pre-miRNA Information
pre-miRNA hsa-mir-3192   
Genomic Coordinates chr20: 18470615 - 18470691
Description Homo sapiens miR-3192 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-3192-5p
Sequence 10| UCUGGGAGGUUGUAGCAGUGGAA |32
Evidence Experimental
Experiments Illumina
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs906254403 3 dbSNP
rs554130490 4 dbSNP
rs773140898 6 dbSNP
rs376614009 11 dbSNP
rs899297329 12 dbSNP
rs1330418015 18 dbSNP
rs1402597660 21 dbSNP
rs995052311 22 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol SHROOM3   
Synonyms APXL3, MSTP013, SHRM, ShrmL
Description shroom family member 3
Transcript NM_020859   
Expression
Putative miRNA Targets on SHROOM3
3'UTR of SHROOM3
(miRNA target sites are highlighted)
>SHROOM3|NM_020859|3'UTR
   1 CCTCTTCTAAAATACCCAACCAAAAGATCACTGTTTCTCTCAACACTATTTAATCTGAAAAATGTTTCAGTACAAACCAC
  81 TGTTTGAACTATCTGGGTTATTGGTGTTTGTTCCTGATGAAAGGAAAAAAATTCTCTCCAGGAGGAAGCCTTTTTCCTTC
 161 TTGCCCTTCCTGATTGATCTTCTGAGAGCTCGAATGCTGCTGGACACGTACCCCTTTCTATTATTACTTTGTAGTAGAAA
 241 GAAAGTTAATGAAACTGAGAACTGATTGGAGGGTGTTTGATCATTTAGTTTTTAACAGGCTGAGGCAACATGGATCAGTG
 321 TGTGTCCCCCTCAGGAATGTATCCACAGTGGCCTTCCTTGCTGGTGGGCAGTGTATCCTGATGGCAGGGTACAAGTACCA
 401 TTAATGAAGGGTCTGCAACATAAAGCCTTAAAAAGACACACACTAAGAAAACTGTAAAACCTTGAACATTGTTATTTATA
 481 TTTTTTAAAATGGAAAAGATCACTATGTTTGTTGTGCTAACCACTTATTTGATTCTGTTTTGTGGTGGACATAGATGATT
 561 ACGTTTGAGCTTTGTATTTTGTGAAAACCTTAATGAAATGAATTCCAAAGATAGTCACGTTGAGCGTGAAGACTTTTTTT
 641 CTTACATTCCTGTCTTATTTTTACCAACACGAGCAGGCATTCTGCGCTTCCACTGGACTGAGTATGGGGGAGTCCTGCTC
 721 CCCTCCTGTCTCACACCTTCCCCAGGAGGAAGGCCTCATGCACTGCGGTTATTGCATCATTTCCTAGTGCTTCATGTCAT
 801 TATCACTGGTGGGGAAACAAAGCTAAATTTTATTAACAAAGACAACTCTCAGACCTATATAATAGGAGGAGGACGTCCAG
 881 AATCCAACAAAATTCAAACGGAGCCCATGCTGTTCTCCTGAACAAGATTTGGGCTAAATACGGCCTGTTTATTGAGGCTG
 961 TTTTAATGATGCTTTAAAAAAAAAAAATGTTTTCTAAAATGTCAAACCTGTTGACCACACTTTGATTAAAAACTGCCTCC
1041 TTAACCTCTGAAGACTGATTTTGCTTTATCATGTTTCAATAATAACATTTCAGAGGTTACTCTGTAGCCCCAGTTGTAAG
1121 CTTATAAAAACAAACTGGAAGGCTGAGGAGGTTATGGGCTGGCAGCCAGGCTATGTTTACAGCTGCTGGAGATGGCAGTA
1201 GCCTTATACTTTGAGCAGGTAGTACATCCCAGGCTGTGCTAGAGGTAGATTTGTTTTTTCACGTTTGATCTGTGGCTGGT
1281 GGCCACCTTTGTTGATTTGGGCTTACGAGTTTCATAGTAGCCAGTCTTAGAAAATTGGGGGAGTAAAATTTTGAAGTAAA
1361 AAAAAAAAAAAAATGACAAGGGAACCAAATGCTCCTTCTCCCCTTAGTACATTTTCATTACTTAATGAAGTTTTATCTCC
1441 TATGTAAGAATATCAAAATTGTAGTTTGGGTCTCCAGTAGAGATGTCTTTTGATTAACTTATAAACAACTGGCCACCCAG
1521 AAGTTTCCTTTGCATAGTCAACCAAAGCTATGGCTTTGTTCTTTGGAGCTTATATACTGCATGACTCCATTGATACAAAT
1601 AAGACAGCACCTTGGTTTCCCAGGGATGTTTTCATTCAGAGGTCCTGTCTCCCAGGAAAGCAGTAGAACCAGTGACAGCA
1681 TTCAACAGCCACACTGCATGGTCATCAGTCTTAGGCCAACATGGGAGCCTGAAATTAACTCCATCAGTAACTACCTGTGT
1761 GTCTTGCTGATACTGAATGAGCCCTCACAAGCCAAGCCAGGTGGAAGACAGCCAGCAAACGTCTACAGTTATTCTTAGTG
1841 AAATTCCTCAGAGGAATCCAGGGGGCTCCCAGTTCCCAACACTCTTCGAGATGACCATTTTTCGGGATTTGACTGGGGAA
1921 CATTTTACATATTCAGTCTTTCTCAAAAATTTTTATTTATTTTCTTGAGAAAGGGTCTTACTATGTTGCCCAGGCTGGAG
2001 TGCAGAGTGGTGCGATAACAGCTCATTGCAGTCTGAACCTCTGAGGCTCAAGCCATCCTCCCATCTCAGCCTCCCAAGTA
2081 GCTGGGACCACAGGTGTGCACCACTATGCTTGGCTAATTTTTTGATTTTTTATAGAGACGGGGGTCTCGCTATGTTGCCC
2161 AGGCTGGTTTCAAACTCCTGGGCTCAAGGGATCCTTCCGCTTTGGTCCCAGAAGTGCTGGGATTACAGGCATGAGCCACT
2241 TCACCCAGCCACTTTTCTAATTTATAGACATAAAAGTAATTGACTCCCACAGCACAGTAACAGGCAATGCTGCTTGGCAT
2321 GCCACAAACATCTGAAAGCTTGTGACACTCCTAGGATTGTGTCCATTCTTTCATTATGTGGAAACTTTGTTCTGTTATGT
2401 GAAATGGGTAAGGCACCAAGTGAGACTTTGAAATCTAATTTTTAGGTGGATGTGATATTTATTGTAATAGGACTTGACCT
2481 CTGTACTTTAAAGAAATCACTAACCAAATTTTCAAAGTTTCCTTTTAAATGCGTTTAGCTAGAAATCTATGTATTTATCC
2561 CTTTCCTATTTTGCATTCTTCTCCCACTATTTTTAAAAACTCATTTACAGTAGAAACCATTCTTCTTTCTCCCAACAGTA
2641 TCCTTTGCCAAGACCATGAGAACAGTAAGGAGCATGTTGTTGGTCAGGGTTTCAGAATACGCGTGATGTCACTGAGAATG
2721 TTTGCTCACAGTCAATAATTGTCTTTGTGGATGTGATAATTTTGGAGATACACTTCTGGTCAGAACTCAGGTGAGATAAT
2801 CTTGCAATACTCCAAATGCAGATACTCCAGCCACCCGCAAGGTTCCAGGAAAGGACAATGTCCTGCGAGAAAATCAGGAG
2881 GCCTCCACTTCCTGGGCCACTTGAGAAGTTCCTGGGCATGTCACTACATGTTGGTTGACTCAGCCATTTCTCATGCTGTT
2961 TTGTTTCTTGCGGTGGCCACTTAACCCCAAAGAATGAAGGGAGGATCCACAGTGAAAGTGCCTGAGTTTCTCTATGAGAC
3041 CAGATGCTGTCGAAACCAAACATCTTTTCCTTTGCTCTATGGGAACATTTTAGGGTTTGTTTTGCACAGCTGGTTTCCAG
3121 ACTAGAAGATTAACAAGTTTGGGTCCACCCCTAAGAATCAGTGGCTGTCTTTTAAGGTGAGGAGTGTGGGCTTAACTGAG
3201 GTCCTTTGAGGGAGCTATAAAGGAGAAACAACCTGGGACATCCCAGTTTTCCTATTCCTCCACTGTTAATATCTCATCTA
3281 AAATAATTCATGAGTTTAAATGGTAAATATATGCTTTAAGCTCTACCTTTAAACTTGTATGTTATTCAGGCATCTCTTAT
3361 TAAGATACTGGGTCTCTGGATACCCAAGGAAATGTTGGCTTTTTATTCTTATGTGGTTCCAAATTTACTTCTCTTCAGTT
3441 TAATTGTCCATGGTAGTGCTGGCTTCATTGTTAGGTTGGAGTTATTATTTTCCTTTTAGAACAACATGAATTTTATTCAC
