pre-miRNA Information
pre-miRNA hsa-mir-4282   
Genomic Coordinates chr6: 72967687 - 72967753
Description Homo sapiens miR-4282 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-4282
Sequence 40| UAAAAUUUGCAUCCAGGA |57
Evidence Experimental
Experiments SOLiD
DRVs in miRNA
Mutant ID Mutant Position Mutant Source
COSN32074657 13 COSMIC
COSN6331413 18 COSMIC
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1195771339 5 dbSNP
rs755058572 6 dbSNP
rs1245753664 11 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol RASSF9   
Synonyms P-CIP1, PAMCI, PCIP1
Description Ras association domain family member 9
Transcript NM_005447   
Expression
Putative miRNA Targets on RASSF9
3'UTR of RASSF9
(miRNA target sites are highlighted)
>RASSF9|NM_005447|3'UTR
   1 TTCCAATGGCTCCTTTCTGACCTGCTTTCATGTTTTAATGTTTGTTTAATTTAATAGGAAACCTCATTTTAAATATAACA
  81 CTCAAAAAAATGTAAATCATATTGTAGTATTCAATAGTTAATAAAAACTCGAGAAATGTGTTGTTTCTG
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' agGACCUACGUUUAAAAu 5'
            |||  | || :|||| 
Target 5' acCTGCTTTCATGTTTTa 3'
20 - 37 108.00 -7.60
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN30135102 25 COSMIC
COSN24312953 29 COSMIC
COSN30120358 68 COSMIC
COSN30674905 83 COSMIC
COSN28851355 84 COSMIC
COSN30458164 90 COSMIC
COSN30115714 97 COSMIC
COSN30110902 149 COSMIC
COSN30223195 206 COSMIC
COSN20473662 233 COSMIC
COSN32138501 350 COSMIC
COSN5868497 472 COSMIC
COSN14456136 823 COSMIC
COSN17393975 858 COSMIC
COSN25653761 892 COSMIC
COSN7385108 1439 COSMIC
COSN15671486 1478 COSMIC
COSN21925707 1621 COSMIC
COSN5330249 1698 COSMIC
COSN22331791 1814 COSMIC
COSN26689015 1935 COSMIC
COSN16439045 2016 COSMIC
COSN27519437 2065 COSMIC
COSN5330248 2091 COSMIC
COSN1590755 2568 COSMIC
COSN17081465 2635 COSMIC
COSN16355624 2670 COSMIC
COSN1590754 2798 COSMIC
COSN18006618 2873 COSMIC
COSN18012675 2879 COSMIC
COSN17979861 2884 COSMIC
COSN21135405 3015 COSMIC
COSN23576452 3233 COSMIC
COSN4732766 3358 COSMIC
COSN9480407 3369 COSMIC
COSN26847946 3461 COSMIC
rs140785266 2557 GWAS
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs372746320 3 dbSNP
rs1383127378 5 dbSNP
rs1273474924 12 dbSNP
rs1234747027 15 dbSNP
rs558049227 16 dbSNP
rs763518073 24 dbSNP
rs766841975 31 dbSNP
rs763344937 37 dbSNP
rs78844777 58 dbSNP
rs1349461783 75 dbSNP
rs999531264 76 dbSNP
rs1212975960 85 dbSNP
rs529521017 91 dbSNP
rs902531775 93 dbSNP
rs758951238 114 dbSNP
rs1485988647 120 dbSNP
rs750753540 130 dbSNP
rs1264977537 131 dbSNP
rs1453768799 132 dbSNP
rs1174221493 137 dbSNP
rs1014616295 138 dbSNP
rs1396762423 146 dbSNP
rs1039259270 151 dbSNP
rs895726623 154 dbSNP
rs539229139 169 dbSNP
rs937162331 179 dbSNP
rs1454488455 181 dbSNP
rs73381581 201 dbSNP
rs1272351438 208 dbSNP
rs757487076 209 dbSNP
rs753945202 232 dbSNP
rs189323835 233 dbSNP
rs1373754968 236 dbSNP
rs529399700 238 dbSNP
rs369014491 242 dbSNP
rs973926855 250 dbSNP
rs918269567 260 dbSNP
rs927152005 266 dbSNP
rs1298625168 267 dbSNP
rs1270842714 272 dbSNP
rs979978723 273 dbSNP
rs1329557655 274 dbSNP
rs1254813288 279 dbSNP
rs1468528332 280 dbSNP
rs557897222 284 dbSNP
rs144808523 285 dbSNP
rs1406295294 286 dbSNP
rs1370524397 293 dbSNP
rs944319877 298 dbSNP
rs1167211589 302 dbSNP
rs1431123078 303 dbSNP
rs1392493670 304 dbSNP
rs1032749795 306 dbSNP
rs1390188940 306 dbSNP
rs1397393958 307 dbSNP
rs1190120904 309 dbSNP
rs1440620775 311 dbSNP
rs745495651 313 dbSNP
rs1373470701 319 dbSNP
rs911475075 320 dbSNP
rs760795505 324 dbSNP
rs1476872244 325 dbSNP
rs528493243 327 dbSNP
rs1333621451 330 dbSNP
rs985637068 331 dbSNP
rs775730865 340 dbSNP
rs1248073630 341 dbSNP
rs1436056693 345 dbSNP
rs1203692590 351 dbSNP
rs1233345842 355 dbSNP
rs1009068457 356 dbSNP
rs140888802 362 dbSNP
rs1415960385 364 dbSNP
rs890718741 366 dbSNP
rs1032450512 369 dbSNP
rs1207140337 378 dbSNP
rs865977576 383 dbSNP
rs1048167483 385 dbSNP
rs1344413653 387 dbSNP
rs546495840 390 dbSNP
rs767542211 392 dbSNP
rs1355568330 396 dbSNP
rs1443750574 398 dbSNP
rs1310534308 400 dbSNP
rs978171908 404 dbSNP
rs1037790184 407 dbSNP
rs1294943244 411 dbSNP
rs1337236842 414 dbSNP
rs966806884 417 dbSNP
rs1213719824 423 dbSNP
rs1273643588 425 dbSNP
rs1439420976 429 dbSNP
rs531135418 440 dbSNP
rs376386197 445 dbSNP
rs146458771 448 dbSNP
rs1350197679 453 dbSNP
rs770693295 457 dbSNP
rs1034277519 472 dbSNP
rs1001426279 475 dbSNP
rs565719769 478 dbSNP
rs1474640386 480 dbSNP
rs1048238039 483 dbSNP
rs1420938663 485 dbSNP
rs1371702483 489 dbSNP
rs1171250421 490 dbSNP
rs11117040 491 dbSNP
rs1414821189 494 dbSNP
rs749123371 497 dbSNP
rs150289929 500 dbSNP
rs1324260049 503 dbSNP
rs539813839 506 dbSNP
rs73176558 507 dbSNP
rs1341445989 508 dbSNP
rs547236652 508 dbSNP
rs1279474422 516 dbSNP
rs910843488 525 dbSNP
rs955725372 526 dbSNP
rs769519597 531 dbSNP
rs1258540935 543 dbSNP
