pre-miRNA Information
pre-miRNA hsa-mir-4282   
Genomic Coordinates chr6: 72967687 - 72967753
Description Homo sapiens miR-4282 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-4282
Sequence 40| UAAAAUUUGCAUCCAGGA |57
Evidence Experimental
Experiments SOLiD
DRVs in miRNA
Mutant ID Mutant Position Mutant Source
COSN32074657 13 COSMIC
COSN6331413 18 COSMIC
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1195771339 5 dbSNP
rs755058572 6 dbSNP
rs1245753664 11 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol FKBP9   
Synonyms FKBP60, FKBP63, PPIase
Description FK506 binding protein 9
Transcript NM_007270   
Expression
Putative miRNA Targets on FKBP9
3'UTR of FKBP9
(miRNA target sites are highlighted)
>FKBP9|NM_007270|3'UTR
   1 ACCTGGCATGAACCAGATGGTGCCAGGGAGTACGTGACACCAAGCCACCTGTGTGGCAAGACGTGCAGTGAGGGTGCAAG
  81 GGTCTCTCAGAAGTTGCATCATTAGCCAGTAGTAGGTGGGTCACATAGTACCTGGTGTACACATCGGGGTGGGTTGATAT
 161 ATGGGGTGAGAAGTTTGGGCTGATCGCCAGTGATAGTAAACAAAATCTGTGCAGAGGGCCTTAGCATGGGATGTGTCCAG
 241 TATTGAAAAGGCTGCACTGCCAACCATGATTTGTGAGCCTTCTGGGAAATTTTGTTATTAAAGGAATATATAGTGTCAGA
 321 CGGAAGTTATAATCATCTTGGAGGAACCATAAGAAAAGGTGTCCAGGGTATCTATATAAAGAGGGTTAAATTTTTTTTTA
 401 ACTTGCTGGTTAAAACATTTTAGAAATATTCTAGAGATGGGCAGGAGAGTCAAAGGGCTTGCTTGCCCCAGCAGAGTTCC
 481 CAGCAGACAGCCATGGCTCTTCCCAGCAGCCTGTGCAAATTCTGATGATGGCCCCACCCCCGCACACGCACACGCACATC
 561 ATGCTTTTCCAGCTCATCACACCCCGCCCCACTATGGGCCTACCATTAATAGTGTATAACTTGGAGGTTAAAAGAGCCTT
 641 TTGGACAGAAAACTGGGCCAGGAAAAGGCATCTCAGACCACAAATAGAGAATTTGATTCCTCATTTGCCACATAAGTCAT
 721 CTGCTTAGCTTTTCCTTTCCTTTTTTTTTTTTTTTTTTTTTCTGGAGGCAGAGTCTCCCTTTGTCGCCAGGCTGGAGTGC
 801 AGTGGTGCCATCTCGGCTCACTGCAGCACTGTCTCGGCTCACTGCAGCCTCCGCCTCCCGTATTCAAGCGATTCTCCTGT
 881 CTCAGCCTCCTGAGTAGCTGGGACTACAGGTGTGCACCACCACGCCCGGCTAATTTTTGTATTTTTAGTAGAGACGGGGT
 961 TTCACTGTGTTGGCCAGGATGGTCTCAATCTCGACCTCGTGATCCGCCCACCTTGGCCTCCCAAAGTGTTGGGATTACAG
1041 GCGTGACTCACCATGCCCAGCCACTTAGTTTTTTCTTATTCCCACCTTTCTATCCCATAGAACACTCTTTTTTATCTTCC
1121 CTGAACCATATTGATGAGATAAATAGGGCTGGGGGCTGGGCCCCGCTGGTCACTCAACAGAGTATTTCCCTTGGCCGAGA
1201 TGGAAGTTTTGTCCCAATAGATGAGCTGCTGAGCATCAACAAGGTGACATTTTTCTGCTGCCCATTTGTGTCCTGGAGAC
1281 GGTGGTACCCTGAAGGCAGAGGCCAGCTGCCGCAAGACAGCAATGACAGTCCACCTGCCGACCTGATTCCTGCATCATGG
1361 AATAACCACATGGCTACCTTCTATCCTCTGTTCCCAAATGGTGGTGGCACTTATCCTGAAGTCGTCAATGATTTCCCTTT
1441 GAAACTACTTTATTTTACTAATTTAAACTATTTTGTACTGATGTAGCCCTGAGGTAGTTCATGAAAATGCTGTGCACTCA
1521 TTCCATGGAATAAATGTTGGAAAGCTGATCTTTTCTGATATAAAATGTTGAATGATATTAAAAAAAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' agGACCUACGUUUAAAAu 5'
            ||||:   ||||||| 
Target 5' ttCTGGG---AAATTTTg 3'
280 - 294 149.00 -9.60
2
miRNA  3' aggaCCUACGUUUAAAAu 5'
              ||:| :||||||| 
Target 5' aagaGGGT-TAAATTTTt 3'
379 - 395 149.00 -6.70
3
miRNA  3' aggacCUACGUUUAAAAu 5'
               |||| ||:|||| 
Target 5' gccgaGATGGAAGTTTTg 3'
1194 - 1211 141.00 -13.70
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN31501691 3 COSMIC
COSN31608635 7 COSMIC
COSN31598294 23 COSMIC
COSN30654117 25 COSMIC
COSN30524468 37 COSMIC
COSN31501321 42 COSMIC
COSN15929265 87 COSMIC
COSN30137715 138 COSMIC
COSN25039995 165 COSMIC
COSN25315442 400 COSMIC
COSN18877068 434 COSMIC
COSN19080474 478 COSMIC
COSN5656061 1006 COSMIC
COSN5656062 1316 COSMIC
COSN20762836 1340 COSMIC
COSN9985911 1492 COSMIC
rs142854193 548 GWAS
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs748745387 4 dbSNP
rs1410409335 6 dbSNP
rs761546346 7 dbSNP
rs1409971664 9 dbSNP
