pre-miRNA Information
pre-miRNA hsa-mir-4433a   
Genomic Coordinates chr2: 64340759 - 64340839
Description Homo sapiens miR-4433a stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-4433a-3p
Sequence 51| ACAGGAGUGGGGGUGGGACAU |71
Evidence Experimental
Experiments Illumina
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs751480515 9 dbSNP
rs557760377 15 dbSNP
rs1479580865 20 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol ENTPD5   
Synonyms CD39L4, NTPDase-5, PCPH
Description ectonucleoside triphosphate diphosphohydrolase 5
Transcript NM_001249   
Expression
Putative miRNA Targets on ENTPD5
3'UTR of ENTPD5
(miRNA target sites are highlighted)
>ENTPD5|NM_001249|3'UTR
   1 GGCCACGTACTTCCTTGGAGACCTGCATTTGCCAACACCTTTTTAAGGGGAGGAGAGAGCACTTAGTTTCTGAACTAGTC
  81 TGGGGACATCCTGGACTTGAGCCTAGAGATTTAGGTTTAATTAATTTTACACATCTAATGTGAACTGCTGCCTAACCACT
 161 CAAGAGTACACAGCTGGCACCAGAGCATCACAGAGAGCCCTGTGAGCCAAAAAGTATAGTTTTGGAACTTAACCTTGGAG
 241 TGAGAGCCCAGGGACAGGTCCCTGGAAACCAAAGAAAAATCGCATTTCAACCCTTTGAGTGCCTCATTCCACTGAATATT
 321 TAAATTTTCCTCTTAAATGGTAAACTGACTTATTGCAATCCCAAGACCCATCAATATCAGTATTTTTTTCCTCCCTATAC
 401 AGTGCCCTGCCCACCCTTATCTGCACCCACCTCCCCTGAAAAAGAGAGAAAAAAAAAAACCTGGTTTTGCTTTCCATGTA
 481 TAATTCAACAACGCAAAATGGGACCATGTCAGAATCTGTATGATCCTATTCTGTGTTAGCTCCAATCAGCCAGCTGAGAG
 561 CCATCCTAAATATTAATAGGATGAGAGAGTAACTCCTAACTGTGCATAAATTACAGCCTTAAGAAAGAAGGCCACCCGGT
 641 CTCTGGGGACATGTTTTGGGAGGGTGTGGCTGCCTCATATAGCCTACCTTTGCTTTAATCAGCATTTTATCAGTCAACTC
 721 TGGGATTAATGAACATATCCGACTTTATGGGTATGTGTATATTCAGTGCCAGTACCACCTCCCAGGCTAATGTGTTAACA
 801 GTGTTTTCTATGATTCTAAACTTGTTTTCTTTGTATTTCTAAGAAATACAACTAGGCCCTAACTTTTGGTCTGTGGTCAG
 881 AGGTCAGTGTCTGTGCTATTCCAGGATCTATTATTTCAGTTTGCCCTTTTATTCTCTCCGTTTGTAACAGTACCTTCCTG
 961 TCCTGGTCCCTGATCACTTTAGCTAATATCCTTTGAATTATTTATCTAGTTCAGAGTTTCCAATACCGTTCCTGACAAAA
1041 CCCCACTTGGATTTGGTTGGCTCTCTCAGCCCACATCAGTACAGTGGACCAACATTTCCAGGGAGAACCATATTTAATGT
1121 CCCTCATGCTCTCTTTTTGAATCCAAGTGCTCAGAGCTCTTGACTGTGAATTATTTACCCCAAATTCATTATCTTGCACT
1201 TTTTTTTGAGATGGAGTCTTGCTCTGTTGCTCAGGCTAGAGTGGAGTGGCGCAATCTCAGCTCACTGCAACCTCCGCCCC
1281 CAGGTTCAAGCGATTCTTGTTCTCAGCCTCCTGAAGAGCTGGGATTACAGGTGCCCACCACCATTCCTGGCTAATTTTTG
1361 TATTTGTAGTAGAGATGGGGTTTCACCATGTTGGCCAGGCTGGTTTCCAACTCCTGATCTCAATTGATCCACCCGCTTCC
1441 CAAAGTGCTGGGATTACAGGCATGAGACACCGCGCCTGGCCTTATCTTGCACTTTCAACATAATCATCCCTGCTTCTCAT
1521 CTGCCCTGCAGTGCTCTTGGACCTGGAAGATCTCCCTGTGGTCTGGCCCCTTTGCCTTGGTTGTTAACCTCCAGCTTCTT
1601 TGCAGGAGTGTATTTCCCCAAAACTTGTGGCTTTCACAGTAGACTCCGTTTCCATCCTCTCTCTCACAAAGGATGTTAAG
1681 TATGCCTGGCCCTCACACAGTCCATGGGAAACCTTATTTTTAACATTACTCCATTGAGTCAATAAATATTTACCATCTGC
1761 TGTGTGCAAGTTACTAGGCAAATTTCTGTATCCTTGTCCCTAAAATTCTTGTCTTTAAATTCATTGTGGAATTTCTTTAG
1841 ACTTCACACTGACTTTTATTACTAAGGTCACCTTTATACCAACTGCCTTCCTCAAAATGCTTATAATGAAATAACAGAAT
1921 CTTGAGTTGGAAACAGCCCAAAGAAATAATCCAATGTTGTACTCAGTGCAGAATTCCCTAGAATTTCTAACAGGTTGTCA
2001 TTCAGCTTCTGCTAAGCCATGTTCAAACAGCTTATTCCATTTGGAACTGCACTGATATTAAAAAAAATTCCTTATATTGA
2081 GCTGAAATCTACCTATCTTCTAAGTGGTCTTAGTTCTGCTCTAATCTCTCCTTCCAAAATCTTTGGATCTTTTGAAAAAA
2161 GTTCCTCCCAAGTTCTTTTATAAGTGACATGACTTTTAGACCCCTTCCCATCTTTGTCAACAAAAGTAGGGTGCCAGACC
2241 AGTCACAGAACACTAAATGTCATCCATGTTTCCTTCAGTAGAAACCAGCAGTTTTAAAAGAGGTAAGCTGTGTTCACTAA
2321 AGACTGTTCCAGCTTGACAAATGCAGAGATATAAGTCTCTGGTCTTTAATCACTGTGGGGGCCATTTTGTAAAACACACA
2401 TACTGTCCAGCAGACTCCTTTGGTCATCCCAAATACCTCTGAACTCCAGGGAAGATGCATTCTAACTCCACGAACTTACC
2481 TATTTTGTTAACCTTGATTAGACCTTCTGGAGAAGTAACCAATTTGTCCATCTTAGGAGCAATTTGGAATGAGAGTTTTT
2561 ATTTTTTTCTGTAACGCCCATCCTGCCTGCAGTAGACCCTTTGGGCTTAAGAGGTCCTACAGATTCTAATAGTTTCCTCT
2641 TTGTAGATGTGTTAACATATTTAAAATACTTAGGACATGGCCTGGTACGTGACAGATGGTGTTTAACATCATTGTCATAT
2721 GAAGAACACTCTCTGTGGGCCAATGGAGGTGTGCCTTAAAATTCTTCATCTTGCCTGATTTTGTTTGCATAACTTCTGGA
2801 GAGTCTGTGTCCTCCTCATCTAGGCCACCTTTCCATTTTTTGTGAAAGATGACCTTGTCCCTGCAGTCTCCGCCAGGAGT
2881 CACACAGCTTTTCACAGCAGCTGCCATCTTTAATTCTTTTTCCTGAGATTCCAGCAAGGTTGTGACATTGTCACTTTTTT
2961 GTTCTAGACTCTTTTAAATTTTCTGCATTTGCCTGAAAAGCACCCCTGTAAGAATAGATTTCTCATGGCTCTAAAAATTA
3041 TTCCCAAGAATACCTTACTTGGTTCAAAAGCAGACTGTTTCTCTTCATTTCATCTCAAATCAGACTTCTGGGCAAGATGT
3121 TCTTTAGAGTAAGCAAACCTACAACCTAAAAATCTCTTCAAGAGGCATCTCTGGTCTTGTGACGAGACCTCTTCAAAAAC
3201 CCACAGTAAAACTCCCCTCCCTCCAGTTGGCCACCAGTCTGCCACCAAACATGAACAAATTCTGCTGCTAATCGGTTTCC
3281 CTTGTGATCTGGTTCCTGAGGTCTTCGGATCTGTGCAATGAATTATTTATTGTTTTATTAAACCGACAGTGGTGTCCCAG
3361 AGAGGAACCATAAATAAAATGGAAATCTGGTGCTGTGATAAAGTAATAACTAGCATTAATGAGACCTGGTTTTCCTTTCA
3441 GAAAGTCCAGTATACCTGTAACAAAGGTTAAAGCAATTTATATTTAATTTGCATTCTGATGTTAACATTTAAACAGCAAT
3521 TCTAACAAAAATGCATCGAGTCTAATTCTTACCTCTATCAAAAAACAACTGTATAAATTTATGACCAACATTAAAACAAA
3601 AACAAAATGTAAATTTTCTCTTTAGAAATGATTAACTGGAAATGAGTGAGACAGCACCTTGTGGGTTTTTTAGTAATAAA
3681 AAGCTCTTTTCAACCAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' uaCA-GGGUGGGGGUGAGGACa 5'
            || |||||| |||:||||| 
Target 5' agGTGCCCACCACCATTCCTGg 3'
1329 - 1350 163.00 -28.80
2
miRNA  3' uaCAGGGUGGGGG-UGAGGACa 5'
            | |: ::::|| ||||||| 
Target 5' caGGCTGGTTTCCAACTCCTGa 3'
1396 - 1417 151.00 -18.80
3
miRNA  3' uacAGGGUGGGGGUGAGGACa 5'
             |:||| : ||::||||| 