3521 CTTACTATTAGAAAAAGGAATAACTACAGCCAGAAATAACTTCATTTCCTACAAGGTATAAAAAGTGGTCAAGTGAATGT
3601 GAAGGGGCTTTTCTACACAGGAATATATTATCGGGAACAAAGTATTTCCTGCTGCCTTAACTCTTTGGGATGCATAGGAT
3681 AAAATGATAAAGACCATTTTAATATCAGAAAGGGTTGTCTTATTAATTTTTAAATAAAACTTCACATTTCTTAATGGGGA
3761 GCTCATTCAGAAACTAAATAATGGTTTCTCAAAGTGTGGTCAGGATACGATCTGCATCAGAATCCTTGGAATGCTTGTTA
3841 AAAATACCAATTGCTATGACAAAACCAAGTCTGCTGGAAACTGCATTTCAGCAGGTTTCCCATGTTATTCTGATGTATTT
3921 TAACATTTGAGAGCCACTACCAATCATCTGTACAGTTCCTACTGTTATGATCACAATAAGACTAACATGAATTTAATAAT
4001 CTGAATAATTTTTAAAATTTAAATAAACAGAAATTGAAGTTAAATTTAAAAATAAAAATAACCTCAGAAGTTGAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' aaGGUGACGAUGUUGGAGGGUCu 5'
            :||  | | | ::||||||| 
Target 5' atTCAGAGGTCCTGTCTCCCAGg 3'
1634 - 1656 153.00 -17.40
2
miRNA  3' aaGGUGACGAUGUUGGAGGGUcu 5'
            |||:  || ||:|||||||  
Target 5' tcCCAT--CT-CAGCCTCCCAag 3'
2059 - 2078 144.00 -21.20
3
miRNA  3' aaggUGACGAUGUUGGAGGGUCu 5'
              | | | : :: ||||||| 
Target 5' gaggAATCCAGGGGGCTCCCAGt 3'
1851 - 1873 143.00 -16.40
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN31522598 26 COSMIC
COSN30535544 27 COSMIC
COSN30476842 42 COSMIC
COSN30103672 69 COSMIC
COSN19706728 109 COSMIC
COSN31500632 117 COSMIC
COSN30498842 125 COSMIC
COSN31610263 132 COSMIC
COSN31589494 172 COSMIC
COSN30105604 221 COSMIC
COSN31522000 289 COSMIC
COSN7843453 329 COSMIC
COSN31627657 367 COSMIC
COSN26550759 465 COSMIC
COSN31481426 593 COSMIC
COSN31565680 626 COSMIC
COSN21674222 768 COSMIC
COSN23001909 885 COSMIC
COSN7843454 901 COSMIC
COSN9241836 977 COSMIC
COSN20100220 988 COSMIC
COSN27312834 988 COSMIC
COSN26710677 995 COSMIC
COSN6581853 1033 COSMIC
COSN20100221 1374 COSMIC
COSN27261435 1374 COSMIC
COSN29298590 2244 COSMIC
COSN24571494 2423 COSMIC
COSN28201705 2495 COSMIC
COSN14499066 2508 COSMIC
COSN2045033 2644 COSMIC
COSN26326285 2672 COSMIC
COSN9241837 2832 COSMIC
COSN21853350 2837 COSMIC
COSN22614197 2870 COSMIC
COSN15152605 3206 COSMIC
COSN5578070 3270 COSMIC
COSN7643906 3398 COSMIC
COSN25169001 3762 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1406885372 8 dbSNP
rs1433623122 13 dbSNP
rs374709838 17 dbSNP
rs768051786 17 dbSNP
rs1162663606 20 dbSNP
rs1178486414 21 dbSNP
rs775249058 22 dbSNP
rs199995590 23 dbSNP
rs369059945 24 dbSNP
rs774014745 29 dbSNP
rs906835966 31 dbSNP
rs1445139512 33 dbSNP
rs1316422797 34 dbSNP
rs1331266469 37 dbSNP
rs936983994 39 dbSNP
rs761343971 40 dbSNP
rs1359344562 41 dbSNP
rs1243120622 46 dbSNP
rs541539654 49 dbSNP
rs759848267 54 dbSNP
rs201236757 56 dbSNP
rs1246627458 58 dbSNP
rs3733241 67 dbSNP
rs1025576831 69 dbSNP
rs574052227 70 dbSNP
rs190744440 76 dbSNP
rs978247295 82 dbSNP
rs553639612 92 dbSNP
rs1224202161 94 dbSNP
rs573466721 98 dbSNP
rs1291657444 103 dbSNP
rs1444322750 107 dbSNP
rs985129042 114 dbSNP
rs910867466 115 dbSNP
rs143260730 117 dbSNP
rs1176790803 126 dbSNP
rs997684212 143 dbSNP
rs1422457957 147 dbSNP
rs1030546901 149 dbSNP
rs775876444 150 dbSNP
rs953663298 152 dbSNP
rs761152489 159 dbSNP
rs1456771433 166 dbSNP
rs1265161603 177 dbSNP
rs1211107585 192 dbSNP
rs1311630616 193 dbSNP
rs918421698 194 dbSNP
rs146698323 208 dbSNP
rs561528518 209 dbSNP
rs572195503 211 dbSNP
rs1408031826 214 dbSNP
rs764888737 224 dbSNP
rs942075975 228 dbSNP
rs1182306049 232 dbSNP
rs1249169634 233 dbSNP
rs543377890 243 dbSNP
rs1200548248 244 dbSNP
rs988262220 251 dbSNP
rs1055159234 253 dbSNP
rs895119455 256 dbSNP
rs1377780426 268 dbSNP
rs1438160010 272 dbSNP
rs750063357 285 dbSNP
rs967214273 292 dbSNP
rs563112806 293 dbSNP
rs1173351862 294 dbSNP
rs1218021245 295 dbSNP
rs1374206656 311 dbSNP
rs981308852 312 dbSNP
rs183279493 313 dbSNP
rs1354586324 317 dbSNP
rs902688251 328 dbSNP
rs999731908 330 dbSNP
rs140210103 335 dbSNP
rs1384658587 353 dbSNP
rs928535660 355 dbSNP
rs1395277847 366 dbSNP
rs1032919704 390 dbSNP
rs1432135922 402 dbSNP
rs1308766468 412 dbSNP
rs1051283652 421 dbSNP
rs1389954876 431 dbSNP
rs1303681156 436 dbSNP
rs1331837671 453 dbSNP
rs1233318069 454 dbSNP
rs985160778 463 dbSNP
rs1158523215 465 dbSNP
rs1418443604 472 dbSNP
rs1387679581 473 dbSNP
rs1055853949 488 dbSNP
rs548657007 500 dbSNP
rs1254329050 523 dbSNP
rs559167492 548 dbSNP
rs1188508737 549 dbSNP
rs1488623838 555 dbSNP
rs1262592435 557 dbSNP
rs756261277 563 dbSNP
rs941749844 564 dbSNP
rs1361460746 568 dbSNP
rs964977599 585 dbSNP
rs758226270 592 dbSNP
rs1319712340 599 dbSNP
rs1401489787 603 dbSNP
rs1036115222 613 dbSNP
rs897953887 619 dbSNP
rs918547011 620 dbSNP
rs997630579 625 dbSNP
rs1051919162 626 dbSNP
rs1267644463 627 dbSNP
rs1164408340 629 dbSNP