rs1161573497 14 dbSNP
rs1472526048 19 dbSNP
rs767327471 20 dbSNP
rs749923092 21 dbSNP
rs755719646 24 dbSNP
rs779517748 29 dbSNP
rs371569693 34 dbSNP
rs375302857 35 dbSNP
rs1249769828 37 dbSNP
rs2893455 49 dbSNP
rs1276062948 52 dbSNP
rs563063318 63 dbSNP
rs1215599425 67 dbSNP
rs187615842 69 dbSNP
rs1285951593 73 dbSNP
rs1244412514 74 dbSNP
rs2392202 87 dbSNP
rs750143888 99 dbSNP
rs145567295 110 dbSNP
rs1355054060 111 dbSNP
rs1331001308 116 dbSNP
rs998531666 119 dbSNP
rs1339070337 137 dbSNP
rs1278013344 138 dbSNP
rs1031303077 139 dbSNP
rs1347275375 141 dbSNP
rs1321851091 144 dbSNP
rs1247370294 146 dbSNP
rs1395402186 147 dbSNP
rs546819739 149 dbSNP
rs1476177114 150 dbSNP
rs1185820095 153 dbSNP
rs1011865351 156 dbSNP
rs1018260065 159 dbSNP
rs1243575063 161 dbSNP
rs1256175156 167 dbSNP
rs1467747889 170 dbSNP
rs1273333068 171 dbSNP
rs1214992043 177 dbSNP
rs2893456 178 dbSNP
rs1316635106 179 dbSNP
rs1422712276 181 dbSNP
rs1258009926 185 dbSNP
rs964929747 186 dbSNP
rs976197374 187 dbSNP
rs1162336013 195 dbSNP
rs1371977763 196 dbSNP
rs571426426 204 dbSNP
rs1464162235 212 dbSNP
rs1459197806 220 dbSNP
rs1169675951 225 dbSNP
rs1160298449 226 dbSNP
rs1410396659 233 dbSNP
rs189086037 240 dbSNP
rs1170580390 251 dbSNP
rs1453470887 255 dbSNP
rs1253201765 257 dbSNP
rs983417873 261 dbSNP
rs1456084309 265 dbSNP
rs1231758174 268 dbSNP
rs2392203 278 dbSNP
rs909251731 279 dbSNP
rs1456049009 285 dbSNP
rs571542125 298 dbSNP
rs1380064633 299 dbSNP
rs2392204 304 dbSNP
rs542155631 306 dbSNP
rs1310909201 312 dbSNP
rs1376262222 322 dbSNP
rs148070251 322 dbSNP
rs3088060 323 dbSNP
rs11541013 336 dbSNP
rs1356184046 336 dbSNP
rs554693663 348 dbSNP
rs180993789 351 dbSNP
rs1395400256 356 dbSNP
rs2392205 359 dbSNP
rs1437358867 367 dbSNP
rs1212230141 369 dbSNP
rs1256507576 382 dbSNP
rs1481932454 388 dbSNP
rs1210734962 391 dbSNP
rs1236266511 391 dbSNP
rs1482664052 391 dbSNP
rs1282834451 400 dbSNP
rs1238331053 408 dbSNP
rs1307856046 411 dbSNP
rs1053272460 413 dbSNP
rs1179583576 418 dbSNP
rs1301033638 432 dbSNP
rs10525 434 dbSNP
rs1011639882 440 dbSNP
rs1417537131 468 dbSNP
rs1344211092 477 dbSNP
rs1159333702 480 dbSNP
rs1420377521 483 dbSNP
rs1017872796 488 dbSNP
rs1187871752 489 dbSNP
rs1183355266 502 dbSNP
rs1283798090 503 dbSNP
rs1475819094 512 dbSNP
rs1260123856 517 dbSNP
rs1214873997 523 dbSNP
rs964902435 524 dbSNP
rs1411614330 528 dbSNP
rs553164083 530 dbSNP
rs997646625 531 dbSNP
rs1320009085 532 dbSNP
rs1292673560 535 dbSNP
rs1417690931 539 dbSNP
rs1232669285 541 dbSNP
rs577786736 542 dbSNP
rs1294949205 543 dbSNP
rs142854193 548 dbSNP
rs557354254 549 dbSNP
rs575634317 554 dbSNP
rs1311104260 555 dbSNP
rs1163563789 561 dbSNP
rs1462472198 564 dbSNP
rs1420611324 565 dbSNP
rs1192079052 574 dbSNP
rs909273528 583 dbSNP
rs1410608570 584 dbSNP
rs542653080 586 dbSNP
rs1272681021 587 dbSNP
rs1348467244 605 dbSNP
rs11541014 609 dbSNP
rs963431510 610 dbSNP
rs1336994999 623 dbSNP
rs1301952733 638 dbSNP
rs139897946 639 dbSNP
rs1296023609 655 dbSNP
rs915839442 657 dbSNP
rs1276069504 671 dbSNP
rs1324678615 676 dbSNP
rs185337587 677 dbSNP
rs1395971907 682 dbSNP
rs1045674976 690 dbSNP
rs928487608 694 dbSNP
rs1374057637 699 dbSNP
rs934468359 703 dbSNP
rs1431703914 704 dbSNP
rs1249123944 713 dbSNP
rs1468970516 726 dbSNP
rs1194454151 727 dbSNP
rs956830246 730 dbSNP
rs1193237297 731 dbSNP
rs1469888596 734 dbSNP
rs1236363158 737 dbSNP
rs200068523 739 dbSNP
rs113770362 741 dbSNP
rs1300378878 741 dbSNP
rs1302264870 741 dbSNP