Target 5' agtTTCCAATACCGTTCCTGa 3'
1015 - 1035 134.00 -19.90
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN31514576 6 COSMIC
COSN31572393 7 COSMIC
COSN31553167 108 COSMIC
COSN8588936 124 COSMIC
COSN1171006 181 COSMIC
COSN31603286 257 COSMIC
COSN31514715 282 COSMIC
COSN26586680 288 COSMIC
COSN31571884 327 COSMIC
COSN9617854 890 COSMIC
COSN9617853 1898 COSMIC
COSN1171004 2167 COSMIC
COSN6258368 2502 COSMIC
COSN6258367 2748 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs759707876 5 dbSNP
rs749380446 6 dbSNP
rs777993195 7 dbSNP
rs769827332 9 dbSNP
rs901431118 18 dbSNP
rs78933588 20 dbSNP
rs1182362401 21 dbSNP
rs201992473 23 dbSNP
rs1193436395 24 dbSNP
rs146333729 25 dbSNP
rs1169056308 28 dbSNP
rs747734874 29 dbSNP
rs778651446 33 dbSNP
rs754445643 35 dbSNP
rs753351719 38 dbSNP
rs1211781485 41 dbSNP
rs777056616 45 dbSNP
rs183072167 47 dbSNP
rs757747454 50 dbSNP
rs1363946502 57 dbSNP
rs1302718028 59 dbSNP
rs114220367 67 dbSNP
rs13743 79 dbSNP
rs1215273083 85 dbSNP
rs979764869 96 dbSNP
rs570699998 98 dbSNP
rs1235749803 99 dbSNP
rs1263987531 105 dbSNP
rs1323348892 106 dbSNP
rs1202107059 108 dbSNP
rs1031182900 121 dbSNP
rs1486459372 127 dbSNP
rs917160814 130 dbSNP
rs1802182 134 dbSNP
rs992784811 145 dbSNP
rs961480596 149 dbSNP
rs751299763 160 dbSNP
rs904116873 164 dbSNP
rs1434387940 175 dbSNP
rs1176779481 181 dbSNP
rs1188053402 189 dbSNP
rs1039930634 191 dbSNP
rs942737990 193 dbSNP
rs1373838508 206 dbSNP
rs1345737177 209 dbSNP
rs750480685 214 dbSNP
rs547597515 216 dbSNP
rs190461002 225 dbSNP
rs952830584 233 dbSNP
rs527420488 240 dbSNP
rs561791727 243 dbSNP
rs930094150 247 dbSNP
rs918637167 252 dbSNP
rs1270365294 254 dbSNP
rs1317876462 255 dbSNP
rs757544628 258 dbSNP
rs1296833618 259 dbSNP
rs547890306 265 dbSNP
rs758044236 269 dbSNP
rs1259471348 274 dbSNP
rs749995839 277 dbSNP
rs1199423112 279 dbSNP
rs901210298 280 dbSNP
rs764635437 281 dbSNP
rs142035384 282 dbSNP
rs1009838700 283 dbSNP
rs892598709 291 dbSNP
rs927231991 293 dbSNP
rs1053964789 297 dbSNP
rs1399891672 297 dbSNP
rs761288013 301 dbSNP
rs1351489928 313 dbSNP
rs1405760913 313 dbSNP
rs904268715 314 dbSNP
rs1345145028 322 dbSNP
rs1403392286 324 dbSNP
rs562930666 330 dbSNP
rs1044199442 343 dbSNP
rs1374575336 348 dbSNP
rs916941376 350 dbSNP
rs1305495699 354 dbSNP
rs1352534157 355 dbSNP
rs1296521889 356 dbSNP
rs1323987252 374 dbSNP
rs988855384 379 dbSNP
rs955824242 382 dbSNP
rs1489620233 390 dbSNP
rs368774051 398 dbSNP
rs1233085789 401 dbSNP
rs544722277 405 dbSNP
rs867456134 415 dbSNP
rs1175199685 416 dbSNP
rs1415917084 424 dbSNP
rs1445118549 430 dbSNP
rs1468069489 431 dbSNP
rs1162832022 434 dbSNP
rs1365084078 435 dbSNP
rs1428299323 438 dbSNP
rs1199758246 444 dbSNP
rs993127249 445 dbSNP
rs1481205200 446 dbSNP
rs1247886885 447 dbSNP
rs373184706 448 dbSNP
rs1480640074 449 dbSNP
rs1491516447 449 dbSNP
rs939961769 449 dbSNP
rs1414908641 450 dbSNP
rs1491361907 450 dbSNP
rs908334106 450 dbSNP
rs1215758000 453 dbSNP
rs983968458 458 dbSNP
rs141281114 460 dbSNP
rs35835514 460 dbSNP
rs560359490 460 dbSNP
rs796856187 460 dbSNP
rs952581555 460 dbSNP
rs868657884 461 dbSNP
rs1007077429 463 dbSNP
rs1028351114 470 dbSNP
rs1442858399 471 dbSNP
rs1321920029 473 dbSNP
rs1420519354 475 dbSNP
rs72723776 490 dbSNP
rs759829876 491 dbSNP
rs11624946 493 dbSNP
rs1333052785 500 dbSNP
rs7161037 502 dbSNP
rs186508575 506 dbSNP
rs1381140222 511 dbSNP
rs1432326516 517 dbSNP
rs148674995 519 dbSNP
rs1338160673 537 dbSNP
rs1033044863 540 dbSNP
rs576428009 554 dbSNP
rs1374102665 556 dbSNP
rs1333332125 560 dbSNP
rs1264616687 573 dbSNP
rs144021895 589 dbSNP
rs763251817 593 dbSNP
rs1202719294 594 dbSNP
rs375101755 602 dbSNP
rs1241228272 605 dbSNP
rs1466159378 609 dbSNP
rs941205318 614 dbSNP
rs181821437 616 dbSNP
rs1475123267 617 dbSNP
rs1166431133 626 dbSNP
rs556194868 627 dbSNP
rs570734873 628 dbSNP
rs547632340 629 dbSNP
rs1239447097 631 dbSNP
rs1384474066 631 dbSNP
rs1181122734 635 dbSNP
rs533952463 637 dbSNP
rs988499329 638 dbSNP
rs955896103 645 dbSNP
rs75705334 646 dbSNP
rs1347521033 653 dbSNP
rs748210820 656 dbSNP
rs978468958 663 dbSNP
rs1259219156 665 dbSNP
rs533007294 679 dbSNP
rs191165116 686 dbSNP
rs1048819556 697 dbSNP
rs781467155 697 dbSNP
rs1450439545 704 dbSNP
rs1480859446 707 dbSNP
rs1381947909 709 dbSNP
rs955657073 715 dbSNP
rs1030285815 737 dbSNP
rs897148999 738 dbSNP
rs931129997 739 dbSNP
rs1398479530 740 dbSNP
rs1397585707 744 dbSNP
rs1304377682 752 dbSNP
rs921114485 759 dbSNP
rs905920301 772 dbSNP
rs1280968653 773 dbSNP
rs1337371268 775 dbSNP
rs1239428846 779 dbSNP
rs1278891581 783 dbSNP
rs1348407410 785 dbSNP
rs1214574478 796 dbSNP
rs1287963394 797 dbSNP
rs1044260703 803 dbSNP
rs975439001 807 dbSNP
rs1453986508 809 dbSNP
rs1265525187 810 dbSNP
rs895773670 812 dbSNP
rs1053437724 828 dbSNP
rs1363747877 830 dbSNP
rs1438437716 836 dbSNP
rs1165983879 847 dbSNP
rs776447080 849 dbSNP
rs934373446 849 dbSNP
rs1423439994 861 dbSNP
rs965439564 863 dbSNP
rs925602685 877 dbSNP
rs1300919472 882 dbSNP
rs531305507 888 dbSNP
rs562188680 897 dbSNP
rs551743277 898 dbSNP
rs1327885791 899 dbSNP
rs533473827 910 dbSNP