rs929881097 631 dbSNP
rs983995283 635 dbSNP
rs1478287534 641 dbSNP
rs528227116 645 dbSNP
rs1262786892 646 dbSNP
rs541310575 650 dbSNP
rs1490881458 651 dbSNP
rs1451941977 659 dbSNP
rs77688541 666 dbSNP
rs1032734856 669 dbSNP
rs1171725777 672 dbSNP
rs1487356448 674 dbSNP
rs751448569 680 dbSNP
rs1252888147 684 dbSNP
rs145389238 686 dbSNP
rs1460540228 687 dbSNP
rs1295314398 688 dbSNP
rs1224813613 689 dbSNP
rs1331182102 692 dbSNP
rs1324716429 701 dbSNP
rs1386726727 705 dbSNP
rs1391758937 706 dbSNP
rs1010034817 711 dbSNP
rs1323700820 734 dbSNP
rs942107102 741 dbSNP
rs1168806147 745 dbSNP
rs1481427538 754 dbSNP
rs149214454 756 dbSNP
rs1198035838 759 dbSNP
rs1294792010 760 dbSNP
rs1252641806 761 dbSNP
rs1199025316 763 dbSNP
rs916586878 767 dbSNP
rs970842600 768 dbSNP
rs150367360 772 dbSNP
rs71607379 774 dbSNP
rs567350247 775 dbSNP
rs981253172 795 dbSNP
rs1046821401 800 dbSNP
rs1265484482 814 dbSNP
rs1329829466 819 dbSNP
rs928479572 825 dbSNP
rs1312167873 829 dbSNP
rs1211425460 834 dbSNP
rs1447900266 837 dbSNP
rs534373209 840 dbSNP
rs1329504003 844 dbSNP
rs991437328 852 dbSNP
rs1053984726 856 dbSNP
rs550981075 858 dbSNP
rs1172048559 862 dbSNP
rs1382090611 864 dbSNP
rs1464659992 864 dbSNP
rs1179185159 867 dbSNP
rs908830958 871 dbSNP
rs754948826 875 dbSNP
rs781054350 876 dbSNP
rs868541436 886 dbSNP
rs1006599692 890 dbSNP
rs564187970 900 dbSNP
rs941712774 901 dbSNP
rs1036471734 904 dbSNP
rs1198214463 908 dbSNP
rs1352228327 909 dbSNP
rs919003395 914 dbSNP
rs1419450517 918 dbSNP
rs567538021 921 dbSNP
rs200358120 933 dbSNP
rs1051852385 939 dbSNP
rs1427214305 942 dbSNP
rs1167049285 943 dbSNP
rs889302065 944 dbSNP
rs189110701 947 dbSNP
rs553455053 958 dbSNP
rs141113966 960 dbSNP
rs1461172307 964 dbSNP
rs1412765155 976 dbSNP
rs1419054771 976 dbSNP
rs538058590 976 dbSNP
rs75581076 976 dbSNP
rs997903139 976 dbSNP
rs143408499 983 dbSNP
rs1164755866 987 dbSNP
rs539200978 989 dbSNP
rs894085564 991 dbSNP
rs1435577935 1016 dbSNP
rs779157726 1019 dbSNP
rs909736223 1021 dbSNP
rs1021399274 1040 dbSNP
rs1448178022 1040 dbSNP
rs562886456 1045 dbSNP
rs1215315798 1046 dbSNP
rs906601703 1063 dbSNP
rs559009738 1064 dbSNP
rs575918668 1071 dbSNP
rs772333908 1072 dbSNP
rs544560102 1080 dbSNP
rs1230383623 1081 dbSNP
rs1357503167 1086 dbSNP
rs1333519096 1097 dbSNP
rs114120635 1106 dbSNP
rs958528036 1107 dbSNP
rs1298849645 1133 dbSNP
rs949496836 1136 dbSNP
rs991781302 1151 dbSNP
rs935608759 1156 dbSNP
rs1412835579 1162 dbSNP
rs1161056849 1167 dbSNP
rs1054421572 1173 dbSNP
rs893985804 1186 dbSNP
rs1241857533 1187 dbSNP
rs1192286895 1188 dbSNP
rs1487060725 1195 dbSNP
rs1240797297 1196 dbSNP
rs1485203991 1197 dbSNP
rs1224446122 1200 dbSNP
rs573297006 1203 dbSNP
rs963662700 1220 dbSNP
rs192151438 1223 dbSNP
rs1474930898 1240 dbSNP
rs1320240644 1250 dbSNP
rs971737479 1259 dbSNP
rs184467415 1263 dbSNP
rs1338521326 1264 dbSNP
rs375082758 1264 dbSNP
rs900955315 1273 dbSNP
rs987184169 1274 dbSNP
rs558985845 1280 dbSNP
rs1453380039 1281 dbSNP
rs1343203750 1293 dbSNP
rs1467583084 1300 dbSNP
rs879520879 1308 dbSNP
rs1354675224 1315 dbSNP
rs1169524239 1318 dbSNP
rs1025322977 1319 dbSNP
rs951096693 1335 dbSNP
rs1289635149 1337 dbSNP
rs1478624334 1338 dbSNP
rs1246686065 1344 dbSNP
rs1350767259 1354 dbSNP
rs1005470313 1356 dbSNP
rs1258879196 1357 dbSNP
rs1198279974 1358 dbSNP
rs1316105432 1358 dbSNP
rs1366803236 1358 dbSNP
rs879231191 1358 dbSNP
rs1273074296 1359 dbSNP
rs1284075323 1362 dbSNP
rs1315498842 1372 dbSNP
rs1377384200 1374 dbSNP
rs943544708 1375 dbSNP
rs1463761638 1392 dbSNP
rs1360578075 1393 dbSNP
rs528289425 1399 dbSNP
rs531827575 1402 dbSNP
rs1413465464 1404 dbSNP
rs1425071119 1410 dbSNP
rs1192309928 1411 dbSNP
rs1441864098 1412 dbSNP
rs1239207780 1418 dbSNP
rs1485610511 1428 dbSNP
rs894041073 1437 dbSNP
rs945646460 1442 dbSNP
rs1258050651 1445 dbSNP
rs1210906499 1449 dbSNP
rs1311684538 1451 dbSNP
rs1278030690 1457 dbSNP
rs1042380885 1458 dbSNP
rs906549227 1465 dbSNP
rs1242255257 1471 dbSNP
rs1003587881 1503 dbSNP
rs765730774 1504 dbSNP
rs991359270 1514 dbSNP
rs895266606 1519 dbSNP
rs917066572 1520 dbSNP
rs1446559310 1523 dbSNP
rs1254042593 1527 dbSNP
rs1172274924 1537 dbSNP
rs564910285 1539 dbSNP
rs1381531706 1552 dbSNP
rs530870462 1559 dbSNP
rs1488937401 1562 dbSNP
rs1016533677 1563 dbSNP
rs963298425 1564 dbSNP
rs148350478 1575 dbSNP
rs7661695 1580 dbSNP
rs1482940401 1581 dbSNP
rs530074452 1585 dbSNP
rs114696949 1588 dbSNP
rs7687163 1590 dbSNP
rs1285292588 1591 dbSNP
rs989434687 1597 dbSNP
rs35985576 1610 dbSNP
rs987133550 1610 dbSNP
rs1323286435 1611 dbSNP
rs1312912902 1615 dbSNP