rs1172753434 554 dbSNP
rs1049979744 556 dbSNP
rs1192987318 565 dbSNP
rs936906705 577 dbSNP
rs1451919277 579 dbSNP
rs1033129945 583 dbSNP
rs1249262109 586 dbSNP
rs999861605 588 dbSNP
rs925484759 589 dbSNP
rs185867527 590 dbSNP
rs1184074039 592 dbSNP
rs575491907 602 dbSNP
rs557193611 604 dbSNP
rs780720042 605 dbSNP
rs1318772732 608 dbSNP
rs1209553274 614 dbSNP
rs1367136478 633 dbSNP
rs140098099 638 dbSNP
rs746432857 639 dbSNP
rs959415853 640 dbSNP
rs1281018458 641 dbSNP
rs1224290436 666 dbSNP
rs1235207297 670 dbSNP
rs1033658660 672 dbSNP
rs1348866687 673 dbSNP
rs1001473487 687 dbSNP
rs1286912309 694 dbSNP
rs994196069 695 dbSNP
rs1230601119 697 dbSNP
rs1212146035 702 dbSNP
rs1252924976 703 dbSNP
rs151106037 713 dbSNP
rs1200443971 716 dbSNP
rs1026852446 719 dbSNP
rs78984616 721 dbSNP
rs926713238 725 dbSNP
rs1459684867 726 dbSNP
rs534678867 727 dbSNP
rs1334406707 731 dbSNP
rs193078795 735 dbSNP
rs552320561 744 dbSNP
rs1303546697 745 dbSNP
rs896941429 748 dbSNP
rs1456438430 751 dbSNP
rs1238354534 754 dbSNP
rs1280371757 757 dbSNP
rs1331403676 758 dbSNP
rs535487000 759 dbSNP
rs1272931219 760 dbSNP
rs1469337533 763 dbSNP
rs1040807511 784 dbSNP
rs372529067 786 dbSNP
rs917104692 790 dbSNP
rs1248975484 793 dbSNP
rs187999458 794 dbSNP
rs1472776935 795 dbSNP
rs1436739140 799 dbSNP
rs182475554 802 dbSNP
rs988741675 808 dbSNP
rs1474015754 810 dbSNP
rs757492749 812 dbSNP
rs754256146 836 dbSNP
rs934575599 837 dbSNP
rs1459211057 841 dbSNP
rs548327335 844 dbSNP
rs1296402658 856 dbSNP
rs1482323121 856 dbSNP
rs530239696 858 dbSNP
rs1204375198 862 dbSNP
rs1352622916 872 dbSNP
rs1231662311 873 dbSNP
rs111484989 880 dbSNP
rs1008361903 882 dbSNP
rs1292861497 885 dbSNP
rs889467190 892 dbSNP
rs1049372966 893 dbSNP
rs936958939 908 dbSNP
rs1322723360 922 dbSNP
rs1247369577 923 dbSNP
rs1250135792 931 dbSNP
rs978410061 935 dbSNP
rs1464657593 936 dbSNP
rs1253321547 940 dbSNP
rs925537010 942 dbSNP
rs561418906 944 dbSNP
rs1257716074 967 dbSNP
rs61928916 970 dbSNP
rs1167973841 979 dbSNP
rs61029377 984 dbSNP
rs1169359481 1002 dbSNP
rs564101749 1002 dbSNP
rs918051660 1006 dbSNP
rs1412959783 1029 dbSNP
rs1312652202 1040 dbSNP
rs1380074305 1041 dbSNP
rs954901229 1044 dbSNP
rs1293861532 1045 dbSNP
rs1307469854 1046 dbSNP
rs1229744431 1087 dbSNP
rs879313316 1088 dbSNP
rs1345151680 1090 dbSNP
rs371521908 1101 dbSNP
rs1209460797 1105 dbSNP
rs1381963384 1113 dbSNP
rs1315212063 1116 dbSNP
rs1184623354 1117 dbSNP
rs959701011 1120 dbSNP
rs906000421 1124 dbSNP
rs926637788 1136 dbSNP
rs1393131530 1139 dbSNP
rs1386048952 1141 dbSNP
rs1173083047 1147 dbSNP
rs1322088459 1150 dbSNP
rs899427150 1161 dbSNP
rs1016250940 1179 dbSNP
rs1361732351 1181 dbSNP
rs1300468489 1193 dbSNP
rs1436217020 1193 dbSNP
rs1349026761 1194 dbSNP
rs1002188189 1195 dbSNP
rs545530754 1200 dbSNP
rs191852354 1201 dbSNP
rs1313639262 1205 dbSNP
rs1213173159 1207 dbSNP
rs952644465 1219 dbSNP
rs756450787 1220 dbSNP
rs1046509574 1227 dbSNP
rs1184335931 1228 dbSNP
rs1448901455 1231 dbSNP
rs546802897 1233 dbSNP
rs187039975 1234 dbSNP
rs1453709750 1242 dbSNP
rs1193138686 1249 dbSNP
rs1425917868 1260 dbSNP
rs1190694606 1263 dbSNP
rs535608703 1271 dbSNP
rs895610867 1273 dbSNP
rs367733296 1280 dbSNP
rs1322967461 1293 dbSNP
rs1219805750 1301 dbSNP
rs934565520 1307 dbSNP
rs59668915 1310 dbSNP
rs1293097140 1315 dbSNP
rs111250836 1317 dbSNP
rs1019842331 1318 dbSNP
rs925878403 1337 dbSNP
rs767775070 1340 dbSNP
rs142971782 1344 dbSNP
rs978670369 1345 dbSNP
rs1271012043 1352 dbSNP
rs372094084 1353 dbSNP
rs1222253071 1354 dbSNP
rs1227069122 1355 dbSNP
rs1248334019 1365 dbSNP
rs570896749 1367 dbSNP
rs552539497 1369 dbSNP
rs1362333284 1375 dbSNP
rs1473035115 1397 dbSNP
rs183050487 1401 dbSNP
rs759537977 1412 dbSNP
rs1299377466 1419 dbSNP
rs569972634 1420 dbSNP
rs548493728 1421 dbSNP
rs1027984803 1425 dbSNP
rs1382368643 1428 dbSNP
rs752918285 1433 dbSNP
rs61928914 1441 dbSNP
rs903498125 1442 dbSNP
rs766344673 1447 dbSNP
rs1439476015 1448 dbSNP
rs945597419 1458 dbSNP
rs1350777904 1461 dbSNP
rs1411237386 1470 dbSNP
rs559504721 1475 dbSNP
rs1291011387 1478 dbSNP
rs954624375 1485 dbSNP
rs896677074 1500 dbSNP
rs1057018980 1502 dbSNP
rs938109531 1505 dbSNP
rs926688709 1511 dbSNP
rs1366150269 1512 dbSNP
rs1228620392 1521 dbSNP
rs1026455266 1523 dbSNP
rs972661423 1536 dbSNP
rs140244136 1537 dbSNP
rs1483528648 1538 dbSNP
rs1184652730 1540 dbSNP
rs374249766 1543 dbSNP
rs1002490990 1547 dbSNP
rs1388331596 1564 dbSNP
rs1416659643 1565 dbSNP
rs544735678 1565 dbSNP
rs562324911 1565 dbSNP
rs1024983303 1567 dbSNP
rs1169180790 1570 dbSNP
rs1370667147 1571 dbSNP
rs919231097 1572 dbSNP
rs1190590267 1576 dbSNP
rs1429396981 1590 dbSNP
rs1310705598 1591 dbSNP
rs147925286 1594 dbSNP
rs972693484 1604 dbSNP
rs61928913 1608 dbSNP
rs61928912 1611 dbSNP
rs1285720906 1613 dbSNP
rs765387928 1624 dbSNP
