pre-miRNA Information
pre-miRNA hsa-mir-2355   
Genomic Coordinates chr2: 207109987 - 207110073
Description Homo sapiens miR-2355 stem-loop
Comment None
RNA Secondary Structure
Associated Diseases

Mature miRNA Information
Mature miRNA hsa-miR-2355-5p
Sequence 11| AUCCCCAGAUACAAUGGACAA |31
Evidence Experimental
Experiments SOLiD
Editing Events in miRNAs
Modification Type Position on miR Chromosome DNA Strand Genomic Position (hg38) List of PMIDs Variant details
A-to-I 1 2 - 207110063 29233923 MiREDiBase
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1268296297 4 dbSNP
rs1361046879 5 dbSNP
rs1219551997 6 dbSNP
rs1295756820 12 dbSNP
rs1345273529 15 dbSNP
rs977145706 15 dbSNP
rs1209629984 20 dbSNP
rs759940260 21 dbSNP
Putative Targets

miRNA Expression profile
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol ALDH1A2   
Synonyms RALDH(II), RALDH2, RALDH2-T
Description aldehyde dehydrogenase 1 family member A2
Transcript NM_003888   
Other Transcripts NM_170696 , NM_170697   
Expression
Putative miRNA Targets on ALDH1A2
3'UTR of ALDH1A2
(miRNA target sites are highlighted)
>ALDH1A2|NM_003888|3'UTR
   1 GAAGGCCAAGAAGGAGGATGAAGCCCAGCCTGCACGTCTGTCCCTCTCTGCTTTCTCTGTAGGGCCCAGCTCTCAGGAAT
  81 ACAAAGTTGAGCCACGGTCCTTACTTAAAGATTGAAAAGATAACATGTAGGCCAGGCAGGTCACTGCACAACTAAAGCAA
 161 ACCAGCTGGGTACAGTTTCTTGGCACTCTGTAAGGGGCCACCTTAATCATACCAAATATTGGGGAAAGTGGGATAAAGGG
 241 AGGAGGAGGAGCTAGCAGACACATCCAGTATCTCCTTCTGGAGCACAGGATGAAATAAGGGAGCTGTATTATTTCATGTC
 321 TTTGTCACAAAGAACTTTCCTCTCAAGGAAAGGTGACCTTTCTCCTGTCTTCATTTTCCTCCTTCCAGGCCCTCCTCGCT
 401 CACCCACCCCTCCCTCTCTTCCAAGGAGATGTCAGCTGAGCTCATTCTGGGGCAGATGTTTGGGCCGGGAACAATTTTTC
 481 AAGGTTGTAAAGCCAAATTATCATTTCATGTTATCCATTTCTTCAAAGCAAAACATGAAATGGTTTTAGCTAGAGTCAGA
 561 CCAGAATGAAAATGCCAGGAGCTGGTACACTACAGATGTAGTAAGAACCTGGGATATTCCTGACCCAATCTGGTTTTCTT
 641 TTACCCATAAATAACATGAATGAAAAAAGATTGGGACAATAGAGACTGGAAGTCATCATGTGCAGTTCACCGCTTCTGAG
 721 CTTGCTGCAGTTTTGGGGTGTGTGTGTATTAGATTCCTTCTCAGTTATTCTGGAATAAGGCAAGGAGTGGGTTGTTTTTC
 801 ATAGCTAGATAAGATCTTTTCCAAAGTTTTTCTTAGAACCAACCAAAAAACAATCCGAGTAGGCCCAAGAATTTGATAAT
 881 GCTGGATGCCTTGCAGACATCATTCAGTTTCTAATATTGGGCAACAATTATTATTAAATGAATTATTTCTGTAGTTGGAA
 961 TCTGTACCTTCTGAACCTCTACACCAATAACTGCTGCAGGTGTGATTTTGGTCTGTCACACTGTACATCTATCATAATGT
1041 GCCCTGTATCTATTGGCAGTGACCTTGGAAAATCTGGCCAAGCCTAGGGGTTTCCTTTTCCATTTGCCAAGTTCCATTGT
1121 GCCAGGACTGCCGTGCTCCACTGAGCTCCTCTGTCACACCCCATTCTTGCCCCTCACTGGGCAGGCCATGGCCTACAGCT
1201 TGCAGGGAGTAAAGCAGGCCCGCCTCCCTTTCTTCCCATCCACATACTCCTCTTCTGCTTTCCAGTGACTCCACCAGTTT
1281 GATGTGGGAAGTGTTAGCTTCCTTTCCTTCTTCCATCCCTTCTTCCATCTTTCCAGCTGTCAAATCCAATCCAGTCTCTA
1361 ACCTAAATGCAGATCATTTATTTAAAAGTACCAAACATAACCCAGAGTATGTGGAATATGGGCAACATATATATAGCCTT
1441 CTGTATTTAACGATCTTCTGCTTCTTAACCGTACCAGTTTTCTATTTATAACTCTTATCTATCCATGATGTTTTAAAGTC
1521 TCCACTTGCTGTTATTTACAAACGACAGTGCATTCAGCAGCCCAGTGCCGTGAGCCCTGACAGATGCCGTATTTCTGAGT
1601 GCTTCCATGTGAATGCTGCCCTCCTGTAGCATGTGTCCAAGTGGACATAGCCACTAACCAACTAGTTACCTTTGGACTGC
1681 AACAAAAAATGTGAAAATGAAGATTTATTTCTTTTAATTTACTTAAAAAGAAACCTCTGTGCTAGCAATAAAGCATTTAT
1761 ATTGTGTACTCCTAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' aaCAGGUAACAUAGACCCCua 5'
            | :|||    |||||||  
Target 5' gaGCTCAT----TCTGGGGca 3'
438 - 454 129.00 -13.00
2
miRNA  3' aacaGGUAACAUAGACCCCUa 5'
              |||   || :|||||| 
Target 5' cataCCA-AATA-TTGGGGAa 3'
208 - 226 127.00 -12.10
3
miRNA  3' aaCAGGUAACAU--AGACCCCua 5'
            | ::: || |  |:|||||  
Target 5' gaGCTTGCTGCAGTTTTGGGGtg 3'
718 - 740 113.00 -10.70
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN30447340 13 COSMIC
COSN30103587 35 COSMIC
COSN28821749 36 COSMIC