rs1385186108 912 dbSNP
rs988154244 913 dbSNP
rs985647487 919 dbSNP
rs1360337022 933 dbSNP
rs1245269375 936 dbSNP
rs1263928312 938 dbSNP
rs956953801 939 dbSNP
rs564410905 940 dbSNP
rs1018482288 962 dbSNP
rs1029946165 966 dbSNP
rs1456712032 968 dbSNP
rs1186026346 970 dbSNP
rs1386341248 972 dbSNP
rs1443485648 973 dbSNP
rs1204831423 1001 dbSNP
rs1374466594 1009 dbSNP
rs1032579086 1023 dbSNP
rs973379826 1026 dbSNP
rs561669291 1028 dbSNP
rs185940828 1036 dbSNP
rs1454369613 1043 dbSNP
rs969517814 1044 dbSNP
rs1023818690 1048 dbSNP
rs1337312744 1056 dbSNP
rs181564839 1062 dbSNP
rs1012634072 1066 dbSNP
rs776254833 1072 dbSNP
rs562138804 1075 dbSNP
rs542349172 1082 dbSNP
rs1309312895 1086 dbSNP
rs1228507495 1089 dbSNP
rs746874570 1091 dbSNP
rs1005523906 1104 dbSNP
rs1316452641 1107 dbSNP
rs1205907955 1108 dbSNP
rs576443736 1113 dbSNP
rs905951253 1121 dbSNP
rs895567562 1123 dbSNP
rs1023469255 1126 dbSNP
rs1246858813 1127 dbSNP
rs1324529514 1135 dbSNP
rs1263281720 1138 dbSNP
rs1428578328 1139 dbSNP
rs1014122658 1140 dbSNP
rs1317371558 1141 dbSNP
rs1382510048 1144 dbSNP
rs1192106970 1147 dbSNP
rs779814258 1148 dbSNP
rs1057318619 1151 dbSNP
rs1003869779 1152 dbSNP
rs1176841543 1158 dbSNP
rs895626235 1162 dbSNP
rs756664111 1169 dbSNP
rs189605247 1173 dbSNP
rs1048283874 1177 dbSNP
rs931242231 1178 dbSNP
rs921060884 1181 dbSNP
rs1039513673 1184 dbSNP
rs1164393898 1189 dbSNP
rs943910993 1197 dbSNP
rs4140924 1201 dbSNP
rs745493262 1205 dbSNP
rs1323248233 1206 dbSNP
rs146133979 1208 dbSNP
rs1263011472 1213 dbSNP
rs1265640656 1221 dbSNP
rs1220484309 1231 dbSNP
rs942997834 1236 dbSNP
rs1290651878 1238 dbSNP
rs1481238691 1239 dbSNP
rs778592198 1240 dbSNP
rs577222176 1242 dbSNP
rs1428413823 1244 dbSNP
rs1337375040 1245 dbSNP
rs1431227171 1246 dbSNP
rs956711408 1247 dbSNP
rs62006132 1249 dbSNP
rs1227916065 1251 dbSNP
rs925290575 1254 dbSNP
rs1454393710 1255 dbSNP
rs567197643 1256 dbSNP
rs969631928 1258 dbSNP
rs987616548 1265 dbSNP
rs533748705 1272 dbSNP
rs756737196 1275 dbSNP
rs568295182 1276 dbSNP
rs972899690 1280 dbSNP
rs1035426148 1281 dbSNP
rs1403931317 1289 dbSNP
rs1004388560 1291 dbSNP
rs554459659 1292 dbSNP
rs1283328004 1298 dbSNP
rs1490694397 1304 dbSNP
rs1222858458 1308 dbSNP
rs537982865 1313 dbSNP
rs1394981858 1318 dbSNP
rs984161703 1319 dbSNP
rs995342170 1323 dbSNP
rs1466497915 1328 dbSNP
rs1426189168 1331 dbSNP
rs970039398 1332 dbSNP
rs899756264 1336 dbSNP
rs767911558 1338 dbSNP
rs943858844 1345 dbSNP
rs1014737100 1351 dbSNP
rs147000582 1352 dbSNP
rs1052503937 1355 dbSNP
rs1272247657 1360 dbSNP
rs7155210 1366 dbSNP
rs531947045 1374 dbSNP
rs752027007 1379 dbSNP
rs948071105 1385 dbSNP
rs1042950444 1388 dbSNP
rs916821193 1389 dbSNP
rs1222592282 1400 dbSNP
rs183808144 1414 dbSNP
rs960881359 1415 dbSNP
rs1015520470 1416 dbSNP
rs982518105 1419 dbSNP
rs550637438 1421 dbSNP
rs138659066 1423 dbSNP
rs530812558 1424 dbSNP
rs1206145679 1434 dbSNP
rs550569108 1435 dbSNP
rs918980258 1441 dbSNP
rs1448140307 1442 dbSNP
rs1402978519 1445 dbSNP
rs1446533602 1450 dbSNP
rs1164237880 1451 dbSNP
rs899535283 1457 dbSNP
rs181602404 1459 dbSNP
rs1018125555 1463 dbSNP
rs1008577945 1465 dbSNP
rs1469561587 1468 dbSNP
rs7156320 1469 dbSNP
rs1174494890 1470 dbSNP
rs868816445 1471 dbSNP
rs940169926 1472 dbSNP
rs118113209 1473 dbSNP
rs546227185 1474 dbSNP
rs1216019213 1477 dbSNP
rs1273262030 1484 dbSNP
rs1317072145 1489 dbSNP
rs984359804 1496 dbSNP
rs1264947819 1503 dbSNP
rs903929349 1510 dbSNP
rs78355949 1513 dbSNP
rs1188513507 1531 dbSNP
rs540563235 1534 dbSNP
rs1465455015 1542 dbSNP
rs960406450 1546 dbSNP
rs768536884 1550 dbSNP
rs948018208 1556 dbSNP
rs1470616816 1557 dbSNP
rs1334068798 1559 dbSNP
rs1202809636 1563 dbSNP
rs574631385 1565 dbSNP
rs1448703034 1575 dbSNP
rs1432203504 1576 dbSNP
rs992381437 1577 dbSNP
rs1280328774 1579 dbSNP
rs1339388541 1594 dbSNP
rs939605220 1600 dbSNP
rs1264812364 1604 dbSNP
rs746929678 1607 dbSNP
rs775308199 1610 dbSNP
rs984020608 1618 dbSNP
rs1276340831 1620 dbSNP
rs1440787461 1623 dbSNP
rs1309333303 1624 dbSNP
rs952278385 1638 dbSNP
rs1242948396 1640 dbSNP
rs1477641482 1644 dbSNP
rs112429449 1647 dbSNP
rs1431975459 1648 dbSNP
rs1007411157 1659 dbSNP
rs1400617494 1660 dbSNP
rs145764100 1660 dbSNP
rs60467072 1660 dbSNP
rs1051877458 1666 dbSNP
rs113461968 1668 dbSNP
rs1397817525 1672 dbSNP
rs1284806340 1673 dbSNP
rs1345920754 1674 dbSNP
rs963654094 1680 dbSNP
rs1273030490 1684 dbSNP
rs570927760 1700 dbSNP
rs188796735 1702 dbSNP
rs1399165092 1725 dbSNP
rs537615969 1726 dbSNP
rs1487995468 1734 dbSNP
rs568628353 1736 dbSNP
rs1008109289 1742 dbSNP
rs1214808616 1746 dbSNP
rs745609824 1755 dbSNP
rs910033183 1758 dbSNP
rs1468349299 1767 dbSNP
rs1407438611 1771 dbSNP
rs891036439 1774 dbSNP
rs1030952200 1777 dbSNP
rs1376462157 1779 dbSNP
rs1471462670 1781 dbSNP
rs778438758 1783 dbSNP
rs1379230032 1784 dbSNP
rs756864991 1785 dbSNP
rs1417252199 1788 dbSNP
rs903712996 1790 dbSNP
rs1386039699 1793 dbSNP
rs1383326874 1806 dbSNP
rs748812868 1811 dbSNP
rs948999531 1813 dbSNP
rs1337286318 1816 dbSNP
rs1043810808 1818 dbSNP
rs777322926 1823 dbSNP
rs140770523 1824 dbSNP