rs1311050609 1625 dbSNP
rs1213890698 1631 dbSNP
rs1275218112 1639 dbSNP
rs577206801 1643 dbSNP
rs953841737 1667 dbSNP
rs199549959 1668 dbSNP
rs1442045002 1674 dbSNP
rs79846440 1675 dbSNP
rs1239544853 1681 dbSNP
rs574816428 1683 dbSNP
rs1311297060 1688 dbSNP
rs943295425 1694 dbSNP
rs553120685 1705 dbSNP
rs910186667 1709 dbSNP
rs1345849546 1712 dbSNP
rs1051393027 1713 dbSNP
rs933062163 1716 dbSNP
rs1401132885 1717 dbSNP
rs1407993187 1725 dbSNP
rs1335982275 1726 dbSNP
rs1343250160 1726 dbSNP
rs1429707623 1727 dbSNP
rs1372317233 1732 dbSNP
rs1367261494 1755 dbSNP
rs190823055 1756 dbSNP
rs1009848499 1759 dbSNP
rs1344627591 1762 dbSNP
rs1462533971 1769 dbSNP
rs1280937899 1770 dbSNP
rs776105324 1772 dbSNP
rs971868448 1775 dbSNP
rs896721869 1776 dbSNP
rs1451869377 1782 dbSNP
rs1174158810 1792 dbSNP
rs1191263444 1800 dbSNP
rs1376547790 1801 dbSNP
rs1173992362 1808 dbSNP
rs368313261 1808 dbSNP
rs1481629264 1810 dbSNP
rs577220878 1814 dbSNP
rs1181901333 1815 dbSNP
rs76912342 1827 dbSNP
rs537012053 1828 dbSNP
rs1254559519 1830 dbSNP
rs905326546 1833 dbSNP
rs1049186900 1847 dbSNP
rs930690131 1850 dbSNP
rs919287274 1853 dbSNP
rs1482618151 1854 dbSNP
rs530282511 1867 dbSNP
rs1330618074 1869 dbSNP
rs1233981093 1874 dbSNP
rs1276831213 1879 dbSNP
rs1348809497 1899 dbSNP
rs969636691 1901 dbSNP
rs1269141692 1914 dbSNP
rs376353321 1919 dbSNP
rs939994326 1928 dbSNP
rs912472119 1934 dbSNP
rs554578768 1939 dbSNP
rs1323801519 1942 dbSNP
rs536539612 1947 dbSNP
rs114454933 1953 dbSNP
rs768095925 1954 dbSNP
rs1352300028 1959 dbSNP
rs979175597 1961 dbSNP
rs1000989553 1965 dbSNP
rs547927164 1978 dbSNP
rs1329409920 1983 dbSNP
rs967760223 1987 dbSNP
rs1020650925 1990 dbSNP
rs1009642850 1997 dbSNP
rs1391276044 1998 dbSNP
rs1392058724 2006 dbSNP
rs1387488269 2010 dbSNP
rs1401510421 2011 dbSNP
rs1301317279 2014 dbSNP
rs960360856 2017 dbSNP
rs1471115783 2027 dbSNP
rs1348921776 2034 dbSNP
rs1409410560 2042 dbSNP
rs1289180944 2051 dbSNP
rs1430225803 2052 dbSNP
rs1331686701 2060 dbSNP
rs1231784176 2087 dbSNP
rs532607291 2088 dbSNP
rs1357654595 2092 dbSNP
rs1042881627 2098 dbSNP
rs374569982 2102 dbSNP
rs1247766307 2106 dbSNP
rs1482418698 2109 dbSNP
rs1182476006 2116 dbSNP
rs1253451394 2131 dbSNP
rs186720175 2141 dbSNP
rs1186568406 2147 dbSNP
rs1051710161 2151 dbSNP
rs144835961 2155 dbSNP
rs905378860 2170 dbSNP
rs1368829330 2182 dbSNP
rs370073310 2187 dbSNP
rs561601666 2188 dbSNP
rs1201663229 2198 dbSNP
rs1352488486 2202 dbSNP
rs1394724087 2221 dbSNP
rs779244298 2221 dbSNP
rs184188154 2237 dbSNP
rs1206622476 2238 dbSNP
rs1247662287 2248 dbSNP
rs1273045601 2251 dbSNP
rs1330886453 2252 dbSNP
rs1280078138 2262 dbSNP
rs1036409977 2271 dbSNP
rs944712868 2276 dbSNP
rs1243884852 2284 dbSNP
rs1036519386 2290 dbSNP
rs191901366 2291 dbSNP
rs749590608 2292 dbSNP
rs79340087 2300 dbSNP
rs1320087307 2301 dbSNP
rs1402207935 2304 dbSNP
rs932554739 2308 dbSNP
rs1389418903 2309 dbSNP
rs541178585 2309 dbSNP
rs1169297482 2310 dbSNP
rs576979570 2316 dbSNP
rs1372692159 2324 dbSNP
rs1464704605 2325 dbSNP
rs1302442696 2334 dbSNP
rs921127701 2336 dbSNP
rs1455990763 2338 dbSNP
rs778242969 2356 dbSNP
rs969604086 2366 dbSNP
rs967860564 2367 dbSNP
rs756403584 2371 dbSNP
rs913642002 2383 dbSNP
rs1365092845 2389 dbSNP
rs1228571764 2403 dbSNP
rs1159507128 2407 dbSNP
rs987873112 2410 dbSNP
rs1310119586 2411 dbSNP
rs1209029744 2417 dbSNP
rs1367215546 2418 dbSNP
rs558745354 2426 dbSNP
rs960665603 2431 dbSNP
rs68111333 2434 dbSNP
rs767825870 2435 dbSNP
rs1002479654 2436 dbSNP
rs1465282656 2440 dbSNP
rs576170273 2441 dbSNP
rs956910533 2445 dbSNP
rs1186216925 2446 dbSNP
rs1027864865 2448 dbSNP
rs535618993 2452 dbSNP
rs1467957805 2456 dbSNP
rs1318938521 2459 dbSNP
rs1388608706 2464 dbSNP
rs1001325285 2469 dbSNP
rs1323094148 2477 dbSNP
rs1364910632 2485 dbSNP
rs1218072648 2486 dbSNP
rs1301548725 2488 dbSNP
rs1313585438 2497 dbSNP
rs1284770022 2499 dbSNP
rs1267237340 2501 dbSNP
rs1465147614 2502 dbSNP
rs61928911 2507 dbSNP
rs566326190 2526 dbSNP
rs1244849886 2527 dbSNP
rs554185757 2529 dbSNP
rs61928910 2532 dbSNP
rs1008961711 2538 dbSNP
rs551273184 2542 dbSNP
rs1435102523 2543 dbSNP
rs1383547083 2547 dbSNP
rs140785266 2557 dbSNP
rs932606060 2558 dbSNP
rs1390695691 2561 dbSNP
rs921175317 2568 dbSNP
rs1319452679 2581 dbSNP
rs1435215880 2587 dbSNP
rs1052110228 2589 dbSNP
rs1369347245 2591 dbSNP
rs1043583006 2597 dbSNP
rs1407643839 2598 dbSNP
rs1287266018 2600 dbSNP
rs946548347 2604 dbSNP
rs913704593 2615 dbSNP
rs1287719174 2622 dbSNP
rs1321032982 2643 dbSNP
rs530610263 2647 dbSNP
rs186179056 2652 dbSNP
rs939095578 2662 dbSNP
rs1036035627 2665 dbSNP
rs539883347 2688 dbSNP
rs887543595 2689 dbSNP
rs1424760875 2690 dbSNP
rs180729328 2693 dbSNP
rs948187915 2705 dbSNP
rs1164914793 2708 dbSNP
rs969003750 2711 dbSNP
rs918124871 2723 dbSNP