COSN30462329 43 COSMIC
COSN31565194 48 COSMIC
COSN30136157 55 COSMIC
COSN30189323 58 COSMIC
COSN30522494 58 COSMIC
COSN31497341 62 COSMIC
COSN30461309 65 COSMIC
COSN31506451 70 COSMIC
COSN30188209 72 COSMIC
COSN30131800 75 COSMIC
COSN23691260 77 COSMIC
COSN30188332 96 COSMIC
COSN31531724 96 COSMIC
COSN30462017 100 COSMIC
COSN9090763 103 COSMIC
COSN30181047 133 COSMIC
COSN30501746 155 COSMIC
COSN31494021 182 COSMIC
COSN20731896 192 COSMIC
COSN31567137 220 COSMIC
COSN30167903 272 COSMIC
COSN16664668 320 COSMIC
COSN20092980 378 COSMIC
COSN6276762 395 COSMIC
COSN28699036 479 COSMIC
COSN26808721 612 COSMIC
COSN31570964 669 COSMIC
COSN20092979 702 COSMIC
COSN28777785 716 COSMIC
COSN8747957 1079 COSMIC
COSN27216908 1146 COSMIC
COSN6276761 1154 COSMIC
COSN31959654 1416 COSMIC
COSN26603579 1696 COSMIC
COSN31529117 1711 COSMIC
COSN31570473 1767 COSMIC
rs3204689 593 GWAS
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1490003815 1 dbSNP
rs761329415 6 dbSNP
rs753548917 10 dbSNP
rs764306515 11 dbSNP
rs761031936 12 dbSNP
rs756707062 14 dbSNP
rs772617311 16 dbSNP
rs1247660308 18 dbSNP
rs1328292799 23 dbSNP
rs202016768 24 dbSNP
rs1178364472 25 dbSNP
rs774257162 29 dbSNP
rs201404328 35 dbSNP
rs374606685 36 dbSNP
rs768336453 39 dbSNP
rs1351678690 47 dbSNP
rs746855023 49 dbSNP
rs780113751 51 dbSNP
rs368810250 58 dbSNP
rs1432207877 62 dbSNP
rs1302791214 66 dbSNP
rs764262113 67 dbSNP
rs1232531358 68 dbSNP
rs555596580 74 dbSNP
rs1360284285 77 dbSNP
rs1330878685 79 dbSNP
rs921355361 80 dbSNP
rs1267700444 86 dbSNP
rs538080957 88 dbSNP
rs189936050 91 dbSNP
rs1192970329 95 dbSNP
rs549890208 95 dbSNP
rs768200276 96 dbSNP
rs1197441204 97 dbSNP
rs1414854555 97 dbSNP
rs1458032823 99 dbSNP
rs1158930679 107 dbSNP
rs779978919 108 dbSNP
rs983373135 114 dbSNP
rs1294774103 124 dbSNP
rs950714210 126 dbSNP
rs1385749280 138 dbSNP
rs1281231702 145 dbSNP
rs1352291438 148 dbSNP
rs920400327 156 dbSNP
rs1228730318 165 dbSNP
rs770130797 167 dbSNP
rs759934180 168 dbSNP
rs1287544796 171 dbSNP
rs1260490650 173 dbSNP
rs1202878030 175 dbSNP
rs969757536 178 dbSNP
rs1266093670 179 dbSNP
rs1488164247 180 dbSNP
rs1022719855 181 dbSNP
rs1254540025 183 dbSNP
rs1473215216 196 dbSNP
rs1014456091 197 dbSNP
rs1209995919 198 dbSNP
rs1345537404 199 dbSNP
rs1416929795 202 dbSNP
rs959721455 209 dbSNP
rs1456934052 216 dbSNP
rs1031777185 219 dbSNP
rs1229480081 219 dbSNP
rs1410400769 222 dbSNP
rs1307173366 224 dbSNP
rs1370981609 227 dbSNP
rs1326099367 241 dbSNP
rs1313625547 244 dbSNP
rs999094176 249 dbSNP
rs535866784 251 dbSNP
rs1243803757 252 dbSNP
rs1043172178 258 dbSNP
rs1483648091 264 dbSNP
rs996972540 267 dbSNP
rs1484405652 268 dbSNP
rs1182840224 270 dbSNP
rs1414009480 272 dbSNP
rs1422929796 273 dbSNP
rs1161100275 274 dbSNP
rs1391555163 275 dbSNP
rs1430315544 277 dbSNP
rs1167819372 280 dbSNP
rs900049145 280 dbSNP
rs1397867921 281 dbSNP
rs1449901339 285 dbSNP
rs1303230262 286 dbSNP
rs1041125566 290 dbSNP
rs944147820 295 dbSNP
rs35145994 296 dbSNP
rs1342889785 298 dbSNP
rs1433399734 299 dbSNP
rs776980731 301 dbSNP
rs1227774158 316 dbSNP
rs1047522602 319 dbSNP
rs371440513 324 dbSNP
rs78853556 332 dbSNP
rs547423132 335 dbSNP
rs879203500 336 dbSNP
rs771490809 340 dbSNP
rs753920947 345 dbSNP
rs1482722786 352 dbSNP
rs948529535 357 dbSNP
rs1249517112 362 dbSNP
rs778030846 364 dbSNP
rs144417368 365 dbSNP
rs1167450507 381 dbSNP
rs1417236691 386 dbSNP
rs1176478550 387 dbSNP
rs1416148043 387 dbSNP
rs1358426876 394 dbSNP
rs35837877 397 dbSNP
rs1425048923 398 dbSNP
rs1434407133 403 dbSNP
rs960078188 405 dbSNP
rs1268541367 407 dbSNP
rs1257582860 411 dbSNP
rs1370321782 411 dbSNP
rs35176553 414 dbSNP