rs1326270810 741 dbSNP
rs1372539926 741 dbSNP
rs1394801241 741 dbSNP
rs1397800507 741 dbSNP
rs1433276536 741 dbSNP
rs1491167431 741 dbSNP
rs575917909 741 dbSNP
rs752337345 741 dbSNP
rs777106203 741 dbSNP
rs66517762 742 dbSNP
rs1426525572 743 dbSNP
rs1433047646 744 dbSNP
rs1455743421 744 dbSNP
rs1378610970 745 dbSNP
rs1171865589 748 dbSNP
rs1392169473 751 dbSNP
rs1430487439 757 dbSNP
rs1437205311 758 dbSNP
rs1197430584 761 dbSNP
rs1251191168 761 dbSNP
rs1491081320 761 dbSNP
rs1307697832 762 dbSNP
rs1338585858 762 dbSNP
rs1491023916 762 dbSNP
rs3109441 763 dbSNP
rs1438369236 765 dbSNP
rs1052896506 766 dbSNP
rs1293854266 766 dbSNP
rs1366821594 767 dbSNP
rs1335784787 771 dbSNP
rs540698110 773 dbSNP
rs118113675 776 dbSNP
rs3109442 780 dbSNP
rs1375298351 786 dbSNP
rs77844797 787 dbSNP
rs1342339269 789 dbSNP
rs1158168088 794 dbSNP
rs1470564711 797 dbSNP
rs1365546576 805 dbSNP
rs1226998517 811 dbSNP
rs550889164 815 dbSNP
rs1039074477 816 dbSNP
rs1211302725 817 dbSNP
rs1486508123 830 dbSNP
rs1281730664 831 dbSNP
rs1204128434 832 dbSNP
rs900764018 832 dbSNP
rs1350771392 834 dbSNP
rs1452935322 837 dbSNP
rs1224246240 846 dbSNP
rs1247600304 848 dbSNP
rs1294335538 853 dbSNP
rs1488353873 854 dbSNP
rs1192383553 855 dbSNP
rs1250407453 857 dbSNP
rs1450218503 858 dbSNP
rs569050452 860 dbSNP
rs569285615 861 dbSNP
rs1162860624 862 dbSNP
rs190150796 870 dbSNP
rs368860957 871 dbSNP
rs1188510069 875 dbSNP
rs1165232312 876 dbSNP
rs1349145226 877 dbSNP
rs1005439839 893 dbSNP
rs1192111659 894 dbSNP
rs1016363896 899 dbSNP
rs1285807342 906 dbSNP
rs1211246247 910 dbSNP
rs963759925 917 dbSNP
rs1274372504 922 dbSNP
rs776954291 924 dbSNP
rs1269974261 925 dbSNP
rs1365778357 928 dbSNP
rs1324013922 929 dbSNP
rs1395238028 931 dbSNP
rs1165568864 934 dbSNP
rs1407011725 940 dbSNP
rs990840141 950 dbSNP
rs1167087435 952 dbSNP
rs1475562177 954 dbSNP
rs1023681337 955 dbSNP
rs1253004068 956 dbSNP
rs148597903 956 dbSNP
rs1358047112 957 dbSNP
rs533662754 959 dbSNP
rs145018288 979 dbSNP
rs571541437 980 dbSNP
rs989020721 984 dbSNP
rs1288699929 993 dbSNP
rs1321541070 994 dbSNP
rs1327990338 997 dbSNP
rs914334591 999 dbSNP
rs1352663580 1000 dbSNP
rs538848704 1004 dbSNP
rs1038778038 1006 dbSNP
rs557683037 1007 dbSNP
rs1171364079 1015 dbSNP
rs1453414795 1023 dbSNP
rs1212182690 1024 dbSNP
rs1250465145 1027 dbSNP
rs900209395 1029 dbSNP
rs1479966528 1030 dbSNP
rs575851132 1041 dbSNP
rs536912539 1043 dbSNP
rs1188009982 1044 dbSNP
rs1139717 1057 dbSNP
rs1127604 1059 dbSNP
rs886666229 1069 dbSNP
rs1005061225 1074 dbSNP
rs1127607 1082 dbSNP
rs1305774521 1086 dbSNP
rs573248849 1093 dbSNP
rs1012780853 1095 dbSNP
rs1278896683 1097 dbSNP
rs796212838 1098 dbSNP
rs1161056167 1100 dbSNP
rs1389296245 1105 dbSNP
rs970741211 1108 dbSNP
rs982084657 1108 dbSNP
rs1375645002 1111 dbSNP
rs1456589097 1115 dbSNP
rs1035619597 1116 dbSNP
rs1139719 1127 dbSNP
rs565365373 1132 dbSNP
rs1255911227 1136 dbSNP
rs914428172 1138 dbSNP
rs947230296 1155 dbSNP
rs151187144 1156 dbSNP
rs544077442 1158 dbSNP
rs562659544 1165 dbSNP
rs1285035591 1166 dbSNP
rs921665420 1178 dbSNP
rs1352231249 1179 dbSNP
rs1291252750 1180 dbSNP
rs1231880636 1183 dbSNP
rs1270340062 1193 dbSNP
rs1330443944 1196 dbSNP
rs1208715712 1197 dbSNP
rs1304234550 1198 dbSNP
rs867945422 1214 dbSNP
rs529959068 1227 dbSNP
rs1444237508 1231 dbSNP
rs1159168440 1234 dbSNP
rs10142 1235 dbSNP
rs1416382763 1245 dbSNP
rs575286461 1248 dbSNP
rs1187800829 1260 dbSNP
rs1475748957 1261 dbSNP
rs1237150105 1262 dbSNP