rs992814985 2731 dbSNP
rs1350722157 2732 dbSNP
rs1476220790 2741 dbSNP
rs935607118 2750 dbSNP
rs1242314285 2760 dbSNP
rs1378397352 2764 dbSNP
rs1228853309 2766 dbSNP
rs1027917118 2780 dbSNP
rs973652901 2787 dbSNP
rs529722051 2789 dbSNP
rs1203033116 2793 dbSNP
rs1274274983 2799 dbSNP
rs1483497427 2807 dbSNP
rs968046921 2817 dbSNP
rs1236057025 2823 dbSNP
rs559564234 2824 dbSNP
rs1472645414 2834 dbSNP
rs1182961781 2838 dbSNP
rs1015076612 2856 dbSNP
rs1387556506 2859 dbSNP
rs1447207088 2864 dbSNP
rs1167396400 2865 dbSNP
rs540988947 2866 dbSNP
rs1341369456 2870 dbSNP
rs199655684 2873 dbSNP
rs1331741922 2874 dbSNP
rs199701643 2874 dbSNP
rs59320001 2874 dbSNP
rs1491146344 2875 dbSNP
rs78776045 2875 dbSNP
rs867237482 2879 dbSNP
rs79129263 2880 dbSNP
rs113435519 2881 dbSNP
rs1285893227 2883 dbSNP
rs1362944836 2884 dbSNP
rs1491381330 2884 dbSNP
rs58789521 2884 dbSNP
rs1276691781 2885 dbSNP
rs1343191227 2885 dbSNP
rs144403142 2885 dbSNP
rs71847149 2886 dbSNP
rs759169610 2886 dbSNP
rs766923403 2886 dbSNP
rs1406162963 2888 dbSNP
rs1370465381 2891 dbSNP
rs1028987664 2892 dbSNP
rs1390283834 2893 dbSNP
rs1411120075 2898 dbSNP
rs996133550 2900 dbSNP
rs1423954384 2901 dbSNP
rs530975483 2904 dbSNP
rs557673970 2905 dbSNP
rs539668510 2908 dbSNP
rs1434241905 2909 dbSNP
rs1030168295 2910 dbSNP
rs1476923657 2915 dbSNP
rs1366036908 2916 dbSNP
rs1043635269 2920 dbSNP
rs572140292 2921 dbSNP
rs1344562065 2923 dbSNP
rs1220221888 2927 dbSNP
rs1265348138 2930 dbSNP
rs946630765 2931 dbSNP
rs576081603 2932 dbSNP
rs1208670221 2933 dbSNP
rs372504615 2934 dbSNP
rs770499608 2936 dbSNP
rs939131252 2938 dbSNP
rs561057993 2939 dbSNP
rs1202563123 2940 dbSNP
rs1478139228 2942 dbSNP
rs1439584532 2946 dbSNP
rs927700951 2948 dbSNP
rs980483339 2950 dbSNP
rs1409528639 2951 dbSNP
rs1014979087 2954 dbSNP
rs1387042656 2955 dbSNP
rs1273988155 2956 dbSNP
rs1321641590 2958 dbSNP
rs542580858 2962 dbSNP
rs1405812209 2963 dbSNP
rs188591496 2964 dbSNP
rs1228099832 2965 dbSNP
rs1269400895 2970 dbSNP
rs61928909 2977 dbSNP
rs947822686 2978 dbSNP
rs538945129 2984 dbSNP
rs1451638545 2989 dbSNP
rs1056649872 2994 dbSNP
rs935560678 2996 dbSNP
rs924199864 2998 dbSNP
rs578224922 3003 dbSNP
rs1456297573 3009 dbSNP
rs979684492 3012 dbSNP
rs1390132591 3014 dbSNP
rs556789850 3015 dbSNP
rs1409667421 3016 dbSNP
rs1308137150 3018 dbSNP
rs1338089196 3019 dbSNP
rs1015544811 3020 dbSNP
rs565145506 3021 dbSNP
rs538442892 3023 dbSNP
rs569725308 3024 dbSNP
rs1224064713 3025 dbSNP
rs954835043 3026 dbSNP
rs1029039881 3027 dbSNP
rs548320577 3030 dbSNP
rs1407819518 3036 dbSNP
rs904549638 3038 dbSNP
rs545340466 3042 dbSNP
rs1186763406 3043 dbSNP
rs1368918377 3044 dbSNP
rs975958871 3044 dbSNP
rs1165535941 3045 dbSNP
rs1369004790 3046 dbSNP
rs565523872 3048 dbSNP
rs1429314132 3054 dbSNP
rs1472119996 3058 dbSNP
rs766180194 3062 dbSNP
rs1391538579 3063 dbSNP
rs879639885 3066 dbSNP
rs1334158655 3067 dbSNP
rs547410292 3073 dbSNP
rs547726772 3074 dbSNP
rs1227730043 3075 dbSNP
rs1233590247 3085 dbSNP
rs1252639594 3086 dbSNP
rs1011268712 3087 dbSNP
rs773141646 3093 dbSNP
rs1052738094 3094 dbSNP
rs939206900 3097 dbSNP
rs906336943 3099 dbSNP
rs1460186534 3107 dbSNP
rs1448893411 3111 dbSNP
rs1171415758 3113 dbSNP
rs1265193561 3115 dbSNP
rs1464906127 3117 dbSNP
rs1044856373 3118 dbSNP
rs1455080371 3119 dbSNP
rs1319072183 3120 dbSNP
rs1204743343 3123 dbSNP
rs1382230565 3124 dbSNP
rs532303249 3125 dbSNP
rs377164095 3129 dbSNP
rs1226047575 3131 dbSNP
rs999687780 3133 dbSNP
rs565189826 3138 dbSNP
rs1374680283 3140 dbSNP
rs1325374471 3147 dbSNP
rs1206771508 3150 dbSNP
rs902716096 3153 dbSNP
rs185269959 3162 dbSNP
rs181177668 3163 dbSNP
rs1384586424 3164 dbSNP
rs908119754 3165 dbSNP
rs988092383 3167 dbSNP
rs149551757 3168 dbSNP
rs750179629 3169 dbSNP
rs934045941 3171 dbSNP
rs1388540155 3173 dbSNP
rs974821229 3174 dbSNP
rs1453922437 3177 dbSNP
rs922690673 3180 dbSNP
rs765072560 3193 dbSNP
rs761608453 3195 dbSNP
rs1365100813 3205 dbSNP
rs776198519 3206 dbSNP
rs1385905607 3218 dbSNP
rs1022078063 3220 dbSNP
rs1347180592 3223 dbSNP
rs1386094098 3224 dbSNP
rs768324692 3233 dbSNP
rs961894462 3237 dbSNP
rs879525082 3239 dbSNP
rs1030930917 3240 dbSNP
rs1216635506 3241 dbSNP
rs1412943745 3244 dbSNP
rs1181393731 3255 dbSNP
rs1003439083 3260 dbSNP
rs1269785517 3261 dbSNP
rs984664948 3264 dbSNP
rs1180457102 3265 dbSNP
rs1411942572 3270 dbSNP
rs1420173177 3271 dbSNP
rs1161864493 3273 dbSNP
rs1347638992 3285 dbSNP
rs906388947 3286 dbSNP
rs951948399 3292 dbSNP
rs1044908780 3300 dbSNP
rs1023285212 3302 dbSNP
rs370667580 3311 dbSNP
rs145080613 3312 dbSNP
rs770676495 3312 dbSNP
rs1012039273 3316 dbSNP
rs3207496 3326 dbSNP
rs542692739 3329 dbSNP
rs960682290 3336 dbSNP
rs1221835941 3338 dbSNP
rs1292850488 3339 dbSNP
rs139248237 3342 dbSNP
rs1184372207 3346 dbSNP
rs1232696311 3347 dbSNP