rs1353082830 1838 dbSNP
rs1237975465 1844 dbSNP
rs1294243119 1858 dbSNP
rs960064184 1864 dbSNP
rs1209429672 1868 dbSNP
rs1265764728 1871 dbSNP
rs577547157 1872 dbSNP
rs1179823288 1882 dbSNP
rs1238965130 1907 dbSNP
rs12161877 1917 dbSNP
rs1437306064 1919 dbSNP
rs558191163 1924 dbSNP
rs1368510587 1937 dbSNP
rs1457137637 1943 dbSNP
rs1161082841 1953 dbSNP
rs908110051 1954 dbSNP
rs968543901 1977 dbSNP
rs1213283313 1987 dbSNP
rs1391692284 1989 dbSNP
rs1330605256 1995 dbSNP
rs1374505979 2001 dbSNP
rs1446060732 2007 dbSNP
rs1021428597 2015 dbSNP
rs1341113685 2016 dbSNP
rs1048002662 2018 dbSNP
rs930787384 2020 dbSNP
rs151308213 2023 dbSNP
rs973760420 2024 dbSNP
rs1218192261 2028 dbSNP
rs963769445 2050 dbSNP
rs566169719 2058 dbSNP
rs1456857036 2059 dbSNP
rs868611605 2060 dbSNP
rs1256319135 2065 dbSNP
rs1014705510 2067 dbSNP
rs34953001 2068 dbSNP
rs398025681 2068 dbSNP
rs546262422 2068 dbSNP
rs1374376673 2076 dbSNP
rs955096708 2077 dbSNP
rs1048602065 2080 dbSNP
rs1169644383 2081 dbSNP
rs1228234490 2087 dbSNP
rs1031318817 2091 dbSNP
rs999468483 2093 dbSNP
rs143353710 2095 dbSNP
rs1470942788 2096 dbSNP
rs1337294527 2099 dbSNP
rs1403010947 2111 dbSNP
rs1395470637 2122 dbSNP
rs758271333 2137 dbSNP
rs752499307 2139 dbSNP
rs149719079 2140 dbSNP
rs1176947170 2141 dbSNP
rs1057371128 2149 dbSNP
rs1219447981 2162 dbSNP
rs1278018217 2168 dbSNP
rs1316435155 2171 dbSNP
rs1206198597 2180 dbSNP
rs1257031173 2181 dbSNP
rs1198181027 2198 dbSNP
rs938708381 2198 dbSNP
rs72627143 2203 dbSNP
rs1421621404 2204 dbSNP
rs1192447270 2210 dbSNP
rs1012299005 2215 dbSNP
rs1421281502 2217 dbSNP
rs376872613 2222 dbSNP
rs947484841 2224 dbSNP
rs1363753526 2229 dbSNP
rs1056584556 2230 dbSNP
rs1465638475 2231 dbSNP
rs985968427 2233 dbSNP
rs1424314122 2237 dbSNP
rs548777080 2244 dbSNP
rs1297818138 2247 dbSNP
rs1338910061 2256 dbSNP
rs1225668548 2268 dbSNP
rs149182496 2268 dbSNP
rs1312082243 2272 dbSNP
rs1231669724 2273 dbSNP
rs1262024414 2282 dbSNP
rs1030693295 2285 dbSNP
rs766951470 2286 dbSNP
rs1474932944 2288 dbSNP
rs1263496951 2291 dbSNP
rs758847479 2294 dbSNP
rs1048419763 2295 dbSNP
rs1260521637 2300 dbSNP
rs1490786610 2300 dbSNP
rs1218302617 2302 dbSNP
rs976007924 2308 dbSNP
rs1431417421 2310 dbSNP
rs1161184164 2312 dbSNP
rs930906181 2315 dbSNP
rs1221567723 2317 dbSNP
rs1158286262 2336 dbSNP
rs750733573 2340 dbSNP
rs1005855857 2342 dbSNP
rs1039177480 2348 dbSNP
rs943576761 2351 dbSNP
rs1309778921 2352 dbSNP
rs562971662 2352 dbSNP
rs1353800294 2353 dbSNP
rs765445987 2353 dbSNP
rs762083036 2354 dbSNP
rs1361210991 2355 dbSNP
rs1013534043 2356 dbSNP
rs986590801 2359 dbSNP
rs776626562 2365 dbSNP
rs1178886352 2374 dbSNP
rs1238654626 2382 dbSNP
rs1402053474 2383 dbSNP
rs1440422094 2396 dbSNP
rs1343781740 2400 dbSNP
rs1158080625 2401 dbSNP
rs1378518209 2403 dbSNP
rs1407342617 2404 dbSNP
rs923644426 2405 dbSNP
rs978378491 2407 dbSNP
rs1349728238 2409 dbSNP
rs1456649250 2415 dbSNP
rs1333981736 2432 dbSNP
rs3742815 2440 dbSNP
rs1022260100 2441 dbSNP
rs760710744 2449 dbSNP
rs775432796 2451 dbSNP
rs1306521436 2452 dbSNP
rs1044591 2454 dbSNP
rs1380690701 2456 dbSNP
rs1228599030 2463 dbSNP
rs959219618 2465 dbSNP
rs1168186671 2468 dbSNP
rs1319720185 2470 dbSNP
rs1409198734 2471 dbSNP
rs532644773 2472 dbSNP
rs1258664279 2473 dbSNP
rs1003647310 2475 dbSNP
rs1457292798 2480 dbSNP
rs886407227 2492 dbSNP
rs1195475847 2495 dbSNP
rs1236491367 2509 dbSNP
rs1026318754 2520 dbSNP
rs1473813068 2537 dbSNP
rs994839458 2552 dbSNP
rs1267653837 2553 dbSNP
rs1041705540 2556 dbSNP
rs1173329012 2561 dbSNP
rs1422471933 2561 dbSNP
rs1401459031 2569 dbSNP
rs947388945 2570 dbSNP
rs1191284739 2571 dbSNP
rs372052433 2573 dbSNP
rs914695268 2573 dbSNP
rs899419152 2576 dbSNP
rs986220737 2583 dbSNP
rs1460543992 2588 dbSNP
rs1317743313 2595 dbSNP
rs1039290395 2599 dbSNP
rs1376464789 2601 dbSNP
rs1220053667 2625 dbSNP
rs931832859 2626 dbSNP
rs184812767 2629 dbSNP
rs1259094202 2630 dbSNP
rs117853353 2631 dbSNP
rs1321674122 2633 dbSNP
rs1300776586 2636 dbSNP
rs1210860473 2639 dbSNP
rs11622390 2649 dbSNP
rs1236948509 2650 dbSNP
rs1471963283 2657 dbSNP
rs1196106749 2661 dbSNP
rs1387458719 2669 dbSNP
rs1424873275 2671 dbSNP
rs1210230896 2672 dbSNP
rs1477662575 2677 dbSNP
rs3742816 2678 dbSNP
rs961962087 2680 dbSNP
rs1445941807 2682 dbSNP
rs907753925 2688 dbSNP
rs759327110 2689 dbSNP
rs1467988122 2690 dbSNP
rs984493677 2693 dbSNP
rs1376734889 2696 dbSNP
rs951683500 2699 dbSNP
rs193052521 2707 dbSNP
rs1216504448 2709 dbSNP
rs1276566057 2712 dbSNP
rs1345685605 2713 dbSNP
rs141056889 2714 dbSNP
rs1278081235 2715 dbSNP
rs1247775626 2717 dbSNP
rs1011978315 2718 dbSNP
rs188063995 2720 dbSNP
rs1488181796 2730 dbSNP
rs960710339 2731 dbSNP
rs923562225 2733 dbSNP
rs1248786558 2735 dbSNP
rs977749454 2736 dbSNP
rs1478670277 2737 dbSNP
rs3742817 2743 dbSNP
rs915146871 2745 dbSNP
rs1422528516 2748 dbSNP
rs1420911258 2765 dbSNP
rs1035873281 2775 dbSNP
rs990756993 2787 dbSNP
rs774189194 2789 dbSNP
rs530766227 2796 dbSNP
rs982567988 2797 dbSNP
rs1325340748 2799 dbSNP
rs1331463563 2804 dbSNP
rs374982209 2808 dbSNP
rs950829337 2812 dbSNP
rs1026851905 2828 dbSNP
