGAAAATGTGTTTCTTTAAATTT
 241 GGATTTTGGTATCTTTGGTTTTGTAGTTGACTGCAGTGTGATGTGACCTTACCTTTATAAGAGCCACTTGATGGAGTAGA
 321 TCTGTCACATTACTAAGATACGATATTTCTTTTTTTTTCCGAGACGGAGTCTTGCTCTGCCACTGTGCCCGGCCAATACA
 401 TTATTATTAACTTAAGGCTGTACTTTATTAAGGCTTCCTTAGTTTTTGTTTTGTTTTGTTTTTTGAGATGGAGTCTCACT
 481 CTGTCGCCCAGGCTGGAATGCAGTGGCATGATCTCAGCTCACTGCAACCTCTGCCTCCTGAGTTCAAATGATTCTCCTGC
 561 CTCAGCCTCCCGAGTAGCTGGGATTACAGGCACCTGCCACCACGCCCAGCTAATTTTTGTATTTTTAGTAAAGACGGGGG
 641 ATTTCACCATGTTGGCCAGGCTGGTCTTGAACTCCTGACCTCATGATCCACCCACCTTAGCCTCCCAAAGTGCTGGGATT
 721 AGGTGTGAGCCACCGCACCTGGCCGATATTTTCTTTAATGAAATTTATAAATATGCTTCTTGAATAATACACATTTTGGG
 801 AAAGGGAAAAATGTCTGTTCAAAAAGTAAAAGTCTCTTTTATAGCTTTTCCAAACTTAATTGCTAAATTTTTCTTTGAGG
 881 TTCTCCTGAATTATGTCTTACAAACTAAAAGCAAAAATTTTTAGCAGAAATTTTGGAATACATTCTATCTAGCACAATTT
 961 GAATTTTTAATTATCAAGATTTTTGTTAAAGTTTCTCTCCTTTAAAAATTTTAGTACATTTGTAAATAGTCCATGGTTCT
1041 CAGTGTTTTATTTTGATTAAGTGACTACCCAACTTTTGGTGATATGCAGTGAAAGAATCCCAATTTTCTATGTTACATTT
1121 AATCAAATACTGACATAATGAATTTATCTTTCCTGACACATTTTCATTCATTGGCTTTTTAATTTCTTATTTTATTAACA
1201 AAATATATCAGATATATTACCAAAACACATGGAGTTCCATACATAATATGGAATTTGATGTCTTTTCAAGTTGCACAAAG
1281 AATTTGAGCATATATAATTTTACCAAAGCATAATGGACCTTAGATTATAGAATACAGCATTGTTAGGTCTGCAGTGGGCA
1361 GTTTCTTTTTGTTTTGCTTTGTCAAAAATGGGAAATTGTTAACTGTGATGAAATGTGAGAATTACATAGATTATGTTATT
1441 TTTTAGTTGTTTTCCAAATGCAGAGTTTAAGGACTTTCTAACATGGCTAGTATTACTTCCAAAAAGTATAACAAGCAGCA
1521 GTCACACATGACCTAGGAGGGTTTTTTATTGTTTTATTTTATTATGCATTCCATAACAGTTTTAAAATGGGATTTTGAGA
1601 ATGGACTTAACTTTCCTGGAATCCAATGCTCCTGGAGATTTATGACTTTCCCAGCCATCAGCCAGCTATCTAGAGAAGAT
1681 TTTTGTTTTTCTTTTGCAACAGTTTCTTCAGTCAACTCATTCACTTTCAAATAGGAGCAGCACTTTGAAATCCTTTTTCT
1761 TCACTGTGGATTAAAAACATCCAAGAAGCCATCTCTGTCAAGCAGAATTGTCATCTGTGGTAATAAGTGACCATGTCCTA
1841 AATACCTTTTTCTTAGTGAGGAGTTGGTCATTGTCTTTGGCATCTGCAACCCCTGTTCAGGCATGTGACCTGCTAAAGAA
1921 ATACAGCCTACACTACCTTGACTACTGGGGAAAATGATACTTCGTAAAATGTAATAAGGCAACCTGTTCCTTGGCCTTTA
2001 TCTTATGTTTTCCAACTATTACTGTATCTGTTATTGGTCTACTATTACAGGATGATTCTTCTTCCTCCATTGATCTCAAC
2081 TAAATATGAATTAGGGTCATGCATGAAATCTGAACTGCCGTGTCCTGAGTTATGGTTAAGAGGTATGTGCTGCCACCCCA
2161 TGCATGTCTTCCCCATCCCCATAGGATTTTAAAGTGTTCAGGTACCAAACACAGTTCTGTGTGAGGTTTTATGCCTACTT
2241 CCTCAACACCAATTCAGAGGCAACACCTGTGCATCTGTCCCACCAAAGGTGCTTTAATACCTACCTTCACTATTTGAGAA
2321 AGGACACTCACAGTTGCCTGTGGGTTATGAAAGAATTGGCCCTACGTCCTGCATGTAAGATGTTACAGGGGACATTGGGC
2401 CAGGCATTATTATATAGAGAAGTCTTATTTGCCAAGCTCTGACTAACTTCTGGATATGAAAATAAGGAACTTGCCCAGCA
2481 TAGGCCTATAGGCAGCAGCCTTACTAGTAAATCTTGCCACAGAATCACTTGAAGCTAGACAGAGAAAGAAGTTCAATTTA
2561 AATATTTGTCCCATTGTTTGTGATTAGGATGTAAGCTTTGTGGAATGTAATTAACCCTGCTTTACGAAGTCACCATATTA
2641 TAATAGGAAAAACACTGCCTAGGAGGCAAGAGATCTGAATTCCAGTTCTGATGCTGCCACTGTGTAAGGAAGTAGTTTTA
2721 TAACCCATGGGCAAATCATCTGAGCTTTCTCATCTGTAAAGTTAGGGAGAGGAATTAATTAGTTGATCTGTAAAATAATC
2801 AGCTTCAAAACGTTATGGCTAAATCTGTAGAATGTATGCCCAATTGCTAAACGGATGTTGTGCCCAGAATTTTATCTAGT
2881 GACTACCTCAACATACAGGCCAAGCGTTACCTACACCAACACCCAAGCCATTAATTTGAGGTGCCATGAGAATAGGTGAA
2961 CCACAGCCTAACACCATTTAGGTTTTTGTGTTTTTTTCAGGCTTGCCTCTACTTAAATATATTTAGATGAGAGAGTTCTC
3041 TTAGACTTCTTTCTTTGTAAGGAAGGGTTATTTGGGGAAGTGTTGGAAAAAAGATTAGGGCAGGGTACCCTTAGTTTATA
3121 TAGGGTACAAAAGAATGGGAAACATCTTCCCTTTCTTCTTTAATCTCTGAAGTCATGTTTGGAATTACATATAATGTAGC
3201 AGGTACTGGAGAGGACCTGAATTTCAAGCTTCTGATTTAGCTGTTTGTAAACTTCCAAGTTTTGCTTGACTAAAGAATGC
3281 TGATCTTTTTTGGGAGTCTGATCTCCTTCTAATATCAGAAAGTGCTTTTTATATTCCAGATTGCTTGAATTAAACTGTTT
3361 GGATTAAAGAACATATATGGAGTTTCCTCTCTGGTTTTAAATAATCTTTCTTTATTCAGTAGCTATTAATAATTTATCTC
3441 ATATTCAGCGAATATTTATTGAGAATATTGTTGAGAATCTCTTACATGCCAGGCACTATACTAAGTTAATATGCATTCAG
3521 TATACCAGTTGGTGTGACCCAGACCAAAGGTAACACAAAGATGAATGAGAATTCCTTCAAGGCGCCGATAATCCTAGTAG
3601 GAGAGCTAAGACACAAAACTGTTGCATGTTTTTAATCATCAAATTAAACTTCTTTCCACGTCCTTAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' ugUAGAUUCUGACGUUCUCAAGa 5'
            ||:| ||| || :||||||| 
Target 5' atATTT-AGA-TGAGAGAGTTCt 3'
3019 - 3039 163.00 -15.70
2
miRNA  3' uguaGAUUCUGACGUUCUCAAGa 5'
              |||:||  ||||||| || 
Target 5' ctgcCTAGGA-GGCAAGAGATCt 3'
2655 - 2676 138.00 -17.90
3
miRNA  3' uguAGAUUCUGACGUUCUCAAGa 5'
             || || | ||| ||||||: 