rs1484638936 418 dbSNP
rs977498734 427 dbSNP
rs576140820 428 dbSNP
rs34296345 430 dbSNP
rs1338436822 433 dbSNP
rs779295930 434 dbSNP
rs542709202 441 dbSNP
rs997087771 449 dbSNP
rs1239898294 454 dbSNP
rs1247244500 455 dbSNP
rs1478964171 459 dbSNP
rs1191647050 462 dbSNP
rs573799961 463 dbSNP
rs553712290 466 dbSNP
rs1322476241 468 dbSNP
rs369448208 469 dbSNP
rs1413523842 472 dbSNP
rs1161135397 474 dbSNP
rs1389628387 475 dbSNP
rs757508366 476 dbSNP
rs1352887824 478 dbSNP
rs4646642 479 dbSNP
rs1316309516 483 dbSNP
rs1437296901 485 dbSNP
rs1391181629 486 dbSNP
rs745449337 492 dbSNP
rs376854981 493 dbSNP
rs1230567848 497 dbSNP
rs1289421799 499 dbSNP
rs1329380672 503 dbSNP
rs1204247363 505 dbSNP
rs1281504761 510 dbSNP
rs778778868 512 dbSNP
rs1417997557 513 dbSNP
rs931302112 535 dbSNP
rs568256811 539 dbSNP
rs1268041091 540 dbSNP
rs553505759 542 dbSNP
rs1489854366 543 dbSNP
rs578178185 544 dbSNP
rs1412523733 547 dbSNP
rs1472380673 549 dbSNP
rs1156987844 554 dbSNP
rs1163613226 562 dbSNP
rs898534177 564 dbSNP
rs1253898505 567 dbSNP
rs1182371291 568 dbSNP
rs1437075604 569 dbSNP
rs1364229247 574 dbSNP
rs1412264379 576 dbSNP
rs1248144916 577 dbSNP
rs1037610164 580 dbSNP
rs1309011430 583 dbSNP
rs1211900433 585 dbSNP
rs1237345089 590 dbSNP
rs1277371024 592 dbSNP
rs3204689 593 dbSNP
rs915723127 594 dbSNP
rs756122757 595 dbSNP
rs1489838253 603 dbSNP
rs1207282752 608 dbSNP
rs993083226 609 dbSNP
rs1436943289 613 dbSNP
rs1179433898 624 dbSNP
rs3204690 627 dbSNP
rs1473276806 633 dbSNP
rs35409575 643 dbSNP
rs1383535812 647 dbSNP
rs1432152229 650 dbSNP
rs1280660900 651 dbSNP
rs1370520226 653 dbSNP
rs1238939486 656 dbSNP
rs1334421403 664 dbSNP
rs977237053 665 dbSNP
rs1325903160 671 dbSNP
rs1341864809 672 dbSNP
rs1448388128 673 dbSNP
rs968346756 677 dbSNP
rs1313718975 680 dbSNP
rs1356571535 686 dbSNP
rs1447803328 692 dbSNP
rs1021272963 694 dbSNP
rs1387660452 698 dbSNP
rs4646643 699 dbSNP
rs536309462 700 dbSNP
rs751527932 702 dbSNP
rs35516627 711 dbSNP
rs763079805 712 dbSNP
rs1159143916 714 dbSNP
rs1241544110 714 dbSNP
rs1451369503 719 dbSNP
rs1008816931 721 dbSNP
rs547386465 728 dbSNP
rs887324477 730 dbSNP
rs1372989839 731 dbSNP
rs1361899270 735 dbSNP
rs1460958021 735 dbSNP
rs1200760442 736 dbSNP
rs1468718499 737 dbSNP
rs1335593031 740 dbSNP
rs149451264 742 dbSNP
rs1211994747 744 dbSNP
rs564929250 746 dbSNP
rs1225232172 748 dbSNP
rs1325753067 748 dbSNP
rs995620990 752 dbSNP
rs752884882 756 dbSNP
rs1202798957 764 dbSNP
rs1205097620 768 dbSNP
rs1466461053 773 dbSNP
rs1045109685 775 dbSNP
rs1277081737 788 dbSNP
rs1427245133 789 dbSNP
rs1063666 793 dbSNP
rs1378725427 797 dbSNP
rs1370646561 801 dbSNP
rs181360644 805 dbSNP
rs57284604 807 dbSNP
rs759769432 808 dbSNP
rs938510519 811 dbSNP
rs375753449 814 dbSNP
rs924502471 815 dbSNP
rs1390256304 818 dbSNP
rs1041435453 821 dbSNP
rs1288937294 823 dbSNP
rs1383683794 823 dbSNP
rs1380037503 825 dbSNP
rs1318383078 829 dbSNP
rs1303229494 832 dbSNP
rs1331635489 834 dbSNP
rs1399565510 836 dbSNP
rs1222654078 843 dbSNP
rs1382736737 843 dbSNP
rs1331483368 851 dbSNP
rs1229305789 853 dbSNP
rs1260377776 856 dbSNP
rs1484896994 857 dbSNP
rs1211746879 859 dbSNP
rs1268606863 867 dbSNP
rs1174181857 874 dbSNP
rs947159505 880 dbSNP
rs914213084 881 dbSNP
rs1394237387 882 dbSNP
rs1192057031 883 dbSNP
rs1473358474 884 dbSNP
rs1451522318 885 dbSNP
rs190474808 888 dbSNP
rs1215181748 889 dbSNP
rs1445290802 905 dbSNP
rs573765547 907 dbSNP
rs1404334226 916 dbSNP
rs80028556 921 dbSNP
rs912805177 925 dbSNP
rs987106394 937 dbSNP
rs1306513221 938 dbSNP
rs951619671 945 dbSNP
rs1278593694 946 dbSNP
rs1025836537 954 dbSNP
rs1266150512 957 dbSNP
