pre-miRNA Information
pre-miRNA hsa-mir-3133   
Genomic Coordinates chr2: 241477905 - 241477982
Description Homo sapiens miR-3133 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-3133
Sequence 10| UAAAGAACUCUUAAAACCCAAU |31
Evidence Experimental
Experiments Illumina
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1030052469 1 dbSNP
rs955010137 12 dbSNP
Putative Targets

miRNA Expression profile
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol GTPBP8   
Synonyms HSPC135
Description GTP binding protein 8 (putative)
Transcript NM_014170   
Other Transcripts NM_138485   
Expression
Putative miRNA Targets on GTPBP8
3'UTR of GTPBP8
(miRNA target sites are highlighted)
>GTPBP8|NM_014170|3'UTR
   1 TGGTTCCCGGTTTAGCTGAAGATTCAAAAAAAAAAAAAAAAGCTTTATGCTAACTGGAGTTAAATACCTAGAAGAATTTC
  81 AACATTGTTTTAAATGTTGTGCATCTGTAACTTCAGGAGGATCACTTGAGCTTTAAAACCTGTGCCTTCTCGAAACAAGA
 161 ATTTGTGCCTGAGGTGAAAAAAGTTTGTAAGTTATTGAATTATGGTGTTCATTAGAACAGCTACTAGCTGATTCCCCTAT
 241 TTTAACAAACTGACAAGAGCACATCCATAAAATGAAAACCTGTTACAACTATGTACAGAAGGGTTTGACGTTTTATTGGG
 321 CTTTTGTCTTTTAAAGAATATGTCTACTATGGGTATTTTTTTTTTAAATGTTAAAATGGGCTAGGTAAAAGGGGGCTGCT
 401 TTTCTGTTAAGCATCGATAGGTAAGTTGATGGATAAAAGTTACTATGTAAGCCTAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' uaACCCAAAAUUCUCAAGAAAu 5'
            ||||| ||     ||:||| 
Target 5' taTGGGTATT-----TTTTTTt 3'
348 - 364 114.00 -5.50
2
miRNA  3' uaaCCCAAAAUUCU-CAAGAAAu 5'
             ||||||   || |||:| | 
Target 5' gaaGGGTTT---GACGTTTTATt 3'
298 - 317 112.00 -7.62
3
miRNA  3' uaACCCAA---AAUU---CUC-AAGAAAu 5'
            |||| |   | ||   |:| | |||| 
Target 5' aaTGGGCTAGGTAAAAGGGGGCTGCTTTt 3'
375 - 403 92.00 -8.20
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN32053767 7 COSMIC
COSN30522779 9 COSMIC
COSN20098858 42 COSMIC
COSN30148990 83 COSMIC
COSN30190693 106 COSMIC
COSN32056926 357 COSMIC
COSN20098864 366 COSMIC
COSN6425290 366 COSMIC
COSN1265342 367 COSMIC
COSN30004164 794 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs747039158 2 dbSNP
rs1272273403 3 dbSNP
rs771293416 4 dbSNP
rs1327689803 7 dbSNP
rs1188244315 8 dbSNP
rs375553882 9 dbSNP
rs759886445 10 dbSNP
rs199798570 11 dbSNP
rs1390201741 16 dbSNP
rs1450994329 19 dbSNP
rs770182601 22 dbSNP
rs1369162486 23 dbSNP
rs776496412 25 dbSNP
rs777371087 25 dbSNP
rs1260513797 26 dbSNP
rs200301737 26 dbSNP
rs34779191 26 dbSNP
rs747072421 26 dbSNP
rs772148535 26 dbSNP
rs780297197 26 dbSNP
rs869102282 26 dbSNP
rs775910175 27 dbSNP
rs763417932 28 dbSNP
rs1361413163 34 dbSNP
rs751089561 38 dbSNP
rs761252454 41 dbSNP
rs1365993805 42 dbSNP
rs1230939956 43 dbSNP
rs767078874 49 dbSNP