rs1485655161 1273 dbSNP
rs1242823086 1278 dbSNP
rs559743701 1280 dbSNP
rs1332714488 1281 dbSNP
rs200192440 1282 dbSNP
rs1184092677 1284 dbSNP
rs908138809 1286 dbSNP
rs1472138069 1293 dbSNP
rs1156779580 1295 dbSNP
rs1380219320 1303 dbSNP
rs940980274 1305 dbSNP
rs1320767651 1308 dbSNP
rs545977564 1309 dbSNP
rs2953615 1312 dbSNP
rs1037951051 1313 dbSNP
rs899358402 1324 dbSNP
rs1012398695 1339 dbSNP
rs1168744579 1340 dbSNP
rs1332890049 1341 dbSNP
rs1428182551 1345 dbSNP
rs1045191114 1346 dbSNP
rs1190700165 1353 dbSNP
rs1467204501 1363 dbSNP
rs1252447231 1371 dbSNP
rs1373247617 1372 dbSNP
rs1213058554 1373 dbSNP
rs1488754201 1379 dbSNP
rs906586940 1380 dbSNP
rs1225012227 1386 dbSNP
rs1306659451 1389 dbSNP
rs1003551900 1400 dbSNP
rs1411216595 1406 dbSNP
rs1368231196 1409 dbSNP
rs1324615150 1414 dbSNP
rs1030967094 1417 dbSNP
rs1010602590 1424 dbSNP
rs551894049 1425 dbSNP
rs1021527691 1429 dbSNP
rs1452796611 1431 dbSNP
rs1238744154 1435 dbSNP
rs1194304930 1443 dbSNP
rs1373699288 1453 dbSNP
rs1434942060 1454 dbSNP
rs1278345952 1458 dbSNP
rs762633831 1459 dbSNP
rs1201111121 1470 dbSNP
rs968978253 1471 dbSNP
rs1480191448 1473 dbSNP
rs1275088875 1484 dbSNP
rs974522130 1485 dbSNP
rs570208564 1486 dbSNP
rs1302106497 1489 dbSNP
rs1233376336 1490 dbSNP
rs1207644164 1498 dbSNP
rs1332270682 1502 dbSNP
rs921696190 1518 dbSNP
rs1391253215 1521 dbSNP
rs1252767476 1522 dbSNP
rs537900870 1540 dbSNP
rs1127719 1556 dbSNP
rs1371624010 1563 dbSNP
rs145613042 1577 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HEK293S
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in GSM1084078. RNA binding protein: AGO2. Condition:CLIP_nohippuristanol_rep2_AbnovaAb ...

- Karginov FV; Hannon GJ, 2013, Genes & development.

Article - Karginov FV; Hannon GJ
- Genes & development, 2013
When adapting to environmental stress, cells attenuate and reprogram their translational output. In part, these altered translation profiles are established through changes in the interactions between RNA-binding proteins and mRNAs. The Argonaute 2 (Ago2)/microRNA (miRNA) machinery has been shown to participate in stress-induced translational up-regulation of a particular mRNA, CAT-1; however, a detailed, transcriptome-wide understanding of the involvement of Ago2 in the process has been lacking. Here, we profiled the overall changes in Ago2-mRNA interactions upon arsenite stress by cross-linking immunoprecipitation (CLIP) followed by high-throughput sequencing (CLIP-seq). Ago2 displayed a significant remodeling of its transcript occupancy, with the majority of 3' untranslated region (UTR) and coding sequence (CDS) sites exhibiting stronger interaction. Interestingly, target sites that were destined for release from Ago2 upon stress were depleted in miRNA complementarity signatures, suggesting an alternative mode of interaction. To compare the changes in Ago2-binding patterns across transcripts with changes in their translational states, we measured mRNA profiles on ribosome/polysome gradients by RNA sequencing (RNA-seq). Increased Ago2 occupancy correlated with stronger repression of translation for those mRNAs, as evidenced by a shift toward lighter gradient fractions upon stress, while release of Ago2 was associated with the limited number of transcripts that remained translated. Taken together, these data point to a role for Ago2 and the mammalian miRNAs in mediating the translational component of the stress response.