Target 5' tttTCCAA-A-TGC-AGAGTTTa 3'
1450 - 1469 137.00 -7.50
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN30522292 76 COSMIC
COSN28188326 131 COSMIC
COSN30209518 362 COSMIC
COSN32161571 368 COSMIC
COSN16996886 473 COSMIC
COSN20897330 595 COSMIC
COSN21763532 673 COSMIC
COSN22075737 760 COSMIC
COSN22749604 1542 COSMIC
COSN1836075 1549 COSMIC
COSN1836077 1743 COSMIC
COSN21722734 1824 COSMIC
COSN15814406 1854 COSMIC
COSN29074793 2176 COSMIC
COSN5791492 2534 COSMIC
COSN16963600 2685 COSMIC
COSN28201730 2791 COSMIC
COSN19473821 2828 COSMIC
COSN9370649 2906 COSMIC
COSN29979002 3055 COSMIC
COSN1237770 3070 COSMIC
COSN27712901 3570 COSMIC
COSN25762125 3602 COSMIC
COSN1836079 3644 COSMIC
rs72796891 1627 GWAS
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1265480466 1 dbSNP
rs1488718784 2 dbSNP
rs188923666 4 dbSNP
rs755328442 5 dbSNP
rs1384193700 10 dbSNP
rs1267141199 20 dbSNP
rs1223423034 21 dbSNP
rs1479214163 27 dbSNP
rs1247489350 33 dbSNP
rs778526858 34 dbSNP
rs578124810 35 dbSNP
rs1365544908 36 dbSNP
rs966846850 38 dbSNP
rs1299296021 42 dbSNP
rs559365700 43 dbSNP
rs528184429 49 dbSNP
rs746594573 51 dbSNP
rs192574477 66 dbSNP
rs1352090181 67 dbSNP
rs928734727 74 dbSNP
rs1019188625 77 dbSNP
rs541800942 81 dbSNP
rs753907534 84 dbSNP
rs1201355129 86 dbSNP
rs958760767 91 dbSNP
rs1246637667 95 dbSNP
rs1464610243 96 dbSNP
rs1187004416 100 dbSNP
rs1486926137 105 dbSNP
rs752975705 106 dbSNP
rs1194435271 110 dbSNP
rs1255145556 114 dbSNP
rs1215082779 118 dbSNP
rs1324538751 132 dbSNP
rs991676877 136 dbSNP
rs777086232 137 dbSNP
rs920078813 138 dbSNP
rs965992039 140 dbSNP
rs908781886 145 dbSNP
rs1452352114 146 dbSNP
rs1431465002 149 dbSNP
rs758971422 152 dbSNP
rs1468075548 164 dbSNP
rs921812148 165 dbSNP
rs545392824 168 dbSNP
rs1156664426 172 dbSNP
rs899615411 180 dbSNP
rs996528178 183 dbSNP
rs377105267 185 dbSNP
rs140503946 186 dbSNP
rs1365077201 192 dbSNP
rs1385691869 203 dbSNP
rs1201980144 211 dbSNP
rs893606795 245 dbSNP
rs1009813133 252 dbSNP
rs1336858189 291 dbSNP
rs907976598 293 dbSNP
rs940757643 294 dbSNP
rs111919821 296 dbSNP
rs1306276697 298 dbSNP
rs906431055 301 dbSNP
rs928791568 316 dbSNP
rs145402039 317 dbSNP
rs1338372096 319 dbSNP
rs1267416351 323 dbSNP
rs1449990367 331 dbSNP
rs1487649838 337 dbSNP
rs958792555 339 dbSNP
rs1251404239 342 dbSNP
rs564498392 343 dbSNP
rs1055976886 344 dbSNP
rs533538772 346 dbSNP
rs1182042492 350 dbSNP
rs1387162021 350 dbSNP
rs983345571 352 dbSNP
rs1010553278 360 dbSNP
rs546892028 361 dbSNP
rs369864214 362 dbSNP
rs999680621 364 dbSNP
rs1251281531 366 dbSNP
rs1018658157 367 dbSNP
rs183687971 370 dbSNP
rs878919531 371 dbSNP
rs901686698 378 dbSNP
rs932410698 384 dbSNP
rs1339536567 388 dbSNP
rs372843302 391 dbSNP
rs1392973526 392 dbSNP
rs866734824 393 dbSNP
rs1053501081 396 dbSNP
rs995982245 400 dbSNP
rs945258685 407 dbSNP
rs1028932678 411 dbSNP
rs535602131 414 dbSNP
rs1397927901 417 dbSNP
rs951923744 423 dbSNP
rs1161756445 425 dbSNP
rs984837754 428 dbSNP
rs1364646153 435 dbSNP
rs1015330883 439 dbSNP
rs1350449717 443 dbSNP
rs1234251186 459 dbSNP
rs1315330469 466 dbSNP
rs962189438 468 dbSNP
rs1035703350 472 dbSNP
rs1290164690 475 dbSNP
rs1219644249 479 dbSNP
rs981933473 484 dbSNP
rs928687722 486 dbSNP
rs1287506482 487 dbSNP
rs376560978 487 dbSNP
rs1405260548 488 dbSNP
rs1367408090 495 dbSNP
rs1301166301 499 dbSNP
rs1404877431 504 dbSNP
rs1203138629 505 dbSNP
rs1385756396 506 dbSNP
rs1160572922 507 dbSNP
rs1250933267 507 dbSNP
rs1451913916 511 dbSNP
rs991600682 524 dbSNP
rs1411419882 528 dbSNP
rs147693192 543 dbSNP
rs947634635 546 dbSNP
rs1183368089 552 dbSNP
rs536928740 557 dbSNP
rs1411440256 558 dbSNP
rs1027101878 565 dbSNP
rs1284331679 570 dbSNP
rs142581037 572 dbSNP
rs934978315 573 dbSNP
rs1223919242 578 dbSNP
rs1040541194 582 dbSNP
rs1435652700 588 dbSNP
rs901570591 594 dbSNP
rs1380562560 601 dbSNP
rs188302187 604 dbSNP
rs1306919658 605 dbSNP
rs1471184743 609 dbSNP
rs1427636771 612 dbSNP
rs775390680 619 dbSNP
rs1313463456 628 dbSNP
rs1415996990 629 dbSNP
rs539580178 636 dbSNP
rs191646002 637 dbSNP
rs1006547980 640 dbSNP
rs572890216 641 dbSNP
rs1247085245 646 dbSNP
rs1203898981 647 dbSNP
