pre-miRNA Information
pre-miRNA hsa-mir-4793   
Genomic Coordinates chr3: 48644194 - 48644280
Description Homo sapiens miR-4793 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-4793-3p
Sequence 58| UCUGCACUGUGAGUUGGCUGGCU |80
Evidence Experimental
Experiments Illumina
DRVs in miRNA
Mutant ID Mutant Position Mutant Source
COSM5899925 14 COSMIC
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs779602935 6 dbSNP
rs757908486 7 dbSNP
rs1422853760 15 dbSNP
rs377721296 23 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol KLLN   
Synonyms CWS4, KILLIN
Description killin, p53-regulated DNA replication inhibitor
Transcript NM_001126049   
Expression
Putative miRNA Targets on KLLN
3'UTR of KLLN
(miRNA target sites are highlighted)
>KLLN|NM_001126049|3'UTR
   1 GACCTGAGACTCACTCCTTGCTCTACATCGACCTATTCTGCGCCTTCCCAAACGTGGGAAAAGGAGCTGGGCGCTAGGGC
  81 TCTCGGGCCTCTCCATCGCTGATGCCCTGCCGCTTAGGGTGAACCCTTTTGGTTCTGTGCTTGAGGGTATCTCCTGCTGC
 161 AGCCCAGAGCGTGCATTCTCCGATGTTGCAACAAACGTCCAGTCACTACCCCTGAGCTGGTGAGCGCGCCCCACCTACTG
 241 TGGACTCAGCCAAGTGACTTATCTGGTCTGAGAACCTAGTCAATGGCCGTCAGCCCAGAACAAACCTGTCAAGTCTGTTT
 321 ACAGCCCCGATTGGGCTGACCTGTCACCGTGAGAGAGCTGATTCGGAAATGCTGAGAGTTGGATCGCACTCCTACCCCGC
 401 ACCCCACCCGTCAAGGATCTACAAAGCAAGTAGTCGACCCGCTTAAAGAGAATGAGCATCAACACCAGTCTGGGAATTTA
 481 TTGTTTTTTCATTTCCCTTAGGAAGTAGAACTACAGACGACAATTTGAGTCAAAAAATATCTAACGAGACCTAGGTTGAA
 561 GCACTGAGTTGTTTTTCAAACTTTGAGAGAATGAGAATCAATCTGCATGTGTGTTCAATAATTGTAAGTGCCTAGCAAAG
 641 TCTAAAGAGGGTTTATGCTGTATTTGAGAAAGAGTACTGTATATGTGCACATCATAGTTGCAGGCAACCTCTGAAGACTA
 721 GAAACCTCAAGAGACCTAGCGCAGAAAGCCACAGGCCATTACCTAACTCCGGGACTACTAATTAAACCTGGGATATTTAC
 801 AGTGTTCTTAGAGACCTCTGAGGCTCCATAAAACTTTGCACTTATATACAGCATTTAAGATAGCTGTGCAGGAGTTAACA
 881 ACCTGCTGAAGCTTCAGTGTTGATATTTATTGAAGACTGGTTTTGTGCATAGTTCTGGTCAGCTTGGGAAAGGCAAGGAC
 961 CACAGTGGAAAAGGAAATGGAAAGCAACCGGAAAAGAGTAAGAGAAAGGCCTCCAGTTGATTTCCAGAGATGCAGATACT
1041 GTCCACACAGCCTAGCGTGAACTACAGATTTCATTATTGTATAAATAACCAAAGATAAGGAGTTCCTGATGTCTAGGTGT
1121 TCTACTAGATTGCATGGTAAAAACCAGAGCTGTGTTTAATTATCAATTACTGCGTGGTAGAAAAAGGGAAAATGAAGATG
1201 AACTTTTAAAAGGGGAGTAGATTAGGGAGGGGTAAAATGTCTCACATTTGTTTCTTAGATTGCTGATCTTGTCTCCAGAG
1281 TCCCTGTTATTAGCACTGCCCTTCTCTGTCCCTCCCCTGGAGCCTACCCTAAGTGACAATTAGTCTCATAGCATCTGAGA
1361 ATCTCTGAAATCTGCTTTCATGGAAGCAAATGAAACAAGGGTGCATTCCTGTCCTGGTGCGACAGAATCCTCTTGGATTC
1441 CATGGCACAGAGTTACTCTGGAGCAGAGATAATCTGCATCACCAGCACTAAAGTGCTAGAATATGAGACCAGCCTCCAAG
1521 TACTTCCATCCGGCTGAAGAAAGAAAATGGGAAATGGGTTTTACTGCTTCTCTAAACATCAGGTCCCTCTACTTCTCTCT
1601 AGTGGTGAATGAAAGGATCATCAATGTTGGCAGATATTTGGCCAGCCCAACAGCAACATCAGGTGGTTATTAGGAGTTGG
1681 TGAATAAAATCCTCCTTCTGTTCCTAGTGTTAAGTTGTTTCTGAAAGAAATACTGATGCATCCTTTTCCAATTTTTTGTT
1761 TTTCTTTTCCTTTCTACCCAAATGGCTGGCCCTATCTAAACTAAAGAAAGTTTCAAAAATAGTACTTTTTTAAAGTTCAG
1841 TTGAAAATACCTGCTTGGCTGTATAGATATTACAATACACTGGTCTCCAAGCACTTCAGTTCTTTTTTTTTTTTTCTTTT
1921 TTTTTTTTTTTTTTTGAGACGGAGTCTCACAGGCTGGAGTGCAGTGGCATGATCTCGGTTCACTGCAACCTCTGCCTCCC
2001 AGGTTCAAGCAATTCCCCTGCCTCAGCCTCCCGAGTAGCTGGGACTACAGGCGCACACCATCATGCCGGGCTAATTTTTT
2081 GTAGTTTAGTAAAGACAGGGTTTCACCATGTTGGTCAGGATGGTCTCGATCTCCTGACCTCGTGATCTGCCCGCCACGGC
2161 CTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCGCGCCCGGCCATACTTAGTTCTTTACCTGTCTGGATTCAGAACCA
2241 GAATACCATAGGGAGAAGTAGAAGCTTGTAACAAAGGGACAATTATATAAAGCTTCAGGGTGACTATGTAGATTGATTAG
2321 TAAGCATGGTAAACTAGCTTTAATTATCGCTTCTAACAGCTGATTCCAAAACTCTATTGTTACTACACCAAAATAATGTC
2401 GAAAGAAAATTTCTTTCTTATTTTCTTTGATAAGCGAAATGACCAGCAACTTGATGTGGATGATATAAATACTTGATGTG
2481 CTCTTTGTAGGTCATCTGCTAAGATGTCTTTTGTGTAAACACTCTGATCTCTATAGTGCCTTTCTCATCTCCCATACGCT
2561 GACCTTTCAAAAAGGGATCTAACTCAATAGCTTTAATTTTTAAACAATCTTCTGTATTTCTGTCTGTTTAACTACTGTTT
2641 TCTAAATAATACAGAATATAAAAACATAATAATCATTGGATTGAATGTAAACCCATTGTTCCAAGGGTCTGAGGTTTTCC
2721 CCTTATTTCATTTATCCTAATAACAAACATTATTGTTCTTTCAATAAAGATAATTTTAAGACATTCTCCA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' ucGGUCGGUUGAGUGUCACGUCu 5'
            :|| | ::|| : ||||||| 
Target 5' tcTCA-CAGGCT-GGAGTGCAGt 3'
1945 - 1965 147.00 -14.31
2
miRNA  3' ucGGUCGGUUGA--GUGUC-ACGUCu 5'
            ||||:::|:|  || || ||||| 
Target 5' ctCCAGTTGATTTCCAGAGATGCAGa 3'
1011 - 1036 139.00 -20.40
3
miRNA  3' ucGGUCGGUUGAGUGUCACG-UCu 5'
            |||||  ||| | ||||| || 
Target 5' caCCAGC--ACT-AAAGTGCTAGa 3'
1480 - 1500 132.00 -18.80
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN31574929 1 COSMIC
COSN30160980 14 COSMIC
COSN31490271 64 COSMIC
COSN31582232 80 COSMIC
COSN26436155 102 COSMIC
COSN31533169 110 COSMIC
COSN22854166 209 COSMIC
COSN30531383 213 COSMIC
COSN1505581 348 COSMIC
COSN24511889 972 COSMIC
COSN21695425 1539 COSMIC
COSN505896 1764 COSMIC
COSN19093736 1915 COSMIC
COSN23840717 2056 COSMIC
COSN23803340 2153 COSMIC
COSN21463033 2201 COSMIC
COSN32056259 2435 COSMIC
COSN22178104 2679 COSMIC
COSN26218223 2740 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1252090932 1 dbSNP
rs1221372634 3 dbSNP
rs1320293027 15 dbSNP
rs866089700 16 dbSNP
rs1247277998 17 dbSNP
rs1453243802 19 dbSNP
