pre-miRNA Information
pre-miRNA hsa-mir-4793   
Genomic Coordinates chr3: 48644194 - 48644280
Description Homo sapiens miR-4793 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-4793-3p
Sequence 58| UCUGCACUGUGAGUUGGCUGGCU |80
Evidence Experimental
Experiments Illumina
DRVs in miRNA
Mutant ID Mutant Position Mutant Source
COSM5899925 14 COSMIC
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs779602935 6 dbSNP
rs757908486 7 dbSNP
rs1422853760 15 dbSNP
rs377721296 23 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol CDC14B   
Synonyms CDC14B3, Cdc14B1, Cdc14B2, hCDC14B
Description cell division cycle 14B
Transcript NM_001077181   
Other Transcripts NM_003671 , NM_033331   
Expression
Putative miRNA Targets on CDC14B
3'UTR of CDC14B
(miRNA target sites are highlighted)
>CDC14B|NM_001077181|3'UTR
   1 GTAAAAACCTGTGACCAGAGCTGAAGGAAGACTCTAGGACTGAAAACTGCAACAGAAATTAGCACAATTTGAAAACAAAA
  81 CAAAATTGCAAAAGCCTTAGTTGCTTTTTCCACCTAAGAAGTTGATCAATGGAGAAAATGTCCACTGGAGTTTGAATAAT
 161 GAACTTTGAGTTTGGGTGCAAGCAAATGACTCAGAGAAGGGTCCAGCTCTCAAGCTGAATGACAAACATGCTGTTGTAAA
 241 TTTAGTCTCAGGTGTAAATACCCAAGCCCTCTGGTACCCAGGGAGCTGGCTGGTCTGTGGTGCATGTGTGTCCCTGTGAT
 321 GGCAATCATTGTAGTTGCTGGCCTTCAGAAGAATTGAGGATCTGATGGAGGTTTTTTATGTATTTATTTTCTGTTCACCT
 401 TGTGACCCTGTGTCAAAATTTATAAAGATACAAAAGGCATTACTGAAATGGTACTTTCTGTAATTTGATACTATTTGGCT
 481 TAATCATCTTCACTTGACTATTTGTAATACTGTTGTAATGTTAACTCTGTTAAGTACCCAAGCTGCTTGTCTTCCACCAA
 561 AGAGTGCTTTATTAACAAGAATCTGTGAAAATCACATTTAAACACTGTTGCATGTTGTAAGACCAGGTGGTACCTTAGTA
 641 ACCTAAAACTTGCAAGAGAATATTAATGGTAGCTTTAGAAGACTCAGGAGGAGAAACTGACTTCAGAGTTGGAAGATGTT
 721 GCAAGTCGTTCCTTTTTCTGTCCTTCAGGGACTGAAGAACTGGGAGGCTGCCCATTGTTTGGTTGCCAGTCATACAAATT
 801 AAAATCATATTTCCTTCCATGAATGGAAGAAACACACTATTGGTTTTTCCCCTTGGAAACAGCAATCCCAAATAATGTCG
 881 GCTTACAAAAAAAAAAAGTTACCACTTTTTTAGAGTCCTTCCCTGTAACATTGGATTTTTTTTTTCCCTTATGAGATCCA
 961 CCTAAGGCCATTGACGTGGCCTGCGATCTCAGTGACAATGATCTGCTTCTGGATCTCACTGTTGCCTTTGGTTAGGGAAC
1041 ACAACTAGTAACTCTGCAGAGTGCCTTCTCCCGCAGCCCTACTGGAACACAGCAGAGTCTGTGCCATGAAGCAGTTACAG
1121 AAACAGAATTGATGTGCTGCTAAAAAAAAAAAAAAAAATGGGGCCCGAAATAAAAGAATATATAGTACTCACCTCAGTTC
1201 CTTCCATAAGAAGTGGGTGGTTTAATGATTGTTAAGCCATTTTTGCCTGTGCCGGGAGCATGGAGGGCTGAGATGTCGAC
1281 AGGCAGTGGGAAACAAATGCCCTCCTAAGCCACAAGGCGTGCGCCAGATTAGTAGGCAACTCCATTTTAAGAAGCTGCCT
1361 TTTTCACAAAACTGGAAGAAATAAAAGCGGTTGGAATAAACAAGTTAAAAGTCTTTAATGCAAAAAGTAATTGAAAGGCA
1441 GTGCCTCCATTTTGGTGTACTTTCTTGGAAGAAAGTATAAAATTGACCGGCATCATGAGAGACGGAAGATGCCGTGTTCT
1521 CAGCCAAACAAGCAACTCTTTCCCCGCCAGGCACTGTCGGGTGGGGTCAGGCCAGCTTTTAAACACTGGGGACTGGATCA
1601 CAGAAAAACAGTGGTTTTCTGTCCCTGGAAATGAATAGGCACAAAGACCCACTTGGCTGTGGGCAGACTACTCTTCAATA
1681 AGATTTGGGTGGGAGGAGGAACATTCCTTTTGCTATTTTGAGCTGAGACAATATAAATATTCAAACTGTGCCATGCATAA
1761 AGCATTGAATTCTCAGGGCACCTCTTCTTCCCCTTACCCCTTTTAAGGCCATCCCCTCCATTAATAATAATCCAGGTAGT
1841 TGTGAAAATCGTGCTTCTATCTGATCCCTTCTTAGTTTGGCTTTTCATCCCATCAGAACAAGTAAACGTAGGCGCCACAG
1921 CTCTTGTGAGTACTGTCTCCCTCACGGTGAATGAGCCTCCTGGTGTTTCGTCCAAGAAAAGAAAGGGTGTCACTGGAACC
2001 ACAGCCCTTTTTCATTTTATAAACTGCCTCTTCATGTTGCCTGCTCAAGTTTCCACCTAGAATTGCTATCACTGTGGCTC
2081 TTTCTAAAAATCTTTCTATTTAACTGGTTCACTGAAATTAGTCATAGAAAACTTGTGATTTGGTGAAGAGGCATTCCTTG
2161 TAATAACCAAATGACTTGGGATGGTGTGCATAGCAAGGGCAGTGTTACACTTATGAGGACTGTCTCTAGCATCCAGGAAG
2241 TCTCTGGGTCTGAGGGATGGAAAGTTCTTCCTGCTATGAATGAGAGTGGACTCTTCCCCTCACCCCCAACTGAAACCACA
2321 AACAACCAGAATCTTCTGGAATTCTGACTTAGAGTCGTTGTTATAGAAGACCTTGTTGCTATGGAACATGAAACTGTGTG
2401 TCAGATGGAGAGATCCCCTTAACCTAAGAGCCTTAAATAGCCCTGAAAGTACACTGGGACGGTTTGCGATGGAATTAAAA
2481 TTGGAAGTGAATATTTTTAGGTGCTCTTGAAGCTTTCTGGGGACTCAAAATTATCAAAAGTCAGGGACAGTCCGGAGGAA
2561 GAGCGTCTGCAAAACTGGGTTCCTAGAAGTATAGACGGACTTAGCTTTTTGTAGAATTTGGTGAGGAGCAGCGCCTCGTG
2641 AGAGCAGAATGGCCTGGCGTGGCCAGTGCTTCCCGGCAGCACGCAGCTCTGCGGCCTCCAGAATTCCCCTGTTCTGAGCT
2721 TGATGCCCCTAGCCTGTCCCCTACCTACTTCCTCCCCTCCTCTCTAGCCCTCTCACAGGGGTGATTGCTACCTCTCTGTT
2801 TTCTTGGGCCTAGGCAAGTTTTAGAGGAGTTCCCAAGCATTGTTATGAGGCCAGTGTGCTCGCTGGGCTGGGCGGGATGG
2881 CCTGGGCTTGTGTGTGGCCTGAGGGCTCTCCTGGGGCCTTCTCTTTTCCCAGTCACCTTTGGAGCCACAGAAGCAGTGCA
2961 CTCATTGGATGTCTGTTCTTAACACAGCTTCTCTTTCTACATTAAAAAAAATCATTATTGCATTTTGGAAAGCAGTGCTC
3041 ATCAAAAGCAACTTTTAAAACCTATTTTATTGTTCCTTTAAATGTTCTCTCCCGCTGAAACTGCCCTGGAGAGGCTATCT
3121 GCTGCTCTTCCATTTACCCACATCAGGTTATTCTCCATGTCACTCAGTGGAGATGACTCCAGATGTGTTTAAAGACTGGA
3201 CAATTCACCTATACTGTGTAGGAAATTACCTCCTTAATTACCTGGTAGAATTGTCAGCAGACATGTTCATCCGATGATAG
3281 TACTGCAGTTTTCTATTAATAATTTGCAGACTTTTATCTAACCTGCACTCATGTACAGATTATTAAAAGTTTTAAAATGT
3361 AACTGATCAGTATTGATCAATCATTGTCTTGATTTTTTTTTACAGCGTATATTTCTAATCATATTTTTTAAAGCCAAGAG
3441 AACTGGTTGAATGAATGTTTATTTTCCTGAAGGTATTTTTAAGATAAAGCTTCCTAATGGCGTGTAAACTTTGCATATGT
3521 ATGTAGTTTGATACATATTGTCACATTTGAAAATCTTGTGGGTTGTAACTGGTTTTATACAAAATATCGAATAGTGGAAA
3601 TTGTATAATTACAATCATGTAATTAAAAGTATTAACCCAACAGCCAAAAAAAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' ucggUCGGU-UGAGUGUCACGUcu 5'
              ||||| |   :|||||||  
Target 5' ttggAGCCACAGAAGCAGTGCAct 3'
2939 - 2962 139.00 -17.70
2
miRNA  3' ucGGU-CGGUUGAGUGUCACGUCu 5'