rs962358595 648 dbSNP
rs976938115 649 dbSNP
rs1228122922 650 dbSNP
rs1218353873 654 dbSNP
rs920931539 659 dbSNP
rs1344617782 661 dbSNP
rs932353609 665 dbSNP
rs541986758 667 dbSNP
rs981435723 668 dbSNP
rs1364509470 669 dbSNP
rs561652625 672 dbSNP
rs768772231 681 dbSNP
rs945097661 682 dbSNP
rs1212069705 683 dbSNP
rs1042238371 686 dbSNP
rs1410845283 693 dbSNP
rs906332376 699 dbSNP
rs575339835 701 dbSNP
rs549276238 704 dbSNP
rs1388996901 709 dbSNP
rs1183602447 711 dbSNP
rs1055088362 714 dbSNP
rs895053940 715 dbSNP
rs1012946914 717 dbSNP
rs1438161944 724 dbSNP
rs1249473661 732 dbSNP
rs914742745 734 dbSNP
rs947540956 735 dbSNP
rs1167397939 736 dbSNP
rs544244338 740 dbSNP
rs1315838777 744 dbSNP
rs774373006 745 dbSNP
rs529032741 746 dbSNP
rs1015770414 752 dbSNP
rs935011127 756 dbSNP
rs1415683368 761 dbSNP
rs1040043965 764 dbSNP
rs965478759 766 dbSNP
rs62134026 769 dbSNP
rs184318576 772 dbSNP
rs1356612052 775 dbSNP
rs998306773 780 dbSNP
rs761410149 786 dbSNP
rs547123479 789 dbSNP
rs767011230 793 dbSNP
rs887610629 795 dbSNP
rs989181114 803 dbSNP
rs1411244480 807 dbSNP
rs1006016930 813 dbSNP
rs1180889441 817 dbSNP
rs1470429204 818 dbSNP
rs1433254232 822 dbSNP
rs914864624 825 dbSNP
rs212703 832 dbSNP
rs1371745502 833 dbSNP
rs190228593 835 dbSNP
rs1319981579 840 dbSNP
rs1312331859 841 dbSNP
rs1276373131 843 dbSNP
rs1311576754 852 dbSNP
rs1224525888 853 dbSNP
rs542976025 854 dbSNP
rs1269852945 857 dbSNP
rs1409552829 878 dbSNP
rs1003316381 880 dbSNP
rs1305465832 882 dbSNP
rs1426050710 889 dbSNP
rs1035647845 896 dbSNP
rs1163709928 902 dbSNP
rs1400947405 913 dbSNP
rs1409621740 926 dbSNP
rs1179787973 937 dbSNP
rs372629770 943 dbSNP
rs1463263451 945 dbSNP
rs1187465834 946 dbSNP
rs958822946 948 dbSNP
rs549097313 953 dbSNP
rs1216502333 968 dbSNP
rs1318983854 985 dbSNP
rs939203851 988 dbSNP
rs1228217078 990 dbSNP
rs1324677574 995 dbSNP
rs1021631002 996 dbSNP
rs1054949780 1004 dbSNP
rs1385583275 1010 dbSNP
rs916523138 1011 dbSNP
rs930530812 1016 dbSNP
rs561610918 1019 dbSNP
rs760417204 1025 dbSNP
rs1430772949 1032 dbSNP
rs1048402061 1034 dbSNP
rs1156482551 1041 dbSNP
rs888409886 1042 dbSNP
rs1429733972 1043 dbSNP
rs1414447981 1053 dbSNP
rs1004301710 1054 dbSNP
rs13429188 1066 dbSNP
rs969305493 1067 dbSNP
rs1486876653 1068 dbSNP
rs569035118 1070 dbSNP
rs1160364654 1076 dbSNP
rs977595795 1082 dbSNP
rs1208339773 1089 dbSNP
rs924881908 1090 dbSNP
rs1324787833 1096 dbSNP
rs181858632 1104 dbSNP
rs1231440286 1105 dbSNP
rs954309356 1109 dbSNP
rs1011542240 1111 dbSNP
rs1214699738 1115 dbSNP
rs1366708824 1122 dbSNP
rs1021966552 1127 dbSNP
rs966819393 1139 dbSNP
rs1338490053 1140 dbSNP
rs1438669736 1144 dbSNP
rs1464309394 1145 dbSNP
rs965644470 1147 dbSNP
rs551494712 1153 dbSNP
rs1273208391 1163 dbSNP
rs1366806301 1166 dbSNP
rs977780659 1167 dbSNP
rs765942773 1172 dbSNP
rs1388385228 1183 dbSNP
rs960424148 1191 dbSNP
rs1290138930 1205 dbSNP
rs975779397 1206 dbSNP
rs59304678 1212 dbSNP
rs531801952 1214 dbSNP
rs990668776 1215 dbSNP
rs1483118017 1220 dbSNP
rs1252452447 1221 dbSNP
rs570679748 1227 dbSNP
rs539398934 1230 dbSNP
rs916388173 1233 dbSNP
rs1314404281 1240 dbSNP
rs549933412 1246 dbSNP
rs1394112435 1247 dbSNP
rs1453011431 1248 dbSNP
rs1218711955 1251 dbSNP
rs1401229780 1255 dbSNP
rs146738330 1257 dbSNP
rs1438036408 1263 dbSNP
rs931596701 1267 dbSNP
rs573107111 1283 dbSNP
rs908930959 1289 dbSNP
rs1183464162 1295 dbSNP
rs1445262750 1298 dbSNP
rs1049409928 1311 dbSNP
rs941875801 1315 dbSNP
rs1036178012 1319 dbSNP
rs59743366 1324 dbSNP
rs907781455 1325 dbSNP
rs1179264504 1331 dbSNP
rs1482376974 1334 dbSNP
rs138963880 1336 dbSNP
rs1002791149 1337 dbSNP
rs115617706 1339 dbSNP
rs1266909295 1343 dbSNP
rs894491840 1360 dbSNP
rs934049698 1368 dbSNP
rs1307444634 1382 dbSNP
rs1411387041 1387 dbSNP
rs1012841032 1388 dbSNP
rs1348581166 1392 dbSNP
rs1307313555 1394 dbSNP
rs1021684360 1405 dbSNP
rs1425430073 1410 dbSNP
rs148999037 1418 dbSNP
rs1391701647 1420 dbSNP
rs187028036 1426 dbSNP
rs1049892984 1427 dbSNP
rs1407353778 1428 dbSNP
rs145713694 1429 dbSNP
rs1471799926 1433 dbSNP
rs574616174 1439 dbSNP
rs1251774773 1447 dbSNP
rs1200775598 1450 dbSNP
rs999458013 1452 dbSNP