rs1227403735 1616 dbSNP
rs1353225439 1622 dbSNP
rs1299474803 1624 dbSNP
rs1400145324 1625 dbSNP
rs915536218 1635 dbSNP
rs1298128976 1643 dbSNP
rs527919508 1646 dbSNP
rs1354593900 1653 dbSNP
rs143253457 1674 dbSNP
rs191618431 1679 dbSNP
rs915406240 1682 dbSNP
rs945624249 1686 dbSNP
rs1042662805 1687 dbSNP
rs1262296329 1695 dbSNP
rs1237001991 1713 dbSNP
rs569340691 1722 dbSNP
rs886784561 1725 dbSNP
rs1005663864 1727 dbSNP
rs939324968 1733 dbSNP
rs546224123 1736 dbSNP
rs1279776498 1745 dbSNP
rs1218642821 1746 dbSNP
rs547978562 1756 dbSNP
rs1231415810 1759 dbSNP
rs1489565651 1771 dbSNP
rs1295435691 1772 dbSNP
rs1381055897 1775 dbSNP
rs1012824442 1783 dbSNP
rs1294464110 1786 dbSNP
rs1394223622 1792 dbSNP
rs1457769051 1804 dbSNP
rs1024155358 1810 dbSNP
rs1173095062 1811 dbSNP
rs571009376 1821 dbSNP
rs754649317 1822 dbSNP
rs1434817912 1824 dbSNP
rs1420055655 1829 dbSNP
rs1209022172 1832 dbSNP
rs1408888428 1843 dbSNP
rs1466976108 1850 dbSNP
rs982219194 1855 dbSNP
rs1198908559 1862 dbSNP
rs1316705944 1868 dbSNP
rs1037518415 1872 dbSNP
rs1351302591 1874 dbSNP
rs1234842235 1876 dbSNP
rs1333318780 1880 dbSNP
rs1302668200 1881 dbSNP
rs769852334 1882 dbSNP
rs1441160395 1888 dbSNP
rs956811699 1889 dbSNP
rs898997319 1894 dbSNP
rs993341197 1896 dbSNP
rs878891925 1897 dbSNP
rs372441177 1904 dbSNP
rs975613683 1905 dbSNP
rs954668225 1907 dbSNP
rs934118065 1918 dbSNP
rs762672206 1919 dbSNP
rs1179069457 1924 dbSNP
rs1457021825 1933 dbSNP
rs1017254713 1937 dbSNP
rs1272445659 1939 dbSNP
rs1248049326 1941 dbSNP
rs1201669053 1945 dbSNP
rs964462544 1950 dbSNP
rs1345116191 1951 dbSNP
rs1257036996 1952 dbSNP
rs989652642 1954 dbSNP
rs1038069128 1956 dbSNP
rs1346117278 1958 dbSNP
rs915371325 1961 dbSNP
rs1434536641 1962 dbSNP
rs1012856445 1966 dbSNP
rs1448062272 1969 dbSNP
rs1335397665 1974 dbSNP
rs967286611 1975 dbSNP
rs1397804524 1977 dbSNP
rs978288901 1980 dbSNP
rs1403030378 1983 dbSNP
rs1214092554 1988 dbSNP
rs1172893544 1992 dbSNP
rs1432751510 1992 dbSNP
rs1270930270 1994 dbSNP
rs1173760421 2007 dbSNP
rs1024601267 2008 dbSNP
rs1189206543 2012 dbSNP
rs928198637 2013 dbSNP
rs1453589826 2014 dbSNP
rs573313201 2015 dbSNP
rs1055115894 2024 dbSNP
rs1214536251 2026 dbSNP
rs1484962983 2027 dbSNP
rs184102966 2033 dbSNP
rs1241248596 2034 dbSNP
rs1350431558 2035 dbSNP
rs1277955024 2036 dbSNP
rs1247300273 2039 dbSNP
rs1252213020 2040 dbSNP
rs1341340380 2044 dbSNP
rs1312330135 2047 dbSNP
rs941415533 2053 dbSNP
rs1038869704 2054 dbSNP
rs879005939 2054 dbSNP
rs1242667847 2056 dbSNP
rs879252871 2059 dbSNP
rs1475027047 2069 dbSNP
rs1399838481 2076 dbSNP
rs188838933 2089 dbSNP
rs1164596127 2092 dbSNP
rs1472902411 2094 dbSNP
rs10031788 2097 dbSNP
rs544761810 2100 dbSNP
rs1163767121 2106 dbSNP
rs1391759698 2107 dbSNP
rs1265908739 2114 dbSNP
rs1218020832 2118 dbSNP
rs754822942 2125 dbSNP
rs890361426 2140 dbSNP
rs181594901 2141 dbSNP
rs530617514 2143 dbSNP
rs544503126 2145 dbSNP
rs1327569875 2147 dbSNP
rs1022271683 2149 dbSNP
rs1017245618 2150 dbSNP
rs1278709991 2164 dbSNP
rs1268545383 2173 dbSNP
rs4859715 2181 dbSNP
rs975644781 2184 dbSNP
rs867821835 2188 dbSNP
rs922878846 2191 dbSNP
rs1233901075 2198 dbSNP
rs1272798273 2199 dbSNP
rs1162370300 2204 dbSNP
rs1332908425 2208 dbSNP
rs1423758039 2212 dbSNP
rs955646263 2215 dbSNP
rs1475361843 2219 dbSNP
rs530138828 2227 dbSNP
rs1010619256 2228 dbSNP
rs1240927424 2232 dbSNP
rs1201454601 2236 dbSNP
rs1469191841 2238 dbSNP
rs1022453841 2243 dbSNP
rs1031756305 2244 dbSNP
rs1212079895 2246 dbSNP
rs1320038751 2253 dbSNP
rs35665513 2257 dbSNP
rs1258754893 2259 dbSNP
rs547044803 2265 dbSNP
rs1446421847 2271 dbSNP
rs1214108232 2278 dbSNP
rs566852878 2291 dbSNP
rs1190932093 2304 dbSNP
rs532677968 2308 dbSNP
rs1359762707 2320 dbSNP
rs908696488 2322 dbSNP
rs1436865035 2325 dbSNP
rs1475257495 2326 dbSNP
rs552385629 2333 dbSNP
rs1323435405 2334 dbSNP
rs960918210 2337 dbSNP
rs114125115 2360 dbSNP
rs948332526 2365 dbSNP
rs916552421 2369 dbSNP
rs535154731 2408 dbSNP
rs1174839747 2415 dbSNP
rs1458458189 2417 dbSNP
rs907139554 2423 dbSNP
rs555085863 2426 dbSNP
rs1459240769 2428 dbSNP
rs1386115500 2451 dbSNP
rs1233721825 2456 dbSNP
rs1400701080 2456 dbSNP
rs1203905966 2468 dbSNP
rs1305852973 2469 dbSNP
rs918650151 2476 dbSNP
rs1219773131 2482 dbSNP
rs1347116535 2487 dbSNP
rs1300959665 2490 dbSNP
rs778839339 2505 dbSNP
rs998772087 2514 dbSNP
rs1047527275 2527 dbSNP
rs1297253187 2531 dbSNP
rs1053378019 2533 dbSNP
rs1415496301 2534 dbSNP
rs1178814468 2544 dbSNP
rs548489426 2548 dbSNP
rs1395062937 2549 dbSNP
rs1172148527 2550 dbSNP
rs1442003787 2560 dbSNP
rs1408915491 2564 dbSNP