rs915906926 52 dbSNP
rs1167287531 66 dbSNP
rs1348662621 68 dbSNP
rs1305625821 70 dbSNP
rs1033929621 71 dbSNP
rs2200686 72 dbSNP
rs968237 75 dbSNP
rs1370044548 76 dbSNP
rs1298856841 92 dbSNP
rs1384168225 95 dbSNP
rs968236 101 dbSNP
rs1362851958 104 dbSNP
rs1288495873 106 dbSNP
rs766674645 115 dbSNP
rs73857317 142 dbSNP
rs564709276 143 dbSNP
rs1341885355 145 dbSNP
rs1174868357 152 dbSNP
rs1434588922 153 dbSNP
rs1024355252 156 dbSNP
rs1397553259 157 dbSNP
rs971473511 157 dbSNP
rs977364117 160 dbSNP
rs1269259957 162 dbSNP
rs146475848 162 dbSNP
rs1195693682 164 dbSNP
rs1429947365 171 dbSNP
rs924638635 172 dbSNP
rs376070432 175 dbSNP
rs776256245 177 dbSNP
rs1487047432 182 dbSNP
rs1211539677 183 dbSNP
rs1281816803 183 dbSNP
rs1229829420 188 dbSNP
rs1254043220 191 dbSNP
rs1229412151 203 dbSNP
rs1326799142 204 dbSNP
rs1004368416 206 dbSNP
rs968235 216 dbSNP
rs990450290 217 dbSNP
rs1313512706 234 dbSNP
rs1358454209 237 dbSNP
rs1414708913 239 dbSNP
rs144857604 250 dbSNP
rs943510156 261 dbSNP
rs374500745 274 dbSNP
rs976673211 281 dbSNP
rs1169582987 292 dbSNP
rs558091524 296 dbSNP
rs1476609808 297 dbSNP
rs1489337873 298 dbSNP
rs995697526 299 dbSNP
rs1259044083 302 dbSNP
rs1027954101 304 dbSNP
rs1441323553 310 dbSNP
rs530047171 311 dbSNP
rs1008071965 320 dbSNP
rs929066888 327 dbSNP
rs1250500859 328 dbSNP
rs1217066091 329 dbSNP
rs1337135144 339 dbSNP
rs1293995130 341 dbSNP
rs1232816145 346 dbSNP
rs201801637 355 dbSNP
rs866102977 355 dbSNP
rs11284516 356 dbSNP
rs115262002 356 dbSNP
rs1338776534 356 dbSNP
rs397703340 356 dbSNP
rs398082366 356 dbSNP
rs376219336 357 dbSNP
rs977894183 361 dbSNP
rs1473215610 365 dbSNP
rs1165190138 366 dbSNP
rs887483127 366 dbSNP
rs925143779 367 dbSNP
rs1424397754 368 dbSNP
rs1159826767 369 dbSNP
rs1362961212 371 dbSNP
rs35789501 378 dbSNP
rs566890520 384 dbSNP
rs1438281793 387 dbSNP
rs1196461021 390 dbSNP
rs1237341067 390 dbSNP
rs536927256 391 dbSNP
rs1417341385 392 dbSNP
rs941936377 394 dbSNP
rs1316943170 395 dbSNP
rs1274120886 397 dbSNP
rs1209436441 405 dbSNP
rs1354398203 408 dbSNP
rs990641253 409 dbSNP
rs1340701092 416 dbSNP
rs1449859416 417 dbSNP
rs1307552460 418 dbSNP
rs1443654617 419 dbSNP
rs1395631680 429 dbSNP
rs534259769 433 dbSNP
rs1381834247 440 dbSNP
rs138672242 443 dbSNP
rs1288119501 447 dbSNP
rs1351354033 456 dbSNP
rs948710872 456 dbSNP
rs571020317 464 dbSNP
rs1176699490 466 dbSNP
rs1455454332 471 dbSNP
rs1013397458 472 dbSNP
rs1203481860 473 dbSNP
rs1283570534 488 dbSNP
rs1443072764 489 dbSNP
rs1212570750 502 dbSNP
rs1286437249 506 dbSNP
rs1024777664 514 dbSNP
rs907284568 519 dbSNP
rs1179598429 523 dbSNP
rs998934992 527 dbSNP