rs1272934490 2832 dbSNP
rs1345836682 2842 dbSNP
rs558328383 2842 dbSNP
rs1242346936 2845 dbSNP
rs1287051039 2853 dbSNP
rs903486890 2854 dbSNP
rs994786288 2861 dbSNP
rs1269989319 2862 dbSNP
rs748946834 2871 dbSNP
rs139564405 2872 dbSNP
rs1251610707 2883 dbSNP
rs1441022653 2885 dbSNP
rs1178670005 2893 dbSNP
rs1255671544 2896 dbSNP
rs1164636766 2901 dbSNP
rs1234211372 2903 dbSNP
rs572580716 2904 dbSNP
rs1391199698 2905 dbSNP
rs893121894 2914 dbSNP
rs1050835853 2916 dbSNP
rs1017789128 2927 dbSNP
rs1378974085 2929 dbSNP
rs1447390183 2940 dbSNP
rs1007779408 2941 dbSNP
rs1310138379 2948 dbSNP
rs146510348 2954 dbSNP
rs890586503 2956 dbSNP
rs1051940533 2959 dbSNP
rs1267386442 2971 dbSNP
rs1357509238 2973 dbSNP
rs1271857086 2976 dbSNP
rs923317021 2976 dbSNP
rs1459508941 2978 dbSNP
rs934862841 2992 dbSNP
rs1377578520 3003 dbSNP
rs902253131 3006 dbSNP
rs1333234331 3007 dbSNP
rs141646770 3008 dbSNP
rs1042189959 3011 dbSNP
rs1040208225 3015 dbSNP
rs1472362418 3023 dbSNP
rs946344998 3026 dbSNP
rs914927194 3027 dbSNP
rs1303115624 3037 dbSNP
rs1402168207 3045 dbSNP
rs940502360 3046 dbSNP
rs907826160 3051 dbSNP
rs990704888 3061 dbSNP
rs1389682097 3062 dbSNP
rs552955057 3067 dbSNP
rs1467246625 3069 dbSNP
rs937949434 3077 dbSNP
rs1361628299 3081 dbSNP
rs1244290859 3088 dbSNP
rs984692842 3095 dbSNP
rs927911411 3101 dbSNP
rs1219793668 3103 dbSNP
rs1381498725 3108 dbSNP
rs1181019164 3110 dbSNP
rs1257917855 3120 dbSNP
rs1479387200 3125 dbSNP
rs535836349 3127 dbSNP
rs1201635507 3132 dbSNP
rs777186994 3167 dbSNP
rs765994254 3175 dbSNP
rs1029704 3184 dbSNP
rs569146615 3213 dbSNP
rs1484363856 3216 dbSNP
rs1259130317 3220 dbSNP
rs548549992 3222 dbSNP
rs565081271 3227 dbSNP
rs3169005 3230 dbSNP
rs1311417708 3235 dbSNP
rs772858416 3245 dbSNP
rs1402970256 3248 dbSNP
rs1017567904 3251 dbSNP
rs1035181245 3253 dbSNP
rs747605168 3255 dbSNP
rs1339712588 3269 dbSNP
rs1313155585 3270 dbSNP
rs192569342 3273 dbSNP
rs1382342020 3274 dbSNP
rs1256132054 3283 dbSNP
rs1343666957 3284 dbSNP
rs967508107 3289 dbSNP
rs3177205 3290 dbSNP
rs954980021 3296 dbSNP
rs1297147204 3298 dbSNP
rs1031034409 3306 dbSNP
rs532684662 3307 dbSNP
rs1161038407 3318 dbSNP
rs903370760 3320 dbSNP
rs375502473 3321 dbSNP
rs1378284063 3326 dbSNP
rs758971059 3328 dbSNP
rs750189521 3332 dbSNP
rs1042134282 3336 dbSNP
rs546989439 3339 dbSNP
rs750811995 3344 dbSNP
rs146784065 3345 dbSNP
rs1400807105 3347 dbSNP
rs561241250 3349 dbSNP
rs1389096991 3351 dbSNP
rs377199385 3351 dbSNP
rs1302500032 3352 dbSNP
rs544148189 3354 dbSNP
rs17094316 3355 dbSNP
rs1488684408 3390 dbSNP
rs1287758000 3400 dbSNP
rs1354020558 3400 dbSNP
rs1054794804 3406 dbSNP
rs767461897 3407 dbSNP
rs907688593 3407 dbSNP
rs937709602 3409 dbSNP
rs1258801814 3416 dbSNP
rs1489302561 3420 dbSNP
rs1343694665 3421 dbSNP
rs17111887 3424 dbSNP
rs1046771230 3426 dbSNP
rs930559170 3429 dbSNP
rs757464058 3437 dbSNP
rs1382227965 3450 dbSNP
rs1158648058 3454 dbSNP
rs1420607630 3454 dbSNP
rs1343805840 3458 dbSNP
rs916447335 3459 dbSNP
rs575176709 3460 dbSNP
rs564765680 3461 dbSNP
rs551842276 3463 dbSNP
rs1370854366 3480 dbSNP
rs764255836 3481 dbSNP
rs939008724 3484 dbSNP
rs1238983604 3488 dbSNP
rs73301429 3492 dbSNP
rs910674575 3500 dbSNP
rs1324428458 3517 dbSNP
rs572909334 3522 dbSNP
rs977794403 3526 dbSNP
rs1467123516 3531 dbSNP
rs1200444987 3533 dbSNP
rs1240180326 3537 dbSNP
rs986140624 3538 dbSNP
rs1176848259 3540 dbSNP
rs1405998008 3541 dbSNP
rs1425954567 3542 dbSNP
rs1165978011 3544 dbSNP
rs1394176548 3544 dbSNP
rs990245354 3548 dbSNP
rs1400410771 3549 dbSNP
rs1400214858 3552 dbSNP
rs1158629614 3553 dbSNP
rs1341908439 3554 dbSNP
rs760753761 3557 dbSNP
rs878898288 3558 dbSNP
rs546671561 3559 dbSNP
rs1292514588 3562 dbSNP
rs1332410959 3566 dbSNP
rs1030564220 3569 dbSNP
rs1029655473 3570 dbSNP
rs1458286547 3570 dbSNP
rs1203852547 3571 dbSNP
rs1390677583 3573 dbSNP
rs1484387577 3583 dbSNP
rs1182650426 3586 dbSNP
rs1417676119 3596 dbSNP
rs752703215 3597 dbSNP
rs1173485327 3603 dbSNP
rs1474398604 3603 dbSNP
rs996225314 3608 dbSNP
rs1409866473 3615 dbSNP
rs187190913 3625 dbSNP
rs1326342987 3631 dbSNP
rs901828158 3637 dbSNP
rs1448390041 3638 dbSNP
rs1019051511 3641 dbSNP
rs1004986401 3646 dbSNP
rs999528624 3647 dbSNP
rs116563548 3648 dbSNP
rs1021807776 3650 dbSNP
rs573599968 3653 dbSNP
rs1478266511 3662 dbSNP
rs759501929 3670 dbSNP
rs1211872546 3673 dbSNP
rs1257018219 3684 dbSNP
rs1484914602 3688 dbSNP
rs1265524468 3691 dbSNP
rs546332923 3693 dbSNP
rs893553841 3699 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HEK293S
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in GSM1084065. RNA binding protein: AGO2. Condition:CLIP_emetine_AbnovaAb HITS-CLIP data was present in GSM1084066. RNA binding protein: AGO2. Condition:CLIP_noemetine_SantaCruzAb HITS-CLIP data was present in GSM1084067. RNA binding protein: AGO2. Condition:CLIP_emetine_SantaCruzAb HITS-CLIP data was present in GSM1084073. RNA binding protein: AGO2. Condition:CLIP_hippuristanol_rep1_AbnovaAb HITS-CLIP data was present in GSM1084074. RNA binding protein: AGO2. Condition:CLIP_nohippuristanol_rep1_SantaCruzAb ...