rs1292718451 2577 dbSNP
rs1176863035 2585 dbSNP
rs568389300 2599 dbSNP
rs1039368482 2602 dbSNP
rs900447689 2605 dbSNP
rs1010985462 2612 dbSNP
rs1241440594 2613 dbSNP
rs1211754410 2620 dbSNP
rs534202438 2623 dbSNP
rs1021984758 2638 dbSNP
rs552584890 2643 dbSNP
rs1203099749 2648 dbSNP
rs866987953 2652 dbSNP
rs1282413706 2656 dbSNP
rs902249256 2657 dbSNP
rs1317307851 2659 dbSNP
rs1022304384 2670 dbSNP
rs1221742382 2676 dbSNP
rs964088544 2679 dbSNP
rs999288739 2684 dbSNP
rs1485934198 2701 dbSNP
rs1209578905 2702 dbSNP
rs572496657 2703 dbSNP
rs960873959 2704 dbSNP
rs758615666 2706 dbSNP
rs1029645293 2709 dbSNP
rs1417537676 2712 dbSNP
rs1416306980 2715 dbSNP
rs1188745581 2720 dbSNP
rs1474925390 2736 dbSNP
rs1255242094 2740 dbSNP
rs955843629 2743 dbSNP
rs1486047440 2755 dbSNP
rs538773485 2766 dbSNP
rs1182073101 2774 dbSNP
rs1213443354 2798 dbSNP
rs1362786440 2805 dbSNP
rs983023401 2808 dbSNP
rs908721013 2809 dbSNP
rs962829984 2828 dbSNP
rs1024305035 2830 dbSNP
rs558322850 2832 dbSNP
rs1377842051 2834 dbSNP
rs1386375318 2838 dbSNP
rs1288646435 2839 dbSNP
rs147051470 2842 dbSNP
rs918610604 2846 dbSNP
rs1165946029 2854 dbSNP
rs930040928 2855 dbSNP
rs986846892 2857 dbSNP
rs1195979437 2860 dbSNP
rs1429022534 2866 dbSNP
rs572117761 2867 dbSNP
rs1393146229 2868 dbSNP
rs1489342530 2876 dbSNP
rs1273360639 2879 dbSNP
rs944533245 2880 dbSNP
rs1045839648 2894 dbSNP
rs747317656 2899 dbSNP
rs1307994994 2901 dbSNP
rs1259404420 2903 dbSNP
rs1227593154 2907 dbSNP
rs1335348580 2916 dbSNP
rs1236656534 2926 dbSNP
rs1380831046 2944 dbSNP
rs540825255 2951 dbSNP
rs1326777750 2954 dbSNP
rs561041753 2972 dbSNP
rs1392609800 2973 dbSNP
rs1053002808 2987 dbSNP
rs575651076 2988 dbSNP
rs1372364574 2990 dbSNP
rs1233456728 2991 dbSNP
rs1434648436 3013 dbSNP
rs1253363276 3014 dbSNP
rs1192828983 3019 dbSNP
rs892981548 3019 dbSNP
rs1277657768 3023 dbSNP
rs1011400051 3027 dbSNP
rs1195806472 3040 dbSNP
rs1338200833 3041 dbSNP
rs1195808567 3049 dbSNP
rs1038839849 3052 dbSNP
rs574820190 3053 dbSNP
rs996926598 3062 dbSNP
rs1030089445 3071 dbSNP
rs1249406804 3077 dbSNP
rs1331136067 3081 dbSNP
rs955375501 3082 dbSNP
rs1004872813 3083 dbSNP
rs946683605 3085 dbSNP
rs962946131 3088 dbSNP
rs545991403 3095 dbSNP
rs1395677343 3097 dbSNP
rs1043756982 3099 dbSNP
rs55650799 3103 dbSNP
rs1452349502 3106 dbSNP
rs969809939 3111 dbSNP
rs1455139554 3112 dbSNP
rs560516300 3115 dbSNP
rs748571402 3116 dbSNP
rs770381161 3118 dbSNP
rs1034759938 3124 dbSNP
rs1281749808 3132 dbSNP
rs1233939638 3138 dbSNP
rs1346182883 3144 dbSNP
rs1298781348 3147 dbSNP
rs1396096104 3148 dbSNP
rs896277637 3158 dbSNP
rs981193124 3159 dbSNP
rs1335451526 3160 dbSNP
rs1012812046 3162 dbSNP
rs1023836157 3163 dbSNP
rs928292899 3190 dbSNP
rs963260873 3197 dbSNP
rs1416773800 3205 dbSNP
rs373200904 3206 dbSNP
rs1389866474 3217 dbSNP
rs1312218375 3220 dbSNP
rs974372476 3222 dbSNP
rs988876557 3233 dbSNP
rs1025559233 3244 dbSNP
rs951389892 3251 dbSNP
rs772835009 3255 dbSNP
rs1158968531 3263 dbSNP
rs1469286122 3267 dbSNP
rs1361757958 3274 dbSNP
rs1189010128 3284 dbSNP
rs577827324 3285 dbSNP
rs1258759928 3288 dbSNP
rs912642957 3291 dbSNP
rs543774825 3298 dbSNP
rs942810621 3298 dbSNP
rs1301170773 3300 dbSNP
rs1309130633 3303 dbSNP
rs1227556507 3304 dbSNP
rs974967071 3309 dbSNP
rs532354134 3311 dbSNP
rs946602223 3323 dbSNP
rs775811491 3324 dbSNP
rs1038871236 3328 dbSNP
rs1259190961 3331 dbSNP
rs1337108971 3332 dbSNP
rs1356204719 3338 dbSNP
rs1215173154 3341 dbSNP
rs1412823197 3349 dbSNP
rs1328177767 3353 dbSNP
rs1318707258 3354 dbSNP
rs1043657821 3362 dbSNP
rs552648419 3365 dbSNP
rs900315423 3366 dbSNP
rs1385297110 3368 dbSNP
rs923888503 3378 dbSNP
rs1382237488 3388 dbSNP
rs1166662946 3393 dbSNP
rs112979508 3399 dbSNP
rs1416565384 3400 dbSNP
rs1354873234 3408 dbSNP
rs1056167098 3413 dbSNP
rs896225558 3437 dbSNP
rs1472089365 3438 dbSNP
rs1244398748 3443 dbSNP
rs1012012633 3445 dbSNP
rs1194262618 3449 dbSNP
rs1446802754 3453 dbSNP
rs1282368799 3454 dbSNP
rs1335783943 3463 dbSNP
rs1193348084 3464 dbSNP
rs1045621072 3467 dbSNP
rs1231589798 3469 dbSNP
rs1051145509 3476 dbSNP
rs1265922281 3477 dbSNP
rs1430782603 3482 dbSNP
rs891127106 3482 dbSNP
rs898668721 3486 dbSNP
rs1327451129 3489 dbSNP
rs1004249393 3502 dbSNP
rs1171279940 3506 dbSNP
rs1393350967 3511 dbSNP
rs185396593 3523 dbSNP
rs1025842273 3526 dbSNP
rs1422200355 3528 dbSNP
rs951669769 3530 dbSNP
rs34580131 3532 dbSNP
rs1169025824 3533 dbSNP
rs878956648 3535 dbSNP
rs1464320083 3537 dbSNP
rs1008162659 3541 dbSNP
rs1195944833 3565 dbSNP
rs1395420774 3575 dbSNP
rs1469063319 3575 dbSNP
rs1019601371 3580 dbSNP