rs544152573 1455 dbSNP
rs1268854688 1461 dbSNP
rs867915292 1478 dbSNP
rs764593192 1483 dbSNP
rs1410526145 1487 dbSNP
rs190269646 1494 dbSNP
rs1355247897 1502 dbSNP
rs1260899707 1509 dbSNP
rs1023001545 1513 dbSNP
rs966054190 1524 dbSNP
rs752024409 1525 dbSNP
rs1332699919 1528 dbSNP
rs1227521529 1537 dbSNP
rs1386231408 1540 dbSNP
rs757352795 1552 dbSNP
rs921479582 1557 dbSNP
rs953034833 1562 dbSNP
rs999217032 1573 dbSNP
rs781379209 1574 dbSNP
rs181884817 1584 dbSNP
rs1358010979 1590 dbSNP
rs756422410 1605 dbSNP
rs1177528315 1606 dbSNP
rs1226194449 1611 dbSNP
rs72796891 1627 dbSNP
rs1437857287 1628 dbSNP
rs990536255 1630 dbSNP
rs1023476846 1631 dbSNP
rs1262045389 1635 dbSNP
rs1210209168 1649 dbSNP
rs1463425955 1651 dbSNP
rs941783465 1653 dbSNP
rs1254559393 1655 dbSNP
rs1036645470 1658 dbSNP
rs1272975100 1659 dbSNP
rs919102371 1659 dbSNP
rs1181897253 1680 dbSNP
rs115969447 1690 dbSNP
rs1056990963 1691 dbSNP
rs1322871457 1699 dbSNP
rs1473979318 1702 dbSNP
rs907807005 1707 dbSNP
rs1337837737 1712 dbSNP
rs1416472354 1721 dbSNP
rs1423742842 1723 dbSNP
rs529421214 1725 dbSNP
rs1477448663 1730 dbSNP
rs972721064 1744 dbSNP
rs948746901 1754 dbSNP
rs1043050534 1764 dbSNP
rs749108540 1767 dbSNP
rs904638921 1779 dbSNP
rs1246991610 1780 dbSNP
rs1210612566 1785 dbSNP
rs998946789 1788 dbSNP
rs1413369588 1789 dbSNP
rs1430438301 1791 dbSNP
rs1032134700 1801 dbSNP
rs1339927819 1804 dbSNP
rs13406947 1805 dbSNP
rs998324012 1806 dbSNP
rs1226224041 1816 dbSNP
rs562603294 1817 dbSNP
rs1364760633 1818 dbSNP
rs147504211 1823 dbSNP
rs1334558720 1824 dbSNP
rs1450684987 1829 dbSNP
rs1341983965 1836 dbSNP
rs1357782264 1839 dbSNP
rs1334153929 1846 dbSNP
rs1411029986 1853 dbSNP
rs1049837399 1865 dbSNP
rs1169974589 1870 dbSNP
rs868243168 1874 dbSNP
rs1389205611 1877 dbSNP
rs985820655 1881 dbSNP
rs975123755 1882 dbSNP
rs1473687259 1888 dbSNP
rs1445573858 1893 dbSNP
rs1235535539 1894 dbSNP
rs1483359199 1897 dbSNP
rs1015929654 1900 dbSNP
rs946901650 1903 dbSNP
rs963336473 1904 dbSNP
rs551750283 1912 dbSNP
rs1229951520 1913 dbSNP
rs571591634 1919 dbSNP
rs938537469 1925 dbSNP
rs992602657 1927 dbSNP
rs1340656923 1929 dbSNP
rs768499027 1936 dbSNP
rs177083 1937 dbSNP
rs1306679288 1944 dbSNP
rs566392713 1950 dbSNP
rs1185902135 1951 dbSNP
rs1164794223 1956 dbSNP
rs1406742003 1959 dbSNP
rs1237085995 1964 dbSNP
rs896115767 1965 dbSNP
rs904525572 1971 dbSNP
rs566793701 1972 dbSNP
rs142457370 1977 dbSNP
rs1023840600 1981 dbSNP
rs951815637 1984 dbSNP
rs533762674 1990 dbSNP
rs1320179542 1997 dbSNP
rs760091037 2007 dbSNP
rs998376482 2008 dbSNP
rs1483382207 2030 dbSNP
rs535608479 2033 dbSNP
rs975931347 2040 dbSNP
rs890083334 2042 dbSNP
rs934025325 2045 dbSNP
rs79320426 2047 dbSNP
rs765785609 2048 dbSNP
rs568923883 2050 dbSNP
rs1322434880 2056 dbSNP
rs1412513297 2066 dbSNP
rs963091690 2070 dbSNP
rs537589157 2071 dbSNP
rs430759 2087 dbSNP
rs1425740392 2091 dbSNP
rs1193018054 2093 dbSNP
rs567535400 2095 dbSNP
rs992655055 2100 dbSNP
rs1209576514 2106 dbSNP
rs1466374695 2111 dbSNP
rs1266629475 2115 dbSNP
rs935573233 2120 dbSNP
rs538061688 2121 dbSNP
rs1436919245 2128 dbSNP
rs1294955654 2135 dbSNP
rs764396658 2137 dbSNP
rs978708789 2144 dbSNP
rs1364871566 2150 dbSNP
rs1324872589 2158 dbSNP
rs556351451 2159 dbSNP
rs1054532697 2164 dbSNP
rs759468094 2171 dbSNP
rs1318333088 2173 dbSNP
rs1456466658 2179 dbSNP
rs751895394 2180 dbSNP
rs1178130846 2188 dbSNP
rs1431566113 2195 dbSNP
rs1424564676 2197 dbSNP
rs554012587 2205 dbSNP
rs1189220280 2207 dbSNP
rs1451593831 2209 dbSNP
rs887535973 2213 dbSNP
rs934695099 2218 dbSNP
rs574003819 2225 dbSNP
rs767378191 2226 dbSNP
rs142515088 2231 dbSNP
rs1208624481 2234 dbSNP
rs1347794807 2236 dbSNP
rs767901377 2238 dbSNP
rs961890322 2239 dbSNP
rs1366948367 2243 dbSNP
rs750570591 2248 dbSNP
rs922709272 2252 dbSNP
rs145982750 2253 dbSNP
rs1379602363 2256 dbSNP
rs1049803632 2266 dbSNP
rs1190683123 2282 dbSNP
rs3210627 2284 dbSNP
rs867159963 2285 dbSNP
rs889967451 2288 dbSNP
rs985885271 2289 dbSNP
rs911198768 2295 dbSNP
rs968547877 2306 dbSNP
rs1448899063 2308 dbSNP
rs1199725623 2309 dbSNP
rs1180416685 2313 dbSNP
rs562790349 2317 dbSNP
rs1006107328 2321 dbSNP