rs754403847 20 dbSNP
rs948529354 22 dbSNP
rs915748685 23 dbSNP
rs1038101433 25 dbSNP
rs1448308319 26 dbSNP
rs1373667040 29 dbSNP
rs1049005151 38 dbSNP
rs751537271 44 dbSNP
rs181069579 53 dbSNP
rs776404259 54 dbSNP
rs779972240 59 dbSNP
rs1291663041 62 dbSNP
rs1226244257 76 dbSNP
rs982834495 80 dbSNP
rs1484565201 84 dbSNP
rs755976514 87 dbSNP
rs1247814230 89 dbSNP
rs1447975711 91 dbSNP
rs538764371 104 dbSNP
rs1267163366 110 dbSNP
rs1419734367 112 dbSNP
rs1314749155 118 dbSNP
rs35361056 120 dbSNP
rs944445841 121 dbSNP
rs1448196453 124 dbSNP
rs1378853832 125 dbSNP
rs1470294318 136 dbSNP
rs922847290 149 dbSNP
rs977749646 151 dbSNP
rs1436956643 158 dbSNP
rs1379827642 161 dbSNP
rs966768504 163 dbSNP
rs1218862601 173 dbSNP
rs975642929 175 dbSNP
rs1299359927 179 dbSNP
rs990352050 192 dbSNP
rs1325688810 193 dbSNP
rs1329871669 194 dbSNP
rs964142634 197 dbSNP
rs1268014697 201 dbSNP
rs1210921919 219 dbSNP
rs1034458216 220 dbSNP
rs1002029131 228 dbSNP
rs1243020465 231 dbSNP
rs747190523 247 dbSNP
rs141066244 256 dbSNP
rs768601757 262 dbSNP
rs1480438950 270 dbSNP
rs1158970309 275 dbSNP
rs1409600288 277 dbSNP
rs1458728213 278 dbSNP
rs746974442 282 dbSNP
rs1031108701 283 dbSNP
rs1049035850 284 dbSNP
rs549954376 289 dbSNP
rs531710639 301 dbSNP
rs147739023 312 dbSNP
rs1405582559 318 dbSNP
rs1024196123 322 dbSNP
rs1247888662 324 dbSNP
rs1218968439 328 dbSNP
rs1012856533 329 dbSNP
rs565600813 352 dbSNP
rs1225965766 361 dbSNP
rs1285459607 364 dbSNP
rs911677803 365 dbSNP
rs1218930167 369 dbSNP
rs1286258766 371 dbSNP
rs1241382007 373 dbSNP
rs1356291852 374 dbSNP
rs1305572292 379 dbSNP
rs1490376722 379 dbSNP
rs1038196954 385 dbSNP
rs1223664245 386 dbSNP
rs1368406887 389 dbSNP
rs1473564907 397 dbSNP
rs1177653777 398 dbSNP
rs1412804491 402 dbSNP
rs1403348050 403 dbSNP
rs1162972380 405 dbSNP
rs1367739313 407 dbSNP
rs1425500280 413 dbSNP
rs1042514560 414 dbSNP
rs945093784 419 dbSNP
rs549283354 424 dbSNP
rs1280584660 430 dbSNP
rs990381784 435 dbSNP
rs941227231 438 dbSNP
rs190019605 463 dbSNP
rs1359764009 464 dbSNP
rs1365238832 465 dbSNP
rs1271874593 483 dbSNP
rs1182474596 490 dbSNP
rs1438974647 490 dbSNP
rs886853852 496 dbSNP
rs1421355710 509 dbSNP
rs1236778731 521 dbSNP
rs771917238 522 dbSNP
rs1358375092 523 dbSNP
rs1158307852 533 dbSNP
rs1183417258 535 dbSNP
rs1259024071 537 dbSNP
rs1215170154 538 dbSNP
rs1445533715 539 dbSNP
rs1433633785 540 dbSNP
rs1046842267 545 dbSNP
rs746073034 546 dbSNP
rs779241478 550 dbSNP
rs546594521 552 dbSNP
rs975615084 563 dbSNP
rs1330174992 564 dbSNP
rs527952325 568 dbSNP
rs185094431 571 dbSNP
rs915524974 582 dbSNP
rs560318248 583 dbSNP
rs868229865 589 dbSNP
rs1218327551 591 dbSNP
rs927476077 594 dbSNP
rs1383911754 597 dbSNP
rs1227216408 603 dbSNP
rs1489485147 609 dbSNP
rs545544697 624 dbSNP
rs1259266273 625 dbSNP
rs990036632 626 dbSNP
rs757250596 629 dbSNP
rs1215750037 645 dbSNP
rs7901097 647 dbSNP
rs1031497239 648 dbSNP
rs1304020241 649 dbSNP
rs982227448 654 dbSNP
rs1188202747 656 dbSNP
rs1464221058 656 dbSNP
rs1371504995 664 dbSNP
rs970693450 670 dbSNP
rs1344958727 671 dbSNP
rs1279143908 678 dbSNP
rs1413280207 681 dbSNP
rs564991821 686 dbSNP
rs1339191019 689 dbSNP
rs950708133 694 dbSNP
rs1027632333 717 dbSNP
rs752592502 720 dbSNP
rs1327867490 729 dbSNP
rs543082103 737 dbSNP
rs1227693294 740 dbSNP
rs1023653461 742 dbSNP
rs1273788365 751 dbSNP
rs1342191813 755 dbSNP
rs994757307 756 dbSNP
rs900384916 765 dbSNP
rs1012282716 770 dbSNP
rs1263549650 771 dbSNP
rs894378768 788 dbSNP
rs1016897965 789 dbSNP
rs1194097117 792 dbSNP
rs1246205299 799 dbSNP
rs1479473984 802 dbSNP
rs1179234767 809 dbSNP
rs1430671105 813 dbSNP
rs1457143938 814 dbSNP
rs1005788190 818 dbSNP
rs1338149905 823 dbSNP
rs370905351 824 dbSNP
rs576119843 825 dbSNP
rs554575355 826 dbSNP
rs193149038 828 dbSNP
rs1466341357 835 dbSNP
rs777746796 840 dbSNP
rs1047211102 845 dbSNP
rs758349626 850 dbSNP
rs1283346058 858 dbSNP
rs1328444810 861 dbSNP
rs933775427 864 dbSNP
rs1042154611 868 dbSNP
rs1468888951 871 dbSNP
rs1351043262 882 dbSNP
rs945097749 883 dbSNP
rs1289363079 885 dbSNP
rs190576098 889 dbSNP
rs1201730388 893 dbSNP
rs1053351356 894 dbSNP
rs1472582524 896 dbSNP
rs1039334339 897 dbSNP
rs927590216 906 dbSNP
rs1186355716 921 dbSNP
rs942395877 927 dbSNP
rs1454597349 935 dbSNP
rs980743043 935 dbSNP
rs367801804 945 dbSNP
rs552946896 958 dbSNP
rs1054076618 968 dbSNP
rs149992281 980 dbSNP
rs1202318977 985 dbSNP
rs1349324717 990 dbSNP
rs924137454 994 dbSNP
rs756622635 997 dbSNP
rs1407925548 998 dbSNP
rs983573108 1004 dbSNP
rs982574784 1012 dbSNP
rs1243855465 1017 dbSNP
rs1270278813 1022 dbSNP
rs1282178927 1028 dbSNP
rs950737364 1054 dbSNP
rs1258719676 1056 dbSNP
rs970788362 1057 dbSNP
rs1324954987 1059 dbSNP
rs1194623800 1070 dbSNP
rs916689747 1071 dbSNP
rs1420184915 1079 dbSNP
rs1295086444 1080 dbSNP
rs1383773887 1088 dbSNP
rs1446143016 1090 dbSNP
rs571678582 1107 dbSNP
rs1369433503 1110 dbSNP
rs994872380 1114 dbSNP
rs183894316 1122 dbSNP
rs191518084 1125 dbSNP
rs1397173016 1130 dbSNP
rs1395375377 1134 dbSNP