rs1031624486 528 dbSNP
rs940293892 529 dbSNP
rs957359748 536 dbSNP
rs1468990355 542 dbSNP
rs990557918 552 dbSNP
rs1435308626 562 dbSNP
rs1328936747 564 dbSNP
rs898666760 566 dbSNP
rs376995203 568 dbSNP
rs1359320236 571 dbSNP
rs1331840439 575 dbSNP
rs1404857449 579 dbSNP
rs1447280404 583 dbSNP
rs1190347160 584 dbSNP
rs931055624 598 dbSNP
rs1244114637 602 dbSNP
rs72952185 603 dbSNP
rs889561230 609 dbSNP
rs976261809 617 dbSNP
rs923454933 620 dbSNP
rs1349141767 624 dbSNP
rs929040484 626 dbSNP
rs201956530 627 dbSNP
rs1275358207 630 dbSNP
rs1341902982 633 dbSNP
rs1271613387 636 dbSNP
rs1032138540 637 dbSNP
rs1345853386 642 dbSNP
rs1295772891 645 dbSNP
rs908971211 648 dbSNP
rs941666696 651 dbSNP
rs1202206535 652 dbSNP
rs1261521629 655 dbSNP
rs1175257002 656 dbSNP
rs1460991566 661 dbSNP
rs1199663424 666 dbSNP
rs1055217739 667 dbSNP
rs373238943 671 dbSNP
rs958127488 672 dbSNP
rs990220199 673 dbSNP
rs1477594929 677 dbSNP
rs895034158 679 dbSNP
rs1378689318 686 dbSNP
rs1478745246 687 dbSNP
rs970151982 690 dbSNP
rs1428183125 693 dbSNP
rs1237475653 711 dbSNP
rs1208604383 718 dbSNP
rs949357015 719 dbSNP
rs1046212705 721 dbSNP
rs1439972538 723 dbSNP
rs902388494 732 dbSNP
rs999322042 740 dbSNP
rs1332948878 741 dbSNP
rs1234659073 745 dbSNP
rs1379260272 756 dbSNP
rs1394143282 758 dbSNP
rs973396454 765 dbSNP
rs113697309 772 dbSNP
rs1421826624 777 dbSNP
rs1167361947 790 dbSNP
rs931461511 797 dbSNP
rs893227044 812 dbSNP
rs1180650911 819 dbSNP
rs1011546290 828 dbSNP
rs1332705715 830 dbSNP
rs188128496 845 dbSNP
rs1233826391 855 dbSNP
rs1198345438 856 dbSNP
rs964969078 858 dbSNP
rs142467587 867 dbSNP
rs1040655912 871 dbSNP
rs902191982 872 dbSNP
rs999424278 876 dbSNP
rs865869930 885 dbSNP
rs1311336046 889 dbSNP
rs1226540234 896 dbSNP
rs1032685679 901 dbSNP
rs2613925 908 dbSNP
rs997809502 911 dbSNP
rs181991429 927 dbSNP
rs893750761 935 dbSNP
rs950828567 942 dbSNP
rs1328235015 958 dbSNP
rs983623388 960 dbSNP
rs1337907863 964 dbSNP
rs1195554854 973 dbSNP
rs1268696924 985 dbSNP
rs750395487 993 dbSNP
rs1453779673 1000 dbSNP
rs1196658556 1007 dbSNP
rs867854516 1017 dbSNP
rs187111132 1019 dbSNP
rs147987731 1020 dbSNP
rs1477855240 1022 dbSNP
rs539904839 1025 dbSNP
rs191971475 1026 dbSNP
rs981531596 1027 dbSNP
rs761733689 1031 dbSNP
rs1461313146 1032 dbSNP
rs990487960 1033 dbSNP
rs73857318 1040 dbSNP
rs1403096384 1043 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HEK293S
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in GSM1084076. RNA binding protein: AGO2. Condition:CLIP_nohippuristanol_rep1_SigmaAb ...

- Karginov FV; Hannon GJ, 2013, Genes & development.