rs1470689278 3353 dbSNP
rs1179482526 3359 dbSNP
rs1037819807 3360 dbSNP
rs1443555943 3361 dbSNP
rs1163652106 3372 dbSNP
rs1386747785 3372 dbSNP
rs560274993 3373 dbSNP
rs902642271 3389 dbSNP
rs1333804152 3395 dbSNP
rs1218364322 3396 dbSNP
rs1043881963 3400 dbSNP
rs190393733 3401 dbSNP
rs573281931 3405 dbSNP
rs185099966 3422 dbSNP
rs1360905842 3424 dbSNP
rs933554456 3431 dbSNP
rs538405941 3433 dbSNP
rs1433991594 3434 dbSNP
rs922132508 3437 dbSNP
rs1245402355 3442 dbSNP
rs1359411822 3449 dbSNP
rs1290460662 3450 dbSNP
rs1361630648 3458 dbSNP
rs748051908 3460 dbSNP
rs574305381 3465 dbSNP
rs1349254266 3466 dbSNP
rs760050448 3475 dbSNP
rs193280411 3485 dbSNP
rs556024495 3495 dbSNP
rs933993202 3502 dbSNP
rs1236296739 3503 dbSNP
rs1461235899 3505 dbSNP
rs922627819 3509 dbSNP
rs1162536662 3513 dbSNP
rs914664664 3523 dbSNP
rs1387237727 3535 dbSNP
rs535957458 3539 dbSNP
rs989273656 3541 dbSNP
rs73176553 3542 dbSNP
rs1449149617 3544 dbSNP
rs1036083184 3559 dbSNP
rs1259878108 3561 dbSNP
rs1173666549 3572 dbSNP
rs1358547481 3577 dbSNP
rs1188692742 3578 dbSNP
rs940100768 3578 dbSNP
rs1385104926 3579 dbSNP
rs150837060 3589 dbSNP
rs538639363 3594 dbSNP
rs1003491436 3595 dbSNP
rs1269903027 3601 dbSNP
rs1340307997 3610 dbSNP
rs1216743246 3633 dbSNP
rs1276983171 3638 dbSNP
rs549769712 3642 dbSNP
rs1463211958 3644 dbSNP
rs951884885 3645 dbSNP
rs1242387504 3647 dbSNP
rs916490495 3650 dbSNP
rs571175930 3662 dbSNP
rs1362215029 3665 dbSNP
rs1428365296 3669 dbSNP
rs1291946059 3679 dbSNP
rs1226997180 3681 dbSNP
rs1178510731 3684 dbSNP
rs1386361626 3697 dbSNP
rs1399091644 3700 dbSNP
rs1341013983 3713 dbSNP
rs1305443704 3719 dbSNP
rs539653157 3723 dbSNP
rs1327056411 3726 dbSNP
rs960401812 3733 dbSNP
rs1273238809 3734 dbSNP
rs1214962537 3735 dbSNP
rs1345275679 3739 dbSNP
rs1012091597 3741 dbSNP
rs1035100710 3743 dbSNP
rs999250886 3745 dbSNP
rs1366092297 3748 dbSNP
rs1303881843 3753 dbSNP
rs1284383185 3761 dbSNP
rs1461510621 3764 dbSNP
rs1371579547 3795 dbSNP
rs1267652060 3796 dbSNP
rs1480680915 3804 dbSNP
rs1172730226 3811 dbSNP
rs898957870 3822 dbSNP
rs1429488670 3824 dbSNP
rs1016026072 3837 dbSNP
rs1022395987 3839 dbSNP
rs1469539904 3842 dbSNP
rs1005014860 3844 dbSNP
rs1385776679 3855 dbSNP
rs886128423 3862 dbSNP
rs771308659 3866 dbSNP
rs1365173722 3872 dbSNP
rs1405986951 3886 dbSNP
rs1285546809 3887 dbSNP
rs1348972476 3888 dbSNP
rs1238989137 3894 dbSNP
rs1280590303 3897 dbSNP
rs889980829 3899 dbSNP
rs141827177 3905 dbSNP
rs1290658721 3909 dbSNP
rs900759320 3924 dbSNP
rs1490405855 3929 dbSNP
rs1224501819 3935 dbSNP
rs568512969 3945 dbSNP
rs190269434 3958 dbSNP
rs1182439653 3968 dbSNP
rs1365456471 3973 dbSNP
rs1471232333 3978 dbSNP
rs1161723737 3983 dbSNP
rs1384889021 3994 dbSNP
rs746121945 3995 dbSNP
rs1305136974 3996 dbSNP
rs914702705 3997 dbSNP
rs1479341978 3999 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HEK293S
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in GSM1084073. RNA binding protein: AGO2. Condition:CLIP_hippuristanol_rep1_AbnovaAb ...

- Karginov FV; Hannon GJ, 2013, Genes & development.

Article - Karginov FV; Hannon GJ
- Genes & development, 2013
When adapting to environmental stress, cells attenuate and reprogram their translational output. In part, these altered translation profiles are established through changes in the interactions between RNA-binding proteins and mRNAs. The Argonaute 2 (Ago2)/microRNA (miRNA) machinery has been shown to participate in stress-induced translational up-regulation of a particular mRNA, CAT-1; however, a detailed, transcriptome-wide understanding of the involvement of Ago2 in the process has been lacking. Here, we profiled the overall changes in Ago2-mRNA interactions upon arsenite stress by cross-linking immunoprecipitation (CLIP) followed by high-throughput sequencing (CLIP-seq). Ago2 displayed a significant remodeling of its transcript occupancy, with the majority of 3' untranslated region (UTR) and coding sequence (CDS) sites exhibiting stronger interaction. Interestingly, target sites that were destined for release from Ago2 upon stress were depleted in miRNA complementarity signatures, suggesting an alternative mode of interaction. To compare the changes in Ago2-binding patterns across transcripts with changes in their translational states, we measured mRNA profiles on ribosome/polysome gradients by RNA sequencing (RNA-seq). Increased Ago2 occupancy correlated with stronger repression of translation for those mRNAs, as evidenced by a shift toward lighter gradient fractions upon stress, while release of Ago2 was associated with the limited number of transcripts that remained translated. Taken together, these data point to a role for Ago2 and the mammalian miRNAs in mediating the translational component of the stress response.