rs1310383065 1144 dbSNP
rs56389051 1168 dbSNP
rs1005468817 1184 dbSNP
rs951267088 1193 dbSNP
rs1009203010 1196 dbSNP
rs1341577197 1198 dbSNP
rs890315860 1199 dbSNP
rs1253121213 1203 dbSNP
rs1042576369 1207 dbSNP
rs1200373748 1208 dbSNP
rs567345489 1215 dbSNP
rs1183846495 1217 dbSNP
rs1389217823 1218 dbSNP
rs1426335715 1220 dbSNP
rs1451741542 1232 dbSNP
rs893591399 1242 dbSNP
rs1053466617 1244 dbSNP
rs1334528680 1251 dbSNP
rs998458449 1276 dbSNP
rs1408071495 1279 dbSNP
rs1221971947 1290 dbSNP
rs530010360 1296 dbSNP
rs900914720 1298 dbSNP
rs548921567 1301 dbSNP
rs1361577811 1304 dbSNP
rs527990207 1305 dbSNP
rs1297891944 1316 dbSNP
rs1308094217 1324 dbSNP
rs186662792 1325 dbSNP
rs1261761447 1328 dbSNP
rs1326251357 1329 dbSNP
rs565799299 1333 dbSNP
rs1247792332 1337 dbSNP
rs1484720493 1348 dbSNP
rs950324368 1350 dbSNP
rs917426656 1353 dbSNP
rs1261817736 1354 dbSNP
rs533552717 1356 dbSNP
rs983989404 1359 dbSNP
rs1174217772 1361 dbSNP
rs1431425271 1365 dbSNP
rs750010648 1372 dbSNP
rs929449995 1399 dbSNP
rs935608831 1401 dbSNP
rs116928332 1403 dbSNP
rs1046540588 1404 dbSNP
rs1182293782 1410 dbSNP
rs543524504 1420 dbSNP
rs964722457 1421 dbSNP
rs184216900 1442 dbSNP
rs560875179 1444 dbSNP
rs916656956 1449 dbSNP
rs1281416688 1452 dbSNP
rs990909150 1459 dbSNP
rs1284021852 1463 dbSNP
rs1315430847 1468 dbSNP
rs1217531914 1470 dbSNP
rs1251023826 1472 dbSNP
rs954754961 1476 dbSNP
rs963332533 1477 dbSNP
rs1196705745 1478 dbSNP
rs1270412003 1480 dbSNP
rs1020863504 1488 dbSNP
rs561450801 1491 dbSNP
rs542634874 1493 dbSNP
rs1903860 1498 dbSNP
rs554012658 1508 dbSNP
rs1424255044 1512 dbSNP
rs893623945 1519 dbSNP
rs1367462799 1530 dbSNP
rs544909412 1531 dbSNP
rs1279443095 1532 dbSNP
rs80005718 1534 dbSNP
rs531162210 1542 dbSNP
rs1001879832 1551 dbSNP
rs556057845 1554 dbSNP
rs1308124393 1558 dbSNP
rs1358372977 1565 dbSNP
rs191630598 1577 dbSNP
rs1293339214 1578 dbSNP
rs1490352134 1583 dbSNP
rs1204388098 1587 dbSNP
rs997974056 1603 dbSNP
rs1177637579 1617 dbSNP
rs965218352 1624 dbSNP
rs1245174298 1629 dbSNP
rs1377624633 1630 dbSNP
rs1017945496 1631 dbSNP
rs1412782078 1633 dbSNP
rs1006598237 1634 dbSNP
rs893439863 1651 dbSNP
rs1161828247 1663 dbSNP
rs1367559671 1669 dbSNP
rs1425322672 1675 dbSNP
rs1328247769 1678 dbSNP
rs567383999 1682 dbSNP
rs1444990198 1690 dbSNP
rs1299163294 1694 dbSNP
rs1382420801 1695 dbSNP
rs896088294 1700 dbSNP
rs139261693 1712 dbSNP
rs559242940 1717 dbSNP
rs776163150 1719 dbSNP
rs1213519951 1722 dbSNP
rs999621692 1726 dbSNP
rs902761339 1731 dbSNP
rs1439549459 1733 dbSNP
rs920733998 1735 dbSNP
rs1293766667 1747 dbSNP
rs1459062743 1748 dbSNP
rs973504572 1749 dbSNP
rs188576792 1753 dbSNP
rs1370595413 1757 dbSNP
rs943398070 1762 dbSNP
rs1047118121 1764 dbSNP
rs949497530 1789 dbSNP
rs895318892 1791 dbSNP
rs1167480043 1794 dbSNP
rs1417450699 1796 dbSNP
rs767495314 1806 dbSNP
rs1171654618 1813 dbSNP
rs1405852757 1827 dbSNP
rs1450850827 1832 dbSNP
rs1339069436 1841 dbSNP
rs954730785 1850 dbSNP
rs183638448 1855 dbSNP
rs1267910957 1861 dbSNP
rs942105320 1862 dbSNP
rs1181036341 1870 dbSNP
rs552063520 1875 dbSNP
rs760596593 1877 dbSNP
rs957878077 1891 dbSNP
rs1249819793 1893 dbSNP
rs1210691039 1899 dbSNP
rs1489558473 1900 dbSNP
rs1308847074 1902 dbSNP
rs1245031710 1903 dbSNP
rs1243526340 1907 dbSNP
rs983454661 1908 dbSNP
rs1311449475 1909 dbSNP
rs369197917 1911 dbSNP
rs1334668554 1912 dbSNP
rs865997618 1913 dbSNP
rs567129170 1915 dbSNP
rs113730541 1916 dbSNP
rs1179104228 1916 dbSNP
rs1429265001 1916 dbSNP
rs796254377 1916 dbSNP
rs1024716753 1917 dbSNP
rs772642013 1917 dbSNP
rs1491323518 1918 dbSNP
rs1327701628 1919 dbSNP
rs1363384851 1921 dbSNP
rs1282052248 1922 dbSNP
rs1013705888 1926 dbSNP
rs976647564 1927 dbSNP
rs1263547843 1929 dbSNP
rs1302141512 1930 dbSNP
rs1424491150 1931 dbSNP
rs1361504841 1933 dbSNP
rs1282364504 1934 dbSNP
rs1160801409 1935 dbSNP
rs1157167737 1936 dbSNP
rs1194558508 1936 dbSNP
rs1202140363 1936 dbSNP
rs1268247717 1936 dbSNP
rs1297995981 1936 dbSNP
rs1378601608 1936 dbSNP
rs1469898801 1936 dbSNP
rs1479750027 1936 dbSNP
rs5786795 1936 dbSNP
rs763209997 1936 dbSNP
rs1363106307 1937 dbSNP
rs1406706303 1937 dbSNP
rs1466960646 1937 dbSNP
rs1469015924 1937 dbSNP
rs1283806235 1938 dbSNP
rs1363320235 1940 dbSNP
rs569434957 1941 dbSNP
rs1281042947 1943 dbSNP
rs965146818 1949 dbSNP
rs550852908 1952 dbSNP
rs1291137741 1956 dbSNP
rs1489868508 1960 dbSNP
rs1222010232 1969 dbSNP
rs1225391385 1972 dbSNP
rs1018084283 1976 dbSNP
rs192064705 1977 dbSNP
rs1365902156 1989 dbSNP
rs188956302 2001 dbSNP
rs755493639 2003 dbSNP
rs1162465014 2006 dbSNP
rs771826993 2007 dbSNP
rs542671953 2012 dbSNP
rs527262178 2015 dbSNP
rs1293583068 2016 dbSNP
rs1349806992 2018 dbSNP
rs999190332 2032 dbSNP
rs902184994 2033 dbSNP
rs559860708 2035 dbSNP
rs1241189375 2041 dbSNP
rs1314566828 2047 dbSNP
rs1357518835 2052 dbSNP
rs943544607 2053 dbSNP
rs1266102724 2054 dbSNP
rs1480626397 2060 dbSNP
rs1194528755 2063 dbSNP
rs1013863440 2064 dbSNP
rs545310935 2067 dbSNP
rs1055287973 2068 dbSNP