rs1225528855 958 dbSNP
rs186923292 962 dbSNP
rs1220977119 967 dbSNP
rs1270369747 972 dbSNP
rs1177017137 977 dbSNP
rs368804011 978 dbSNP
rs1429417557 984 dbSNP
rs962801635 987 dbSNP
rs1324112118 993 dbSNP
rs771273577 1000 dbSNP
rs1314727833 1010 dbSNP
rs1416984354 1011 dbSNP
rs866997627 1015 dbSNP
rs1012256489 1020 dbSNP
rs1166290693 1022 dbSNP
rs761255309 1025 dbSNP
rs1361033902 1031 dbSNP
rs1423467595 1034 dbSNP
rs1161526170 1035 dbSNP
rs137874499 1036 dbSNP
rs773645883 1038 dbSNP
rs548007984 1042 dbSNP
rs1171495050 1052 dbSNP
rs1315272289 1052 dbSNP
rs1442604732 1055 dbSNP
rs1057418258 1057 dbSNP
rs1420502021 1059 dbSNP
rs1398075450 1060 dbSNP
rs1382046345 1069 dbSNP
rs1186094456 1077 dbSNP
rs1474502967 1084 dbSNP
rs182305307 1085 dbSNP
rs1343524398 1087 dbSNP
rs778690847 1088 dbSNP
rs34035247 1090 dbSNP
rs1183181714 1091 dbSNP
rs1255968427 1101 dbSNP
rs1243385835 1104 dbSNP
rs1443441131 1107 dbSNP
rs1181244886 1108 dbSNP
rs1207782518 1119 dbSNP
rs575901986 1121 dbSNP
rs1410502126 1122 dbSNP
rs768447968 1123 dbSNP
rs1213612600 1128 dbSNP
rs370078773 1132 dbSNP
rs1294560463 1133 dbSNP
rs1382348629 1137 dbSNP
rs1450475487 1141 dbSNP
rs1299974714 1142 dbSNP
rs942354197 1143 dbSNP
rs1214559833 1145 dbSNP
rs1294078722 1148 dbSNP
rs1415373970 1149 dbSNP
rs912260806 1150 dbSNP
rs4646644 1152 dbSNP
rs1263328090 1153 dbSNP
rs35437120 1162 dbSNP
rs918729539 1163 dbSNP
rs552276302 1171 dbSNP
rs974247782 1172 dbSNP
rs1354885632 1173 dbSNP
rs1170095159 1174 dbSNP
rs755948610 1175 dbSNP
rs1023722098 1186 dbSNP
rs36075327 1188 dbSNP
rs372460491 1189 dbSNP
rs1462734250 1199 dbSNP
rs1474899959 1206 dbSNP
rs1035050601 1207 dbSNP
rs1256026972 1219 dbSNP
rs1184890271 1221 dbSNP
rs1481195701 1222 dbSNP
rs1232655456 1238 dbSNP
rs1308021794 1240 dbSNP
rs1345803336 1243 dbSNP
rs1003177687 1244 dbSNP
rs1430110874 1245 dbSNP
rs1287594136 1249 dbSNP
rs1203427218 1250 dbSNP
rs903111240 1253 dbSNP
rs1283092099 1257 dbSNP
rs1322392628 1264 dbSNP
rs1285925759 1269 dbSNP
rs571153025 1271 dbSNP
rs1240233538 1273 dbSNP
rs1041496764 1280 dbSNP
rs1427871596 1283 dbSNP
rs1199840555 1296 dbSNP
rs781174242 1304 dbSNP
rs1428412359 1308 dbSNP
rs1479341843 1310 dbSNP
rs1161559798 1314 dbSNP
rs551360288 1315 dbSNP
rs1233397974 1318 dbSNP
rs1011365769 1322 dbSNP
rs1333452079 1327 dbSNP
rs1400145576 1327 dbSNP
rs893007471 1328 dbSNP
rs1302907820 1330 dbSNP
rs1406163281 1330 dbSNP
rs1343958853 1332 dbSNP
rs1039417727 1337 dbSNP
rs1412065386 1339 dbSNP
rs1280887500 1342 dbSNP
rs1350971679 1348 dbSNP
rs1222683317 1351 dbSNP
rs1281571475 1352 dbSNP
rs942490431 1352 dbSNP
rs1361489666 1358 dbSNP
rs1061278 1366 dbSNP
rs34599571 1367 dbSNP
rs1373837281 1370 dbSNP
rs1297376558 1390 dbSNP
rs143017886 1397 dbSNP
rs1156893427 1398 dbSNP
rs1416121538 1398 dbSNP
rs1469856462 1398 dbSNP
rs1397003214 1400 dbSNP
rs761225177 1407 dbSNP
rs9325 1409 dbSNP
rs1364281523 1413 dbSNP
rs1415748880 1416 dbSNP
rs1335948862 1421 dbSNP
rs1161993756 1422 dbSNP
rs1277426013 1430 dbSNP
rs1384280977 1432 dbSNP
rs1420168022 1433 dbSNP
rs1407778326 1451 dbSNP
rs974360736 1452 dbSNP
rs1197303764 1458 dbSNP
rs1273534960 1463 dbSNP
rs1479186444 1467 dbSNP
rs941500856 1470 dbSNP
rs112628706 1471 dbSNP
rs1445268825 1474 dbSNP
rs755231413 1488 dbSNP
rs960838086 1492 dbSNP
rs1035401421 1493 dbSNP
rs1270696299 1494 dbSNP
rs978123993 1494 dbSNP
rs1217931222 1495 dbSNP
rs1317474448 1498 dbSNP
rs967226666 1499 dbSNP
rs1306154257 1505 dbSNP
rs746260259 1519 dbSNP
rs1221866873 1521 dbSNP
rs1407873228 1531 dbSNP
rs138481970 1534 dbSNP
rs184311853 1540 dbSNP
rs533467974 1543 dbSNP
rs145792909 1544 dbSNP