            ||| |:| |||  ||||| || 
Target 5' ctCCATGTC-ACT--CAGTGGAGa 3'
3153 - 3173 128.00 -17.90
3
miRNA  3' ucgGUCGGUUGAGUG-UCACGUCu 5'
             ||| |: |||:: || |||| 
Target 5' gagCAG-CGCCTCGTGAGAGCAGa 3'
2626 - 2648 127.00 -16.60
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN30156478 18 COSMIC
COSN23524063 34 COSMIC
COSN24303050 41 COSMIC
COSN30482586 48 COSMIC
COSN30465743 127 COSMIC
COSN31554378 230 COSMIC
COSN31579097 542 COSMIC
COSN9288341 685 COSMIC
COSN20106372 887 COSMIC
COSN29591856 935 COSMIC
COSN22215977 996 COSMIC
COSN26633254 1072 COSMIC
COSN20106370 1142 COSMIC
COSN15856796 1566 COSMIC
COSN9528920 1594 COSMIC
COSN9528919 1595 COSMIC
COSN23263024 1907 COSMIC
COSN26668527 2132 COSMIC
COSN31582522 2156 COSMIC
COSN6605026 2248 COSMIC
COSN20106368 2360 COSMIC
COSN21349644 2553 COSMIC
COSN21988401 2674 COSMIC
COSN6400573 2968 COSMIC
COSN20386269 3093 COSMIC
COSN31513955 3160 COSMIC
COSN20106366 3245 COSMIC
COSN30544474 3255 COSMIC
COSN31479576 3273 COSMIC
COSN28749212 3309 COSMIC
COSN31590924 3370 COSMIC
COSN31538138 3465 COSMIC
COSN14512561 3558 COSMIC
COSN31520212 3588 COSMIC
COSN31534700 3609 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1194731593 3 dbSNP
rs1337104902 15 dbSNP
rs1279672759 18 dbSNP
rs1218805879 19 dbSNP
rs1367750661 20 dbSNP
rs1436289956 26 dbSNP
rs370655432 33 dbSNP
rs376560205 34 dbSNP
rs764402076 36 dbSNP
rs760789319 40 dbSNP
rs1340377331 49 dbSNP
rs1248258196 55 dbSNP
rs537418649 65 dbSNP
rs1345998416 68 dbSNP
rs1355525950 71 dbSNP
rs749896189 76 dbSNP
rs1316502159 86 dbSNP
rs1263804931 88 dbSNP
rs73542429 88 dbSNP
rs1187707229 89 dbSNP
rs1245801199 95 dbSNP
rs1375739078 109 dbSNP
rs1446150580 110 dbSNP
rs1326395136 112 dbSNP
rs937358567 122 dbSNP
rs1367332837 125 dbSNP
rs1455965280 135 dbSNP
rs1161910818 140 dbSNP
rs186140366 144 dbSNP
rs1458083880 146 dbSNP
rs1320383238 164 dbSNP
rs1396865450 172 dbSNP
rs1363253112 186 dbSNP
rs1313729574 188 dbSNP
rs1339905397 215 dbSNP
rs1242705406 246 dbSNP
rs533981709 254 dbSNP
rs1207869470 266 dbSNP
rs1266051535 267 dbSNP
rs1462505466 268 dbSNP
rs181584959 282 dbSNP
rs1255058405 290 dbSNP
rs16911004 293 dbSNP
rs147292263 298 dbSNP
rs1387214526 299 dbSNP
rs1184254241 302 dbSNP
rs111602599 304 dbSNP
rs867357455 306 dbSNP
rs1386846042 316 dbSNP
rs987937812 326 dbSNP
rs1184166055 329 dbSNP
rs1303574656 330 dbSNP
rs144116056 332 dbSNP
rs936591329 354 dbSNP
rs1290361761 358 dbSNP
rs79665294 369 dbSNP
rs77268641 370 dbSNP
rs1350996406 372 dbSNP
rs1227663213 378 dbSNP
rs925240072 379 dbSNP
rs985748184 380 dbSNP
rs1210579835 384 dbSNP
rs1362174980 389 dbSNP
rs1293081773 393 dbSNP
rs569231075 394 dbSNP
rs551001525 396 dbSNP
rs953099141 405 dbSNP
rs769993260 407 dbSNP
rs16911003 417 dbSNP
rs1182036954 441 dbSNP
rs1410405806 455 dbSNP
rs1435216554 473 dbSNP
rs962107747 482 dbSNP
rs1377277396 488 dbSNP
rs1464766782 492 dbSNP
rs1015061057 500 dbSNP
rs1006434047 503 dbSNP
rs1409295701 507 dbSNP
rs1277418438 510 dbSNP
rs1369716793 511 dbSNP
rs952265952 522 dbSNP
rs562413717 530 dbSNP
rs188869804 533 dbSNP
rs1230093529 537 dbSNP
rs528682585 538 dbSNP
rs1403072313 549 dbSNP
rs1202423986 557 dbSNP
rs1231654081 562 dbSNP
rs1489790948 572 dbSNP
rs186661774 580 dbSNP
rs545969684 585 dbSNP
rs1431834626 588 dbSNP
rs1046155661 600 dbSNP
rs1391036117 602 dbSNP
rs1429175681 603 dbSNP
rs577692719 605 dbSNP
rs1010282780 624 dbSNP
rs748438299 625 dbSNP
rs891916679 627 dbSNP
rs555980346 633 dbSNP
rs16911001 643 dbSNP
rs1292892861 655 dbSNP
rs1365173966 662 dbSNP
rs1405878046 667 dbSNP
rs1160570211 673 dbSNP
rs776953626 690 dbSNP
rs546974243 694 dbSNP
rs769061287 694 dbSNP
rs1291447795 697 dbSNP
rs747501756 704 dbSNP
rs1246528628 706 dbSNP
rs1233777146 712 dbSNP
rs1324002841 716 dbSNP
rs1197749428 718 dbSNP
rs112847248 727 dbSNP
rs1467377122 728 dbSNP
rs1050280014 730 dbSNP
rs75597745 752 dbSNP
rs1270257318 756 dbSNP
rs555722370 757 dbSNP
rs181253203 760 dbSNP
rs1248881952 762 dbSNP
rs1449137809 767 dbSNP
rs1186732132 770 dbSNP
rs931903337 772 dbSNP
rs922925776 777 dbSNP
rs1163904224 779 dbSNP
rs1348061826 781 dbSNP
rs1458604245 782 dbSNP
rs1321051380 785 dbSNP
rs1216442091 786 dbSNP
rs771546146 804 dbSNP
rs1432511236 806 dbSNP
rs1285615066 815 dbSNP
rs1051155459 819 dbSNP
rs1352432403 823 dbSNP
rs1281510918 824 dbSNP
rs1379180431 825 dbSNP
rs1227258462 829 dbSNP
rs1225167888 836 dbSNP
rs961817696 837 dbSNP
rs1333423651 839 dbSNP
rs1350903935 849 dbSNP
rs907659016 849 dbSNP
rs1273839739 851 dbSNP
rs1221476326 873 dbSNP
rs1464749068 879 dbSNP
rs1347087726 880 dbSNP
rs1303756009 882 dbSNP
rs1399307861 886 dbSNP
rs1343558001 887 dbSNP
rs1181412348 895 dbSNP
rs1058001 896 dbSNP
rs866338538 897 dbSNP
rs112876148 898 dbSNP
rs1387571373 898 dbSNP
rs375683108 898 dbSNP
rs7048158 902 dbSNP
rs1335718674 912 dbSNP
rs1359441646 921 dbSNP
rs745385840 931 dbSNP
rs1034530779 937 dbSNP
rs1001761498 941 dbSNP
rs75256271 945 dbSNP
rs1222433983 946 dbSNP
rs1289562830 946 dbSNP
rs1328838232 946 dbSNP
rs62558788 948 dbSNP