rs1205317321 2322 dbSNP
rs1275916200 2322 dbSNP
rs531684746 2325 dbSNP
rs1343646082 2332 dbSNP
rs1272105544 2365 dbSNP
rs1226252170 2366 dbSNP
rs1340630630 2376 dbSNP
rs1038637104 2377 dbSNP
rs924020145 2392 dbSNP
rs897382362 2402 dbSNP
rs1308527125 2405 dbSNP
rs1171781032 2406 dbSNP
rs545204792 2407 dbSNP
rs780327317 2426 dbSNP
rs76678270 2436 dbSNP
rs918197114 2437 dbSNP
rs527655498 2442 dbSNP
rs1387489039 2446 dbSNP
rs1370379236 2448 dbSNP
rs116414477 2452 dbSNP
rs566732085 2457 dbSNP
rs1253223631 2458 dbSNP
rs1333318769 2460 dbSNP
rs1045137656 2479 dbSNP
rs529204887 2485 dbSNP
rs1006297104 2489 dbSNP
rs1394358302 2497 dbSNP
rs1022635629 2514 dbSNP
rs1356638520 2521 dbSNP
rs1266820165 2526 dbSNP
rs1330185352 2528 dbSNP
rs1211005884 2529 dbSNP
rs778893339 2542 dbSNP
rs897564191 2548 dbSNP
rs1210498419 2556 dbSNP
rs549195079 2557 dbSNP
rs997326348 2570 dbSNP
rs1030095282 2571 dbSNP
rs1328311863 2574 dbSNP
rs1387378969 2578 dbSNP
rs1393211308 2582 dbSNP
rs969877715 2597 dbSNP
rs569108784 2613 dbSNP
rs953311614 2615 dbSNP
rs560638999 2616 dbSNP
rs1459464042 2617 dbSNP
rs386644540 2617 dbSNP
rs747954749 2626 dbSNP
rs925913564 2627 dbSNP
rs184912580 2629 dbSNP
rs1269103884 2636 dbSNP
rs968116511 2645 dbSNP
rs988860871 2647 dbSNP
rs979834171 2650 dbSNP
rs1268531792 2652 dbSNP
rs922602445 2653 dbSNP
rs933947139 2658 dbSNP
rs772106066 2659 dbSNP
rs189865848 2660 dbSNP
rs80012377 2670 dbSNP
rs533517147 2700 dbSNP
rs1299544715 2705 dbSNP
rs941561838 2707 dbSNP
rs536811286 2708 dbSNP
rs1038931213 2719 dbSNP
rs77890389 2725 dbSNP
rs918055393 2727 dbSNP
rs1384937028 2746 dbSNP
rs1173658206 2759 dbSNP
rs1478108774 2761 dbSNP
rs1351690512 2765 dbSNP
rs948306664 2772 dbSNP
rs1191144793 2777 dbSNP
rs138582665 2783 dbSNP
rs1316554212 2787 dbSNP
rs542956427 2792 dbSNP
rs1245713034 2797 dbSNP
rs909445435 2812 dbSNP
rs1267476230 2813 dbSNP
rs770311154 2817 dbSNP
rs1056601628 2821 dbSNP
rs1036417890 2822 dbSNP
rs1254362157 2833 dbSNP
rs1233611130 2836 dbSNP
rs1277579164 2837 dbSNP
rs181180632 2841 dbSNP
rs1252404209 2844 dbSNP
rs1433423594 2847 dbSNP
rs1326205329 2850 dbSNP
rs371022606 2853 dbSNP
rs933044550 2854 dbSNP
rs1400629678 2861 dbSNP
rs895492987 2869 dbSNP
rs1179729435 2873 dbSNP
rs1171235455 2879 dbSNP
rs1433526196 2883 dbSNP
rs1390453431 2888 dbSNP
rs545603677 2897 dbSNP
rs776290286 2906 dbSNP
rs1022688143 2907 dbSNP
rs1424180015 2911 dbSNP
rs1166398741 2913 dbSNP
rs1187946441 2926 dbSNP
rs1051556848 2931 dbSNP
rs542973142 2939 dbSNP
rs1007804219 2943 dbSNP
rs550387665 2947 dbSNP
rs1277123040 2948 dbSNP
rs1168733485 2952 dbSNP
rs1371701237 2956 dbSNP
rs1226468280 2958 dbSNP
rs747531452 2961 dbSNP
rs1338917802 2969 dbSNP
rs561266677 2970 dbSNP
rs904426235 2975 dbSNP
rs1312779565 2978 dbSNP
rs1413694923 2991 dbSNP
rs35454566 2991 dbSNP
rs565196758 2992 dbSNP
rs1030983647 3010 dbSNP
rs141781870 3012 dbSNP
rs956020653 3015 dbSNP
rs774761861 3020 dbSNP
rs1397001111 3036 dbSNP
rs541389626 3041 dbSNP
rs992204578 3047 dbSNP
rs1473644654 3049 dbSNP
rs1025060382 3050 dbSNP
rs1187132798 3051 dbSNP
rs969616805 3058 dbSNP
rs186470412 3068 dbSNP
rs1202466448 3069 dbSNP
rs1437494783 3074 dbSNP
rs1290820621 3076 dbSNP
rs1320179666 3078 dbSNP
rs981333045 3079 dbSNP
rs1245307427 3080 dbSNP
rs1275512692 3087 dbSNP
rs909488933 3087 dbSNP
rs1344220663 3096 dbSNP
rs955379333 3102 dbSNP
rs1202852908 3103 dbSNP
rs1293282183 3103 dbSNP
rs1229549450 3106 dbSNP
rs1352801787 3119 dbSNP
rs529192408 3121 dbSNP
rs1439360832 3123 dbSNP
rs549327885 3125 dbSNP
rs918891969 3128 dbSNP
rs1415401830 3135 dbSNP
rs191788581 3147 dbSNP
rs1253618287 3151 dbSNP
rs531371051 3152 dbSNP
rs1051503162 3153 dbSNP
rs888859534 3156 dbSNP
rs1175595994 3158 dbSNP
rs1443696300 3162 dbSNP
rs551562189 3166 dbSNP
rs1188636178 3178 dbSNP
rs1469670579 3182 dbSNP
rs1391410649 3189 dbSNP
rs1427277448 3193 dbSNP
rs1167211395 3200 dbSNP
rs571211013 3201 dbSNP
rs1224039319 3206 dbSNP
rs941434734 3212 dbSNP
rs943246998 3214 dbSNP
rs1043264094 3220 dbSNP
rs1209693371 3221 dbSNP
rs1331898522 3223 dbSNP
rs1305467918 3224 dbSNP
rs904458517 3227 dbSNP
rs1371978911 3229 dbSNP
rs999144066 3231 dbSNP