LinkOut: [PMID: 23824327]
CLIP-seq Support 1 for dataset GSM4903833
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_a
Location of target site NM_007270 | 3UTR | GAGGGUUAAAUUUUUUUUUAACUUGCUGGUUAAAACAUUUUAGAAAUAUUCUAGAGAUGGGCAGGA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM4903834
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_b
Location of target site NM_007270 | 3UTR | UGAAAAGGCUGCACUGCCAACCAUGAUUUGUGAGCCUUCUGGGAAAUUUUGUUAUUAAAGGAAUAUAUA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 3 for dataset GSM4903835
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_c
Location of target site NM_007270 | 3UTR | UGCACUGCCAACCAUGAUUUGUGAGCCUUCUGGGAAAUUUUGUUAUUAAAGGAAUAUAUA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 4 for dataset GSM4903836
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / 124_TD_21_a
Location of target site NM_007270 | 3UTR | AUUGAAAAGGCUGCACUGCCAACCAUGAUUUGUGAGCCUUCUGGGAAAUUUUGUUAUUAAAGGAAUAUAUA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 5 for dataset GSM4903837
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / 124_TD_21_b
Location of target site NM_007270 | 3UTR | AGCAUGGGAUGUGUCCAGUAUUGAAAAGGCUGCACUGCCAACCAUGAUUUGUGAGCCUUCUGGGAAAUUUUGUUAUUAAAGGAAUAUAUA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 6 for dataset GSM4903838
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / 124_TD_21_c
Location of target site NM_007270 | 3UTR | UGUGAGCCUUCUGGGAAAUUUUGUUAUUAAAGGAAUAUAUA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 7 for dataset GSM1084078
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_nohippuristanol_rep2_AbnovaAb
Location of target site ENST00000242209.4 | 3UTR | AAAAUUUUUUUUUUUUUUGC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
280 hsa-miR-4282 Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT057628 LCOR ligand dependent nuclear receptor corepressor 2 2
MIRT060732 RPS3 ribosomal protein S3 2 2
MIRT063371 ETNK1 ethanolamine kinase 1 2 2
MIRT066257 LRIG3 leucine rich repeats and immunoglobulin like domains 3 2 4
MIRT070774 HIF1A hypoxia inducible factor 1 alpha subunit 2 2
MIRT070871 EIF2S1 eukaryotic translation initiation factor 2 subunit alpha 2 4
MIRT078056 PCTP phosphatidylcholine transfer protein 2 2
MIRT078408 DCAF7 DDB1 and CUL4 associated factor 7 2 4
MIRT084059 PPP1R3D protein phosphatase 1 regulatory subunit 3D 2 2
MIRT093537 GALNT7 polypeptide N-acetylgalactosaminyltransferase 7 2 6
MIRT096072 SFXN1 sideroflexin 1 2 2
MIRT098316 REV3L REV3 like, DNA directed polymerase zeta catalytic subunit 2 2
MIRT100493 UHRF1BP1 UHRF1 binding protein 1 2 2
MIRT102254 HBP1 HMG-box transcription factor 1 2 4
MIRT105318 VPS37A VPS37A, ESCRT-I subunit 2 2
MIRT114143 MZT1 mitotic spindle organizing protein 1 2 4
MIRT114873 DICER1 dicer 1, ribonuclease III 2 2
MIRT134683 PNRC2 proline rich nuclear receptor coactivator 2 2 2
MIRT137640 RCOR1 REST corepressor 1 2 2
MIRT155449 CCNT2 cyclin T2 2 4
MIRT165656 DCTN4 dynactin subunit 4 2 2
MIRT177570 CSTF2T cleavage stimulation factor subunit 2 tau variant 2 4
MIRT188514 E2F7 E2F transcription factor 7 2 10
MIRT193019 TMOD3 tropomodulin 3 2 4
MIRT195823 GADD45A growth arrest and DNA damage inducible alpha 2 2
MIRT195885 DEPDC1 DEP domain containing 1 2 6
MIRT206029 NUP50 nucleoporin 50 2 6
MIRT212148 CLCN3 chloride voltage-gated channel 3 2 2
MIRT213999 DCP2 decapping mRNA 2 2 2
MIRT214650 HNRNPA0 heterogeneous nuclear ribonucleoprotein A0 2 2
MIRT221568 CBX3 chromobox 3 2 2
MIRT224544 ZNF623 zinc finger protein 623 2 2
MIRT227654 SET SET nuclear proto-oncogene 2 2
MIRT229992 CHIC1 cysteine rich hydrophobic domain 1 2 2
MIRT238968 QKI QKI, KH domain containing RNA binding 2 2
MIRT239825 ACTB actin beta 2 2
MIRT241084 ZXDA zinc finger, X-linked, duplicated A 2 4
MIRT244852 ZBTB5 zinc finger and BTB domain containing 5 2 2
MIRT264534 TARDBP TAR DNA binding protein 2 2
MIRT271438 SKI SKI proto-oncogene 2 2
MIRT271597 ENAH ENAH, actin regulator 2 2
MIRT294332 ZNF264 zinc finger protein 264 2 2
MIRT296341 PARD6B par-6 family cell polarity regulator beta 2 2
MIRT301715 TEF TEF, PAR bZIP transcription factor 2 2
MIRT308549 ZNF654 zinc finger protein 654 2 2
MIRT313866 DEPDC1B DEP domain containing 1B 2 2
MIRT315529 MARCKS myristoylated alanine rich protein kinase C substrate 2 2
MIRT321066 RABGEF1 RAB guanine nucleotide exchange factor 1 2 2
MIRT343777 NUTF2 nuclear transport factor 2 2 2