rs972059993 953 dbSNP
rs1443275736 955 dbSNP
rs1209468211 957 dbSNP
rs1481628326 961 dbSNP
rs1430426585 967 dbSNP
rs1193650416 970 dbSNP
rs1024307682 975 dbSNP
rs1485167134 976 dbSNP
rs1411167867 984 dbSNP
rs1468398342 985 dbSNP
rs1010689350 987 dbSNP
rs1425394531 994 dbSNP
rs539253741 996 dbSNP
rs1054495212 998 dbSNP
rs1447019384 1007 dbSNP
rs1371828383 1015 dbSNP
rs1277483806 1028 dbSNP
rs1000257282 1061 dbSNP
rs903665269 1065 dbSNP
rs1325491185 1070 dbSNP
rs1440459034 1072 dbSNP
rs1050693033 1073 dbSNP
rs772606320 1074 dbSNP
rs1218818738 1083 dbSNP
rs778631698 1091 dbSNP
rs1283656899 1095 dbSNP
rs1278496063 1098 dbSNP
rs1344324119 1099 dbSNP
rs189695330 1108 dbSNP
rs1250985213 1112 dbSNP
rs550758616 1114 dbSNP
rs901795743 1129 dbSNP
rs1359813837 1131 dbSNP
rs770733243 1134 dbSNP
rs1171291567 1137 dbSNP
rs1431593462 1142 dbSNP
rs1358585078 1143 dbSNP
rs78870050 1156 dbSNP
rs1167483618 1158 dbSNP
rs1301511605 1159 dbSNP
rs1396362133 1159 dbSNP
rs34988377 1159 dbSNP
rs71368272 1159 dbSNP
rs767596104 1159 dbSNP
rs775772828 1159 dbSNP
rs796095283 1159 dbSNP
rs879069029 1159 dbSNP
rs879198137 1159 dbSNP
rs1471072658 1160 dbSNP
rs62558787 1163 dbSNP
rs1040031190 1166 dbSNP
rs529291478 1167 dbSNP
rs140091678 1169 dbSNP
rs975668737 1171 dbSNP
rs1290517105 1179 dbSNP
rs984511601 1188 dbSNP
rs930389094 1192 dbSNP
rs368014026 1196 dbSNP
rs1249497579 1199 dbSNP
rs1187545394 1203 dbSNP
rs756937227 1206 dbSNP
rs12376442 1210 dbSNP
rs1187359580 1212 dbSNP
rs1241971467 1216 dbSNP
rs1370793676 1218 dbSNP
rs980717119 1219 dbSNP
rs1165437510 1226 dbSNP
rs1201439316 1238 dbSNP
rs971667055 1240 dbSNP
rs1324347383 1248 dbSNP
rs1263330672 1253 dbSNP
rs1025008587 1255 dbSNP
rs988811772 1260 dbSNP
rs1305489994 1269 dbSNP
rs956017989 1275 dbSNP
rs1215089203 1277 dbSNP
rs16910999 1278 dbSNP
rs1207668294 1285 dbSNP
rs1312986319 1290 dbSNP
rs1259237047 1300 dbSNP
rs1454818923 1303 dbSNP
rs1187721120 1306 dbSNP
rs748642931 1318 dbSNP
rs1383842788 1319 dbSNP
rs1475195964 1329 dbSNP
rs1000201766 1335 dbSNP
rs889868006 1337 dbSNP
rs1414602853 1342 dbSNP
rs1458103231 1357 dbSNP
rs528793092 1365 dbSNP
rs777661835 1388 dbSNP
rs1330877168 1389 dbSNP
rs1397851149 1391 dbSNP
rs75707600 1392 dbSNP
rs1334974436 1393 dbSNP
rs1354711770 1413 dbSNP
rs1231324138 1420 dbSNP
rs1290169981 1422 dbSNP
rs1460791246 1427 dbSNP
rs1028821188 1429 dbSNP
rs996446575 1432 dbSNP
rs901746119 1442 dbSNP
rs1484053429 1444 dbSNP
rs867050427 1449 dbSNP
rs16910997 1463 dbSNP
rs1405267476 1465 dbSNP
rs1254808438 1469 dbSNP
rs1484422966 1477 dbSNP
rs558055005 1488 dbSNP
rs546031263 1489 dbSNP
rs1048762473 1503 dbSNP
rs930377700 1504 dbSNP
rs1467816153 1508 dbSNP
rs1243387984 1513 dbSNP
rs927069852 1514 dbSNP
rs1413018252 1524 dbSNP
rs980283881 1531 dbSNP
rs1351091658 1532 dbSNP
rs950289663 1541 dbSNP
rs917444639 1544 dbSNP
rs989442053 1545 dbSNP
rs756001855 1546 dbSNP
rs956297260 1552 dbSNP
rs1032934085 1555 dbSNP
rs143071066 1556 dbSNP
rs1254591512 1558 dbSNP
rs111360327 1559 dbSNP
rs954120542 1561 dbSNP
rs1435306388 1563 dbSNP
rs1199766792 1578 dbSNP
rs752608717 1586 dbSNP
rs1248291724 1589 dbSNP
rs562610396 1591 dbSNP
rs1360185646 1603 dbSNP
rs1306639688 1606 dbSNP
rs1170634959 1619 dbSNP
rs1028854642 1625 dbSNP
rs996004217 1636 dbSNP
rs1296414876 1637 dbSNP
rs184370134 1641 dbSNP
rs1018787957 1642 dbSNP
rs1368422952 1652 dbSNP
rs1229938533 1655 dbSNP
rs1274793323 1659 dbSNP
rs1004765276 1666 dbSNP
rs1204386793 1671 dbSNP
rs767367172 1676 dbSNP
rs191322996 1678 dbSNP
rs1364271166 1682 dbSNP
rs994536256 1688 dbSNP
rs759573366 1692 dbSNP
rs1452863935 1693 dbSNP
rs1190780531 1694 dbSNP
rs1426005627 1703 dbSNP
rs1390821762 1726 dbSNP
rs1428001243 1731 dbSNP
rs1168165970 1732 dbSNP
rs1044516768 1733 dbSNP
rs949845108 1741 dbSNP
rs1466913252 1743 dbSNP
rs1157998067 1753 dbSNP
rs1416920739 1765 dbSNP
rs1436762506 1769 dbSNP
rs1252459039 1779 dbSNP
rs917370088 1791 dbSNP
rs1053217982 1798 dbSNP
rs115532576 1812 dbSNP
rs750467599 1820 dbSNP
rs1490111807 1833 dbSNP
rs867233060 1840 dbSNP
rs765344101 1848 dbSNP
rs1272894132 1850 dbSNP
rs1224620108 1851 dbSNP
rs540145046 1859 dbSNP
rs540214047 1867 dbSNP
rs1490550254 1903 dbSNP
rs189532029 1907 dbSNP
rs376941789 1908 dbSNP
rs1318983822 1912 dbSNP
rs926240117 1913 dbSNP
rs1415839978 1914 dbSNP
rs1223293449 1920 dbSNP
rs1424381212 1920 dbSNP
rs558074497 1929 dbSNP
rs978719300 1936 dbSNP
rs531311899 1939 dbSNP
rs1320738045 1940 dbSNP
rs149093259 1945 dbSNP
rs1304118611 1946 dbSNP
rs921292404 1960 dbSNP
rs575298016 1961 dbSNP
rs1293221255 1968 dbSNP
rs1406079237 1969 dbSNP
rs557450125 1970 dbSNP
rs41306475 1976 dbSNP
rs776861577 1980 dbSNP
rs1213708742 1995 dbSNP
rs1239230828 2003 dbSNP
rs1486055427 2005 dbSNP
rs146490370 2015 dbSNP
rs1004754015 2019 dbSNP
rs768969407 2020 dbSNP
rs184856448 2027 dbSNP
rs950601229 2029 dbSNP
rs1406748989 2035 dbSNP
rs1398642592 2038 dbSNP
rs1177832763 2046 dbSNP
rs1027599254 2068 dbSNP
rs994775841 2072 dbSNP
rs1354189922 2074 dbSNP
rs868297646 2076 dbSNP
rs1159307589 2078 dbSNP