rs1439923301 3584 dbSNP
rs964445146 3585 dbSNP
rs975541999 3588 dbSNP
rs1439645231 3594 dbSNP
rs1273569228 3596 dbSNP
rs921720938 3602 dbSNP
rs1337412569 3623 dbSNP
rs1305343844 3624 dbSNP
rs1234839058 3628 dbSNP
rs967899842 3633 dbSNP
rs548405172 3634 dbSNP
rs1443686054 3650 dbSNP
rs1023159874 3657 dbSNP
rs1294316952 3667 dbSNP
rs1324177152 3676 dbSNP
rs979298728 3679 dbSNP
rs1175908021 3686 dbSNP
rs1394640776 3689 dbSNP
rs970212230 3689 dbSNP
rs568303318 3690 dbSNP
rs1273456931 3695 dbSNP
rs923836340 3697 dbSNP
rs1213506468 3711 dbSNP
rs1203975248 3715 dbSNP
rs935265540 3716 dbSNP
rs1487169041 3718 dbSNP
rs562849628 3724 dbSNP
rs1282389319 3726 dbSNP
rs747270523 3735 dbSNP
rs1056115790 3740 dbSNP
rs1225085634 3745 dbSNP
rs914224762 3747 dbSNP
rs534262498 3756 dbSNP
rs1418886673 3763 dbSNP
rs1439471986 3776 dbSNP
rs974608437 3785 dbSNP
rs1315368945 3790 dbSNP
rs921768672 3791 dbSNP
rs947757874 3792 dbSNP
rs1044830687 3795 dbSNP
rs933132458 3800 dbSNP
rs143806244 3809 dbSNP
rs531786948 3810 dbSNP
rs995685686 3812 dbSNP
rs1259468424 3815 dbSNP
rs1288231755 3816 dbSNP
rs1485328343 3826 dbSNP
rs1047242027 3834 dbSNP
rs1254007005 3835 dbSNP
rs1037050446 3838 dbSNP
rs766059099 3847 dbSNP
rs1416126081 3848 dbSNP
rs1293338963 3849 dbSNP
rs774157776 3851 dbSNP
rs1356836823 3854 dbSNP
rs1295608458 3858 dbSNP
rs1354484688 3871 dbSNP
rs72276450 3886 dbSNP
rs1008445739 3896 dbSNP
rs1019549231 3915 dbSNP
rs964080415 3939 dbSNP
rs1355436934 3942 dbSNP
rs997289776 3943 dbSNP
rs564404852 3944 dbSNP
rs1319106647 3950 dbSNP
rs190641139 3954 dbSNP
rs1260675389 3956 dbSNP
rs1036247965 3966 dbSNP
rs1420079208 3968 dbSNP
rs1487571004 3968 dbSNP
rs979247703 3969 dbSNP
rs1474834609 3972 dbSNP
rs1022657751 3983 dbSNP
rs150618352 3986 dbSNP
rs968313940 3989 dbSNP
rs1241106569 3990 dbSNP
rs1475042867 4002 dbSNP
rs974637851 4004 dbSNP
rs1336544714 4009 dbSNP
rs1273246381 4010 dbSNP
rs768854714 4020 dbSNP
rs1321573383 4021 dbSNP
rs954783139 4025 dbSNP
rs1384228268 4029 dbSNP
rs1410369104 4031 dbSNP
rs1419478187 4035 dbSNP
rs1288701070 4039 dbSNP
rs987351953 4040 dbSNP
rs1397037084 4049 dbSNP
rs956586997 4052 dbSNP
rs1460986891 4053 dbSNP
rs1366580735 4054 dbSNP
rs1353575995 4060 dbSNP
rs575271836 4060 dbSNP
rs1428849976 4063 dbSNP
rs1418488881 4066 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HEK293S
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in GSM1084064. RNA binding protein: AGO2. Condition:CLIP_noemetine_AbnovaAb HITS-CLIP data was present in GSM1084065. RNA binding protein: AGO2. Condition:CLIP_emetine_AbnovaAb HITS-CLIP data was present in GSM1084068. RNA binding protein: AGO2. Condition:CLIP_noemetine_SigmaAb HITS-CLIP data was present in GSM1084078. RNA binding protein: AGO2. Condition:CLIP_nohippuristanol_rep2_AbnovaAb ...

- Karginov FV; Hannon GJ, 2013, Genes & development.

Article - Karginov FV; Hannon GJ
- Genes & development, 2013
When adapting to environmental stress, cells attenuate and reprogram their translational output. In part, these altered translation profiles are established through changes in the interactions between RNA-binding proteins and mRNAs. The Argonaute 2 (Ago2)/microRNA (miRNA) machinery has been shown to participate in stress-induced translational up-regulation of a particular mRNA, CAT-1; however, a detailed, transcriptome-wide understanding of the involvement of Ago2 in the process has been lacking. Here, we profiled the overall changes in Ago2-mRNA interactions upon arsenite stress by cross-linking immunoprecipitation (CLIP) followed by high-throughput sequencing (CLIP-seq). Ago2 displayed a significant remodeling of its transcript occupancy, with the majority of 3' untranslated region (UTR) and coding sequence (CDS) sites exhibiting stronger interaction. Interestingly, target sites that were destined for release from Ago2 upon stress were depleted in miRNA complementarity signatures, suggesting an alternative mode of interaction. To compare the changes in Ago2-binding patterns across transcripts with changes in their translational states, we measured mRNA profiles on ribosome/polysome gradients by RNA sequencing (RNA-seq). Increased Ago2 occupancy correlated with stronger repression of translation for those mRNAs, as evidenced by a shift toward lighter gradient fractions upon stress, while release of Ago2 was associated with the limited number of transcripts that remained translated. Taken together, these data point to a role for Ago2 and the mammalian miRNAs in mediating the translational component of the stress response.