Article - Karginov FV; Hannon GJ
- Genes & development, 2013
When adapting to environmental stress, cells attenuate and reprogram their translational output. In part, these altered translation profiles are established through changes in the interactions between RNA-binding proteins and mRNAs. The Argonaute 2 (Ago2)/microRNA (miRNA) machinery has been shown to participate in stress-induced translational up-regulation of a particular mRNA, CAT-1; however, a detailed, transcriptome-wide understanding of the involvement of Ago2 in the process has been lacking. Here, we profiled the overall changes in Ago2-mRNA interactions upon arsenite stress by cross-linking immunoprecipitation (CLIP) followed by high-throughput sequencing (CLIP-seq). Ago2 displayed a significant remodeling of its transcript occupancy, with the majority of 3' untranslated region (UTR) and coding sequence (CDS) sites exhibiting stronger interaction. Interestingly, target sites that were destined for release from Ago2 upon stress were depleted in miRNA complementarity signatures, suggesting an alternative mode of interaction. To compare the changes in Ago2-binding patterns across transcripts with changes in their translational states, we measured mRNA profiles on ribosome/polysome gradients by RNA sequencing (RNA-seq). Increased Ago2 occupancy correlated with stronger repression of translation for those mRNAs, as evidenced by a shift toward lighter gradient fractions upon stress, while release of Ago2 was associated with the limited number of transcripts that remained translated. Taken together, these data point to a role for Ago2 and the mammalian miRNAs in mediating the translational component of the stress response.
LinkOut: [PMID: 23824327]
CLIP-seq Support 1 for dataset GSM1084076
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_nohippuristanol_rep1_SigmaAb
Location of target site ENST00000383677.3 | 3UTR | UUACAGUGUGUGUGUGUGUGUGUGU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
Click to see details
Click to see details
174 hsa-miR-3133 Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT057804 SLC30A7 solute carrier family 30 member 7 2 2
MIRT075401 ZFHX3 zinc finger homeobox 3 2 2
MIRT088350 MAPRE3 microtubule associated protein RP/EB family member 3 2 6
MIRT107288 FAM73B mitoguardin 2 2 2
MIRT141571 ABHD2 abhydrolase domain containing 2 2 2
MIRT161036 CDV3 CDV3 homolog 2 2
MIRT167732 RNF146 ring finger protein 146 8 3
MIRT209559 PAK2 p21 (RAC1) activated kinase 2 2 2
MIRT214631 SMAD5 SMAD family member 5 2 8
MIRT258393 KIAA0895 KIAA0895 2 2
MIRT272744 ALG10B ALG10B, alpha-1,2-glucosyltransferase 2 2
MIRT309347 SMARCA5 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 2 6
MIRT329705 SCD stearoyl-CoA desaturase 2 2
MIRT336556 SDE2 SDE2 telomere maintenance homolog 2 2
MIRT363351 AGO2 argonaute 2, RISC catalytic component 2 4
MIRT386753 TAOK1 TAO kinase 1 2 2
MIRT441580 EXOC5 exocyst complex component 5 2 2
MIRT441735 SEPT8 septin 8 2 2
MIRT441817 LRRC40 leucine rich repeat containing 40 2 2
MIRT442180 TRIM59 tripartite motif containing 59 2 4
MIRT442277 TLX3 T-cell leukemia homeobox 3 2 2
MIRT442489 TBC1D19 TBC1 domain family member 19 2 2