rs1280560799 2080 dbSNP
rs568201049 2086 dbSNP
rs1044078350 2094 dbSNP
rs7860447 2098 dbSNP
rs1201563059 2099 dbSNP
rs1480704580 2100 dbSNP
rs1260909531 2106 dbSNP
rs144075626 2134 dbSNP
rs570848260 2137 dbSNP
rs1278092971 2141 dbSNP
rs1486853883 2143 dbSNP
rs1261532216 2144 dbSNP
rs552411004 2148 dbSNP
rs1192512195 2154 dbSNP
rs1203263858 2162 dbSNP
rs1321931521 2173 dbSNP
rs1171246400 2174 dbSNP
rs1285561277 2175 dbSNP
rs1053208007 2177 dbSNP
rs934856750 2186 dbSNP
rs1224711158 2189 dbSNP
rs531158015 2202 dbSNP
rs563698484 2204 dbSNP
rs1276812250 2208 dbSNP
rs1293999122 2208 dbSNP
rs1372086033 2209 dbSNP
rs10820739 2214 dbSNP
rs932931148 2215 dbSNP
rs1386409999 2216 dbSNP
rs1196238364 2225 dbSNP
rs772452465 2230 dbSNP
rs976819486 2242 dbSNP
rs965839184 2252 dbSNP
rs1453473539 2255 dbSNP
rs529010981 2264 dbSNP
rs192274798 2268 dbSNP
rs540272544 2276 dbSNP
rs746426341 2284 dbSNP
rs1168934441 2289 dbSNP
rs1396485297 2316 dbSNP
rs950509090 2332 dbSNP
rs1328392484 2334 dbSNP
rs1372440158 2338 dbSNP
rs1440384092 2342 dbSNP
rs1190850410 2349 dbSNP
rs1027504729 2351 dbSNP
rs1228322175 2352 dbSNP
rs994724631 2352 dbSNP
rs1430442722 2354 dbSNP
rs1262503712 2356 dbSNP
rs970001186 2357 dbSNP
rs1467895895 2363 dbSNP
rs3839895 2363 dbSNP
rs397841529 2363 dbSNP
rs1460128456 2364 dbSNP
rs1447063622 2365 dbSNP
rs1191928663 2370 dbSNP
rs1265190789 2372 dbSNP
rs572837872 2372 dbSNP
rs1167765432 2379 dbSNP
rs1418977379 2402 dbSNP
rs895540030 2424 dbSNP
rs1324119799 2430 dbSNP
rs1031406679 2433 dbSNP
rs1204736309 2437 dbSNP
rs1382819303 2438 dbSNP
rs1317789127 2442 dbSNP
rs1324788193 2448 dbSNP
rs3802443 2455 dbSNP
rs112098005 2456 dbSNP
rs1333801322 2457 dbSNP
rs1043213458 2460 dbSNP
rs770587804 2462 dbSNP
rs1350992703 2467 dbSNP
rs1327729624 2468 dbSNP
rs1258995290 2482 dbSNP
rs1443671747 2484 dbSNP
rs932894600 2485 dbSNP
rs1451225174 2487 dbSNP
rs1380151141 2499 dbSNP
rs3802442 2500 dbSNP
rs1163278721 2503 dbSNP
rs1365736867 2505 dbSNP
rs1414826493 2506 dbSNP
rs1395498461 2513 dbSNP
rs1454460454 2528 dbSNP
rs1158246786 2531 dbSNP
rs7021496 2538 dbSNP
rs1416709711 2542 dbSNP
rs1313391466 2545 dbSNP
rs1354812417 2546 dbSNP
rs1412663833 2551 dbSNP
rs1308938618 2553 dbSNP
rs1041431144 2554 dbSNP
rs1390911622 2555 dbSNP
rs944076818 2564 dbSNP
rs1442810708 2565 dbSNP
rs1346490838 2575 dbSNP
rs556910714 2582 dbSNP
rs908563847 2588 dbSNP
rs1245213952 2591 dbSNP
rs1184369192 2596 dbSNP
rs1437685422 2597 dbSNP
rs982836638 2601 dbSNP
rs1248831785 2606 dbSNP
rs75622124 2610 dbSNP
rs1253055291 2617 dbSNP
rs1198119702 2625 dbSNP
rs1340723902 2629 dbSNP
rs931395430 2632 dbSNP
rs920388870 2633 dbSNP
rs1356556265 2638 dbSNP
rs1316793362 2639 dbSNP
rs1374746974 2640 dbSNP
rs1448279240 2654 dbSNP
rs1432729871 2656 dbSNP
rs777481163 2658 dbSNP
rs1335002260 2659 dbSNP
rs755877056 2662 dbSNP
rs146755174 2674 dbSNP
rs959708089 2675 dbSNP
rs1031311850 2682 dbSNP
rs1345162268 2683 dbSNP
rs1208563281 2685 dbSNP
rs1253614315 2687 dbSNP
rs368906646 2692 dbSNP
rs752750808 2693 dbSNP
rs188366564 2696 dbSNP
rs1021740282 2707 dbSNP
rs112781850 2709 dbSNP
rs900065246 2711 dbSNP
rs1041277340 2715 dbSNP
rs1172373520 2725 dbSNP
rs944302023 2727 dbSNP
rs570653039 2731 dbSNP
rs1184453276 2738 dbSNP
rs1296289668 2743 dbSNP
rs1396442580 2764 dbSNP
rs553037526 2767 dbSNP
rs765396998 2769 dbSNP
rs1324812025 2771 dbSNP
rs1047098947 2772 dbSNP
rs1438693813 2776 dbSNP
rs1298364090 2777 dbSNP
rs1308638182 2780 dbSNP
rs1227121687 2781 dbSNP
rs1256503885 2787 dbSNP
rs931380604 2790 dbSNP
rs1214478308 2794 dbSNP
rs920040073 2801 dbSNP
rs1467184027 2806 dbSNP
rs1188400052 2815 dbSNP
rs1220896746 2818 dbSNP
rs1420116627 2826 dbSNP
rs534703451 2832 dbSNP
rs1249419847 2835 dbSNP
rs973630243 2839 dbSNP
rs1293291590 2846 dbSNP
rs553885008 2850 dbSNP
rs373640645 2851 dbSNP
rs1349548001 2855 dbSNP
rs1277363201 2861 dbSNP
rs749680874 2862 dbSNP
rs145099618 2863 dbSNP
rs60778979 2863 dbSNP
rs1302545255 2864 dbSNP
rs1360685265 2866 dbSNP
rs1382115449 2868 dbSNP
rs1276859615 2872 dbSNP
rs1337331379 2873 dbSNP
rs1272749055 2874 dbSNP
rs149993411 2874 dbSNP
rs1320194717 2875 dbSNP
rs1218242503 2876 dbSNP
rs185045930 2880 dbSNP
rs992729257 2886 dbSNP
rs1191347856 2887 dbSNP
rs1259606277 2892 dbSNP
rs1475407954 2893 dbSNP
rs1164006002 2897 dbSNP
rs1415186059 2902 dbSNP
rs1400140602 2904 dbSNP
rs1383093375 2905 dbSNP
rs959956008 2931 dbSNP
rs761828344 2932 dbSNP
rs532277405 2944 dbSNP
rs977091020 2959 dbSNP
rs968427271 2966 dbSNP
rs1021398785 2969 dbSNP
rs1415756662 2973 dbSNP
rs868535546 2978 dbSNP
rs997019074 2987 dbSNP
rs1377472217 3000 dbSNP
rs866531309 3001 dbSNP
rs1285231364 3004 dbSNP
rs1481689028 3006 dbSNP
rs754843158 3009 dbSNP
rs1020211935 3012 dbSNP
rs1282348580 3012 dbSNP
rs1485989005 3012 dbSNP
rs1008443167 3018 dbSNP
rs1471043411 3024 dbSNP
rs570309387 3029 dbSNP
rs1177368756 3040 dbSNP
rs1437272241 3041 dbSNP
rs1175027581 3044 dbSNP
rs1375544500 3052 dbSNP
rs1445864066 3060 dbSNP
rs192728512 3064 dbSNP
rs1312807411 3065 dbSNP
rs1357724623 3077 dbSNP