- Karginov FV; Hannon GJ, 2013, Genes & development.

Article - Karginov FV; Hannon GJ
- Genes & development, 2013
When adapting to environmental stress, cells attenuate and reprogram their translational output. In part, these altered translation profiles are established through changes in the interactions between RNA-binding proteins and mRNAs. The Argonaute 2 (Ago2)/microRNA (miRNA) machinery has been shown to participate in stress-induced translational up-regulation of a particular mRNA, CAT-1; however, a detailed, transcriptome-wide understanding of the involvement of Ago2 in the process has been lacking. Here, we profiled the overall changes in Ago2-mRNA interactions upon arsenite stress by cross-linking immunoprecipitation (CLIP) followed by high-throughput sequencing (CLIP-seq). Ago2 displayed a significant remodeling of its transcript occupancy, with the majority of 3' untranslated region (UTR) and coding sequence (CDS) sites exhibiting stronger interaction. Interestingly, target sites that were destined for release from Ago2 upon stress were depleted in miRNA complementarity signatures, suggesting an alternative mode of interaction. To compare the changes in Ago2-binding patterns across transcripts with changes in their translational states, we measured mRNA profiles on ribosome/polysome gradients by RNA sequencing (RNA-seq). Increased Ago2 occupancy correlated with stronger repression of translation for those mRNAs, as evidenced by a shift toward lighter gradient fractions upon stress, while release of Ago2 was associated with the limited number of transcripts that remained translated. Taken together, these data point to a role for Ago2 and the mammalian miRNAs in mediating the translational component of the stress response.
LinkOut: [PMID: 23824327]
CLIP-seq Support 1 for dataset GSM1084065
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_emetine_AbnovaAb
Location of target site ENST00000334696.6 | 3UTR | AGCCUCCUGAAGAGCUGGGAUUACAGGUGC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM1084066
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_noemetine_SantaCruzAb
Location of target site ENST00000334696.6 | 3UTR | UGAAGAGCUGGGAUUAC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
CLIP-seq Support 3 for dataset GSM1084067
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_emetine_SantaCruzAb
Location of target site ENST00000334696.6 | 3UTR | UGAAGAGCUGGGAUUAC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
CLIP-seq Support 4 for dataset GSM1084073
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_hippuristanol_rep1_AbnovaAb
Location of target site ENST00000334696.6 | 3UTR | UGAAGAGCUGGGAUUAC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
CLIP-seq Support 5 for dataset GSM1084074
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_nohippuristanol_rep1_SantaCruzAb
Location of target site ENST00000334696.6 | 3UTR | UGAAGAGCUGGGAUU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
256 hsa-miR-4433a-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT088097 SEPT2 septin 2 2 2
MIRT143134 MGRN1 mahogunin ring finger 1 2 2
MIRT153912 NCOA3 nuclear receptor coactivator 3 2 2
MIRT154894 GNAS GNAS complex locus 2 4
MIRT200996 ZNF805 zinc finger protein 805 2 2
MIRT215729 C5ORF51 chromosome 5 open reading frame 51 2 10
MIRT235593 POFUT1 protein O-fucosyltransferase 1 2 2
MIRT263250 SGPL1 sphingosine-1-phosphate lyase 1 2 2
MIRT317951 CDC5L cell division cycle 5 like 2 4
MIRT325572 HIATL1 major facilitator superfamily domain containing 14B 2 4
MIRT354739 LSM3 LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated 2 2
MIRT444552 UBE2D3 ubiquitin conjugating enzyme E2 D3 2 4
MIRT446978 SUSD5 sushi domain containing 5 2 2
MIRT451036 ZNF610 zinc finger protein 610 2 2
MIRT451596 TRPM7 transient receptor potential cation channel subfamily M member 7 2 2
MIRT452025 NLRP6 NLR family pyrin domain containing 6 2 2
MIRT452594 CA6 carbonic anhydrase 6 2 2
MIRT452768 TCEA3 transcription elongation factor A3 2 4
MIRT452959 ZNF844 zinc finger protein 844 2 2
MIRT453191 ACSF2 acyl-CoA synthetase family member 2 2 2
MIRT453382 RHD Rh blood group D antigen 2 2
MIRT453685 CEBPD CCAAT/enhancer binding protein delta 2 2
MIRT455272 DDX39B DExD-box helicase 39B 2 8
MIRT455346 BAMBI BMP and activin membrane bound inhibitor 2 2
MIRT456494 SERAC1 serine active site containing 1 2 2
MIRT456585 NID1 nidogen 1 2 2
MIRT456888 DDA1 DET1 and DDB1 associated 1 2 2
MIRT457123 APOLD1 apolipoprotein L domain containing 1 2 2
MIRT457852 ZNF324B zinc finger protein 324B 2 2
MIRT457987 APAF1 apoptotic peptidase activating factor 1 2 2
MIRT459278 APOBEC3F apolipoprotein B mRNA editing enzyme catalytic subunit 3F 2 2
MIRT459625 SLC25A33 solute carrier family 25 member 33 2 2
MIRT459715 SGK494 uncharacterized serine/threonine-protein kinase SgK494 2 2
MIRT460057 RPL22L1 ribosomal protein L22 like 1 2 2
MIRT460182 UNK unkempt family zinc finger 2 6
MIRT460288 PDE11A phosphodiesterase 11A 2 2
MIRT460841 EGF epidermal growth factor 2 4
MIRT460860 TBC1D19 TBC1 domain family member 19 2 2
MIRT461519 EMC7 ER membrane protein complex subunit 7 2 2
MIRT461729 SLC27A1 solute carrier family 27 member 1 2 4
MIRT461821 SNAP23 synaptosome associated protein 23 2 2
MIRT462066 CCDC77 coiled-coil domain containing 77 2 4
MIRT462084 MSANTD2 Myb/SANT DNA binding domain containing 2 2 2
MIRT462508 MTFMT mitochondrial methionyl-tRNA formyltransferase 2 10
MIRT464239 VCP valosin containing protein 2 2
MIRT465316 TRAF5 TNF receptor associated factor 5 2 2
MIRT466549 TBL1XR1 transducin beta like 1 X-linked receptor 1 2 2
MIRT467128 SRGAP1 SLIT-ROBO Rho GTPase activating protein 1 2 8
MIRT468091 SHCBP1 SHC binding and spindle associated 1 2 2
MIRT469630 RAD21 RAD21 cohesin complex component 2 6
MIRT471097 PIK3C2B phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 beta 2 2
MIRT472704 MYBL1 MYB proto-oncogene like 1 2 2
MIRT472830 MTMR10 myotubularin related protein 10 2 2
MIRT472872 MTHFD2 methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase 2 2
MIRT472895 MTDH metadherin 2 2
MIRT473728 MAPK1 mitogen-activated protein kinase 1 2 2
MIRT473859 MAP2K4 mitogen-activated protein kinase kinase 4 2 2
MIRT474047 LONRF1 LON peptidase N-terminal domain and ring finger 1 2 2