rs1240942773 2077 dbSNP
rs1446052282 2081 dbSNP
rs913874411 2081 dbSNP
rs573588280 2084 dbSNP
rs1371936763 2091 dbSNP
rs1460407598 2096 dbSNP
rs150816814 2100 dbSNP
rs1341552790 2104 dbSNP
rs1320630706 2110 dbSNP
rs887865832 2122 dbSNP
rs1451705389 2123 dbSNP
rs556335233 2127 dbSNP
rs1399294889 2128 dbSNP
rs1313551862 2131 dbSNP
rs1048312669 2134 dbSNP
rs1306926611 2135 dbSNP
rs957910603 2141 dbSNP
rs1253551127 2142 dbSNP
rs1173671772 2147 dbSNP
rs373364249 2152 dbSNP
rs923269796 2153 dbSNP
rs1182013418 2156 dbSNP
rs374986491 2157 dbSNP
rs548514172 2158 dbSNP
rs141469860 2163 dbSNP
rs1469221851 2164 dbSNP
rs543307510 2166 dbSNP
rs1174067559 2169 dbSNP
rs911160271 2169 dbSNP
rs980604833 2172 dbSNP
rs1467782798 2185 dbSNP
rs1303608499 2188 dbSNP
rs1190823236 2191 dbSNP
rs78839565 2195 dbSNP
rs140073260 2196 dbSNP
rs533991936 2197 dbSNP
rs1025167074 2198 dbSNP
rs566878155 2201 dbSNP
rs749476311 2202 dbSNP
rs1013322063 2203 dbSNP
rs1210413519 2207 dbSNP
rs60373064 2213 dbSNP
rs966379121 2214 dbSNP
rs1206442731 2223 dbSNP
rs1024659060 2225 dbSNP
rs1263255708 2226 dbSNP
rs1218882903 2227 dbSNP
rs530195013 2229 dbSNP
rs1197112865 2249 dbSNP
rs1431207742 2251 dbSNP
rs183136843 2257 dbSNP
rs748659967 2259 dbSNP
rs1033971383 2261 dbSNP
rs899452245 2268 dbSNP
rs1300180565 2273 dbSNP
rs1326200448 2278 dbSNP
rs781774241 2281 dbSNP
rs1404913166 2286 dbSNP
rs1335468383 2291 dbSNP
rs1454989531 2300 dbSNP
rs1037955781 2303 dbSNP
rs1006381812 2306 dbSNP
rs1314820267 2307 dbSNP
rs1241792092 2310 dbSNP
rs887953117 2311 dbSNP
rs889278788 2317 dbSNP
rs1047769480 2318 dbSNP
rs1220196264 2320 dbSNP
rs1271030116 2322 dbSNP
rs1488748833 2332 dbSNP
rs371100979 2335 dbSNP
rs994009741 2339 dbSNP
rs933395736 2342 dbSNP
rs189765659 2348 dbSNP
rs184914771 2349 dbSNP
rs536035434 2358 dbSNP
rs181205569 2359 dbSNP
rs1250027548 2372 dbSNP
rs1421968140 2375 dbSNP
rs911127789 2377 dbSNP
rs1301336046 2379 dbSNP
rs1352182256 2384 dbSNP
rs1049637350 2388 dbSNP
rs936478022 2389 dbSNP
rs1241914489 2393 dbSNP
rs925240268 2404 dbSNP
rs867492561 2413 dbSNP
rs1243192451 2415 dbSNP
rs1291403424 2415 dbSNP
rs75742574 2418 dbSNP
rs1474968095 2419 dbSNP
rs1481463289 2420 dbSNP
rs966848462 2425 dbSNP
rs1178995161 2435 dbSNP
rs917697756 2436 dbSNP
rs1444231893 2445 dbSNP
rs1185378071 2448 dbSNP
rs969654175 2450 dbSNP
rs991822493 2453 dbSNP
rs1406463497 2456 dbSNP
rs1459885766 2459 dbSNP
rs1353146236 2462 dbSNP
rs751899970 2472 dbSNP
rs1242426894 2473 dbSNP
rs1033897702 2478 dbSNP
rs77542800 2483 dbSNP
rs952224634 2484 dbSNP
rs1458707781 2488 dbSNP
rs1285466139 2495 dbSNP
rs1026913967 2517 dbSNP
rs560896889 2524 dbSNP
rs901931710 2526 dbSNP
rs1040468246 2529 dbSNP
rs1339147245 2537 dbSNP
rs560097889 2544 dbSNP
rs1007479735 2552 dbSNP
rs995213590 2555 dbSNP
rs1285116177 2557 dbSNP
rs551051140 2558 dbSNP
rs962352944 2563 dbSNP
rs1239315693 2568 dbSNP
rs533300514 2574 dbSNP
rs1381287951 2585 dbSNP
rs557052599 2586 dbSNP
rs1447699533 2589 dbSNP
rs1016555504 2595 dbSNP
rs1049641885 2605 dbSNP
rs1327107893 2608 dbSNP
rs936597489 2609 dbSNP
rs1030459460 2616 dbSNP
rs1414282729 2628 dbSNP
rs373583523 2630 dbSNP
rs562639933 2643 dbSNP
rs1340676218 2646 dbSNP
rs1429460540 2654 dbSNP
rs1042594288 2655 dbSNP
rs536723454 2656 dbSNP
rs892585249 2657 dbSNP
rs1442509168 2668 dbSNP
rs753496923 2669 dbSNP
rs1282400765 2670 dbSNP
rs936697394 2674 dbSNP
rs544033033 2680 dbSNP
rs903848459 2683 dbSNP
rs1281055837 2690 dbSNP
rs917666605 2697 dbSNP
rs1230611556 2710 dbSNP
rs1261112204 2716 dbSNP
rs1479098653 2724 dbSNP
rs947958947 2725 dbSNP
rs1429067836 2726 dbSNP
rs991915979 2734 dbSNP
rs1203420335 2745 dbSNP
rs1174642178 2748 dbSNP
rs958989747 2753 dbSNP
rs926297153 2754 dbSNP
rs1315628107 2764 dbSNP
rs992041763 2766 dbSNP
rs1361821513 2771 dbSNP
rs1400569193 2772 dbSNP
rs76631158 2778 dbSNP
rs12571737 2794 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HEK293S
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in GSM1084064. RNA binding protein: AGO2. Condition:CLIP_noemetine_AbnovaAb HITS-CLIP data was present in GSM1084072. RNA binding protein: AGO2. Condition:CLIP_nohippuristanol_rep1_AbnovaAb HITS-CLIP data was present in GSM1084073. RNA binding protein: AGO2. Condition:CLIP_hippuristanol_rep1_AbnovaAb HITS-CLIP data was present in GSM1084077. RNA binding protein: AGO2. Condition:CLIP_hippuristanol_rep1_SigmaAb ...

- Karginov FV; Hannon GJ, 2013, Genes & development.

Article - Karginov FV; Hannon GJ
- Genes & development, 2013