rs1270707849 1546 dbSNP
rs892955432 1551 dbSNP
rs1338429546 1561 dbSNP
rs766749580 1562 dbSNP
rs1265173148 1563 dbSNP
rs1440434208 1566 dbSNP
rs1392419858 1569 dbSNP
rs35611600 1570 dbSNP
rs1241431082 1573 dbSNP
rs1454330732 1580 dbSNP
rs890887282 1581 dbSNP
rs1430796000 1582 dbSNP
rs1194436317 1584 dbSNP
rs773827478 1587 dbSNP
rs575979289 1588 dbSNP
rs556073609 1589 dbSNP
rs768192377 1592 dbSNP
rs1470059047 1597 dbSNP
rs1157471201 1599 dbSNP
rs180910697 1603 dbSNP
rs1399360508 1619 dbSNP
rs1383415495 1626 dbSNP
rs573466400 1629 dbSNP
rs1396065772 1635 dbSNP
rs1325804579 1639 dbSNP
rs1038618956 1647 dbSNP
rs1193920544 1651 dbSNP
rs1324529076 1661 dbSNP
rs2304864 1664 dbSNP
rs1223190144 1668 dbSNP
rs1261503695 1670 dbSNP
rs35897884 1674 dbSNP
rs1264772453 1678 dbSNP
rs1187799686 1690 dbSNP
rs916725853 1691 dbSNP
rs184138969 1693 dbSNP
rs761360535 1700 dbSNP
rs1260090808 1705 dbSNP
rs571330470 1707 dbSNP
rs1175179081 1710 dbSNP
rs1183718926 1711 dbSNP
rs1454844275 1711 dbSNP
rs1158688794 1716 dbSNP
rs1384122100 1717 dbSNP
rs1398145230 1723 dbSNP
rs1304715622 1725 dbSNP
rs774033104 1735 dbSNP
rs1213539601 1736 dbSNP
rs557435687 1739 dbSNP
rs1281561997 1741 dbSNP
rs1280737757 1749 dbSNP
rs1233901287 1753 dbSNP
rs1022278246 1755 dbSNP
rs1349147921 1757 dbSNP
rs1225297391 1758 dbSNP
rs1369078379 1763 dbSNP
rs78803774 1765 dbSNP
rs1490276590 1769 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HEK293S
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in GSM1084065. RNA binding protein: AGO2. Condition:CLIP_emetine_AbnovaAb HITS-CLIP data was present in GSM1084073. RNA binding protein: AGO2. Condition:CLIP_hippuristanol_rep1_AbnovaAb ...

- Karginov FV; Hannon GJ, 2013, Genes & development.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' aacagguaacAUAGACCCCUa 5'
                    || :|||||| 
Target 5' ----------UA-UUGGGGAa 3'
1 - 10
Article - Karginov FV; Hannon GJ
- Genes & development, 2013
When adapting to environmental stress, cells attenuate and reprogram their translational output. In part, these altered translation profiles are established through changes in the interactions between RNA-binding proteins and mRNAs. The Argonaute 2 (Ago2)/microRNA (miRNA) machinery has been shown to participate in stress-induced translational up-regulation of a particular mRNA, CAT-1; however, a detailed, transcriptome-wide understanding of the involvement of Ago2 in the process has been lacking. Here, we profiled the overall changes in Ago2-mRNA interactions upon arsenite stress by cross-linking immunoprecipitation (CLIP) followed by high-throughput sequencing (CLIP-seq). Ago2 displayed a significant remodeling of its transcript occupancy, with the majority of 3' untranslated region (UTR) and coding sequence (CDS) sites exhibiting stronger interaction. Interestingly, target sites that were destined for release from Ago2 upon stress were depleted in miRNA complementarity signatures, suggesting an alternative mode of interaction. To compare the changes in Ago2-binding patterns across transcripts with changes in their translational states, we measured mRNA profiles on ribosome/polysome gradients by RNA sequencing (RNA-seq). Increased Ago2 occupancy correlated with stronger repression of translation for those mRNAs, as evidenced by a shift toward lighter gradient fractions upon stress, while release of Ago2 was associated with the limited number of transcripts that remained translated. Taken together, these data point to a role for Ago2 and the mammalian miRNAs in mediating the translational component of the stress response.