LinkOut: [PMID: 23824327]
CLIP-seq Support 1 for dataset GSM1084064
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_noemetine_AbnovaAb
Location of target site ENST00000296043.6 | 3UTR | CCCAGAAGUGCUGGGAUUACAGGCAU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM1084065
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_emetine_AbnovaAb
Location of target site ENST00000296043.6 | 3UTR | CCCAGAAGUGCUGGGAUUACAGGCAU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
CLIP-seq Support 3 for dataset GSM1084068
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_noemetine_SigmaAb
Location of target site ENST00000296043.6 | 3UTR | CCCAGAAGUGCUGGGAUUAC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
CLIP-seq Support 4 for dataset GSM1084078
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_nohippuristanol_rep2_AbnovaAb
Location of target site ENST00000296043.6 | 3UTR | CCCAGAAGUGCUGGGAUUACAGGC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
Click to see details
Click to see details
HNSC 1 0.5 1.000 0.5 3 Click to see details
HNSC 1 0.5 1.000 0.5 3 Click to see details
HNSC 1 0.5 1.000 0.5 3 Click to see details
HNSC 1 0.5 1.000 0.5 3 Click to see details
HNSC 1 0.5 1.000 0.5 3 Click to see details
HNSC 1 0.5 1.000 0.5 3 Click to see details
HNSC 1 0.5 1.000 0.5 3 Click to see details
167 hsa-miR-3192-5p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT058548 CTTNBP2NL CTTNBP2 N-terminal like 2 2
MIRT139892 BTF3L4 basic transcription factor 3 like 4 2 6
MIRT207395 MAT2A methionine adenosyltransferase 2A 2 6
MIRT294640 ZNF548 zinc finger protein 548 2 2
MIRT324251 GAPVD1 GTPase activating protein and VPS9 domains 1 2 2
MIRT441475 BEST3 bestrophin 3 2 2
MIRT445233 SRGAP2 SLIT-ROBO Rho GTPase activating protein 2 2 2
MIRT446763 ZNF491 zinc finger protein 491 2 2
MIRT451003 EPS15L1 epidermal growth factor receptor pathway substrate 15 like 1 2 2
MIRT452436 QDPR quinoid dihydropteridine reductase 2 2
MIRT452582 ZFP69B ZFP69 zinc finger protein B 2 2
MIRT452950 DISC1 disrupted in schizophrenia 1 2 2
MIRT453309 ZNF394 zinc finger protein 394 2 2
MIRT453810 KBTBD12 kelch repeat and BTB domain containing 12 2 2
MIRT454101 TMEM209 transmembrane protein 209 2 2
MIRT456228 LIX1L limb and CNS expressed 1 like 2 4
MIRT456738 TMEM239 transmembrane protein 239 2 2
MIRT456806 SIGLEC14 sialic acid binding Ig like lectin 14 2 4
MIRT457499 SLC35F6 solute carrier family 35 member F6 2 2
MIRT458037 MRPL12 mitochondrial ribosomal protein L12 2 2
MIRT459041 ZNF490 zinc finger protein 490 2 2
MIRT459135 FADS6 fatty acid desaturase 6 2 2
MIRT460126 CXCL16 C-X-C motif chemokine ligand 16 2 2
MIRT460506 FAM105A family with sequence similarity 105 member A 2 6
MIRT460944 NOA1 nitric oxide associated 1 2 4
MIRT461101 OPA3 OPA3, outer mitochondrial membrane lipid metabolism regulator 2 2
MIRT462641 PHF5A PHD finger protein 5A 2 2
MIRT463584 ZBTB38 zinc finger and BTB domain containing 38 2 2
MIRT466567 TBL1XR1 transducin beta like 1 X-linked receptor 1 2 2
MIRT467090 SRRD SRR1 domain containing 2 2
MIRT471093 PIK3C2B phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 beta 2 2
MIRT472596 NACC1 nucleus accumbens associated 1 2 2
MIRT473084 MORN4 MORN repeat containing 4 2 2
MIRT475977 GTPBP2 GTP binding protein 2 2 2
MIRT477054 FAM210A family with sequence similarity 210 member A 2 2
MIRT478303 DDX19A DEAD-box helicase 19A 2 4
MIRT478489 CYP20A1 cytochrome P450 family 20 subfamily A member 1 2 2
MIRT478500 CYP1B1 cytochrome P450 family 1 subfamily B member 1 2 2
MIRT478858 CRISPLD2 cysteine rich secretory protein LCCL domain containing 2 2 2
MIRT479096 CNNM4 cyclin and CBS domain divalent metal cation transport mediator 4 2 2
MIRT479180 CLSPN claspin 2 2
MIRT479215 CLCC1 chloride channel CLIC like 1 2 2
MIRT481176 AVL9 AVL9 cell migration associated 2 6
MIRT483032 KHSRP KH-type splicing regulatory protein 2 4
MIRT485150 RASL10B RAS like family 10 member B 2 2
MIRT486104 SLC7A5 solute carrier family 7 member 5 2 4
MIRT486319 SIPA1 signal-induced proliferation-associated 1 2 2
MIRT489443 IFNLR1 interferon lambda receptor 1 2 2
MIRT489585 SSBP2 single stranded DNA binding protein 2 2 2
MIRT489702 SCAMP4 secretory carrier membrane protein 4 2 2
MIRT490184 TMEM63C transmembrane protein 63C 2 2
MIRT491211 MLLT1 MLLT1, super elongation complex subunit 2 4
MIRT491276 DHX40 DEAH-box helicase 40 2 2
MIRT495162 CNGA2 cyclic nucleotide gated channel alpha 2 2 4
MIRT495222 DSCR3 DSCR3 arrestin fold containing 2 2
MIRT496820 CHRNB2 cholinergic receptor nicotinic beta 2 subunit 2 2
MIRT498602 KRT8 keratin 8 2 2
MIRT500003 HIST1H2BD histone cluster 1 H2B family member d 2 4
MIRT502065 KRAS KRAS proto-oncogene, GTPase 2 2
MIRT508197 SLC35E1 solute carrier family 35 member E1 2 2
MIRT508477 FAM71F2 family with sequence similarity 71 member F2 2 2
MIRT509635 RRP7A ribosomal RNA processing 7 homolog A 2 4
MIRT511039 NRF1 nuclear respiratory factor 1 2 2
MIRT516684 ZNF860 zinc finger protein 860 2 4
MIRT518394 ZNF250 zinc finger protein 250 2 2
MIRT518907 CDC14B cell division cycle 14B 2 2
MIRT520502 TRAM2 translocation associated membrane protein 2 2 6
MIRT521459 RAD51 RAD51 recombinase 2 2
MIRT522354 NCKIPSD NCK interacting protein with SH3 domain 2 4
MIRT522594 MAPK1IP1L mitogen-activated protein kinase 1 interacting protein 1 like 2 2
MIRT523267 HIST1H2AE histone cluster 1 H2A family member e 2 2
MIRT523532 GLUL glutamate-ammonia ligase 2 4
MIRT524186 DFFA DNA fragmentation factor subunit alpha 2 2
MIRT526842 PHC1 polyhomeotic homolog 1 2 2
MIRT528729 FAM26E calcium homeostasis modulator family member 5 2 2
MIRT540695 BMP3 bone morphogenetic protein 3 2 2
MIRT544483 TRIM4 tripartite motif containing 4 2 2
MIRT551566 LETM1 leucine zipper and EF-hand containing transmembrane protein 1 2 2
MIRT563619 ZNF277 zinc finger protein 277 2 2
MIRT564467 SLC35E2 solute carrier family 35 member E2 2 2