LinkOut: [PMID: 23824327]
CLIP-seq Support 1 for dataset GSM1084073
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_hippuristanol_rep1_AbnovaAb
Location of target site ENST00000361228.3 | 3UTR | UAGAGGUUUGUAGCUUU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
280 hsa-miR-4282 Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT057628 LCOR ligand dependent nuclear receptor corepressor 2 2
MIRT060732 RPS3 ribosomal protein S3 2 2
MIRT063371 ETNK1 ethanolamine kinase 1 2 2
MIRT066257 LRIG3 leucine rich repeats and immunoglobulin like domains 3 2 4
MIRT070774 HIF1A hypoxia inducible factor 1 alpha subunit 2 2
MIRT070871 EIF2S1 eukaryotic translation initiation factor 2 subunit alpha 2 4
MIRT078056 PCTP phosphatidylcholine transfer protein 2 2
MIRT078408 DCAF7 DDB1 and CUL4 associated factor 7 2 4
MIRT084059 PPP1R3D protein phosphatase 1 regulatory subunit 3D 2 2
MIRT093537 GALNT7 polypeptide N-acetylgalactosaminyltransferase 7 2 6
MIRT096072 SFXN1 sideroflexin 1 2 2
MIRT098316 REV3L REV3 like, DNA directed polymerase zeta catalytic subunit 2 2
MIRT100493 UHRF1BP1 UHRF1 binding protein 1 2 2
MIRT102254 HBP1 HMG-box transcription factor 1 2 4
MIRT105318 VPS37A VPS37A, ESCRT-I subunit 2 2
MIRT114143 MZT1 mitotic spindle organizing protein 1 2 4
MIRT114873 DICER1 dicer 1, ribonuclease III 2 2
MIRT134683 PNRC2 proline rich nuclear receptor coactivator 2 2 2
MIRT137640 RCOR1 REST corepressor 1 2 2
MIRT155449 CCNT2 cyclin T2 2 4
MIRT165656 DCTN4 dynactin subunit 4 2 2
MIRT177570 CSTF2T cleavage stimulation factor subunit 2 tau variant 2 4
MIRT188514 E2F7 E2F transcription factor 7 2 10
MIRT193019 TMOD3 tropomodulin 3 2 4
MIRT195823 GADD45A growth arrest and DNA damage inducible alpha 2 2
MIRT195885 DEPDC1 DEP domain containing 1 2 6
MIRT206029 NUP50 nucleoporin 50 2 6
MIRT212148 CLCN3 chloride voltage-gated channel 3 2 2
MIRT213999 DCP2 decapping mRNA 2 2 2
MIRT214650 HNRNPA0 heterogeneous nuclear ribonucleoprotein A0 2 2
MIRT221568 CBX3 chromobox 3 2 2
MIRT224544 ZNF623 zinc finger protein 623 2 2
MIRT227654 SET SET nuclear proto-oncogene 2 2
MIRT229992 CHIC1 cysteine rich hydrophobic domain 1 2 2
MIRT238968 QKI QKI, KH domain containing RNA binding 2 2
MIRT239825 ACTB actin beta 2 2
MIRT241084 ZXDA zinc finger, X-linked, duplicated A 2 4
MIRT244852 ZBTB5 zinc finger and BTB domain containing 5 2 2
MIRT264534 TARDBP TAR DNA binding protein 2 2
MIRT271438 SKI SKI proto-oncogene 2 2
MIRT271597 ENAH ENAH, actin regulator 2 2
MIRT294332 ZNF264 zinc finger protein 264 2 2
MIRT296341 PARD6B par-6 family cell polarity regulator beta 2 2
MIRT301715 TEF TEF, PAR bZIP transcription factor 2 2
MIRT308549 ZNF654 zinc finger protein 654 2 2
MIRT313866 DEPDC1B DEP domain containing 1B 2 2
MIRT315529 MARCKS myristoylated alanine rich protein kinase C substrate 2 2
MIRT321066 RABGEF1 RAB guanine nucleotide exchange factor 1 2 2
MIRT343777 NUTF2 nuclear transport factor 2 2 2
MIRT359109 MAP1B microtubule associated protein 1B 2 2
MIRT397393 GOLGA3 golgin A3 2 4
MIRT400822 CPEB2 cytoplasmic polyadenylation element binding protein 2 2 2
MIRT442171 DSEL dermatan sulfate epimerase-like 2 2
MIRT442777 JAG1 jagged 1 2 2
MIRT442862 SCARF1 scavenger receptor class F member 1 2 4
MIRT442919 PCBD2 pterin-4 alpha-carbinolamine dehydratase 2 2 2
MIRT444567 TRA2B transformer 2 beta homolog 2 2
MIRT444718 CMSS1 cms1 ribosomal small subunit homolog (yeast) 2 2
MIRT445018 RBMS3 RNA binding motif single stranded interacting protein 3 2 2
MIRT445853 LRRC1 leucine rich repeat containing 1 2 2
MIRT446242 HELZ helicase with zinc finger 2 2
MIRT446542 GOLGA8B golgin A8 family member B 2 2
MIRT446643 SPTY2D1 SPT2 chromatin protein domain containing 1 2 2
MIRT446948 ZMAT3 zinc finger matrin-type 3 2 4
MIRT447061 KCNAB1 potassium voltage-gated channel subfamily A member regulatory beta subunit 1 2 2
MIRT447327 ZSCAN21 zinc finger and SCAN domain containing 21 2 2
MIRT447995 CDX1 caudal type homeobox 1 2 2
MIRT448543 RHEBP1 RHEB pseudogene 1 2 6
MIRT448752 HINT1 histidine triad nucleotide binding protein 1 2 2
MIRT448772 GOLGA8A golgin A8 family member A 2 2
MIRT449342 WDR26 WD repeat domain 26 2 2
MIRT450011 SLC16A6 solute carrier family 16 member 6 2 4
MIRT450229 PCNX pecanex homolog 1 2 2
MIRT450340 MRPL17 mitochondrial ribosomal protein L17 2 4
MIRT450381 MSI2 musashi RNA binding protein 2 2 2
MIRT450759 PGGT1B protein geranylgeranyltransferase type I subunit beta 2 2
MIRT450809 NRCAM neuronal cell adhesion molecule 2 2
MIRT450947 ATAD2 ATPase family, AAA domain containing 2 2 2
MIRT459095 CCPG1 cell cycle progression 1 2 2
MIRT462428 TWISTNB TWIST neighbor 2 2
MIRT465200 TROVE2 TROVE domain family member 2 2 4
MIRT467382 SON SON DNA binding protein 2 4
MIRT468546 SERP1 stress associated endoplasmic reticulum protein 1 2 2
MIRT471506 PDE4D phosphodiesterase 4D 2 2
MIRT471981 NR3C1 nuclear receptor subfamily 3 group C member 1 2 2
MIRT474478 KLHL11 kelch like family member 11 2 8
MIRT475011 KANSL1 KAT8 regulatory NSL complex subunit 1 2 8
MIRT480341 C5orf51 chromosome 5 open reading frame 51 2 2
MIRT482696 TEX9 testis expressed 9 2 6
MIRT483462 YTHDF1 YTH N6-methyladenosine RNA binding protein 1 2 6
MIRT485623 FAM217B family with sequence similarity 217 member B 2 2
MIRT485714 CASP16 caspase 16, pseudogene 2 8
MIRT486279 SEC23A Sec23 homolog A, coat complex II component 2 2