MIRT443242 ANKRD26 ankyrin repeat domain 26 2 2
MIRT443270 ZWINT ZW10 interacting kinetochore protein 2 2
MIRT444114 CEPT1 choline/ethanolamine phosphotransferase 1 2 2
MIRT444725 LAMA2 laminin subunit alpha 2 2 2
MIRT445346 FAM169A family with sequence similarity 169 member A 2 2
MIRT445693 GJB1 gap junction protein beta 1 2 2
MIRT446051 CDC73 cell division cycle 73 2 2
MIRT447746 TMCC3 transmembrane and coiled-coil domain family 3 2 2
MIRT447955 AKR7A2 aldo-keto reductase family 7 member A2 2 2
MIRT449199 ZNF623 zinc finger protein 623 2 2
MIRT449564 GPC5 glypican 5 2 2
MIRT450938 BDP1 B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB 2 2
MIRT459811 POTED POTE ankyrin domain family member D 2 8
MIRT461692 ZNF426 zinc finger protein 426 2 2
MIRT462014 SNRNP27 small nuclear ribonucleoprotein U4/U6.U5 subunit 27 2 2
MIRT465150 TSC22D2 TSC22 domain family member 2 2 2
MIRT467144 SREK1IP1 SREK1 interacting protein 1 2 2
MIRT474929 KCTD15 potassium channel tetramerization domain containing 15 2 8
MIRT475118 IPPK inositol-pentakisphosphate 2-kinase 2 2
MIRT476844 FIGN fidgetin, microtubule severing factor 2 10
MIRT477336 EPHA2 EPH receptor A2 2 2
MIRT477853 DYRK3 dual specificity tyrosine phosphorylation regulated kinase 3 2 2
MIRT481113 B2M beta-2-microglobulin 2 2
MIRT481296 ATP6V1B2 ATPase H+ transporting V1 subunit B2 2 10
MIRT485094 SLC30A1 solute carrier family 30 member 1 2 4
MIRT491908 YWHAE tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein epsilon 2 2
MIRT492458 RBPJ recombination signal binding protein for immunoglobulin kappa J region 2 8
MIRT493341 LAPTM4A lysosomal protein transmembrane 4 alpha 2 12
MIRT494771 AP1G1 adaptor related protein complex 1 gamma 1 subunit 2 2
MIRT497837 GPR26 G protein-coupled receptor 26 2 2
MIRT497958 DGAT2 diacylglycerol O-acyltransferase 2 2 2
MIRT498445 INO80D INO80 complex subunit D 2 2
MIRT498997 HAT1 histone acetyltransferase 1 2 10
MIRT499257 VAV3 vav guanine nucleotide exchange factor 3 2 4
MIRT500067 SFT2D2 SFT2 domain containing 2 2 4
MIRT501385 RBFOX2 RNA binding protein, fox-1 homolog 2 2 10
MIRT503084 BTG2 BTG anti-proliferation factor 2 2 4
MIRT503272 SLC7A5 solute carrier family 7 member 5 2 2
MIRT504341 ASGR2 asialoglycoprotein receptor 2 2 2
MIRT505453 SUGT1 SGT1 homolog, MIS12 kinetochore complex assembly cochaperone 2 6
MIRT505905 RIMS3 regulating synaptic membrane exocytosis 3 2 6
MIRT507917 C7orf60 base methyltransferase of 25S rRNA 2 homolog 2 6
MIRT508174 FRK fyn related Src family tyrosine kinase 2 4
MIRT508287 YES1 YES proto-oncogene 1, Src family tyrosine kinase 2 4
MIRT509232 KIF14 kinesin family member 14 2 6
MIRT509481 GNL3L G protein nucleolar 3 like 2 6
MIRT509530 INTU inturned planar cell polarity protein 2 6
MIRT509548 BTLA B and T lymphocyte associated 2 8
MIRT511328 KIAA1522 KIAA1522 2 4
MIRT511427 HSP90AA1 heat shock protein 90 alpha family class A member 1 2 4
MIRT511477 HNRNPC heterogeneous nuclear ribonucleoprotein C (C1/C2) 2 4
MIRT512471 CCDC149 coiled-coil domain containing 149 2 2
MIRT512996 SEZ6L seizure related 6 homolog like 2 2
MIRT514755 ACER3 alkaline ceramidase 3 2 8
MIRT515764 KRTAP5-6 keratin associated protein 5-6 2 2