rs1444883565 3080 dbSNP
rs1280351385 3081 dbSNP
rs530307668 3083 dbSNP
rs370509776 3084 dbSNP
rs995534226 3088 dbSNP
rs1282374732 3092 dbSNP
rs546672776 3093 dbSNP
rs528113879 3094 dbSNP
rs1045130254 3106 dbSNP
rs1276434958 3109 dbSNP
rs948147995 3110 dbSNP
rs188072402 3111 dbSNP
rs1205041496 3123 dbSNP
rs1231923817 3138 dbSNP
rs1275311420 3147 dbSNP
rs1430110861 3148 dbSNP
rs1437383870 3153 dbSNP
rs915711681 3157 dbSNP
rs545767481 3161 dbSNP
rs1057366652 3166 dbSNP
rs1324753701 3173 dbSNP
rs751567759 3185 dbSNP
rs1423759851 3194 dbSNP
rs1411966521 3196 dbSNP
rs1330033963 3208 dbSNP
rs1354343508 3209 dbSNP
rs1444790626 3218 dbSNP
rs924560079 3223 dbSNP
rs1371749288 3232 dbSNP
rs145969119 3243 dbSNP
rs138315533 3245 dbSNP
rs397725931 3247 dbSNP
rs56167318 3247 dbSNP
rs968332206 3248 dbSNP
rs1271972669 3249 dbSNP
rs914238377 3249 dbSNP
rs1215111857 3250 dbSNP
rs975157251 3253 dbSNP
rs1253299685 3255 dbSNP
rs563593941 3264 dbSNP
rs1467634723 3271 dbSNP
rs964139144 3271 dbSNP
rs1471134546 3272 dbSNP
rs1019780460 3273 dbSNP
rs10991382 3276 dbSNP
rs1423280445 3285 dbSNP
rs1464406762 3298 dbSNP
rs1167357496 3311 dbSNP
rs574250820 3316 dbSNP
rs1321724920 3322 dbSNP
rs1328309580 3327 dbSNP
rs553051653 3328 dbSNP
rs1269531522 3330 dbSNP
rs1239849162 3331 dbSNP
rs1190166784 3338 dbSNP
rs1234977199 3339 dbSNP
rs1273386999 3344 dbSNP
rs1333760417 3346 dbSNP
rs36021882 3349 dbSNP
rs1465045235 3350 dbSNP
rs1262068674 3365 dbSNP
rs1201551013 3368 dbSNP
rs1285706109 3380 dbSNP
rs79785267 3380 dbSNP
rs1447087522 3381 dbSNP
rs1194450286 3384 dbSNP
rs1263174462 3396 dbSNP
rs1477044360 3402 dbSNP
rs995775856 3402 dbSNP
rs1418819018 3403 dbSNP
rs1279322879 3406 dbSNP
rs898466329 3407 dbSNP
rs766655821 3409 dbSNP
rs760852373 3410 dbSNP
rs1387155437 3411 dbSNP
rs1045479076 3424 dbSNP
rs1297498549 3430 dbSNP
rs1338387183 3438 dbSNP
rs1416363785 3438 dbSNP
rs1213903390 3443 dbSNP
rs1293624736 3444 dbSNP
rs1360011670 3453 dbSNP
rs1262139533 3455 dbSNP
rs1271969680 3456 dbSNP
rs1204109059 3458 dbSNP
rs1285894678 3468 dbSNP
rs1487622635 3473 dbSNP
rs1213671696 3475 dbSNP
rs182268626 3476 dbSNP
rs1382341859 3479 dbSNP
rs376466937 3490 dbSNP
rs576913341 3499 dbSNP
rs1056953641 3501 dbSNP
rs765256265 3502 dbSNP
rs1158172597 3504 dbSNP
rs924466804 3508 dbSNP
rs1360105626 3514 dbSNP
rs1313418359 3515 dbSNP
rs1401165385 3519 dbSNP
rs1170432602 3525 dbSNP
rs1408692095 3529 dbSNP
rs189572183 3531 dbSNP
rs1416824816 3532 dbSNP
rs1041589236 3536 dbSNP
rs1238762884 3538 dbSNP
rs1306395453 3565 dbSNP
rs187883928 3569 dbSNP
rs1237070634 3578 dbSNP
rs1449478680 3579 dbSNP
rs761912811 3585 dbSNP
rs1281737495 3588 dbSNP
rs537453308 3589 dbSNP
rs577337652 3599 dbSNP
rs1484143332 3603 dbSNP
rs552058962 3614 dbSNP
rs1438557655 3619 dbSNP
rs35865246 3629 dbSNP
rs1378488944 3630 dbSNP
rs1455653963 3637 dbSNP
rs912326902 3638 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HEK293S
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in GSM1084078. RNA binding protein: AGO2. Condition:CLIP_nohippuristanol_rep2_AbnovaAb ...

- Karginov FV; Hannon GJ, 2013, Genes & development.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' ucggucGGUUGAGUGUCACGUCu 5'
                |||:  :: ||||||| 
Target 5' ---uguCCAGGCUGGAGUGCAGu 3'
1 - 20
Article - Karginov FV; Hannon GJ
- Genes & development, 2013
When adapting to environmental stress, cells attenuate and reprogram their translational output. In part, these altered translation profiles are established through changes in the interactions between RNA-binding proteins and mRNAs. The Argonaute 2 (Ago2)/microRNA (miRNA) machinery has been shown to participate in stress-induced translational up-regulation of a particular mRNA, CAT-1; however, a detailed, transcriptome-wide understanding of the involvement of Ago2 in the process has been lacking. Here, we profiled the overall changes in Ago2-mRNA interactions upon arsenite stress by cross-linking immunoprecipitation (CLIP) followed by high-throughput sequencing (CLIP-seq). Ago2 displayed a significant remodeling of its transcript occupancy, with the majority of 3' untranslated region (UTR) and coding sequence (CDS) sites exhibiting stronger interaction. Interestingly, target sites that were destined for release from Ago2 upon stress were depleted in miRNA complementarity signatures, suggesting an alternative mode of interaction. To compare the changes in Ago2-binding patterns across transcripts with changes in their translational states, we measured mRNA profiles on ribosome/polysome gradients by RNA sequencing (RNA-seq). Increased Ago2 occupancy correlated with stronger repression of translation for those mRNAs, as evidenced by a shift toward lighter gradient fractions upon stress, while release of Ago2 was associated with the limited number of transcripts that remained translated. Taken together, these data point to a role for Ago2 and the mammalian miRNAs in mediating the translational component of the stress response.