MIRT565031 VAV2 vav guanine nucleotide exchange factor 2 2 2
MIRT570294 ARPC3 actin related protein 2/3 complex subunit 3 2 2
MIRT572932 VDAC2 voltage dependent anion channel 2 2 2
MIRT573501 IQSEC3 IQ motif and Sec7 domain 3 2 2
MIRT573675 HES6 hes family bHLH transcription factor 6 2 2
MIRT609619 TRPC4AP transient receptor potential cation channel subfamily C member 4 associated protein 2 2
MIRT611966 PKD1 polycystin 1, transient receptor potential channel interacting 2 2
MIRT613930 HIVEP3 human immunodeficiency virus type I enhancer binding protein 3 2 2
MIRT617733 ATCAY ATCAY, caytaxin 2 4
MIRT618878 MBL2 mannose binding lectin 2 2 2
MIRT627590 SHROOM3 shroom family member 3 2 2
MIRT628516 ZNF878 zinc finger protein 878 2 2
MIRT633964 GRWD1 glutamate rich WD repeat containing 1 2 2
MIRT634530 NEGR1 neuronal growth regulator 1 2 2
MIRT635455 APOLD1 apolipoprotein L domain containing 1 2 2
MIRT636412 MTHFD2 methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase 2 2
MIRT639672 PPEF2 protein phosphatase with EF-hand domain 2 2 6
MIRT642667 RGS6 regulator of G protein signaling 6 2 2
MIRT644080 A4GALT alpha 1,4-galactosyltransferase (P blood group) 2 2
MIRT647318 RPH3AL rabphilin 3A like (without C2 domains) 2 2
MIRT647942 RNF152 ring finger protein 152 2 2
MIRT648687 AP1M1 adaptor related protein complex 1 mu 1 subunit 2 2
MIRT648817 ZNF689 zinc finger protein 689 2 2
MIRT650347 TREM1 triggering receptor expressed on myeloid cells 1 2 2
MIRT650374 MOCS3 molybdenum cofactor synthesis 3 2 4
MIRT655935 NDUFA4P1 NDUFA4, mitochondrial complex associated pseudogene 1 2 2
MIRT663778 PEX26 peroxisomal biogenesis factor 26 2 2
MIRT664297 HINT1 histidine triad nucleotide binding protein 1 2 2
MIRT665842 TIAL1 TIA1 cytotoxic granule associated RNA binding protein like 1 2 2
MIRT668929 COL9A2 collagen type IX alpha 2 chain 2 2
MIRT669673 ACAP2 ArfGAP with coiled-coil, ankyrin repeat and PH domains 2 2 2
MIRT669907 KIAA0754 KIAA0754 2 4
MIRT670248 TRIM13 tripartite motif containing 13 2 2
MIRT670368 ULBP3 UL16 binding protein 3 2 4
MIRT670642 BVES blood vessel epicardial substance 2 2
MIRT670749 HOOK3 hook microtubule tethering protein 3 2 2
MIRT671184 ZNF891 zinc finger protein 891 2 2
MIRT673946 ZNF500 zinc finger protein 500 2 2
MIRT674682 PLCE1 phospholipase C epsilon 1 2 2
MIRT677912 HIST1H2BN histone cluster 1 H2B family member n 2 2
MIRT678876 FAM118A family with sequence similarity 118 member A 2 2
MIRT679528 RAB36 RAB36, member RAS oncogene family 2 2
MIRT680589 ZNF573 zinc finger protein 573 2 2
MIRT680650 KIAA1456 KIAA1456 2 2
MIRT681149 INTS7 integrator complex subunit 7 2 2
MIRT681177 IBA57 IBA57 homolog, iron-sulfur cluster assembly 2 2
MIRT681234 DUSP19 dual specificity phosphatase 19 2 2
MIRT681626 F2RL2 coagulation factor II thrombin receptor like 2 2 2
MIRT681643 SCRG1 stimulator of chondrogenesis 1 2 2
MIRT681926 KAT7 lysine acetyltransferase 7 2 2
MIRT682050 MRPS10 mitochondrial ribosomal protein S10 2 2
MIRT682156 SMS spermine synthase 2 2
MIRT683555 HAVCR1 hepatitis A virus cellular receptor 1 2 2
MIRT684304 TRUB2 TruB pseudouridine synthase family member 2 2 2
MIRT684458 MFSD4 major facilitator superfamily domain containing 4A 2 2
MIRT685986 CCDC77 coiled-coil domain containing 77 2 2
MIRT686782 AZF1 azoospermia factor 1 2 2
MIRT687329 OSMR oncostatin M receptor 2 2
MIRT687629 LRIG2 leucine rich repeats and immunoglobulin like domains 2 2 2
MIRT688792 CCNB1 cyclin B1 2 2
MIRT689756 PRR13 proline rich 13 2 2
MIRT690823 SGSM2 small G protein signaling modulator 2 2 2
MIRT691310 ZNF681 zinc finger protein 681 2 2
MIRT692676 ZMYM1 zinc finger MYM-type containing 1 2 2
MIRT693508 MOB3A MOB kinase activator 3A 2 2
MIRT694657 C14orf119 chromosome 14 open reading frame 119 2 2
MIRT694889 ZNF417 zinc finger protein 417 2 2
MIRT695740 ZNF117 zinc finger protein 117 2 2
MIRT697101 GPKOW G-patch domain and KOW motifs 2 2
MIRT698968 SPAST spastin 2 2
MIRT700379 RAB33B RAB33B, member RAS oncogene family 2 2
MIRT703930 EPG5 ectopic P-granules autophagy protein 5 homolog 2 2
MIRT706234 SYT15 synaptotagmin 15 2 2
MIRT706494 SEPT6 septin 6 2 2
MIRT710451 BTNL3 butyrophilin like 3 2 2
MIRT711684 ATF7IP activating transcription factor 7 interacting protein 2 2
MIRT711997 F9 coagulation factor IX 2 2
MIRT712727 NCAPG2 non-SMC condensin II complex subunit G2 2 2
MIRT713111 TMBIM4 transmembrane BAX inhibitor motif containing 4 2 2
MIRT713156 YWHAZ tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta 2 2
MIRT713440 AJAP1 adherens junctions associated protein 1 2 2
MIRT713830 NUP98 nucleoporin 98 2 2
MIRT714979 RAB21 RAB21, member RAS oncogene family 2 2
MIRT717411 ZCCHC24 zinc finger CCHC-type containing 24 2 2
MIRT718433 ZNF85 zinc finger protein 85 2 2
MIRT720575 SDHAF2 succinate dehydrogenase complex assembly factor 2 2 2
MIRT725098 TMEM120B transmembrane protein 120B 2 2
miRNA-Drug Associations
miRNA Small Melocule FDA CID Detection Method Condition PMID Year Expression Pattern of miRNA
miR-3192 5-Fluorouracil approved 3385 Microarray CNE cells 22614822 2012 up-regulated
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-3192 Dabrafenib 44462760 NSC764134 approved resistant cell line (A375)
hsa-mir-3192 Cisplatin 5460033 NSC119875 approved sensitive cell line (BxPC3)
hsa-miR-3192-5p Temozolomide 5394 NSC362856 approved sensitive cell line (U251)
hsa-miR-3192-5p Gefitinib 123631 NSC715055 approved resistant cell line (PC9)
hsa-miR-3192-5p Cisplatin 5460033 NSC119875 approved resistant cell line (A549)
hsa-miR-3192-5p Gefitinib 123631 NSC715055 approved sensitive cell line (HCC827)
hsa-miR-3192-5p Platinum 23939 resistant tissue
hsa-miR-3192-5p Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-3192-5p Gemcitabine 60750 NSC613327 approved sensitive cell line (PANC-1) (1500 ng/ml)
hsa-miR-3192-5p Gemcitabine 60750 NSC613327 approved sensitive cell line (PANC-1) (100 ng/ml)

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