rs1438189317 3241 dbSNP
rs974308715 3242 dbSNP
rs762067080 3247 dbSNP
rs1390806861 3248 dbSNP
rs533938085 3248 dbSNP
rs34518164 3255 dbSNP
rs1056655117 3256 dbSNP
rs1466843556 3257 dbSNP
rs1418644347 3267 dbSNP
rs150765804 3286 dbSNP
rs1377229669 3287 dbSNP
rs183308493 3298 dbSNP
rs949742936 3301 dbSNP
rs1192930684 3302 dbSNP
rs1025091399 3306 dbSNP
rs969858421 3306 dbSNP
rs1452271104 3315 dbSNP
rs868722302 3320 dbSNP
rs1367373475 3326 dbSNP
rs905644259 3332 dbSNP
rs1189671568 3338 dbSNP
rs1226303450 3349 dbSNP
rs1466522595 3373 dbSNP
rs536525288 3374 dbSNP
rs1215711561 3377 dbSNP
rs1272166341 3381 dbSNP
rs1278739522 3387 dbSNP
rs1235801685 3399 dbSNP
rs963672761 3405 dbSNP
rs972252359 3407 dbSNP
rs1435614533 3426 dbSNP
rs1363809912 3433 dbSNP
rs1000348330 3442 dbSNP
rs762386806 3443 dbSNP
rs891637769 3444 dbSNP
rs1010051761 3445 dbSNP
rs139207991 3450 dbSNP
rs955262377 3451 dbSNP
rs1208903851 3453 dbSNP
rs750828002 3456 dbSNP
rs1394772228 3465 dbSNP
rs1018690470 3468 dbSNP
rs6757121 3480 dbSNP
rs1451490619 3490 dbSNP
rs1260104150 3494 dbSNP
rs1186245485 3499 dbSNP
rs538813525 3501 dbSNP
rs918650338 3504 dbSNP
rs1185467986 3505 dbSNP
rs1212461061 3511 dbSNP
rs1345100093 3515 dbSNP
rs943088748 3517 dbSNP
rs1042908518 3523 dbSNP
rs779861179 3523 dbSNP
rs1293199124 3530 dbSNP
rs1381398611 3533 dbSNP
rs1379873368 3543 dbSNP
rs925737306 3544 dbSNP
rs1413084443 3547 dbSNP
rs868860007 3550 dbSNP
rs766517083 3559 dbSNP
rs753944402 3564 dbSNP
rs895721455 3566 dbSNP
rs1371513564 3572 dbSNP
rs1170238208 3573 dbSNP
rs1013614353 3574 dbSNP
rs918197991 3584 dbSNP
rs565180622 3585 dbSNP
rs1044079223 3587 dbSNP
rs1256207062 3588 dbSNP
rs1205187116 3600 dbSNP
rs568862786 3603 dbSNP
rs373000852 3604 dbSNP
rs149947086 3605 dbSNP
rs1054632941 3607 dbSNP
rs1391147960 3608 dbSNP
rs1016437471 3610 dbSNP
rs963922379 3612 dbSNP
rs891526051 3614 dbSNP
rs1269736767 3617 dbSNP
rs1354690363 3625 dbSNP
rs1308746890 3626 dbSNP
rs561246442 3643 dbSNP
rs779265141 3653 dbSNP
rs1220813038 3655 dbSNP
rs891089542 3660 dbSNP
rs574858978 3661 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HEK293S
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in GSM1084069. RNA binding protein: AGO2. Condition:CLIP_emetine_SigmaAb HITS-CLIP data was present in GSM1084078. RNA binding protein: AGO2. Condition:CLIP_nohippuristanol_rep2_AbnovaAb ...

- Karginov FV; Hannon GJ, 2013, Genes & development.

Article - Karginov FV; Hannon GJ
- Genes & development, 2013
When adapting to environmental stress, cells attenuate and reprogram their translational output. In part, these altered translation profiles are established through changes in the interactions between RNA-binding proteins and mRNAs. The Argonaute 2 (Ago2)/microRNA (miRNA) machinery has been shown to participate in stress-induced translational up-regulation of a particular mRNA, CAT-1; however, a detailed, transcriptome-wide understanding of the involvement of Ago2 in the process has been lacking. Here, we profiled the overall changes in Ago2-mRNA interactions upon arsenite stress by cross-linking immunoprecipitation (CLIP) followed by high-throughput sequencing (CLIP-seq). Ago2 displayed a significant remodeling of its transcript occupancy, with the majority of 3' untranslated region (UTR) and coding sequence (CDS) sites exhibiting stronger interaction. Interestingly, target sites that were destined for release from Ago2 upon stress were depleted in miRNA complementarity signatures, suggesting an alternative mode of interaction. To compare the changes in Ago2-binding patterns across transcripts with changes in their translational states, we measured mRNA profiles on ribosome/polysome gradients by RNA sequencing (RNA-seq). Increased Ago2 occupancy correlated with stronger repression of translation for those mRNAs, as evidenced by a shift toward lighter gradient fractions upon stress, while release of Ago2 was associated with the limited number of transcripts that remained translated. Taken together, these data point to a role for Ago2 and the mammalian miRNAs in mediating the translational component of the stress response.