LinkOut: [PMID: 23824327]
CLIP-seq Support 1 for dataset GSM1084078
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_nohippuristanol_rep2_AbnovaAb
Location of target site ENST00000265659.2 | 3UTR | UGUCCAGGCUGGAGUGCAGUGGCGC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
296 hsa-miR-4793-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT092332 EDEM1 ER degradation enhancing alpha-mannosidase like protein 1 2 6
MIRT131237 ATG2A autophagy related 2A 2 2
MIRT145926 ANKFY1 ankyrin repeat and FYVE domain containing 1 2 2
MIRT206559 SOCS5 suppressor of cytokine signaling 5 2 8
MIRT226455 TP53INP1 tumor protein p53 inducible nuclear protein 1 2 2
MIRT337662 ZNF695 zinc finger protein 695 2 2
MIRT405828 SIX4 SIX homeobox 4 2 2
MIRT455113 RILPL1 Rab interacting lysosomal protein like 1 2 2
MIRT456756 TMEM239 transmembrane protein 239 2 4
MIRT457974 RGS9BP regulator of G protein signaling 9 binding protein 2 2
MIRT458173 LYRM4 LYR motif containing 4 2 4
MIRT458245 SLC9A7 solute carrier family 9 member A7 2 2
MIRT466145 TMEM120B transmembrane protein 120B 2 2
MIRT474981 KATNAL1 katanin catalytic subunit A1 like 1 2 2
MIRT475601 HMGB2 high mobility group box 2 2 4
MIRT480759 BMP3 bone morphogenetic protein 3 2 4
MIRT481156 AVL9 AVL9 cell migration associated 2 2
MIRT482155 AK2 adenylate kinase 2 2 2
MIRT488386 VAV3 vav guanine nucleotide exchange factor 3 2 6
MIRT496575 KIF18B kinesin family member 18B 2 2
MIRT498411 TXNDC16 thioredoxin domain containing 16 2 4
MIRT504547 ZNF417 zinc finger protein 417 2 6
MIRT505417 TCF7L2 transcription factor 7 like 2 2 2
MIRT509349 ALDH9A1 aldehyde dehydrogenase 9 family member A1 2 6
MIRT512164 CD164 CD164 molecule 2 6
MIRT517238 PRIM1 DNA primase subunit 1 2 2
MIRT518671 KCNMB1 potassium calcium-activated channel subfamily M regulatory beta subunit 1 2 2
MIRT519298 MLH1 mutL homolog 1 2 2
MIRT523662 FOSL2 FOS like 2, AP-1 transcription factor subunit 2 2
MIRT525452 GPATCH2L G-patch domain containing 2 like 2 2
MIRT539847 ZNF766 zinc finger protein 766 2 2
MIRT540076 SSH3 slingshot protein phosphatase 3 2 2
MIRT540320 PIGR polymeric immunoglobulin receptor 2 2
MIRT540548 MAGI3 membrane associated guanylate kinase, WW and PDZ domain containing 3 2 2
MIRT540759 UTP6 UTP6, small subunit processome component 2 2
MIRT541545 HIATL2 major facilitator superfamily domain containing 14C 2 2
MIRT541553 SLC35E1 solute carrier family 35 member E1 2 2
MIRT541666 ATP8B3 ATPase phospholipid transporting 8B3 2 4
MIRT541722 TFDP2 transcription factor Dp-2 2 2
MIRT541800 DUSP28 dual specificity phosphatase 28 2 2
MIRT541816 SMU1 DNA replication regulator and spliceosomal factor 2 2
MIRT541907 VWA7 von Willebrand factor A domain containing 7 2 2
MIRT542154 UGDH UDP-glucose 6-dehydrogenase 2 2
MIRT542207 C14orf142 GON7, KEOPS complex subunit homolog 2 2
MIRT542233 FUT9 fucosyltransferase 9 2 2
MIRT542320 SERPING1 serpin family G member 1 2 2
MIRT542369 PAICS phosphoribosylaminoimidazole carboxylase and phosphoribosylaminoimidazolesuccinocarboxamide synthase 2 2
MIRT542476 APOC3 apolipoprotein C3 2 2
MIRT542641 TIMM8A translocase of inner mitochondrial membrane 8A 2 2
MIRT542660 TAF11 TATA-box binding protein associated factor 11 2 2
MIRT542749 PRRG4 proline rich and Gla domain 4 2 4
MIRT542789 PLEKHA3 pleckstrin homology domain containing A3 2 2
MIRT545442 FGFRL1 fibroblast growth factor receptor like 1 2 2
MIRT546206 TOR1AIP2 torsin 1A interacting protein 2 2 2
MIRT552270 RAB3D RAB3D, member RAS oncogene family 2 2
MIRT552655 ZADH2 zinc binding alcohol dehydrogenase domain containing 2 2 2
MIRT554134 SMARCA5 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 2 2
MIRT556795 KIAA1958 KIAA1958 2 2
MIRT564762 ZHX3 zinc fingers and homeoboxes 3 2 2
MIRT569428 STX7 syntaxin 7 2 2
MIRT573245 ZBTB46 zinc finger and BTB domain containing 46 2 2
MIRT607390 LANCL3 LanC like 3 2 2
MIRT607430 NOTCH2NL notch 2 N-terminal like 2 2
MIRT607452 ZNF543 zinc finger protein 543 2 2
MIRT607580 TANGO2 transport and golgi organization 2 homolog 2 2
MIRT607748 ANGPT4 angiopoietin 4 2 2
MIRT607907 SPRYD4 SPRY domain containing 4 2 2
MIRT608703 GMPR guanosine monophosphate reductase 2 2
MIRT612127 NDUFA10 NADH:ubiquinone oxidoreductase subunit A10 2 2
MIRT612786 MAP3K9 mitogen-activated protein kinase kinase kinase 9 2 4
MIRT616692 LPL lipoprotein lipase 2 2
MIRT617045 ZNF610 zinc finger protein 610 2 2
MIRT617091 ZNF43 zinc finger protein 43 2 2
MIRT617314 MBOAT1 membrane bound O-acyltransferase domain containing 1 2 2
MIRT617355 MELK maternal embryonic leucine zipper kinase 2 2
MIRT617486 ALG9 ALG9, alpha-1,2-mannosyltransferase 2 2
MIRT617579 NDUFB5 NADH:ubiquinone oxidoreductase subunit B5 2 2
MIRT617669 RSRC1 arginine and serine rich coiled-coil 1 2 2
MIRT617722 TRAPPC2 trafficking protein particle complex 2 2 4
MIRT617893 PTCHD3 patched domain containing 3 2 2
MIRT617982 ZNF234 zinc finger protein 234 2 4
MIRT618434 MYLK3 myosin light chain kinase 3 2 4
MIRT618732 HIST1H2AH histone cluster 1 H2A family member h 2 2
MIRT619045 CASS4 Cas scaffolding protein family member 4 2 2
MIRT619573 ATAT1 alpha tubulin acetyltransferase 1 2 4
MIRT619671 CYP1A2 cytochrome P450 family 1 subfamily A member 2 2 2
MIRT619887 ABHD17B abhydrolase domain containing 17B 2 2
MIRT620519 SNRPD1 small nuclear ribonucleoprotein D1 polypeptide 2 4
MIRT620535 AVPR1A arginine vasopressin receptor 1A 2 2
MIRT620996 C19orf52 translocase of inner mitochondrial membrane 29 2 2
MIRT621304 YIPF4 Yip1 domain family member 4 2 2
MIRT622086 SRPX2 sushi repeat containing protein, X-linked 2 2 2
MIRT622168 SMYD1 SET and MYND domain containing 1 2 2
MIRT622543 PXMP4 peroxisomal membrane protein 4 2 2