MIRT359109 MAP1B microtubule associated protein 1B 2 2
MIRT397393 GOLGA3 golgin A3 2 4
MIRT400822 CPEB2 cytoplasmic polyadenylation element binding protein 2 2 2
MIRT442171 DSEL dermatan sulfate epimerase-like 2 2
MIRT442777 JAG1 jagged 1 2 2
MIRT442862 SCARF1 scavenger receptor class F member 1 2 4
MIRT442919 PCBD2 pterin-4 alpha-carbinolamine dehydratase 2 2 2
MIRT444567 TRA2B transformer 2 beta homolog 2 2
MIRT444718 CMSS1 cms1 ribosomal small subunit homolog (yeast) 2 2
MIRT445018 RBMS3 RNA binding motif single stranded interacting protein 3 2 2
MIRT445853 LRRC1 leucine rich repeat containing 1 2 2
MIRT446242 HELZ helicase with zinc finger 2 2
MIRT446542 GOLGA8B golgin A8 family member B 2 2
MIRT446643 SPTY2D1 SPT2 chromatin protein domain containing 1 2 2
MIRT446948 ZMAT3 zinc finger matrin-type 3 2 4
MIRT447061 KCNAB1 potassium voltage-gated channel subfamily A member regulatory beta subunit 1 2 2
MIRT447327 ZSCAN21 zinc finger and SCAN domain containing 21 2 2
MIRT447995 CDX1 caudal type homeobox 1 2 2
MIRT448543 RHEBP1 RHEB pseudogene 1 2 6
MIRT448752 HINT1 histidine triad nucleotide binding protein 1 2 2
MIRT448772 GOLGA8A golgin A8 family member A 2 2
MIRT449342 WDR26 WD repeat domain 26 2 2
MIRT450011 SLC16A6 solute carrier family 16 member 6 2 4
MIRT450229 PCNX pecanex homolog 1 2 2
MIRT450340 MRPL17 mitochondrial ribosomal protein L17 2 4
MIRT450381 MSI2 musashi RNA binding protein 2 2 2
MIRT450759 PGGT1B protein geranylgeranyltransferase type I subunit beta 2 2
MIRT450809 NRCAM neuronal cell adhesion molecule 2 2
MIRT450947 ATAD2 ATPase family, AAA domain containing 2 2 2
MIRT459095 CCPG1 cell cycle progression 1 2 2
MIRT462428 TWISTNB TWIST neighbor 2 2
MIRT465200 TROVE2 TROVE domain family member 2 2 4
MIRT467382 SON SON DNA binding protein 2 4
MIRT468546 SERP1 stress associated endoplasmic reticulum protein 1 2 2
MIRT471506 PDE4D phosphodiesterase 4D 2 2
MIRT471981 NR3C1 nuclear receptor subfamily 3 group C member 1 2 2
MIRT474478 KLHL11 kelch like family member 11 2 8
MIRT475011 KANSL1 KAT8 regulatory NSL complex subunit 1 2 8
MIRT480341 C5orf51 chromosome 5 open reading frame 51 2 2
MIRT482696 TEX9 testis expressed 9 2 6
MIRT483462 YTHDF1 YTH N6-methyladenosine RNA binding protein 1 2 6
MIRT485623 FAM217B family with sequence similarity 217 member B 2 2
MIRT485714 CASP16 caspase 16, pseudogene 2 8
MIRT486279 SEC23A Sec23 homolog A, coat complex II component 2 2
MIRT491000 PEBP1 phosphatidylethanolamine binding protein 1 2 4
MIRT492594 PPIL4 peptidylprolyl isomerase like 4 2 2
MIRT493365 KIF5B kinesin family member 5B 2 2
MIRT494316 CDKN1B cyclin dependent kinase inhibitor 1B 2 2
MIRT495208 EDN3 endothelin 3 2 2
MIRT497011 TCF15 transcription factor 15 2 2
MIRT498512 FRK fyn related Src family tyrosine kinase 2 2
MIRT498778 PARP15 poly(ADP-ribose) polymerase family member 15 2 2
MIRT501045 SMG1 SMG1, nonsense mediated mRNA decay associated PI3K related kinase 2 6
MIRT502939 CDC37L1 cell division cycle 37 like 1 2 8
MIRT504806 VHL von Hippel-Lindau tumor suppressor 2 6
MIRT505656 SHMT1 serine hydroxymethyltransferase 1 2 6
MIRT505964 RAB5C RAB5C, member RAS oncogene family 2 6
MIRT506322 OTUD4 OTU deubiquitinase 4 2 4
MIRT506803 KLHL15 kelch like family member 15 2 6
MIRT506917 KBTBD8 kelch repeat and BTB domain containing 8 2 4
MIRT507400 EMC7 ER membrane protein complex subunit 7 2 8
MIRT507471 EDEM3 ER degradation enhancing alpha-mannosidase like protein 3 2 6
MIRT508058 ATP13A3 ATPase 13A3 2 4
MIRT508135 AMD1 adenosylmethionine decarboxylase 1 2 2
MIRT509895 RPS23 ribosomal protein S23 2 4
MIRT510881 RAN RAN, member RAS oncogene family 2 8
MIRT513766 PEX5L peroxisomal biogenesis factor 5 like 2 4
MIRT516898 COPS8 COP9 signalosome subunit 8 2 2
MIRT518703 TIMD4 T-cell immunoglobulin and mucin domain containing 4 2 4
MIRT520429 TTPAL alpha tocopherol transfer protein like 2 6
MIRT521843 PNISR PNN interacting serine and arginine rich protein 2 4
MIRT522116 NUDT3 nudix hydrolase 3 2 4
MIRT525467 TMPRSS12 transmembrane protease, serine 12 2 2
MIRT525583 MTRNR2L7 MT-RNR2-like 7 2 2
MIRT525906 BUB1 BUB1 mitotic checkpoint serine/threonine kinase 2 2
MIRT526072 C11orf54 chromosome 11 open reading frame 54 2 2
MIRT526232 MTRNR2L5 MT-RNR2-like 5 2 4
MIRT526455 FAM71F2 family with sequence similarity 71 member F2 2 4
MIRT526515 POU5F1B POU class 5 homeobox 1B 2 2
MIRT528032 FEZ2 fasciculation and elongation protein zeta 2 2 2