MIRT474297 LAMC1 laminin subunit gamma 1 2 2
MIRT474658 KLF13 Kruppel like factor 13 2 2
MIRT475234 IKZF3 IKAROS family zinc finger 3 2 2
MIRT475500 HSP90B1 heat shock protein 90 beta family member 1 2 2
MIRT475742 HERPUD1 homocysteine inducible ER protein with ubiquitin like domain 1 2 4
MIRT475793 HDGF heparin binding growth factor 2 2
MIRT477254 ERGIC2 ERGIC and golgi 2 2 2
MIRT478228 DDX52 DExD-box helicase 52 2 2
MIRT478393 DCTN5 dynactin subunit 5 2 2
MIRT478754 CS citrate synthase 2 2
MIRT478827 CRKL CRK like proto-oncogene, adaptor protein 2 4
MIRT480234 C9orf41 carnosine N-methyltransferase 1 2 2
MIRT480597 BTRC beta-transducin repeat containing E3 ubiquitin protein ligase 2 2
MIRT484121 C14orf142 GON7, KEOPS complex subunit homolog 2 2
MIRT484689 PACSIN1 protein kinase C and casein kinase substrate in neurons 1 2 2
MIRT486331 C11orf54 chromosome 11 open reading frame 54 2 4
MIRT488599 FAM3C family with sequence similarity 3 member C 2 8
MIRT488833 MRRF mitochondrial ribosome recycling factor 2 2
MIRT492523 RAB15 RAB15, member RAS oncogene family 2 4
MIRT493632 HIC2 HIC ZBTB transcriptional repressor 2 2 2
MIRT500026 ABCF2 ATP binding cassette subfamily F member 2 2 8
MIRT501075 SMAD7 SMAD family member 7 2 8
MIRT503094 BTG2 BTG anti-proliferation factor 2 2 4
MIRT503336 MMAB methylmalonic aciduria (cobalamin deficiency) cblB type 2 2
MIRT505465 STMN1 stathmin 1 2 4
MIRT505726 SERTAD3 SERTA domain containing 3 2 4
MIRT509333 MS4A4A membrane spanning 4-domains A4A 2 2
MIRT509978 KCNMB1 potassium calcium-activated channel subfamily M regulatory beta subunit 1 2 4
MIRT513068 CHST6 carbohydrate sulfotransferase 6 2 2
MIRT513446 EMP1 epithelial membrane protein 1 2 6
MIRT513736 PSD3 pleckstrin and Sec7 domain containing 3 2 4
MIRT513996 CENPQ centromere protein Q 2 4
MIRT516538 MIXL1 Mix paired-like homeobox 2 2
MIRT517606 SAV1 salvador family WW domain containing protein 1 2 2
MIRT518064 CEP89 centrosomal protein 89 2 2
MIRT518119 RNMTL1 mitochondrial rRNA methyltransferase 3 2 2
MIRT518325 WDR92 WD repeat domain 92 2 2
MIRT519048 ABCB11 ATP binding cassette subfamily B member 11 2 2
MIRT520972 SPPL2A signal peptide peptidase like 2A 2 4
MIRT521359 RPL35A ribosomal protein L35a 2 2
MIRT523359 GTF3C6 general transcription factor IIIC subunit 6 2 2
MIRT523801 FAM63A MINDY lysine 48 deubiquitinase 1 2 2
MIRT524622 C7orf73 short transmembrane mitochondrial protein 1 2 2
MIRT525550 PHB2 prohibitin 2 2 4
MIRT529709 ZBTB49 zinc finger and BTB domain containing 49 2 2
MIRT531605 PLEKHA6 pleckstrin homology domain containing A6 2 2
MIRT532387 UMPS uridine monophosphate synthetase 2 2
MIRT534468 SCD stearoyl-CoA desaturase 2 4
MIRT537546 ETNK1 ethanolamine kinase 1 2 2
MIRT541619 C11orf31 selenoprotein H 2 2
MIRT548380 ENPP5 ectonucleotide pyrophosphatase/phosphodiesterase 5 (putative) 2 4
MIRT549523 HDDC2 HD domain containing 2 2 2
MIRT549774 SOD2 superoxide dismutase 2 2 2
MIRT550578 SLC2A5 solute carrier family 2 member 5 2 2
MIRT551498 CENPN centromere protein N 2 4
MIRT552301 ITGA3 integrin subunit alpha 3 2 2
MIRT555400 PPM1L protein phosphatase, Mg2+/Mn2+ dependent 1L 2 2
MIRT556399 LUC7L LUC7 like 2 2
MIRT557047 HOXB3 homeobox B3 2 2
MIRT558072 ERO1L endoplasmic reticulum oxidoreductase 1 alpha 1 2
MIRT559659 AHCYL2 adenosylhomocysteinase like 2 2 2
MIRT561239 ZNF354B zinc finger protein 354B 2 2
MIRT566899 LRIG2 leucine rich repeats and immunoglobulin like domains 2 2 2
MIRT568786 FAM120B family with sequence similarity 120B 2 2
MIRT574014 MRPL12 mitochondrial ribosomal protein L12 2 2
MIRT574885 Dnajc6 DnaJ heat shock protein family (Hsp40) member C6 2 2
MIRT575243 Serping1 serine (or cysteine) peptidase inhibitor, clade G, member 1 2 2
MIRT576194 Vsig2 V-set and immunoglobulin domain containing 2 2 2
MIRT576309 Acbd7 acyl-Coenzyme A binding domain containing 7 2 2
MIRT576484 Lhx4 LIM homeobox protein 4 2 3
MIRT576646 Mill2 MHC I like leukocyte 2 1 1
MIRT576708 Kras Kirsten rat sarcoma viral oncogene homolog 2 2
MIRT576855 Socs6 suppressor of cytokine signaling 6 2 2
MIRT576950 Aldoa aldolase A, fructose-bisphosphate 2 2
MIRT617133 ZNF556 zinc finger protein 556 2 4
MIRT617928 ZNF783 zinc finger family member 783 2 2
MIRT618981 MRPS16 mitochondrial ribosomal protein S16 2 2
MIRT621100 SIX3 SIX homeobox 3 2 2
MIRT624537 BROX BRO1 domain and CAAX motif containing 2 2
MIRT625663 C2orf48 chromosome 2 open reading frame 48 2 2
MIRT627059 DCTN6 dynactin subunit 6 2 2
MIRT628319 CLPB ClpB homolog, mitochondrial AAA ATPase chaperonin 2 2
MIRT630859 ENTPD5 ectonucleoside triphosphate diphosphohydrolase 5 2 2
MIRT632295 TMEM65 transmembrane protein 65 2 2
MIRT634115 ZNF207 zinc finger protein 207 2 2
MIRT634736 CYP20A1 cytochrome P450 family 20 subfamily A member 1 2 2
MIRT635655 NDST3 N-deacetylase and N-sulfotransferase 3 2 2
MIRT635772 PDCL3 phosducin like 3 2 2
MIRT635911 LILRA2 leukocyte immunoglobulin like receptor A2 2 2
MIRT636365 OGFRL1 opioid growth factor receptor like 1 2 4
MIRT637251 GLRX2 glutaredoxin 2 2 2
MIRT638705 FZD4 frizzled class receptor 4 2 2
MIRT639640 PREX2 phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 2 2 2
MIRT639676 PPEF2 protein phosphatase with EF-hand domain 2 2 4
MIRT642267 SMIM17 small integral membrane protein 17 2 2
MIRT642372 ZNF581 zinc finger protein 581 2 2
MIRT643545 SLC25A17 solute carrier family 25 member 17 2 2
MIRT647994 PDE12 phosphodiesterase 12 2 2
MIRT649094 NOM1 nucleolar protein with MIF4G domain 1 2 2
MIRT650993 ZNF770 zinc finger protein 770 2 2
MIRT651956 UBE2N ubiquitin conjugating enzyme E2 N 2 2
MIRT652977 SUN2 Sad1 and UNC84 domain containing 2 2 2
MIRT654389 RBM12B RNA binding motif protein 12B 2 2
MIRT655637 OLFML2A olfactomedin like 2A 2 2
MIRT655729 NRXN3 neurexin 3 2 2
MIRT658171 FCHSD1 FCH and double SH3 domains 1 2 2
MIRT660937 ACOX1 acyl-CoA oxidase 1 2 2
MIRT662112 CERKL ceramide kinase like 2 2
MIRT662302 MPV17L MPV17 mitochondrial inner membrane protein like 2 2
MIRT662993 TMEM59 transmembrane protein 59 2 2
MIRT663071 SFR1 SWI5 dependent homologous recombination repair protein 1 2 2
MIRT663704 ABHD17B abhydrolase domain containing 17B 2 2
MIRT663864 MUC20 mucin 20, cell surface associated 2 2