MIRT517392 TBK1 TANK binding kinase 1 2 4
MIRT518720 FTH1 ferritin heavy chain 1 2 2
MIRT521923 PHIP pleckstrin homology domain interacting protein 2 4
MIRT522849 KIAA2022 neurite extension and migration factor 2 4
MIRT522887 KDELR1 KDEL endoplasmic reticulum protein retention receptor 1 2 2
MIRT523153 HNRNPU heterogeneous nuclear ribonucleoprotein U 2 2
MIRT525149 ZNF256 zinc finger protein 256 2 2
MIRT525941 C11orf74 chromosome 11 open reading frame 74 2 2
MIRT526876 ERCC8 ERCC excision repair 8, CSA ubiquitin ligase complex subunit 2 2
MIRT527366 KRTAP13-2 keratin associated protein 13-2 2 2
MIRT527549 DLGAP5 DLG associated protein 5 2 4
MIRT527604 ANKRD42 ankyrin repeat domain 42 2 2
MIRT527803 KLRD1 killer cell lectin like receptor D1 2 2
MIRT528046 PRKD3 protein kinase D3 2 2
MIRT528397 PGK1 phosphoglycerate kinase 1 2 2
MIRT529673 SLC28A1 solute carrier family 28 member 1 2 2
MIRT530358 HPSE heparanase 2 2
MIRT530908 KIAA1161 myogenesis regulating glycosidase (putative) 2 2
MIRT531169 ZNF333 zinc finger protein 333 2 2
MIRT531438 PAK1 p21 (RAC1) activated kinase 1 2 2
MIRT531562 CENPC1P1 centromere protein C pseudogene 1 1 1
MIRT532783 LDHD lactate dehydrogenase D 2 2
MIRT532848 ZNF699 zinc finger protein 699 2 2
MIRT534287 SLC12A7 solute carrier family 12 member 7 2 2
MIRT535078 PPIG peptidylprolyl isomerase G 2 4
MIRT535968 MFAP3L microfibril associated protein 3 like 2 2
MIRT536163 MAP3K9 mitogen-activated protein kinase kinase kinase 9 2 4
MIRT537417 FBXO47 F-box protein 47 2 2
MIRT538665 CCSAP centriole, cilia and spindle associated protein 2 2
MIRT540291 RGR retinal G protein coupled receptor 2 4
MIRT543332 KIAA1456 KIAA1456 2 2
MIRT543392 CC2D2A coiled-coil and C2 domain containing 2A 2 2
MIRT543891 AIMP1 aminoacyl tRNA synthetase complex interacting multifunctional protein 1 2 2
MIRT545609 SIGLEC9 sialic acid binding Ig like lectin 9 2 2
MIRT545839 ZNF275 zinc finger protein 275 2 2
MIRT546689 RORA RAR related orphan receptor A 2 4
MIRT547513 MAT2A methionine adenosyltransferase 2A 2 4
MIRT549431 ACVR1 activin A receptor type 1 2 2
MIRT550567 MYC MYC proto-oncogene, bHLH transcription factor 2 4
MIRT552517 ZIC5 Zic family member 5 2 2
MIRT552743 YRDC yrdC N6-threonylcarbamoyltransferase domain containing 2 2
MIRT552942 VKORC1L1 vitamin K epoxide reductase complex subunit 1 like 1 2 2
MIRT555752 PDCD10 programmed cell death 10 2 2
MIRT558002 FAM160B1 family with sequence similarity 160 member B1 2 2
MIRT559422 ASF1B anti-silencing function 1B histone chaperone 2 2
MIRT560276 SF1 splicing factor 1 2 2
MIRT560713 ZNF324B zinc finger protein 324B 2 2
MIRT561190 TNFRSF10A TNF receptor superfamily member 10a 2 2
MIRT561817 NUP50 nucleoporin 50 2 2
MIRT562018 LCLAT1 lysocardiolipin acyltransferase 1 2 2
MIRT562847 LINC00346 long intergenic non-protein coding RNA 346 2 2
MIRT563252 SETD6 SET domain containing 6 2 2
MIRT563978 GCC2 GRIP and coiled-coil domain containing 2 2 2
MIRT564383 BAAT bile acid-CoA:amino acid N-acyltransferase 2 2
MIRT566552 PANK3 pantothenate kinase 3 2 2
MIRT566933 LIN28B lin-28 homolog B 2 2
MIRT566989 LBR lamin B receptor 2 2
MIRT567645 EXT1 exostosin glycosyltransferase 1 2 2