MIRT528422 MRPS16 mitochondrial ribosomal protein S16 2 2
MIRT528995 ISLR2 immunoglobulin superfamily containing leucine rich repeat 2 2 4
MIRT529311 ATRNL1 attractin like 1 2 2
MIRT529376 SKP1 S-phase kinase associated protein 1 2 4
MIRT530015 SRRM1 serine and arginine repetitive matrix 1 2 2
MIRT530089 FMN2 formin 2 2 2
MIRT530942 ENPP6 ectonucleotide pyrophosphatase/phosphodiesterase 6 2 2
MIRT531229 HIST1H2BD histone cluster 1 H2B family member d 2 2
MIRT533088 YTHDF3 YTH N6-methyladenosine RNA binding protein 3 2 2
MIRT533299 USP46 ubiquitin specific peptidase 46 2 2
MIRT533318 UNKL unkempt family like zinc finger 2 2
MIRT533721 TMEM30A transmembrane protein 30A 2 2
MIRT534096 AZF1 azoospermia factor 1 2 2
MIRT534188 SLC7A11 solute carrier family 7 member 11 2 2
MIRT534493 SAR1B secretion associated Ras related GTPase 1B 2 2
MIRT536077 MBOAT2 membrane bound O-acyltransferase domain containing 2 2 2
MIRT536242 LRIG2 leucine rich repeats and immunoglobulin like domains 2 2 2
MIRT537524 FAM104A family with sequence similarity 104 member A 2 2
MIRT538088 DGKH diacylglycerol kinase eta 2 2
MIRT538475 CNBP CCHC-type zinc finger nucleic acid binding protein 2 2
MIRT538853 BTG1 BTG anti-proliferation factor 1 2 4
MIRT539075 GDNF glial cell derived neurotrophic factor 2 2
MIRT539480 ACVR2B activin A receptor type 2B 2 4
MIRT540210 ARHGAP18 Rho GTPase activating protein 18 2 2
MIRT541940 TSPAN2 tetraspanin 2 2 2
MIRT543812 COCH cochlin 2 2
MIRT545120 PDZRN4 PDZ domain containing ring finger 4 2 2
MIRT545571 GIMAP4 GTPase, IMAP family member 4 2 2
MIRT545989 XKR4 XK related 4 2 2
MIRT547213 PANK3 pantothenate kinase 3 2 4
MIRT547740 KIAA1468 KIAA1468 2 2
MIRT548022 GRB2 growth factor receptor bound protein 2 2 4
MIRT548032 GOLIM4 golgi integral membrane protein 4 2 2
MIRT548102 GFPT1 glutamine--fructose-6-phosphate transaminase 1 2 4
MIRT548217 FKBP1A FK506 binding protein 1A 2 2
MIRT548588 DDX3X DEAD-box helicase 3, X-linked 2 4
MIRT548953 CDC27 cell division cycle 27 2 2
MIRT549072 CACUL1 CDK2 associated cullin domain 1 2 2
MIRT550368 INCENP inner centromere protein 2 6
MIRT550546 MYZAP myocardial zonula adherens protein 2 2
MIRT551491 TMEM192 transmembrane protein 192 2 4
MIRT553078 UEVLD UEV and lactate/malate dehyrogenase domains 2 2
MIRT554104 SMU1 DNA replication regulator and spliceosomal factor 2 2
MIRT555127 PTPRG protein tyrosine phosphatase, receptor type G 2 2
MIRT555477 POC1B-GALNT4 POC1B-GALNT4 readthrough 2 2
MIRT555978 NPTN neuroplastin 2 2
MIRT557011 HPRT1 hypoxanthine phosphoribosyltransferase 1 2 2
MIRT557706 GALNT4 polypeptide N-acetylgalactosaminyltransferase 4 2 2
MIRT558333 DNAJC28 DnaJ heat shock protein family (Hsp40) member C28 2 4
MIRT558488 DBN1 drebrin 1 2 2
MIRT559942 ZNF567 zinc finger protein 567 2 2
MIRT561127 ATP2B1 ATPase plasma membrane Ca2+ transporting 1 2 2
MIRT561791 PAWR pro-apoptotic WT1 regulator 2 2
MIRT562438 EEF2 eukaryotic translation elongation factor 2 2 2
MIRT563102 PABPC4L poly(A) binding protein cytoplasmic 4 like 2 2
MIRT563212 ZNF813 zinc finger protein 813 2 2
MIRT563426 KIF3A kinesin family member 3A 2 2
MIRT563473 SPIN4 spindlin family member 4 2 2
MIRT564015 HSPA4 heat shock protein family A (Hsp70) member 4 2 4
MIRT564117 ZYG11B zyg-11 family member B, cell cycle regulator 2 2
MIRT564223 SDE2 SDE2 telomere maintenance homolog 2 2
MIRT564503 CACNG1 calcium voltage-gated channel auxiliary subunit gamma 1 2 2
MIRT564515 DUSP3 dual specificity phosphatase 3 2 2
MIRT564811 ZBTB21 zinc finger and BTB domain containing 21 2 2
MIRT565265 TPD52 tumor protein D52 2 2
MIRT566012 RHOB ras homolog family member B 2 2
MIRT566216 PTMA prothymosin, alpha 2 2
MIRT566638 NFYA nuclear transcription factor Y subunit alpha 2 2
MIRT566821 MAPK8 mitogen-activated protein kinase 8 2 2
MIRT566948 LEPROT leptin receptor overlapping transcript 2 2
MIRT567290 HNRNPAB heterogeneous nuclear ribonucleoprotein A/B 2 2
MIRT567895 CSTF2 cleavage stimulation factor subunit 2 2 2
MIRT568731 MTRNR2L3 MT-RNR2-like 3 2 2
MIRT571263 ZNF239 zinc finger protein 239 2 2
MIRT572593 EIF2AK4 eukaryotic translation initiation factor 2 alpha kinase 4 2 2
MIRT573827 TGOLN2 trans-golgi network protein 2 2 2
MIRT576391 Fhl2 four and a half LIM domains 2 2 2
MIRT609901 SMS spermine synthase 2 2
MIRT613710 ELMSAN1 ELM2 and Myb/SANT domain containing 1 2 2
MIRT614406 ADAT1 adenosine deaminase, tRNA specific 1 2 2