LinkOut: [PMID: 23824327]
CLIP-seq Support 1 for dataset GSM1084065
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_emetine_AbnovaAb
Location of target site ENST00000249750.4 | 3UTR | AAAUAUUGGGGAAAGU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM1084073
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_hippuristanol_rep1_AbnovaAb
Location of target site ENST00000249750.4 | 3UTR | UAUUGGGGAAAGUGGGAUAAAGGGAGGAGGAGGAGCU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
THCA 0.293 0.01 0.207 0.06 59 Click to see details
LUAD -0.593 0.02 -0.699 0.01 12 Click to see details
CESC 0.992 0.04 1.000 0.5 3 Click to see details
BRCA 0.176 0.05 0.152 0.08 84 Click to see details
ESCA 0.408 0.11 0.418 0.1 11 Click to see details
PRAD -0.17 0.12 -0.083 0.28 50 Click to see details
CHOL -0.308 0.21 -0.233 0.27 9 Click to see details
KIRC 0.099 0.21 0.039 0.38 68 Click to see details
LIHC -0.104 0.24 -0.152 0.15 49 Click to see details
KIRP 0.109 0.28 0.032 0.43 32 Click to see details
STAD -0.085 0.32 -0.227 0.11 32 Click to see details
UCEC -0.094 0.35 -0.033 0.45 19 Click to see details
HNSC 0.059 0.36 0.045 0.39 42 Click to see details
PAAD -0.275 0.36 0.000 0.5 4 Click to see details
KICH 0.031 0.44 0.057 0.39 25 Click to see details
PCPG -0.131 0.46 -0.500 0.33 3 Click to see details
LUSC -0.015 0.46 -0.063 0.35 38 Click to see details
BLCA 0.002 0.5 -0.079 0.38 18 Click to see details
BLCA 0.002 0.5 -0.079 0.38 18 Click to see details
164 hsa-miR-2355-5p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT190653 PABPN1 poly(A) binding protein nuclear 1 2 2
MIRT286477 TAOK1 TAO kinase 1 2 4
MIRT318993 GIGYF1 GRB10 interacting GYF protein 1 2 2
MIRT345622 DCAF7 DDB1 and CUL4 associated factor 7 2 4
MIRT442513 SYT7 synaptotagmin 7 2 4
MIRT444247 CTNND1 catenin delta 1 2 2
MIRT444780 ECE1 endothelin converting enzyme 1 2 2
MIRT456525 TMEM63A transmembrane protein 63A 2 2
MIRT468960 RPRD2 regulation of nuclear pre-mRNA domain containing 2 2 2
MIRT469834 R3HDM4 R3H domain containing 4 2 2
MIRT470027 PTP4A1 protein tyrosine phosphatase type IVA, member 1 2 2
MIRT471167 PHB2 prohibitin 2 2 2
MIRT475819 HDGF heparin binding growth factor 2 4
MIRT479389 CDKN1B cyclin dependent kinase inhibitor 1B 2 6
MIRT481747 APH1A aph-1 homolog A, gamma-secretase subunit 2 2
MIRT485220 PRICKLE1 prickle planar cell polarity protein 1 2 2
MIRT487259 CCNF cyclin F 2 2
MIRT489971 MCC mutated in colorectal cancers 2 4
MIRT491399 C1D C1D nuclear receptor corepressor 2 2
MIRT494959 CCDC144A coiled-coil domain containing 144A 2 4
MIRT494979 PPP5D1 PPP5 tetratricopeptide repeat domain containing 1 2 2
MIRT495225 CHST14 carbohydrate sulfotransferase 14 2 2
MIRT496550 TBX15 T-box 15 2 2
MIRT501612 PISD phosphatidylserine decarboxylase 2 2
MIRT509393 TRIM24 tripartite motif containing 24 2 2
MIRT519616 ZNF788 zinc finger family member 788 2 4
MIRT519738 ZNF394 zinc finger protein 394 2 4
MIRT521230 SAR1A secretion associated Ras related GTPase 1A 2 4
MIRT521801 POM121C POM121 transmembrane nucleoporin C 2 2
MIRT526233 C2orf15 chromosome 2 open reading frame 15 2 2
MIRT526932 CMSS1 cms1 ribosomal small subunit homolog (yeast) 2 2
MIRT529189 ACBD7 acyl-CoA binding domain containing 7 2 2
MIRT529329 ZNF649 zinc finger protein 649 2 2
MIRT529698 MRPL30 mitochondrial ribosomal protein L30 2 2
MIRT529921 TOP1MT DNA topoisomerase I mitochondrial 2 2
MIRT530032 SMC1A structural maintenance of chromosomes 1A 2 2
MIRT530898 C9orf3 chromosome 9 open reading frame 3 2 2
MIRT531621 TM4SF5 transmembrane 4 L six family member 5 2 4
MIRT533132 XIAP X-linked inhibitor of apoptosis 2 2
MIRT533210 WAPAL WAPL cohesin release factor 2 2
MIRT534058 ST6GALNAC3 ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 3 2 2
MIRT535487 PARVB parvin beta 2 2
MIRT536749 HOXD9 homeobox D9 2 2
MIRT551456 CARKD NAD(P)HX dehydratase 2 2
MIRT551858 ASB6 ankyrin repeat and SOCS box containing 6 2 2
MIRT552095 FAM8A1 family with sequence similarity 8 member A1 2 2
MIRT552332 ZNF704 zinc finger protein 704 2 2