MIRT665185 HAUS5 HAUS augmin like complex subunit 5 2 4
MIRT665402 WEE1 WEE1 G2 checkpoint kinase 2 2
MIRT665688 TNPO3 transportin 3 2 2
MIRT665795 TMEM170A transmembrane protein 170A 2 2
MIRT665847 TIAL1 TIA1 cytotoxic granule associated RNA binding protein like 1 2 2
MIRT666999 PDPN podoplanin 2 2
MIRT667598 LIPC lipase C, hepatic type 2 2
MIRT668576 ELMSAN1 ELM2 and Myb/SANT domain containing 1 2 4
MIRT670960 UGGT1 UDP-glucose glycoprotein glucosyltransferase 1 2 2
MIRT671187 ZNF891 zinc finger protein 891 2 2
MIRT671739 ZNF451 zinc finger protein 451 2 2
MIRT672745 ZNF585B zinc finger protein 585B 2 4
MIRT673446 ZNF583 zinc finger protein 583 2 2
MIRT679843 GPR75 G protein-coupled receptor 75 2 2
MIRT680556 ZNF584 zinc finger protein 584 2 2
MIRT680661 C1orf210 chromosome 1 open reading frame 210 2 2
MIRT681285 RFC2 replication factor C subunit 2 2 2
MIRT683264 ZNF329 zinc finger protein 329 2 2
MIRT684519 C1orf174 chromosome 1 open reading frame 174 2 2
MIRT685065 GEMIN4 gem nuclear organelle associated protein 4 2 2
MIRT685157 DTWD2 DTW domain containing 2 2 2
MIRT685168 ERCC1 ERCC excision repair 1, endonuclease non-catalytic subunit 2 2
MIRT685470 CACNG8 calcium voltage-gated channel auxiliary subunit gamma 8 2 2
MIRT686001 NEK4 NIMA related kinase 4 2 2
MIRT687027 RNF24 ring finger protein 24 2 2
MIRT687543 MOB1B MOB kinase activator 1B 2 2
MIRT687592 MANEAL mannosidase endo-alpha like 2 2
MIRT687753 KIAA1328 KIAA1328 2 2
MIRT688050 GLUL glutamate-ammonia ligase 2 2
MIRT688374 ENPP1 ectonucleotide pyrophosphatase/phosphodiesterase 1 2 2
MIRT688802 CBFA2T3 CBFA2/RUNX1 translocation partner 3 2 2
MIRT688957 ATXN3 ataxin 3 2 2
MIRT689281 C5AR2 complement component 5a receptor 2 2 2
MIRT689988 NNMT nicotinamide N-methyltransferase 2 2
MIRT689997 MMP17 matrix metallopeptidase 17 2 2
MIRT690014 LUZP2 leucine zipper protein 2 2 2
MIRT690161 ELP3 elongator acetyltransferase complex subunit 3 2 2
MIRT690379 ZSWIM7 zinc finger SWIM-type containing 7 2 2
MIRT690563 MICA MHC class I polypeptide-related sequence A 2 2
MIRT691891 EVC EvC ciliary complex subunit 1 2 2
MIRT693107 SCNM1 sodium channel modifier 1 2 2
MIRT693832 ZFP64 ZFP64 zinc finger protein 2 2
MIRT694105 ZNF446 zinc finger protein 446 2 2
MIRT694179 ZNF486 zinc finger protein 486 2 2
MIRT694475 LRTOMT leucine rich transmembrane and O-methyltransferase domain containing 2 2
MIRT694998 GGA2 golgi associated, gamma adaptin ear containing, ARF binding protein 2 2 2
MIRT695031 ALG10B ALG10B, alpha-1,2-glucosyltransferase 2 2
MIRT695163 TCTN2 tectonic family member 2 2 2
MIRT695525 SLC25A34 solute carrier family 25 member 34 2 2
MIRT696067 ZNF264 zinc finger protein 264 2 2
MIRT696616 CRIPT CXXC repeat containing interactor of PDZ3 domain 2 2
MIRT696661 AGXT2 alanine--glyoxylate aminotransferase 2 2 2
MIRT696705 PNPO pyridoxamine 5'-phosphate oxidase 2 2
MIRT697173 INMT indolethylamine N-methyltransferase 2 2
MIRT697303 ZNF652 zinc finger protein 652 2 2
MIRT697491 ZBTB8B zinc finger and BTB domain containing 8B 2 2
MIRT698657 TERF2 telomeric repeat binding factor 2 2 2
MIRT699042 SOAT1 sterol O-acyltransferase 1 2 2
MIRT699185 SLX4IP SLX4 interacting protein 2 2
MIRT699598 SHOC2 SHOC2, leucine rich repeat scaffold protein 2 2
MIRT700150 RNF115 ring finger protein 115 2 2
MIRT700720 PNO1 partner of NOB1 homolog 2 2
MIRT700870 PER2 period circadian clock 2 2 2
MIRT700912 PDXK pyridoxal kinase 2 2
MIRT701095 PAPOLG poly(A) polymerase gamma 2 2
MIRT701194 OTUD3 OTU deubiquitinase 3 2 2
MIRT702203 LPP LIM domain containing preferred translocation partner in lipoma 2 2
MIRT702272 LHX4 LIM homeobox 4 2 3
MIRT703125 GPRC5A G protein-coupled receptor class C group 5 member A 2 2
MIRT703252 GNS glucosamine (N-acetyl)-6-sulfatase 2 2
MIRT703262 GNL3L G protein nucleolar 3 like 2 2
MIRT703440 FYTTD1 forty-two-three domain containing 1 2 2
MIRT704321 DCUN1D5 defective in cullin neddylation 1 domain containing 5 2 2
MIRT704393 CTSS cathepsin S 2 2
MIRT704483 CPT1A carnitine palmitoyltransferase 1A 2 2
MIRT704880 CCSER2 coiled-coil serine rich protein 2 2 2
MIRT704926 CCDC36 coiled-coil domain containing 36 2 2
MIRT705175 BZW1 basic leucine zipper and W2 domains 1 2 2
MIRT706561 EIF2AK2 eukaryotic translation initiation factor 2 alpha kinase 2 2 2
MIRT707048 TRPV2 transient receptor potential cation channel subfamily V member 2 2 2
MIRT711497 PGD phosphogluconate dehydrogenase 2 2
MIRT716644 EPGN epithelial mitogen 2 2
MIRT720083 TNRC6B trinucleotide repeat containing 6B 2 2
MIRT722288 PMPCA peptidase, mitochondrial processing alpha subunit 2 2
MIRT725468 GRAP2 GRB2-related adaptor protein 2 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-4433a Dabrafenib 44462760 NSC764134 approved resistant cell line (A375)
hsa-mir-4433a Paclitaxel 36314 NSC125973 approved resistant cell line (W1)
hsa-mir-4433a Vincristine 5978 approved resistant cell line (W1)
hsa-mir-4433a Cisplatin 5460033 NSC119875 approved resistant cell line (BxPC3)
hsa-miR-4433a-3p Platinum 23939 sensitive High Ovarian Cancer tissue
hsa-miR-4433a-3p Imatinib 5291 NSC743414 approved sensitive High Gastrointestinal Stromal Tumor cell line (882R-NC, 882R-OE, 882R-KD)
hsa-miR-4433a-3p Cisplatin 5460033 NSC119875 approved resistant High Pancreatic Cancer cell line (BxPC-3)
hsa-miR-4433a-3p Paclitaxel 36314 NSC125973 approved resistant High Non-Small Cell Lung Cancer cell line (A549)
hsa-miR-4433a-3p Imatinib 5291 NSC743414 approved sensitive High Chronic Myelogenous Leukemia tissue
hsa-miR-4433a-3p Cisplatin 5460033 NSC119875 approved resistant High Ovarian Cancer cell line (A2780CIS)
hsa-miR-4433a-3p Cisplatin 5460033 NSC119875 approved sensitive cell line (CAL-27) (mitochondrial RNA)
hsa-miR-4433a-3p Paclitaxel 36314 NSC125973 approved resistant cell line (BAS)
hsa-miR-4433a-3p Cisplatin 5460033 NSC119875 approved resistant cell line (CP20)
hsa-miR-4433a-3p Cisplatin 5460033 NSC119875 approved resistant cell line (CIS)
hsa-miR-4433a-3p Neoadjuvant chemotherapy sensitive tissue (breast cancer)
hsa-miR-4433a-3p Gemcitabine 60750 NSC613327 approved sensitive cell line (PANC-1) (1500 ng/ml)
hsa-miR-4433a-3p Gemcitabine 60750 NSC613327 approved sensitive cell line (PANC-1) (100 ng/ml)

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