LinkOut: [PMID: 23824327]
CLIP-seq Support 1 for dataset GSM4903833
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_a
Location of target site NM_017964 | 3UTR | CACUGCAACCUCUGCCUCCUGAGUUCAAAUGAUUCUCCUGCCUCAGCCUCCCGAGUAGCUGGGAUUACAGGCACCUGCCACCACGCCCAGCUAAUUUUUGUAUUUUUAGUAAAGACGGGGGAUUUCACCAUGUUGGCCAGGCUGGUCUUGAACUCCUGACCUCAUGAUCCACCCACCUUAGCCUCCCAAAGUGCUGGGAUUAG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM4903835
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_c
Location of target site NM_017964 | 3UTR | CACUGCAACCUCUGCCUCCUGAGUUCAAAUGAUUCUCCUGCCUCAGCCUCCCGAGUAGCUGGGAUUACAGGCAC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 3 for dataset GSM4903836
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / 124_TD_21_a
Location of target site NM_017964 | 3UTR | UCAAAUGAUUCUCCUGCCUCAGCCUCCCGAGUAGCUGGGAUUACAGGCAC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 4 for dataset GSM4903837
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / 124_TD_21_b
Location of target site NM_017964 | 3UTR | CAAAUGAUUCUCCUGCCUCAGCCUCCCGAGUAGCUGGGAUUACAGGCACCUGCCACCACGCCCAGCUAAUUUUUGUAUUUUUAGUAAAGACGGGGGAUUUCACCAUGUUGGCCAGGCUGGUCUUGAACUCCUGACCUCAUGAUCCACCCACCUUAGCCUCCCAAAGUGCUGGGAUUAG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 5 for dataset GSM1084069
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_emetine_SigmaAb
Location of target site ENST00000282587.5 | 3UTR | AAAUGAUUCUCCUGCCUCAGCCUCCC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
CLIP-seq Support 6 for dataset GSM1084078
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_nohippuristanol_rep2_AbnovaAb
Location of target site ENST00000282587.5 | 3UTR | AAAUGAUUCUCCUGCCUCAGCCUCCC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
133 hsa-miR-4680-5p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT378771 MACC1 MACC1, MET transcriptional regulator 2 2
MIRT393867 ZDHHC21 zinc finger DHHC-type containing 21 2 4
MIRT446684 C2CD2 C2 calcium dependent domain containing 2 2 2
MIRT447600 MRPL3 mitochondrial ribosomal protein L3 2 2
MIRT450708 RNF152 ring finger protein 152 2 2
MIRT450784 PAPOLG poly(A) polymerase gamma 2 2
MIRT454623 COL23A1 collagen type XXIII alpha 1 chain 2 8
MIRT461620 PTCD3 pentatricopeptide repeat domain 3 2 2
MIRT462695 SNRPD3 small nuclear ribonucleoprotein D3 polypeptide 2 2
MIRT475530 HOXA3 homeobox A3 2 8
MIRT475739 HERPUD1 homocysteine inducible ER protein with ubiquitin like domain 1 2 4
MIRT489676 CYP1A1 cytochrome P450 family 1 subfamily A member 1 2 2
MIRT490610 SLC47A1 solute carrier family 47 member 1 2 2
MIRT493628 HIC2 HIC ZBTB transcriptional repressor 2 2 2
MIRT496152 RPS15A ribosomal protein S15a 2 2
MIRT499232 VAV3 vav guanine nucleotide exchange factor 3 2 4
MIRT501496 PRICKLE2 prickle planar cell polarity protein 2 2 2
MIRT507163 GAS2L3 growth arrest specific 2 like 3 2 2
MIRT512389 MTRNR2L1 MT-RNR2-like 1 2 4
MIRT514626 MTRNR2L7 MT-RNR2-like 7 2 2
MIRT517474 PEX26 peroxisomal biogenesis factor 26 2 2
MIRT525332 CNGB1 cyclic nucleotide gated channel beta 1 2 2
MIRT526685 BAK1 BCL2 antagonist/killer 1 2 2
MIRT527317 CCR2 C-C motif chemokine receptor 2 2 2
MIRT527608 EYS eyes shut homolog (Drosophila) 2 2
MIRT528794 RAB32 RAB32, member RAS oncogene family 2 2
MIRT531048 TIPARP TCDD inducible poly(ADP-ribose) polymerase 2 2
MIRT532254 TBPL2 TATA-box binding protein like 2 2 2
MIRT533801 TMED7 transmembrane p24 trafficking protein 7 2 4
MIRT535887 MLEC malectin 2 2
MIRT540704 PDPK1 3-phosphoinositide dependent protein kinase 1 2 4
MIRT544645 PHF8 PHD finger protein 8 2 4
MIRT545760 HS3ST1 heparan sulfate-glucosamine 3-sulfotransferase 1 2 2
MIRT555310 PPP2R5C protein phosphatase 2 regulatory subunit B'gamma 2 2
MIRT555877 PAFAH1B2 platelet activating factor acetylhydrolase 1b catalytic subunit 2 2 4
MIRT559507 ARID5B AT-rich interaction domain 5B 2 2
MIRT560448 SLC30A7 solute carrier family 30 member 7 2 2
MIRT561262 ZIK1 zinc finger protein interacting with K protein 1 2 2
MIRT561795 PAWR pro-apoptotic WT1 regulator 2 2
MIRT567007 KLHL15 kelch like family member 15 2 2
MIRT569298 SURF6 surfeit 6 2 2
MIRT570606 MTRNR2L11 MT-RNR2-like 11 2 2
MIRT572888 ADCY2 adenylate cyclase 2 2 2
MIRT573119 ADAMTS18 ADAM metallopeptidase with thrombospondin type 1 motif 18 2 2
MIRT608332 ZNF670 zinc finger protein 670 2 6
MIRT614942 KCNK5 potassium two pore domain channel subfamily K member 5 2 2
MIRT615324 ERN1 endoplasmic reticulum to nucleus signaling 1 2 2
MIRT618441 ZNF800 zinc finger protein 800 2 2
MIRT620110 HARBI1 harbinger transposase derived 1 2 2
MIRT626008 ZNF517 zinc finger protein 517 2 2
MIRT626626 SLC30A6 solute carrier family 30 member 6 2 2
MIRT627842 POU3F1 POU class 3 homeobox 1 2 2