MIRT491000 PEBP1 phosphatidylethanolamine binding protein 1 2 4
MIRT492594 PPIL4 peptidylprolyl isomerase like 4 2 2
MIRT493365 KIF5B kinesin family member 5B 2 2
MIRT494316 CDKN1B cyclin dependent kinase inhibitor 1B 2 2
MIRT495208 EDN3 endothelin 3 2 2
MIRT497011 TCF15 transcription factor 15 2 2
MIRT498512 FRK fyn related Src family tyrosine kinase 2 2
MIRT498778 PARP15 poly(ADP-ribose) polymerase family member 15 2 2
MIRT501045 SMG1 SMG1, nonsense mediated mRNA decay associated PI3K related kinase 2 6
MIRT502939 CDC37L1 cell division cycle 37 like 1 2 8
MIRT504806 VHL von Hippel-Lindau tumor suppressor 2 6
MIRT505656 SHMT1 serine hydroxymethyltransferase 1 2 6
MIRT505964 RAB5C RAB5C, member RAS oncogene family 2 6
MIRT506322 OTUD4 OTU deubiquitinase 4 2 4
MIRT506803 KLHL15 kelch like family member 15 2 6
MIRT506917 KBTBD8 kelch repeat and BTB domain containing 8 2 4
MIRT507400 EMC7 ER membrane protein complex subunit 7 2 8
MIRT507471 EDEM3 ER degradation enhancing alpha-mannosidase like protein 3 2 6
MIRT508058 ATP13A3 ATPase 13A3 2 4
MIRT508135 AMD1 adenosylmethionine decarboxylase 1 2 2
MIRT509895 RPS23 ribosomal protein S23 2 4
MIRT510881 RAN RAN, member RAS oncogene family 2 8
MIRT513766 PEX5L peroxisomal biogenesis factor 5 like 2 4
MIRT516898 COPS8 COP9 signalosome subunit 8 2 2
MIRT518703 TIMD4 T-cell immunoglobulin and mucin domain containing 4 2 4
MIRT520429 TTPAL alpha tocopherol transfer protein like 2 6
MIRT521843 PNISR PNN interacting serine and arginine rich protein 2 4
MIRT522116 NUDT3 nudix hydrolase 3 2 4
MIRT525467 TMPRSS12 transmembrane protease, serine 12 2 2
MIRT525583 MTRNR2L7 MT-RNR2-like 7 2 2
MIRT525906 BUB1 BUB1 mitotic checkpoint serine/threonine kinase 2 2
MIRT526072 C11orf54 chromosome 11 open reading frame 54 2 2
MIRT526232 MTRNR2L5 MT-RNR2-like 5 2 4
MIRT526455 FAM71F2 family with sequence similarity 71 member F2 2 4
MIRT526515 POU5F1B POU class 5 homeobox 1B 2 2
MIRT528032 FEZ2 fasciculation and elongation protein zeta 2 2 2
MIRT528422 MRPS16 mitochondrial ribosomal protein S16 2 2
MIRT528995 ISLR2 immunoglobulin superfamily containing leucine rich repeat 2 2 4
MIRT529311 ATRNL1 attractin like 1 2 2
MIRT529376 SKP1 S-phase kinase associated protein 1 2 4
MIRT530015 SRRM1 serine and arginine repetitive matrix 1 2 2
MIRT530089 FMN2 formin 2 2 2
MIRT530942 ENPP6 ectonucleotide pyrophosphatase/phosphodiesterase 6 2 2
MIRT531229 HIST1H2BD histone cluster 1 H2B family member d 2 2
MIRT533088 YTHDF3 YTH N6-methyladenosine RNA binding protein 3 2 2
MIRT533299 USP46 ubiquitin specific peptidase 46 2 2
MIRT533318 UNKL unkempt family like zinc finger 2 2
MIRT533721 TMEM30A transmembrane protein 30A 2 2
MIRT534096 AZF1 azoospermia factor 1 2 2
MIRT534188 SLC7A11 solute carrier family 7 member 11 2 2
MIRT534493 SAR1B secretion associated Ras related GTPase 1B 2 2
MIRT536077 MBOAT2 membrane bound O-acyltransferase domain containing 2 2 2
MIRT536242 LRIG2 leucine rich repeats and immunoglobulin like domains 2 2 2
MIRT537524 FAM104A family with sequence similarity 104 member A 2 2
MIRT538088 DGKH diacylglycerol kinase eta 2 2
MIRT538475 CNBP CCHC-type zinc finger nucleic acid binding protein 2 2
MIRT538853 BTG1 BTG anti-proliferation factor 1 2 4
MIRT539075 GDNF glial cell derived neurotrophic factor 2 2
MIRT539480 ACVR2B activin A receptor type 2B 2 4
MIRT540210 ARHGAP18 Rho GTPase activating protein 18 2 2
MIRT541940 TSPAN2 tetraspanin 2 2 2
MIRT543812 COCH cochlin 2 2
MIRT545120 PDZRN4 PDZ domain containing ring finger 4 2 2
MIRT545571 GIMAP4 GTPase, IMAP family member 4 2 2
MIRT545989 XKR4 XK related 4 2 2
MIRT547213 PANK3 pantothenate kinase 3 2 4
MIRT547740 KIAA1468 KIAA1468 2 2
MIRT548022 GRB2 growth factor receptor bound protein 2 2 4
MIRT548032 GOLIM4 golgi integral membrane protein 4 2 2
MIRT548102 GFPT1 glutamine--fructose-6-phosphate transaminase 1 2 4
MIRT548217 FKBP1A FK506 binding protein 1A 2 2
MIRT548588 DDX3X DEAD-box helicase 3, X-linked 2 4
MIRT548953 CDC27 cell division cycle 27 2 2
MIRT549072 CACUL1 CDK2 associated cullin domain 1 2 2
MIRT550368 INCENP inner centromere protein 2 6
MIRT550546 MYZAP myocardial zonula adherens protein 2 2
MIRT551491 TMEM192 transmembrane protein 192 2 4
MIRT553078 UEVLD UEV and lactate/malate dehyrogenase domains 2 2
MIRT554104 SMU1 DNA replication regulator and spliceosomal factor 2 2
MIRT555127 PTPRG protein tyrosine phosphatase, receptor type G 2 2
MIRT555477 POC1B-GALNT4 POC1B-GALNT4 readthrough 2 2
MIRT555978 NPTN neuroplastin 2 2
MIRT557011 HPRT1 hypoxanthine phosphoribosyltransferase 1 2 2
MIRT557706 GALNT4 polypeptide N-acetylgalactosaminyltransferase 4 2 2
MIRT558333 DNAJC28 DnaJ heat shock protein family (Hsp40) member C28 2 4
MIRT558488 DBN1 drebrin 1 2 2
MIRT559942 ZNF567 zinc finger protein 567 2 2
MIRT561127 ATP2B1 ATPase plasma membrane Ca2+ transporting 1 2 2
MIRT561791 PAWR pro-apoptotic WT1 regulator 2 2
MIRT562438 EEF2 eukaryotic translation elongation factor 2 2 2
MIRT563102 PABPC4L poly(A) binding protein cytoplasmic 4 like 2 2
MIRT563212 ZNF813 zinc finger protein 813 2 2
MIRT563426 KIF3A kinesin family member 3A 2 2
MIRT563473 SPIN4 spindlin family member 4 2 2
MIRT564015 HSPA4 heat shock protein family A (Hsp70) member 4 2 4
MIRT564117 ZYG11B zyg-11 family member B, cell cycle regulator 2 2
MIRT564223 SDE2 SDE2 telomere maintenance homolog 2 2
MIRT564503 CACNG1 calcium voltage-gated channel auxiliary subunit gamma 1 2 2