When adapting to environmental stress, cells attenuate and reprogram their translational output. In part, these altered translation profiles are established through changes in the interactions between RNA-binding proteins and mRNAs. The Argonaute 2 (Ago2)/microRNA (miRNA) machinery has been shown to participate in stress-induced translational up-regulation of a particular mRNA, CAT-1; however, a detailed, transcriptome-wide understanding of the involvement of Ago2 in the process has been lacking. Here, we profiled the overall changes in Ago2-mRNA interactions upon arsenite stress by cross-linking immunoprecipitation (CLIP) followed by high-throughput sequencing (CLIP-seq). Ago2 displayed a significant remodeling of its transcript occupancy, with the majority of 3' untranslated region (UTR) and coding sequence (CDS) sites exhibiting stronger interaction. Interestingly, target sites that were destined for release from Ago2 upon stress were depleted in miRNA complementarity signatures, suggesting an alternative mode of interaction. To compare the changes in Ago2-binding patterns across transcripts with changes in their translational states, we measured mRNA profiles on ribosome/polysome gradients by RNA sequencing (RNA-seq). Increased Ago2 occupancy correlated with stronger repression of translation for those mRNAs, as evidenced by a shift toward lighter gradient fractions upon stress, while release of Ago2 was associated with the limited number of transcripts that remained translated. Taken together, these data point to a role for Ago2 and the mammalian miRNAs in mediating the translational component of the stress response.
LinkOut: [PMID: 23824327]
CLIP-seq Support 1 for dataset GSM4903833
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_a
Location of target site NM_001126049 | 3UTR | AGUGCAGUGGCAUGAUCUCGGUUCACUGCA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM4903836
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / 124_TD_21_a
Location of target site NM_001126049 | 3UTR | UUGAGACGGAGUCUCACAGGCUGGAGUGCAGUGGCAUG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 3 for dataset GSM4903837
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / 124_TD_21_b
Location of target site NM_001126049 | 3UTR | AGGCUGGAGUGCAGUGGCAUGAUCUCGGUUCACUGCAACCUCUGCCUCCCA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 4 for dataset GSM4903838
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / 124_TD_21_c
Location of target site NM_001126049 | 3UTR | CUCACAGGCUGGAGUGCAGUGGCAUG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 5 for dataset GSM1084064
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_noemetine_AbnovaAb
Location of target site ENST00000445946.3 | 3UTR | CUCACAGGCUGGAGUGCAGU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
CLIP-seq Support 6 for dataset GSM1084072
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_nohippuristanol_rep1_AbnovaAb
Location of target site ENST00000445946.3 | 3UTR | CUCACAGGCUGGAGUGCAGUGGC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
CLIP-seq Support 7 for dataset GSM1084073
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_hippuristanol_rep1_AbnovaAb
Location of target site ENST00000445946.3 | 3UTR | CUCACAGGCUGGAGUGCAGUGGC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
CLIP-seq Support 8 for dataset GSM1084077
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_hippuristanol_rep1_SigmaAb
Location of target site ENST00000445946.3 | 3UTR | CACAGGCUGGAGUGCAGUGGCAU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
296 hsa-miR-4793-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT092332 EDEM1 ER degradation enhancing alpha-mannosidase like protein 1 2 6
MIRT131237 ATG2A autophagy related 2A 2 2
MIRT145926 ANKFY1 ankyrin repeat and FYVE domain containing 1 2 2
MIRT206559 SOCS5 suppressor of cytokine signaling 5 2 8
MIRT226455 TP53INP1 tumor protein p53 inducible nuclear protein 1 2 2
MIRT337662 ZNF695 zinc finger protein 695 2 2
MIRT405828 SIX4 SIX homeobox 4 2 2
MIRT455113 RILPL1 Rab interacting lysosomal protein like 1 2 2
MIRT456756 TMEM239 transmembrane protein 239 2 4
MIRT457974 RGS9BP regulator of G protein signaling 9 binding protein 2 2
MIRT458173 LYRM4 LYR motif containing 4 2 4
MIRT458245 SLC9A7 solute carrier family 9 member A7 2 2
MIRT466145 TMEM120B transmembrane protein 120B 2 2
MIRT474981 KATNAL1 katanin catalytic subunit A1 like 1 2 2
MIRT475601 HMGB2 high mobility group box 2 2 4
MIRT480759 BMP3 bone morphogenetic protein 3 2 4
MIRT481156 AVL9 AVL9 cell migration associated 2 2
MIRT482155 AK2 adenylate kinase 2 2 2
MIRT488386 VAV3 vav guanine nucleotide exchange factor 3 2 6
MIRT496575 KIF18B kinesin family member 18B 2 2
MIRT498411 TXNDC16 thioredoxin domain containing 16 2 4
MIRT504547 ZNF417 zinc finger protein 417 2 6
MIRT505417 TCF7L2 transcription factor 7 like 2 2 2
MIRT509349 ALDH9A1 aldehyde dehydrogenase 9 family member A1 2 6
MIRT512164 CD164 CD164 molecule 2 6
MIRT517238 PRIM1 DNA primase subunit 1 2 2
MIRT518671 KCNMB1 potassium calcium-activated channel subfamily M regulatory beta subunit 1 2 2
MIRT519298 MLH1 mutL homolog 1 2 2
MIRT523662 FOSL2 FOS like 2, AP-1 transcription factor subunit 2 2
MIRT525452 GPATCH2L G-patch domain containing 2 like 2 2
MIRT539847 ZNF766 zinc finger protein 766 2 2
MIRT540076 SSH3 slingshot protein phosphatase 3 2 2
MIRT540320 PIGR polymeric immunoglobulin receptor 2 2