MIRT622761 PGM3 phosphoglucomutase 3 2 2
MIRT622885 PDCL3 phosducin like 3 2 4
MIRT623130 NDUFC2 NADH:ubiquinone oxidoreductase subunit C2 2 2
MIRT624840 ACAP2 ArfGAP with coiled-coil, ankyrin repeat and PH domains 2 2 2
MIRT625047 MBD3 methyl-CpG binding domain protein 3 2 2
MIRT625059 ZNF556 zinc finger protein 556 2 2
MIRT625508 PPAPDC1A phospholipid phosphatase 4 2 2
MIRT625573 ANKRD42 ankyrin repeat domain 42 2 2
MIRT626133 SNRNP48 small nuclear ribonucleoprotein U11/U12 subunit 48 2 2
MIRT626327 LRTOMT leucine rich transmembrane and O-methyltransferase domain containing 2 2
MIRT626765 CDC14B cell division cycle 14B 2 2
MIRT626798 CSE1L chromosome segregation 1 like 2 2
MIRT627212 ZC3H12B zinc finger CCCH-type containing 12B 2 2
MIRT627225 ZBTB8B zinc finger and BTB domain containing 8B 2 4
MIRT627256 XKR4 XK related 4 2 2
MIRT628190 GATSL2 cytosolic arginine sensor for mTORC1 subunit 2 2 2
MIRT628466 AHSA2 activator of HSP90 ATPase homolog 2 2 2
MIRT628627 CCT4 chaperonin containing TCP1 subunit 4 2 2
MIRT629040 KLLN killin, p53-regulated DNA replication inhibitor 2 2
MIRT630847 ACACB acetyl-CoA carboxylase beta 2 2
MIRT631721 RNASEH2B ribonuclease H2 subunit B 2 2
MIRT632264 USP1 ubiquitin specific peptidase 1 2 4
MIRT632571 POLQ DNA polymerase theta 2 2
MIRT633992 SLC35E2 solute carrier family 35 member E2 2 2
MIRT635211 ZNF286A zinc finger protein 286A 2 4
MIRT635249 ELOVL6 ELOVL fatty acid elongase 6 2 4
MIRT635261 FBXL20 F-box and leucine rich repeat protein 20 2 2
MIRT635283 GK5 glycerol kinase 5 (putative) 2 2
MIRT635663 DTX3L deltex E3 ubiquitin ligase 3L 2 2
MIRT636251 SEC63 SEC63 homolog, protein translocation regulator 2 2
MIRT636564 EPB41 erythrocyte membrane protein band 4.1 2 2
MIRT636814 TBC1D24 TBC1 domain family member 24 2 2
MIRT637358 ZNF460 zinc finger protein 460 2 2
MIRT637473 DEFB105B defensin beta 105B 2 4
MIRT637505 DEFB105A defensin beta 105A 2 4
MIRT637861 SC5D sterol-C5-desaturase 2 2
MIRT638080 ZNF652 zinc finger protein 652 2 2
MIRT638096 ZBTB8A zinc finger and BTB domain containing 8A 2 2
MIRT638174 TMED4 transmembrane p24 trafficking protein 4 2 2
MIRT638201 TAF13 TATA-box binding protein associated factor 13 2 2
MIRT638278 SH2B3 SH2B adaptor protein 3 2 2
MIRT638714 FUT11 fucosyltransferase 11 2 2
MIRT638852 CLMP CXADR like membrane protein 2 2
MIRT639815 TMED8 transmembrane p24 trafficking protein family member 8 2 2
MIRT640879 ENTPD1 ectonucleoside triphosphate diphosphohydrolase 1 2 2
MIRT640937 FAM129A family with sequence similarity 129 member A 2 2
MIRT640971 ORAI2 ORAI calcium release-activated calcium modulator 2 2 2
MIRT641642 GNAZ G protein subunit alpha z 2 2
MIRT641931 SLC25A16 solute carrier family 25 member 16 2 2
MIRT642136 CRY2 cryptochrome circadian clock 2 2 2
MIRT643199 JAK3 Janus kinase 3 2 2
MIRT643256 ZNF566 zinc finger protein 566 2 2
MIRT643378 TRIM16L tripartite motif containing 16 like 2 2
MIRT643683 AMER3 APC membrane recruitment protein 3 2 2
MIRT643728 MCMDC2 minichromosome maintenance domain containing 2 2 2
MIRT643949 CCDC141 coiled-coil domain containing 141 2 2
MIRT644915 SERF1B small EDRK-rich factor 1B 2 2
MIRT645163 NOL9 nucleolar protein 9 2 2
MIRT645547 PABPC1L2B poly(A) binding protein cytoplasmic 1 like 2B 2 2
MIRT645550 PABPC1L2A poly(A) binding protein cytoplasmic 1 like 2A 2 2
MIRT645572 TACR2 tachykinin receptor 2 2 2
MIRT646697 SERF1A small EDRK-rich factor 1A 2 2
MIRT647806 FRMD8 FERM domain containing 8 2 2
MIRT647903 CIRH1A UTP4, small subunit processome component 2 2
MIRT648978 ACAD8 acyl-CoA dehydrogenase family member 8 2 2
MIRT649907 SLFN12L schlafen family member 12 like 2 2
MIRT650224 SIGLEC9 sialic acid binding Ig like lectin 9 2 4
MIRT651880 UGGT1 UDP-glucose glycoprotein glucosyltransferase 1 2 2
MIRT651935 UBN1 ubinuclein 1 2 2
MIRT652839 TACO1 translational activator of cytochrome c oxidase I 2 2
MIRT652994 SUGT1 SGT1 homolog, MIS12 kinetochore complex assembly cochaperone 2 2
MIRT654800 PRICKLE1 prickle planar cell polarity protein 1 2 2
MIRT655591 OTUD7B OTU deubiquitinase 7B 2 2
MIRT658760 EIF4EBP2 eukaryotic translation initiation factor 4E binding protein 2 2 2
MIRT659358 CRKL CRK like proto-oncogene, adaptor protein 2 2
MIRT660717 AMER1 APC membrane recruitment protein 1 2 2
MIRT660737 ALG14 ALG14, UDP-N-acetylglucosaminyltransferase subunit 2 2
MIRT661088 TMEM145 transmembrane protein 145 2 2
MIRT661176 S1PR2 sphingosine-1-phosphate receptor 2 2 2
MIRT662005 ZNF445 zinc finger protein 445 2 2
MIRT662178 KIAA1210 KIAA1210 2 2
MIRT662270 OR51E2 olfactory receptor family 51 subfamily E member 2 2 2
MIRT663046 SLC16A4 solute carrier family 16 member 4 2 2
MIRT663476 POFUT2 protein O-fucosyltransferase 2 2 2
MIRT664039 RPL27A ribosomal protein L27a 2 2
MIRT664096 ZDHHC24 zinc finger DHHC-type containing 24 2 2
MIRT664109 FUT1 fucosyltransferase 1 (H blood group) 2 2
MIRT664317 CD209 CD209 molecule 2 2
MIRT664455 BBS5 Bardet-Biedl syndrome 5 2 2
MIRT664595 HSD17B12 hydroxysteroid 17-beta dehydrogenase 12 2 4
MIRT664694 DBF4 DBF4 zinc finger 2 2
MIRT665162 SF3A1 splicing factor 3a subunit 1 2 2
MIRT665214 RBM22 RNA binding motif protein 22 2 2
MIRT665254 ZNF286B zinc finger protein 286B 2 2
MIRT665268 ZFP69B ZFP69 zinc finger protein B 2 2
MIRT665606 TTC39A tetratricopeptide repeat domain 39A 2 2
MIRT665830 TIMELESS timeless circadian clock 2 2
MIRT666201 SMARCC1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 1 2 2
MIRT666546 RNF115 ring finger protein 115 2 2
MIRT666602 REEP3 receptor accessory protein 3 2 2
MIRT666862 POU2F3 POU class 2 homeobox 3 2 4
MIRT666886 POLA2 DNA polymerase alpha 2, accessory subunit 2 2
MIRT667158 NRXN3 neurexin 3 2 2