MIRT564515 DUSP3 dual specificity phosphatase 3 2 2
MIRT564811 ZBTB21 zinc finger and BTB domain containing 21 2 2
MIRT565265 TPD52 tumor protein D52 2 2
MIRT566012 RHOB ras homolog family member B 2 2
MIRT566216 PTMA prothymosin, alpha 2 2
MIRT566638 NFYA nuclear transcription factor Y subunit alpha 2 2
MIRT566821 MAPK8 mitogen-activated protein kinase 8 2 2
MIRT566948 LEPROT leptin receptor overlapping transcript 2 2
MIRT567290 HNRNPAB heterogeneous nuclear ribonucleoprotein A/B 2 2
MIRT567895 CSTF2 cleavage stimulation factor subunit 2 2 2
MIRT568731 MTRNR2L3 MT-RNR2-like 3 2 2
MIRT571263 ZNF239 zinc finger protein 239 2 2
MIRT572593 EIF2AK4 eukaryotic translation initiation factor 2 alpha kinase 4 2 2
MIRT573827 TGOLN2 trans-golgi network protein 2 2 2
MIRT576391 Fhl2 four and a half LIM domains 2 2 2
MIRT609901 SMS spermine synthase 2 2
MIRT613710 ELMSAN1 ELM2 and Myb/SANT domain containing 1 2 2
MIRT614406 ADAT1 adenosine deaminase, tRNA specific 1 2 2
MIRT615042 DCX doublecortin 2 2
MIRT617514 C5orf45 MRN complex interacting protein 2 2
MIRT619476 PRDM10 PR/SET domain 10 2 2
MIRT620349 TLN1 talin 1 2 2
MIRT620910 PLA2G7 phospholipase A2 group VII 2 2
MIRT622131 SP4 Sp4 transcription factor 2 2
MIRT622955 OTUD7B OTU deubiquitinase 7B 2 2
MIRT623351 MAGI3 membrane associated guanylate kinase, WW and PDZ domain containing 3 2 2
MIRT623619 INTU inturned planar cell polarity protein 2 2
MIRT624409 CCDC171 coiled-coil domain containing 171 2 2
MIRT625171 CCS copper chaperone for superoxide dismutase 2 2
MIRT625685 RPP40 ribonuclease P/MRP subunit p40 2 2
MIRT625875 ALDH18A1 aldehyde dehydrogenase 18 family member A1 2 2
MIRT626002 FAM107A family with sequence similarity 107 member A 2 2
MIRT626872 HRH4 histamine receptor H4 2 4
MIRT628220 FKBP9 FK506 binding protein 9 2 2
MIRT628265 DIO2 iodothyronine deiodinase 2 2 2
MIRT628402 C8orf37 chromosome 8 open reading frame 37 2 2
MIRT630564 C3orf36 chromosome 3 open reading frame 36 2 4
MIRT631577 RASSF9 Ras association domain family member 9 2 2
MIRT635730 CCDC58 coiled-coil domain containing 58 2 2
MIRT636224 SLC8A1 solute carrier family 8 member A1 2 2
MIRT636613 CLIC5 chloride intracellular channel 5 2 2
MIRT638899 CDK9 cyclin dependent kinase 9 2 2
MIRT640167 ATXN7L1 ataxin 7 like 1 2 2
MIRT642070 GTDC1 glycosyltransferase like domain containing 1 2 2
MIRT643034 CHCHD7 coiled-coil-helix-coiled-coil-helix domain containing 7 2 2
MIRT644572 SPOP speckle type BTB/POZ protein 2 2
MIRT644954 IFNB1 interferon beta 1 2 2
MIRT645948 TTF2 transcription termination factor 2 2 2
MIRT646440 XRCC2 X-ray repair cross complementing 2 2 2
MIRT647896 EPN2 epsin 2 2 2
MIRT648276 ZNF582 zinc finger protein 582 2 2
MIRT649381 NEDD1 neural precursor cell expressed, developmentally down-regulated 1 2 2
MIRT650254 CD68 CD68 molecule 2 2
MIRT650333 ATP5S ATP synthase, H+ transporting, mitochondrial Fo complex subunit s (factor B) 2 2
MIRT651707 VMP1 vacuole membrane protein 1 2 2
MIRT651774 VASP vasodilator stimulated phosphoprotein 2 2
MIRT653144 SRPK2 SRSF protein kinase 2 2 2
MIRT654112 RPS6KA5 ribosomal protein S6 kinase A5 2 2
MIRT654161 RORB RAR related orphan receptor B 2 2
MIRT655716 MLF2 myeloid leukemia factor 2 2 2
MIRT657476 HDAC4 histone deacetylase 4 2 2
MIRT658095 FOXO1 forkhead box O1 2 2
MIRT658860 DTX3L deltex E3 ubiquitin ligase 3L 2 2
MIRT658988 DNAJA1 DnaJ heat shock protein family (Hsp40) member A1 2 2
MIRT660767 ALDH6A1 aldehyde dehydrogenase 6 family member A1 2 2
MIRT661622 C2orf15 chromosome 2 open reading frame 15 2 2
MIRT661694 TFDP2 transcription factor Dp-2 2 2
MIRT662208 PLA2G4E phospholipase A2 group IVE 2 2
MIRT662443 RALGAPA1 Ral GTPase activating protein catalytic alpha subunit 1 2 2
MIRT664422 ADH5 alcohol dehydrogenase 5 (class III), chi polypeptide 2 2
MIRT687505 NECAB1 N-terminal EF-hand calcium binding protein 1 2 2
MIRT689910 SOD2 superoxide dismutase 2 2 2
MIRT690781 PLA2G2C phospholipase A2 group IIC 2 2
MIRT698488 TIAL1 TIA1 cytotoxic granule associated RNA binding protein like 1 2 2
MIRT699685 SFMBT2 Scm like with four mbt domains 2 2 2
MIRT700926 PDS5A PDS5 cohesin associated factor A 2 2
MIRT702258 LMNB1 lamin B1 2 2
MIRT703166 GPR137C G protein-coupled receptor 137C 2 2
MIRT703242 GNS glucosamine (N-acetyl)-6-sulfatase 2 2
MIRT704737 CENPQ centromere protein Q 2 2
MIRT707310 GLRX2 glutaredoxin 2 2 2
MIRT710021 KCNQ5 potassium voltage-gated channel subfamily Q member 5 2 2
MIRT712212 SCOC short coiled-coil protein 2 2
MIRT714742 SETBP1 SET binding protein 1 2 2
MIRT718268 ZNF749 zinc finger protein 749 2 2
MIRT720553 DYRK4 dual specificity tyrosine phosphorylation regulated kinase 4 2 2
MIRT722248 RBM41 RNA binding motif protein 41 2 2
MIRT723767 MPLKIP M-phase specific PLK1 interacting protein 2 2
MIRT723977 KIAA0146 scaffolding protein involved in DNA repair 1 1
miRNA-Drug Associations
miRNA Small Melocule FDA CID Detection Method Condition PMID Year Expression Pattern of miRNA
miR-4 Dexamethasone approved 5743 Microarray primary rat thymocytes 20847043 2010 up-regulated
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-4282 Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-4282 Neoadjuvant chemotherapy sensitive tissue (breast cancer)
hsa-miR-4282 Neoadjuvant chemotherapy sensitive tissue (breast cancer)

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