MIRT540548 MAGI3 membrane associated guanylate kinase, WW and PDZ domain containing 3 2 2
MIRT540759 UTP6 UTP6, small subunit processome component 2 2
MIRT541545 HIATL2 major facilitator superfamily domain containing 14C 2 2
MIRT541553 SLC35E1 solute carrier family 35 member E1 2 2
MIRT541666 ATP8B3 ATPase phospholipid transporting 8B3 2 4
MIRT541722 TFDP2 transcription factor Dp-2 2 2
MIRT541800 DUSP28 dual specificity phosphatase 28 2 2
MIRT541816 SMU1 DNA replication regulator and spliceosomal factor 2 2
MIRT541907 VWA7 von Willebrand factor A domain containing 7 2 2
MIRT542154 UGDH UDP-glucose 6-dehydrogenase 2 2
MIRT542207 C14orf142 GON7, KEOPS complex subunit homolog 2 2
MIRT542233 FUT9 fucosyltransferase 9 2 2
MIRT542320 SERPING1 serpin family G member 1 2 2
MIRT542369 PAICS phosphoribosylaminoimidazole carboxylase and phosphoribosylaminoimidazolesuccinocarboxamide synthase 2 2
MIRT542476 APOC3 apolipoprotein C3 2 2
MIRT542641 TIMM8A translocase of inner mitochondrial membrane 8A 2 2
MIRT542660 TAF11 TATA-box binding protein associated factor 11 2 2
MIRT542749 PRRG4 proline rich and Gla domain 4 2 4
MIRT542789 PLEKHA3 pleckstrin homology domain containing A3 2 2
MIRT545442 FGFRL1 fibroblast growth factor receptor like 1 2 2
MIRT546206 TOR1AIP2 torsin 1A interacting protein 2 2 2
MIRT552270 RAB3D RAB3D, member RAS oncogene family 2 2
MIRT552655 ZADH2 zinc binding alcohol dehydrogenase domain containing 2 2 2
MIRT554134 SMARCA5 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 2 2
MIRT556795 KIAA1958 KIAA1958 2 2
MIRT564762 ZHX3 zinc fingers and homeoboxes 3 2 2
MIRT569428 STX7 syntaxin 7 2 2
MIRT573245 ZBTB46 zinc finger and BTB domain containing 46 2 2
MIRT607390 LANCL3 LanC like 3 2 2
MIRT607430 NOTCH2NL notch 2 N-terminal like 2 2
MIRT607452 ZNF543 zinc finger protein 543 2 2
MIRT607580 TANGO2 transport and golgi organization 2 homolog 2 2
MIRT607748 ANGPT4 angiopoietin 4 2 2
MIRT607907 SPRYD4 SPRY domain containing 4 2 2
MIRT608703 GMPR guanosine monophosphate reductase 2 2
MIRT612127 NDUFA10 NADH:ubiquinone oxidoreductase subunit A10 2 2
MIRT612786 MAP3K9 mitogen-activated protein kinase kinase kinase 9 2 4
MIRT616692 LPL lipoprotein lipase 2 2
MIRT617045 ZNF610 zinc finger protein 610 2 2
MIRT617091 ZNF43 zinc finger protein 43 2 2
MIRT617314 MBOAT1 membrane bound O-acyltransferase domain containing 1 2 2
MIRT617355 MELK maternal embryonic leucine zipper kinase 2 2
MIRT617486 ALG9 ALG9, alpha-1,2-mannosyltransferase 2 2
MIRT617579 NDUFB5 NADH:ubiquinone oxidoreductase subunit B5 2 2
MIRT617669 RSRC1 arginine and serine rich coiled-coil 1 2 2
MIRT617722 TRAPPC2 trafficking protein particle complex 2 2 4
MIRT617893 PTCHD3 patched domain containing 3 2 2
MIRT617982 ZNF234 zinc finger protein 234 2 4
MIRT618434 MYLK3 myosin light chain kinase 3 2 4
MIRT618732 HIST1H2AH histone cluster 1 H2A family member h 2 2
MIRT619045 CASS4 Cas scaffolding protein family member 4 2 2
MIRT619573 ATAT1 alpha tubulin acetyltransferase 1 2 4
MIRT619671 CYP1A2 cytochrome P450 family 1 subfamily A member 2 2 2
MIRT619887 ABHD17B abhydrolase domain containing 17B 2 2
MIRT620519 SNRPD1 small nuclear ribonucleoprotein D1 polypeptide 2 4
MIRT620535 AVPR1A arginine vasopressin receptor 1A 2 2
MIRT620996 C19orf52 translocase of inner mitochondrial membrane 29 2 2
MIRT621304 YIPF4 Yip1 domain family member 4 2 2
MIRT622086 SRPX2 sushi repeat containing protein, X-linked 2 2 2
MIRT622168 SMYD1 SET and MYND domain containing 1 2 2
MIRT622543 PXMP4 peroxisomal membrane protein 4 2 2
MIRT622761 PGM3 phosphoglucomutase 3 2 2
MIRT622885 PDCL3 phosducin like 3 2 4
MIRT623130 NDUFC2 NADH:ubiquinone oxidoreductase subunit C2 2 2
MIRT624840 ACAP2 ArfGAP with coiled-coil, ankyrin repeat and PH domains 2 2 2
MIRT625047 MBD3 methyl-CpG binding domain protein 3 2 2
MIRT625059 ZNF556 zinc finger protein 556 2 2
MIRT625508 PPAPDC1A phospholipid phosphatase 4 2 2
MIRT625573 ANKRD42 ankyrin repeat domain 42 2 2
MIRT626133 SNRNP48 small nuclear ribonucleoprotein U11/U12 subunit 48 2 2
MIRT626327 LRTOMT leucine rich transmembrane and O-methyltransferase domain containing 2 2
MIRT626765 CDC14B cell division cycle 14B 2 2
MIRT626798 CSE1L chromosome segregation 1 like 2 2
MIRT627212 ZC3H12B zinc finger CCCH-type containing 12B 2 2
MIRT627225 ZBTB8B zinc finger and BTB domain containing 8B 2 4
MIRT627256 XKR4 XK related 4 2 2
MIRT628190 GATSL2 cytosolic arginine sensor for mTORC1 subunit 2 2 2
MIRT628466 AHSA2 activator of HSP90 ATPase homolog 2 2 2
MIRT628627 CCT4 chaperonin containing TCP1 subunit 4 2 2
MIRT629040 KLLN killin, p53-regulated DNA replication inhibitor 2 2
MIRT630847 ACACB acetyl-CoA carboxylase beta 2 2
MIRT631721 RNASEH2B ribonuclease H2 subunit B 2 2
MIRT632264 USP1 ubiquitin specific peptidase 1 2 4
MIRT632571 POLQ DNA polymerase theta 2 2
MIRT633992 SLC35E2 solute carrier family 35 member E2 2 2
MIRT635211 ZNF286A zinc finger protein 286A 2 4
MIRT635249 ELOVL6 ELOVL fatty acid elongase 6 2 4