MIRT568268 BICD2 BICD cargo adaptor 2 2 2
MIRT571407 MED4 mediator complex subunit 4 2 2
MIRT571784 PPP2CA protein phosphatase 2 catalytic subunit alpha 2 2
MIRT572437 ATM ATM serine/threonine kinase 2 2
MIRT573613 COX6A1P2 cytochrome c oxidase subunit 6A1 pseudogene 2 2 2
MIRT574289 COX6A1 cytochrome c oxidase subunit 6A1 2 2
MIRT574375 YY1 YY1 transcription factor 2 2
MIRT613142 DSEL dermatan sulfate epimerase-like 2 2
MIRT616661 ORAI1 ORAI calcium release-activated calcium modulator 1 2 2
MIRT619345 SASH1 SAM and SH3 domain containing 1 2 2
MIRT626315 ABCC9 ATP binding cassette subfamily C member 9 2 2
MIRT628235 FAM117B family with sequence similarity 117 member B 2 2
MIRT630452 GTPBP8 GTP binding protein 8 (putative) 2 2
MIRT631013 TMEM30B transmembrane protein 30B 2 2
MIRT637315 FBXO18 F-box protein, helicase, 18 2 2
MIRT640658 FRY FRY microtubule binding protein 2 2
MIRT642081 FUT11 fucosyltransferase 11 2 2
MIRT644607 C17orf77 chromosome 17 open reading frame 77 2 2
MIRT644829 DNAJC21 DnaJ heat shock protein family (Hsp40) member C21 2 2
MIRT652465 TMEM2 transmembrane protein 2 2 2
MIRT657514 HAS2 hyaluronan synthase 2 2 2
MIRT658290 FAM86C1 family with sequence similarity 86 member C1 2 2
MIRT659570 CGGBP1 CGG triplet repeat binding protein 1 2 2
MIRT675457 SRP19 signal recognition particle 19 2 2
MIRT687828 ITGB8 integrin subunit beta 8 2 2
MIRT693550 MYO16 myosin XVI 2 2
MIRT697294 ZNF654 zinc finger protein 654 2 2
MIRT699804 SEC24A SEC24 homolog A, COPII coat complex component 2 2
MIRT704867 CD164 CD164 molecule 2 2
MIRT705309 AVL9 AVL9 cell migration associated 2 2
MIRT705323 ATP2A2 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 2 2 2
MIRT707180 HOXC4 homeobox C4 2 2
MIRT709331 CLEC12B C-type lectin domain family 12 member B 2 2
MIRT712321 PER2 period circadian clock 2 2 2
MIRT713817 XRCC2 X-ray repair cross complementing 2 2 2
MIRT713854 HHLA2 HERV-H LTR-associating 2 2 2
MIRT717257 SLC44A1 solute carrier family 44 member 1 2 2
MIRT719956 BLOC1S6 biogenesis of lysosomal organelles complex 1 subunit 6 2 2
MIRT725408 KIF6 kinesin family member 6 2 2
miRNA-Drug Associations
miRNA Small Melocule FDA CID Detection Method Condition PMID Year Expression Pattern of miRNA
miR-3133 5-Fluorouracil approved 3385 Microarray CNE cells 22614822 2012 up-regulated
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-3133 Imatinib 5291 NSC743414 approved sensitive High Gastrointestinal Stromal Tumor cell line (882R-NC, 882R-OE, 882R-KD)
hsa-mir-3133 Androstenedione+Anastrozole sensitive cell line (MCF-7)
hsa-mir-3133 Cisplatin 5460033 NSC119875 approved sensitive cell line (BxPC3)
hsa-miR-3133 Gefitinib 123631 NSC715055 approved sensitive cell line (PC9)
hsa-miR-3133 Gefitinib 123631 NSC715055 approved resistant cell line (HCC827)
hsa-miR-3133 Osimertinib 71496458 NSC779217 approved resistant cell line (HCC827)
hsa-miR-3133 Gefitinib 123631 NSC715055 approved resistant cell line (HCC827)
hsa-miR-3133 Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-3133 Gemcitabine 60750 NSC613327 approved resistant cell line (PANC-1) (1500 ng/ml)

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