MIRT667252 NEK9 NIMA related kinase 9 2 2
MIRT667419 MFSD2A major facilitator superfamily domain containing 2A 2 2
MIRT667434 METTL8 methyltransferase like 8 2 2
MIRT668023 HAUS3 HAUS augmin like complex subunit 3 2 2
MIRT668062 GPR75 G protein-coupled receptor 75 2 2
MIRT668070 GOSR1 golgi SNAP receptor complex member 1 2 2
MIRT668607 EHD4 EH domain containing 4 2 4
MIRT668694 DNAL1 dynein axonemal light chain 1 2 2
MIRT668782 DAAM1 dishevelled associated activator of morphogenesis 1 2 2
MIRT669037 CHEK1 checkpoint kinase 1 2 2
MIRT669044 CHAF1B chromatin assembly factor 1 subunit B 2 4
MIRT669156 CCNG1 cyclin G1 2 2
MIRT670090 ABCF3 ATP binding cassette subfamily F member 3 2 4
MIRT670206 SLC24A4 solute carrier family 24 member 4 2 2
MIRT672488 FUS FUS RNA binding protein 2 2
MIRT673830 SLC11A2 solute carrier family 11 member 2 2 2
MIRT675481 VEGFC vascular endothelial growth factor C 2 2
MIRT675634 HACE1 HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1 2 2
MIRT677913 HIST1H2BN histone cluster 1 H2B family member n 2 2
MIRT678420 ANKRD36 ankyrin repeat domain 36 2 2
MIRT678626 OLFML2A olfactomedin like 2A 2 2
MIRT678791 NUPL2 nucleoporin like 2 2 2
MIRT679561 LIN9 lin-9 DREAM MuvB core complex component 2 2
MIRT680743 CA5B carbonic anhydrase 5B 2 2
MIRT682481 LIX1L limb and CNS expressed 1 like 2 4
MIRT682701 PSMD9 proteasome 26S subunit, non-ATPase 9 2 2
MIRT682759 MDM2 MDM2 proto-oncogene 2 2
MIRT682811 TMCO1 transmembrane and coiled-coil domains 1 2 2
MIRT682847 DNAJC28 DnaJ heat shock protein family (Hsp40) member C28 2 2
MIRT682896 XIAP X-linked inhibitor of apoptosis 2 2
MIRT682916 FAM73A mitoguardin 1 2 2
MIRT682935 ZNF292 zinc finger protein 292 2 2
MIRT682953 RPL12 ribosomal protein L12 2 2
MIRT682972 NF2 neurofibromin 2 2 2
MIRT683033 SUSD5 sushi domain containing 5 2 2
MIRT683081 A1BG alpha-1-B glycoprotein 2 2
MIRT683105 TIMM10B translocase of inner mitochondrial membrane 10B 2 2
MIRT686640 TMEM184C transmembrane protein 184C 2 2
MIRT687444 NR3C1 nuclear receptor subfamily 3 group C member 1 2 2
MIRT688401 EMC8 ER membrane protein complex subunit 8 2 2
MIRT688886 C3orf70 chromosome 3 open reading frame 70 2 2
MIRT689148 IRAK1BP1 interleukin 1 receptor associated kinase 1 binding protein 1 2 2
MIRT689234 RPS19 ribosomal protein S19 2 2
MIRT689306 C5AR2 complement component 5a receptor 2 2 2
MIRT689364 ZNF101 zinc finger protein 101 2 2
MIRT689498 SCARF1 scavenger receptor class F member 1 2 2
MIRT689655 RBM23 RNA binding motif protein 23 2 2
MIRT689897 SOD2 superoxide dismutase 2 2 2
MIRT690150 PPIL6 peptidylprolyl isomerase like 6 2 2
MIRT690601 C17orf105 chromosome 17 open reading frame 105 2 2
MIRT690805 FAHD1 fumarylacetoacetate hydrolase domain containing 1 2 2
MIRT690946 GLG1 golgi glycoprotein 1 2 2
MIRT691388 ATP13A4 ATPase 13A4 2 2
MIRT691408 DNA2 DNA replication helicase/nuclease 2 2 2
MIRT692175 LRRC3C leucine rich repeat containing 3C 2 2
MIRT692235 ALDH1B1 aldehyde dehydrogenase 1 family member B1 2 2
MIRT693283 GINM1 glycoprotein integral membrane 1 2 2
MIRT693439 TPGS1 tubulin polyglutamylase complex subunit 1 2 2
MIRT693460 HIST1H2AG histone cluster 1 H2A family member g 2 2
MIRT693768 ZNF383 zinc finger protein 383 2 2
MIRT694018 PPIL4 peptidylprolyl isomerase like 4 2 2
MIRT694236 ZNF749 zinc finger protein 749 2 2
MIRT694321 NLRP9 NLR family pyrin domain containing 9 2 2
MIRT694347 CHST6 carbohydrate sulfotransferase 6 2 2
MIRT694430 MCF2L2 MCF.2 cell line derived transforming sequence-like 2 2 2
MIRT695763 WDR35 WD repeat domain 35 2 2
MIRT696167 TIPIN TIMELESS interacting protein 2 2
MIRT696417 DOCK7 dedicator of cytokinesis 7 2 2
MIRT696543 C3 complement C3 2 2
MIRT696998 CCDC80 coiled-coil domain containing 80 2 2
MIRT697232 ZYG11A zyg-11 family member A, cell cycle regulator 2 2
MIRT697806 UBXN2A UBX domain protein 2A 2 2
MIRT697944 TVP23C trans-golgi network vesicle protein 23 homolog C 2 2
MIRT698161 TNFRSF13C TNF receptor superfamily member 13C 2 2
MIRT698778 STK4 serine/threonine kinase 4 2 2
MIRT700259 RBM12B RNA binding motif protein 12B 2 2
MIRT700970 PDK3 pyruvate dehydrogenase kinase 3 2 2
MIRT701251 NUP35 nucleoporin 35 2 2
MIRT701607 MYPN myopalladin 2 2
MIRT702457 KIAA1467 family with sequence similarity 234 member B 2 2
MIRT702613 ITPRIPL2 inositol 1,4,5-trisphosphate receptor interacting protein like 2 2 2
MIRT702691 IRGQ immunity related GTPase Q 2 2
MIRT702934 HMX3 H6 family homeobox 3 2 2
MIRT702991 HERPUD2 HERPUD family member 2 2 2
MIRT703148 GPR137C G protein-coupled receptor 137C 2 2
MIRT703980 EMC1 ER membrane protein complex subunit 1 2 2
MIRT704569 CLPX caseinolytic mitochondrial matrix peptidase chaperone subunit 2 2
MIRT705065 C4orf32 family with sequence similarity 241 member A 2 2
MIRT705447 ATL2 atlastin GTPase 2 2 2
MIRT705856 AFF3 AF4/FMR2 family member 3 2 2
MIRT705886 ADIPOR2 adiponectin receptor 2 2 2
MIRT714370 HP1BP3 heterochromatin protein 1 binding protein 3 2 2
MIRT715784 PHF12 PHD finger protein 12 2 2
MIRT715864 KIAA0101 PCNA clamp associated factor 2 2
MIRT715947 NUP93 nucleoporin 93 2 2
MIRT716132 THOC5 THO complex 5 2 2
MIRT717084 EBF4 early B-cell factor 4 2 2
MIRT725424 HNRNPA3 heterogeneous nuclear ribonucleoprotein A3 2 2
MIRT736091 GREM1 gremlin 1, DAN family BMP antagonist 3 0
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-4793 Dabrafenib 44462760 NSC764134 approved sensitive cell line (A375)
hsa-miR-4793-3p Gefitinib 123631 NSC715055 approved sensitive cell line (HCC827)
hsa-miR-4793-3p Doxorubicin 31703 NSC123127 approved resistant cell line (BAS)
hsa-miR-4793-3p Osimertinib 71496458 NSC779217 approved sensitive cell line (H1975)

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