MIRT635261 FBXL20 F-box and leucine rich repeat protein 20 2 2
MIRT635283 GK5 glycerol kinase 5 (putative) 2 2
MIRT635663 DTX3L deltex E3 ubiquitin ligase 3L 2 2
MIRT636251 SEC63 SEC63 homolog, protein translocation regulator 2 2
MIRT636564 EPB41 erythrocyte membrane protein band 4.1 2 2
MIRT636814 TBC1D24 TBC1 domain family member 24 2 2
MIRT637358 ZNF460 zinc finger protein 460 2 2
MIRT637473 DEFB105B defensin beta 105B 2 4
MIRT637505 DEFB105A defensin beta 105A 2 4
MIRT637861 SC5D sterol-C5-desaturase 2 2
MIRT638080 ZNF652 zinc finger protein 652 2 2
MIRT638096 ZBTB8A zinc finger and BTB domain containing 8A 2 2
MIRT638174 TMED4 transmembrane p24 trafficking protein 4 2 2
MIRT638201 TAF13 TATA-box binding protein associated factor 13 2 2
MIRT638278 SH2B3 SH2B adaptor protein 3 2 2
MIRT638714 FUT11 fucosyltransferase 11 2 2
MIRT638852 CLMP CXADR like membrane protein 2 2
MIRT639815 TMED8 transmembrane p24 trafficking protein family member 8 2 2
MIRT640879 ENTPD1 ectonucleoside triphosphate diphosphohydrolase 1 2 2
MIRT640937 FAM129A family with sequence similarity 129 member A 2 2
MIRT640971 ORAI2 ORAI calcium release-activated calcium modulator 2 2 2
MIRT641642 GNAZ G protein subunit alpha z 2 2
MIRT641931 SLC25A16 solute carrier family 25 member 16 2 2
MIRT642136 CRY2 cryptochrome circadian clock 2 2 2
MIRT643199 JAK3 Janus kinase 3 2 2
MIRT643256 ZNF566 zinc finger protein 566 2 2
MIRT643378 TRIM16L tripartite motif containing 16 like 2 2
MIRT643683 AMER3 APC membrane recruitment protein 3 2 2
MIRT643728 MCMDC2 minichromosome maintenance domain containing 2 2 2
MIRT643949 CCDC141 coiled-coil domain containing 141 2 2
MIRT644915 SERF1B small EDRK-rich factor 1B 2 2
MIRT645163 NOL9 nucleolar protein 9 2 2
MIRT645547 PABPC1L2B poly(A) binding protein cytoplasmic 1 like 2B 2 2
MIRT645550 PABPC1L2A poly(A) binding protein cytoplasmic 1 like 2A 2 2
MIRT645572 TACR2 tachykinin receptor 2 2 2
MIRT646697 SERF1A small EDRK-rich factor 1A 2 2
MIRT647806 FRMD8 FERM domain containing 8 2 2
MIRT647903 CIRH1A UTP4, small subunit processome component 2 2
MIRT648978 ACAD8 acyl-CoA dehydrogenase family member 8 2 2
MIRT649907 SLFN12L schlafen family member 12 like 2 2
MIRT650224 SIGLEC9 sialic acid binding Ig like lectin 9 2 4
MIRT651880 UGGT1 UDP-glucose glycoprotein glucosyltransferase 1 2 2
MIRT651935 UBN1 ubinuclein 1 2 2
MIRT652839 TACO1 translational activator of cytochrome c oxidase I 2 2
MIRT652994 SUGT1 SGT1 homolog, MIS12 kinetochore complex assembly cochaperone 2 2
MIRT654800 PRICKLE1 prickle planar cell polarity protein 1 2 2
MIRT655591 OTUD7B OTU deubiquitinase 7B 2 2
MIRT658760 EIF4EBP2 eukaryotic translation initiation factor 4E binding protein 2 2 2
MIRT659358 CRKL CRK like proto-oncogene, adaptor protein 2 2
MIRT660717 AMER1 APC membrane recruitment protein 1 2 2
MIRT660737 ALG14 ALG14, UDP-N-acetylglucosaminyltransferase subunit 2 2
MIRT661088 TMEM145 transmembrane protein 145 2 2
MIRT661176 S1PR2 sphingosine-1-phosphate receptor 2 2 2
MIRT662005 ZNF445 zinc finger protein 445 2 2
MIRT662178 KIAA1210 KIAA1210 2 2
MIRT662270 OR51E2 olfactory receptor family 51 subfamily E member 2 2 2
MIRT663046 SLC16A4 solute carrier family 16 member 4 2 2
MIRT663476 POFUT2 protein O-fucosyltransferase 2 2 2
MIRT664039 RPL27A ribosomal protein L27a 2 2
MIRT664096 ZDHHC24 zinc finger DHHC-type containing 24 2 2
MIRT664109 FUT1 fucosyltransferase 1 (H blood group) 2 2
MIRT664317 CD209 CD209 molecule 2 2
MIRT664455 BBS5 Bardet-Biedl syndrome 5 2 2
MIRT664595 HSD17B12 hydroxysteroid 17-beta dehydrogenase 12 2 4
MIRT664694 DBF4 DBF4 zinc finger 2 2
MIRT665162 SF3A1 splicing factor 3a subunit 1 2 2
MIRT665214 RBM22 RNA binding motif protein 22 2 2
MIRT665254 ZNF286B zinc finger protein 286B 2 2
MIRT665268 ZFP69B ZFP69 zinc finger protein B 2 2
MIRT665606 TTC39A tetratricopeptide repeat domain 39A 2 2
MIRT665830 TIMELESS timeless circadian clock 2 2
MIRT666201 SMARCC1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 1 2 2
MIRT666546 RNF115 ring finger protein 115 2 2
MIRT666602 REEP3 receptor accessory protein 3 2 2
MIRT666862 POU2F3 POU class 2 homeobox 3 2 4
MIRT666886 POLA2 DNA polymerase alpha 2, accessory subunit 2 2
MIRT667158 NRXN3 neurexin 3 2 2
MIRT667252 NEK9 NIMA related kinase 9 2 2
MIRT667419 MFSD2A major facilitator superfamily domain containing 2A 2 2
MIRT667434 METTL8 methyltransferase like 8 2 2
MIRT668023 HAUS3 HAUS augmin like complex subunit 3 2 2
MIRT668062 GPR75 G protein-coupled receptor 75 2 2
MIRT668070 GOSR1 golgi SNAP receptor complex member 1 2 2
MIRT668607 EHD4 EH domain containing 4 2 4
MIRT668694 DNAL1 dynein axonemal light chain 1 2 2
MIRT668782 DAAM1 dishevelled associated activator of morphogenesis 1 2 2
MIRT669037 CHEK1 checkpoint kinase 1 2 2
MIRT669044 CHAF1B chromatin assembly factor 1 subunit B 2 4
MIRT669156 CCNG1 cyclin G1 2 2
MIRT670090 ABCF3 ATP binding cassette subfamily F member 3 2 4
MIRT670206 SLC24A4 solute carrier family 24 member 4 2 2