MIRT552549 ZFP36L2 ZFP36 ring finger protein like 2 2 2
MIRT561505 SRSF2 serine and arginine rich splicing factor 2 2 2
MIRT562702 ZNF415 zinc finger protein 415 2 2
MIRT563052 ZNF138 zinc finger protein 138 2 2
MIRT564592 ZNF791 zinc finger protein 791 2 2
MIRT566422 PIGA phosphatidylinositol glycan anchor biosynthesis class A 2 2
MIRT570176 RCBTB1 RCC1 and BTB domain containing protein 1 2 2
MIRT570866 ZNF525 zinc finger protein 525 2 2
MIRT570875 ZFP1 ZFP1 zinc finger protein 2 2
MIRT571517 ZNF625 zinc finger protein 625 2 2
MIRT572551 DKK3 dickkopf WNT signaling pathway inhibitor 3 2 2
MIRT610894 HINFP histone H4 transcription factor 2 2
MIRT611037 PTGES prostaglandin E synthase 2 2
MIRT611479 HSPA4 heat shock protein family A (Hsp70) member 4 2 4
MIRT612419 SP1 Sp1 transcription factor 2 2
MIRT614478 FRMPD3 FERM and PDZ domain containing 3 2 2
MIRT616318 CACNA1A calcium voltage-gated channel subunit alpha1 A 2 2
MIRT616929 ZNF638 zinc finger protein 638 2 2
MIRT618131 GABARAPL3 GABA type A receptor associated protein like 3 pseudogene 2 2
MIRT618452 ZFP30 ZFP30 zinc finger protein 2 4
MIRT620671 BBS5 Bardet-Biedl syndrome 5 2 2
MIRT620713 ASB16 ankyrin repeat and SOCS box containing 16 2 2
MIRT621126 EMC7 ER membrane protein complex subunit 7 2 4
MIRT621443 TOMM22 translocase of outer mitochondrial membrane 22 2 2
MIRT623491 KCTD11 potassium channel tetramerization domain containing 11 2 2
MIRT623783 GOSR1 golgi SNAP receptor complex member 1 2 2
MIRT623918 FNBP1L formin binding protein 1 like 2 2
MIRT625723 CXorf38 chromosome X open reading frame 38 2 2
MIRT625778 GCNT1 glucosaminyl (N-acetyl) transferase 1, core 2 2 2
MIRT626940 TTR transthyretin 2 2
MIRT627357 TSC22D2 TSC22 domain family member 2 2 2
MIRT632078 ALDH1A2 aldehyde dehydrogenase 1 family member A2 2 2
MIRT633361 FAM71F2 family with sequence similarity 71 member F2 2 2
MIRT639793 MVK mevalonate kinase 2 2
MIRT643761 NAGK N-acetylglucosamine kinase 2 2
MIRT644358 NDUFAF6 NADH:ubiquinone oxidoreductase complex assembly factor 6 2 2
MIRT645558 ZMYM1 zinc finger MYM-type containing 1 2 2
MIRT646588 ANKRD36 ankyrin repeat domain 36 2 2
MIRT646631 SLC25A46 solute carrier family 25 member 46 2 2
MIRT648066 HSPA6 heat shock protein family A (Hsp70) member 6 2 2
MIRT648142 SUCLG2 succinate-CoA ligase GDP-forming beta subunit 2 2
MIRT648416 MYOZ3 myozenin 3 2 2
MIRT649218 AMMECR1L AMMECR1 like 2 2
MIRT649772 MRPS27 mitochondrial ribosomal protein S27 2 4
MIRT650510 UFM1 ubiquitin fold modifier 1 2 2
MIRT651007 ZNF740 zinc finger protein 740 2 2
MIRT651524 WNT2B Wnt family member 2B 2 2
MIRT652014 TTYH3 tweety family member 3 2 2
MIRT652513 TMEM109 transmembrane protein 109 2 2
MIRT652686 THUMPD3 THUMP domain containing 3 2 2
MIRT652772 TENM3 teneurin transmembrane protein 3 2 2
MIRT653160 SPRY4 sprouty RTK signaling antagonist 4 2 2
MIRT653765 SIX5 SIX homeobox 5 2 2
MIRT653792 SIRPA signal regulatory protein alpha 2 2
MIRT655649 OAZ2 ornithine decarboxylase antizyme 2 2 2
MIRT656263 MEX3A mex-3 RNA binding family member A 2 2
MIRT657044 KCNH6 potassium voltage-gated channel subfamily H member 6 2 2
MIRT657375 HMGA1 high mobility group AT-hook 1 2 2
MIRT657532 GTDC1 glycosyltransferase like domain containing 1 2 2
MIRT657542 GSTO2 glutathione S-transferase omega 2 2 2
MIRT657828 GJD3 gap junction protein delta 3 2 2
MIRT658946 DOK6 docking protein 6 2 2
MIRT660363 BACH2 BTB domain and CNC homolog 2 2 2
MIRT660406 ATXN7L3 ataxin 7 like 3 2 2
MIRT660948 ABL2 ABL proto-oncogene 2, non-receptor tyrosine kinase 2 2
MIRT661031 AAK1 AP2 associated kinase 1 2 2
MIRT662435 RALGAPA1 Ral GTPase activating protein catalytic alpha subunit 1 2 2
MIRT668419 FAM217B family with sequence similarity 217 member B 2 2
MIRT669332 BSND barttin CLCNK type accessory beta subunit 2 2
MIRT676105 CLUAP1 clusterin associated protein 1 2 2
MIRT677084 SMIM15 small integral membrane protein 15 2 2
MIRT677127 OGFOD3 2-oxoglutarate and iron dependent oxygenase domain containing 3 2 2