MIRT615042 DCX doublecortin 2 2
MIRT617514 C5orf45 MRN complex interacting protein 2 2
MIRT619476 PRDM10 PR/SET domain 10 2 2
MIRT620349 TLN1 talin 1 2 2
MIRT620910 PLA2G7 phospholipase A2 group VII 2 2
MIRT622131 SP4 Sp4 transcription factor 2 2
MIRT622955 OTUD7B OTU deubiquitinase 7B 2 2
MIRT623351 MAGI3 membrane associated guanylate kinase, WW and PDZ domain containing 3 2 2
MIRT623619 INTU inturned planar cell polarity protein 2 2
MIRT624409 CCDC171 coiled-coil domain containing 171 2 2
MIRT625171 CCS copper chaperone for superoxide dismutase 2 2
MIRT625685 RPP40 ribonuclease P/MRP subunit p40 2 2
MIRT625875 ALDH18A1 aldehyde dehydrogenase 18 family member A1 2 2
MIRT626002 FAM107A family with sequence similarity 107 member A 2 2
MIRT626872 HRH4 histamine receptor H4 2 4
MIRT628220 FKBP9 FK506 binding protein 9 2 2
MIRT628265 DIO2 iodothyronine deiodinase 2 2 2
MIRT628402 C8orf37 chromosome 8 open reading frame 37 2 2
MIRT630564 C3orf36 chromosome 3 open reading frame 36 2 4
MIRT631577 RASSF9 Ras association domain family member 9 2 2
MIRT635730 CCDC58 coiled-coil domain containing 58 2 2
MIRT636224 SLC8A1 solute carrier family 8 member A1 2 2
MIRT636613 CLIC5 chloride intracellular channel 5 2 2
MIRT638899 CDK9 cyclin dependent kinase 9 2 2
MIRT640167 ATXN7L1 ataxin 7 like 1 2 2
MIRT642070 GTDC1 glycosyltransferase like domain containing 1 2 2
MIRT643034 CHCHD7 coiled-coil-helix-coiled-coil-helix domain containing 7 2 2
MIRT644572 SPOP speckle type BTB/POZ protein 2 2
MIRT644954 IFNB1 interferon beta 1 2 2
MIRT645948 TTF2 transcription termination factor 2 2 2
MIRT646440 XRCC2 X-ray repair cross complementing 2 2 2
MIRT647896 EPN2 epsin 2 2 2
MIRT648276 ZNF582 zinc finger protein 582 2 2
MIRT649381 NEDD1 neural precursor cell expressed, developmentally down-regulated 1 2 2
MIRT650254 CD68 CD68 molecule 2 2
MIRT650333 ATP5S ATP synthase, H+ transporting, mitochondrial Fo complex subunit s (factor B) 2 2
MIRT651707 VMP1 vacuole membrane protein 1 2 2
MIRT651774 VASP vasodilator stimulated phosphoprotein 2 2
MIRT653144 SRPK2 SRSF protein kinase 2 2 2
MIRT654112 RPS6KA5 ribosomal protein S6 kinase A5 2 2
MIRT654161 RORB RAR related orphan receptor B 2 2
MIRT655716 MLF2 myeloid leukemia factor 2 2 2
MIRT657476 HDAC4 histone deacetylase 4 2 2
MIRT658095 FOXO1 forkhead box O1 2 2
MIRT658860 DTX3L deltex E3 ubiquitin ligase 3L 2 2
MIRT658988 DNAJA1 DnaJ heat shock protein family (Hsp40) member A1 2 2
MIRT660767 ALDH6A1 aldehyde dehydrogenase 6 family member A1 2 2
MIRT661622 C2orf15 chromosome 2 open reading frame 15 2 2
MIRT661694 TFDP2 transcription factor Dp-2 2 2
MIRT662208 PLA2G4E phospholipase A2 group IVE 2 2
MIRT662443 RALGAPA1 Ral GTPase activating protein catalytic alpha subunit 1 2 2
MIRT664422 ADH5 alcohol dehydrogenase 5 (class III), chi polypeptide 2 2
MIRT687505 NECAB1 N-terminal EF-hand calcium binding protein 1 2 2
MIRT689910 SOD2 superoxide dismutase 2 2 2
MIRT690781 PLA2G2C phospholipase A2 group IIC 2 2
MIRT698488 TIAL1 TIA1 cytotoxic granule associated RNA binding protein like 1 2 2
MIRT699685 SFMBT2 Scm like with four mbt domains 2 2 2
MIRT700926 PDS5A PDS5 cohesin associated factor A 2 2
MIRT702258 LMNB1 lamin B1 2 2
MIRT703166 GPR137C G protein-coupled receptor 137C 2 2
MIRT703242 GNS glucosamine (N-acetyl)-6-sulfatase 2 2
MIRT704737 CENPQ centromere protein Q 2 2
MIRT707310 GLRX2 glutaredoxin 2 2 2
MIRT710021 KCNQ5 potassium voltage-gated channel subfamily Q member 5 2 2
MIRT712212 SCOC short coiled-coil protein 2 2
MIRT714742 SETBP1 SET binding protein 1 2 2
MIRT718268 ZNF749 zinc finger protein 749 2 2
MIRT720553 DYRK4 dual specificity tyrosine phosphorylation regulated kinase 4 2 2
MIRT722248 RBM41 RNA binding motif protein 41 2 2
MIRT723767 MPLKIP M-phase specific PLK1 interacting protein 2 2
MIRT723977 KIAA0146 scaffolding protein involved in DNA repair 1 1
miRNA-Drug Associations
miRNA Small Melocule FDA CID Detection Method Condition PMID Year Expression Pattern of miRNA
miR-4 Dexamethasone approved 5743 Microarray primary rat thymocytes 20847043 2010 up-regulated
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-4282 Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-4282 Neoadjuvant chemotherapy sensitive tissue (breast cancer)
hsa-miR-4282 Neoadjuvant chemotherapy sensitive tissue (breast cancer)

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