MIRT628386 CACNB2 calcium voltage-gated channel auxiliary subunit beta 2 2 2
MIRT629305 PTPLAD2 3-hydroxyacyl-CoA dehydratase 4 1 1
MIRT629864 GATAD1 GATA zinc finger domain containing 1 2 2
MIRT630444 IDE insulin degrading enzyme 2 2
MIRT631854 PIGG phosphatidylinositol glycan anchor biosynthesis class G 2 2
MIRT633173 AGO3 argonaute 3, RISC catalytic component 2 2
MIRT633477 ZNF724P zinc finger protein 724 2 2
MIRT634395 PLSCR1 phospholipid scramblase 1 2 2
MIRT635538 TRIM72 tripartite motif containing 72 2 2
MIRT635821 OPA3 OPA3, outer mitochondrial membrane lipid metabolism regulator 2 2
MIRT636169 TIMM8A translocase of inner mitochondrial membrane 8A 2 2
MIRT636797 CYB5D1 cytochrome b5 domain containing 1 2 2
MIRT637952 IVD isovaleryl-CoA dehydrogenase 2 2
MIRT645136 HES2 hes family bHLH transcription factor 2 2 2
MIRT645667 ADK adenosine kinase 2 2
MIRT646148 FLVCR1 feline leukemia virus subgroup C cellular receptor 1 2 2
MIRT647004 NCR3LG1 natural killer cell cytotoxicity receptor 3 ligand 1 2 2
MIRT648187 C2orf68 chromosome 2 open reading frame 68 2 2
MIRT650090 TERF2 telomeric repeat binding factor 2 2 2
MIRT650329 RTN2 reticulon 2 2 2
MIRT654224 RNF165 ring finger protein 165 2 2
MIRT654545 RAB1A RAB1A, member RAS oncogene family 2 2
MIRT656457 MAPK14 mitogen-activated protein kinase 14 2 2
MIRT656828 KLF8 Kruppel like factor 8 2 2
MIRT657112 ITPRIPL2 inositol 1,4,5-trisphosphate receptor interacting protein like 2 2 2
MIRT657930 GATSL2 cytosolic arginine sensor for mTORC1 subunit 2 2 2
MIRT659375 CREG2 cellular repressor of E1A stimulated genes 2 2 2
MIRT659833 CARHSP1 calcium regulated heat stable protein 1 2 2
MIRT662108 LACTB lactamase beta 2 4
MIRT662789 TBC1D25 TBC1 domain family member 25 2 2
MIRT669501 ARL3 ADP ribosylation factor like GTPase 3 2 2
MIRT669759 ZNF101 zinc finger protein 101 2 4
MIRT669800 GAN gigaxonin 2 2
MIRT670050 RPP14 ribonuclease P/MRP subunit p14 2 2
MIRT670299 RBBP4 RB binding protein 4, chromatin remodeling factor 2 2
MIRT670388 EMP2 epithelial membrane protein 2 2 2
MIRT672862 C22orf29 retrotransposon Gag like 10 2 2
MIRT672890 FXN frataxin 2 2
MIRT673210 C10orf76 chromosome 10 open reading frame 76 2 2
MIRT674001 KCNN3 potassium calcium-activated channel subfamily N member 3 2 2
MIRT674163 BLOC1S3 biogenesis of lysosomal organelles complex 1 subunit 3 2 2
MIRT674502 TIRAP TIR domain containing adaptor protein 2 2
MIRT675470 NUBPL nucleotide binding protein like 2 2
MIRT675671 TMOD2 tropomodulin 2 2 2
MIRT676006 CRKL CRK like proto-oncogene, adaptor protein 2 2
MIRT676074 TIMM50 translocase of inner mitochondrial membrane 50 2 2
MIRT676386 SEC24D SEC24 homolog D, COPII coat complex component 2 2
MIRT676764 SNX2 sorting nexin 2 2 2
MIRT676896 GABPB1 GA binding protein transcription factor beta subunit 1 2 2
MIRT676978 ZNF708 zinc finger protein 708 2 2
MIRT677236 C15orf40 chromosome 15 open reading frame 40 2 2
MIRT677369 HSPA4L heat shock protein family A (Hsp70) member 4 like 2 2
MIRT677464 PDLIM3 PDZ and LIM domain 3 2 2
MIRT678081 EIF2A eukaryotic translation initiation factor 2A 2 2
MIRT678093 ATCAY ATCAY, caytaxin 2 2
MIRT678324 FBLIM1 filamin binding LIM protein 1 2 2
MIRT678417 ANKRD36 ankyrin repeat domain 36 2 2
MIRT678521 ZNF347 zinc finger protein 347 2 2
MIRT678700 TRIP11 thyroid hormone receptor interactor 11 2 2
MIRT678829 PDE6A phosphodiesterase 6A 2 2
MIRT679991 RUNDC1 RUN domain containing 1 2 2
MIRT680751 PSD4 pleckstrin and Sec7 domain containing 4 2 2
MIRT681249 ZNF383 zinc finger protein 383 2 2
MIRT681422 GTF3C6 general transcription factor IIIC subunit 6 2 2
MIRT681948 SLC19A3 solute carrier family 19 member 3 2 2
MIRT689278 C5AR2 complement component 5a receptor 2 2 2
MIRT690389 PARP15 poly(ADP-ribose) polymerase family member 15 2 2
MIRT691845 OSCAR osteoclast associated, immunoglobulin-like receptor 2 2
MIRT693863 IYD iodotyrosine deiodinase 2 2
MIRT696002 DNAJC10 DnaJ heat shock protein family (Hsp40) member C10 2 2
MIRT701930 MLLT1 MLLT1, super elongation complex subunit 2 2
MIRT702341 KLHL7 kelch like family member 7 2 2
MIRT703557 FKBP14 FK506 binding protein 14 2 2
MIRT705033 CACUL1 CDK2 associated cullin domain 1 2 2
MIRT706341 STAC2 SH3 and cysteine rich domain 2 2 2
MIRT709671 RGP1 RGP1 homolog, RAB6A GEF complex partner 1 2 2
MIRT711212 EFHB EF-hand domain family member B 2 2
MIRT718342 PURA purine rich element binding protein A 2 2
MIRT722755 SIRPB2 signal regulatory protein beta 2 2 2
MIRT723535 NFATC2IP nuclear factor of activated T-cells 2 interacting protein 2 2
MIRT724498 BFAR bifunctional apoptosis regulator 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-4680-5p Gemcitabine 60750 NSC613327 approved resistant cell line (PANC-1) (1500 ng/ml)

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