MIRT678001 CPM carboxypeptidase M 2 2
MIRT678531 TMEM78 transmembrane protein 78 2 2
MIRT680000 ZNF860 zinc finger protein 860 2 2
MIRT680098 PXMP4 peroxisomal membrane protein 4 2 2
MIRT686795 SOX12 SRY-box 12 2 2
MIRT698887 SPTBN2 spectrin beta, non-erythrocytic 2 2 2
MIRT699371 SLC30A6 solute carrier family 30 member 6 2 2
MIRT702005 MIDN midnolin 2 2
MIRT708101 IGF2BP1 insulin like growth factor 2 mRNA binding protein 1 2 2
MIRT709563 GYG2 glycogenin 2 2 2
MIRT710559 PPP2R5E protein phosphatase 2 regulatory subunit B'epsilon 2 2
MIRT710585 CDCA4 cell division cycle associated 4 2 2
MIRT710873 NT5DC1 5'-nucleotidase domain containing 1 2 2
MIRT711876 VASP vasodilator stimulated phosphoprotein 2 2
MIRT712226 RIMS3 regulating synaptic membrane exocytosis 3 2 2
MIRT713211 FAM13A family with sequence similarity 13 member A 2 2
MIRT713261 GPR55 G protein-coupled receptor 55 2 2
MIRT713327 DNAJC28 DnaJ heat shock protein family (Hsp40) member C28 2 2
MIRT713889 RNF19B ring finger protein 19B 2 2
MIRT714015 UBAP2L ubiquitin associated protein 2 like 2 2
MIRT714202 NLRP12 NLR family pyrin domain containing 12 2 2
MIRT714717 VPS8 VPS8, CORVET complex subunit 2 2
MIRT714748 ZNF385D zinc finger protein 385D 2 2
MIRT714806 ARHGEF19 Rho guanine nucleotide exchange factor 19 2 2
MIRT714852 ADAMTS17 ADAM metallopeptidase with thrombospondin type 1 motif 17 2 2
MIRT715717 MRPL4 mitochondrial ribosomal protein L4 2 2
MIRT715852 GRIN2A glutamate ionotropic receptor NMDA type subunit 2A 2 2
MIRT716853 MFSD12 major facilitator superfamily domain containing 12 2 2
MIRT717134 EBPL emopamil binding protein like 2 2
MIRT717248 TMEM246 transmembrane protein 246 2 2
MIRT717997 ZNF79 zinc finger protein 79 2 2
MIRT718341 PURA purine rich element binding protein A 2 2
MIRT719587 TFCP2L1 transcription factor CP2 like 1 2 2
MIRT720520 PTGR2 prostaglandin reductase 2 2 2
MIRT720671 SLC39A13 solute carrier family 39 member 13 2 2
MIRT721213 DCLK3 doublecortin like kinase 3 2 2
MIRT721757 INF2 inverted formin, FH2 and WH2 domain containing 2 2
MIRT721826 POU6F1 POU class 6 homeobox 1 2 2
MIRT722091 SUSD1 sushi domain containing 1 2 2
MIRT722275 LURAP1 leucine rich adaptor protein 1 2 2
MIRT722802 ARHGAP19 Rho GTPase activating protein 19 2 2
MIRT722866 FAM212B family with sequence similarity 212 member B 2 2
MIRT723113 ZSCAN16 zinc finger and SCAN domain containing 16 2 2
MIRT724378 NEK8 NIMA related kinase 8 2 2
MIRT732775 PYCR1 pyrroline-5-carboxylate reductase 1 3 0
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-2355 Ceritinib 57379345 NSC776422 approved resistant cell line (H3122)
hsa-miR-2355-5p Gemcitabine 60750 NSC613327 approved sensitive High Pancreatic Cancer cell line (PANC-1)
hsa-miR-2355-5p Fluorouracil 3385 NSC19893 approved sensitive High Pancreatic Cancer cell line (PANC-1)
hsa-miR-2355-5p Imatinib 5291 NSC743414 approved resistant High Chronic Myelogenous Leukemia cell line (K562)
hsa-miR-2355-5p Cisplatin 5460033 NSC119875 approved resistant High Non-Small Cell Lung Cancer cell line (A549, HCC827)
hsa-miR-2355-5p Gefitinib 123631 NSC715055 approved resistant High Non-Small Cell Lung Cancer cell line (A549, HCC827)
hsa-miR-2355-5p Temozolomide 5394 NSC362856 approved resistant High Glioma tissue
hsa-miR-2355-5p Osimertinib 71496458 NSC779217 approved sensitive cell line (HCC827)
hsa-miR-2355-5p Vemurafenib 42611257 NSC761431 approved resistant cell line (451Lu)
hsa-miR-2355-5p Cisplatin 5460033 NSC119875 approved resistant cell line (A549)
hsa-miR-2355-5p Gefitinib 123631 NSC715055 approved resistant cell line (HCC827)
hsa-miR-2355-5p Tamoxifen+Fulvestrant sensitive cell line (LCC9)
hsa-miR-2355-5p Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-2355-5p Ceritinib 57379345 NSC776422 approved resistant cell line (H3122)
hsa-miR-2355-5p Cisplatin 5460033 NSC119875 approved sensitive cell line (TOV-112D)
hsa-miR-2355-5p Cisplatin 5460033 NSC119875 approved sensitive cell line (OVSAHO)

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