MIRT672488 FUS FUS RNA binding protein 2 2
MIRT673830 SLC11A2 solute carrier family 11 member 2 2 2
MIRT675481 VEGFC vascular endothelial growth factor C 2 2
MIRT675634 HACE1 HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1 2 2
MIRT677913 HIST1H2BN histone cluster 1 H2B family member n 2 2
MIRT678420 ANKRD36 ankyrin repeat domain 36 2 2
MIRT678626 OLFML2A olfactomedin like 2A 2 2
MIRT678791 NUPL2 nucleoporin like 2 2 2
MIRT679561 LIN9 lin-9 DREAM MuvB core complex component 2 2
MIRT680743 CA5B carbonic anhydrase 5B 2 2
MIRT682481 LIX1L limb and CNS expressed 1 like 2 4
MIRT682701 PSMD9 proteasome 26S subunit, non-ATPase 9 2 2
MIRT682759 MDM2 MDM2 proto-oncogene 2 2
MIRT682811 TMCO1 transmembrane and coiled-coil domains 1 2 2
MIRT682847 DNAJC28 DnaJ heat shock protein family (Hsp40) member C28 2 2
MIRT682896 XIAP X-linked inhibitor of apoptosis 2 2
MIRT682916 FAM73A mitoguardin 1 2 2
MIRT682935 ZNF292 zinc finger protein 292 2 2
MIRT682953 RPL12 ribosomal protein L12 2 2
MIRT682972 NF2 neurofibromin 2 2 2
MIRT683033 SUSD5 sushi domain containing 5 2 2
MIRT683081 A1BG alpha-1-B glycoprotein 2 2
MIRT683105 TIMM10B translocase of inner mitochondrial membrane 10B 2 2
MIRT686640 TMEM184C transmembrane protein 184C 2 2
MIRT687444 NR3C1 nuclear receptor subfamily 3 group C member 1 2 2
MIRT688401 EMC8 ER membrane protein complex subunit 8 2 2
MIRT688886 C3orf70 chromosome 3 open reading frame 70 2 2
MIRT689148 IRAK1BP1 interleukin 1 receptor associated kinase 1 binding protein 1 2 2
MIRT689234 RPS19 ribosomal protein S19 2 2
MIRT689306 C5AR2 complement component 5a receptor 2 2 2
MIRT689364 ZNF101 zinc finger protein 101 2 2
MIRT689498 SCARF1 scavenger receptor class F member 1 2 2
MIRT689655 RBM23 RNA binding motif protein 23 2 2
MIRT689897 SOD2 superoxide dismutase 2 2 2
MIRT690150 PPIL6 peptidylprolyl isomerase like 6 2 2
MIRT690601 C17orf105 chromosome 17 open reading frame 105 2 2
MIRT690805 FAHD1 fumarylacetoacetate hydrolase domain containing 1 2 2
MIRT690946 GLG1 golgi glycoprotein 1 2 2
MIRT691388 ATP13A4 ATPase 13A4 2 2
MIRT691408 DNA2 DNA replication helicase/nuclease 2 2 2
MIRT692175 LRRC3C leucine rich repeat containing 3C 2 2
MIRT692235 ALDH1B1 aldehyde dehydrogenase 1 family member B1 2 2
MIRT693283 GINM1 glycoprotein integral membrane 1 2 2
MIRT693439 TPGS1 tubulin polyglutamylase complex subunit 1 2 2
MIRT693460 HIST1H2AG histone cluster 1 H2A family member g 2 2
MIRT693768 ZNF383 zinc finger protein 383 2 2
MIRT694018 PPIL4 peptidylprolyl isomerase like 4 2 2
MIRT694236 ZNF749 zinc finger protein 749 2 2
MIRT694321 NLRP9 NLR family pyrin domain containing 9 2 2
MIRT694347 CHST6 carbohydrate sulfotransferase 6 2 2
MIRT694430 MCF2L2 MCF.2 cell line derived transforming sequence-like 2 2 2
MIRT695763 WDR35 WD repeat domain 35 2 2
MIRT696167 TIPIN TIMELESS interacting protein 2 2
MIRT696417 DOCK7 dedicator of cytokinesis 7 2 2
MIRT696543 C3 complement C3 2 2
MIRT696998 CCDC80 coiled-coil domain containing 80 2 2
MIRT697232 ZYG11A zyg-11 family member A, cell cycle regulator 2 2
MIRT697806 UBXN2A UBX domain protein 2A 2 2
MIRT697944 TVP23C trans-golgi network vesicle protein 23 homolog C 2 2
MIRT698161 TNFRSF13C TNF receptor superfamily member 13C 2 2
MIRT698778 STK4 serine/threonine kinase 4 2 2
MIRT700259 RBM12B RNA binding motif protein 12B 2 2
MIRT700970 PDK3 pyruvate dehydrogenase kinase 3 2 2
MIRT701251 NUP35 nucleoporin 35 2 2
MIRT701607 MYPN myopalladin 2 2
MIRT702457 KIAA1467 family with sequence similarity 234 member B 2 2
MIRT702613 ITPRIPL2 inositol 1,4,5-trisphosphate receptor interacting protein like 2 2 2
MIRT702691 IRGQ immunity related GTPase Q 2 2
MIRT702934 HMX3 H6 family homeobox 3 2 2
MIRT702991 HERPUD2 HERPUD family member 2 2 2
MIRT703148 GPR137C G protein-coupled receptor 137C 2 2
MIRT703980 EMC1 ER membrane protein complex subunit 1 2 2
MIRT704569 CLPX caseinolytic mitochondrial matrix peptidase chaperone subunit 2 2
MIRT705065 C4orf32 family with sequence similarity 241 member A 2 2
MIRT705447 ATL2 atlastin GTPase 2 2 2
MIRT705856 AFF3 AF4/FMR2 family member 3 2 2
MIRT705886 ADIPOR2 adiponectin receptor 2 2 2
MIRT714370 HP1BP3 heterochromatin protein 1 binding protein 3 2 2
MIRT715784 PHF12 PHD finger protein 12 2 2
MIRT715864 KIAA0101 PCNA clamp associated factor 2 2
MIRT715947 NUP93 nucleoporin 93 2 2
MIRT716132 THOC5 THO complex 5 2 2
MIRT717084 EBF4 early B-cell factor 4 2 2
MIRT725424 HNRNPA3 heterogeneous nuclear ribonucleoprotein A3 2 2
MIRT736091 GREM1 gremlin 1, DAN family BMP antagonist 3 0
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-4793 Dabrafenib 44462760 NSC764134 approved sensitive cell line (A375)
hsa-miR-4793-3p Gefitinib 123631 NSC715055 approved sensitive cell line (HCC827)
hsa-miR-4793-3p Doxorubicin 31703 NSC123127 approved resistant cell line (BAS)
hsa-miR-4793-3p Osimertinib 71496458 NSC779217 approved sensitive cell line (H1975)

Error report submission