pre-miRNA Information
pre-miRNA hsa-mir-1273h   
Genomic Coordinates chr16: 24203116 - 24203231
Description Homo sapiens miR-1273h stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-1273h-5p
Sequence 33| CUGGGAGGUCAAGGCUGCAGU |53
Evidence Experimental
Experiments Illumina
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1028034199 14 dbSNP
rs542383563 18 dbSNP
Putative Targets

miRNA Expression profile
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol CCL22   
Synonyms A-152E5.1, ABCD-1, DC/B-CK, MDC, SCYA22, STCP-1
Description C-C motif chemokine ligand 22
Transcript NM_002990   
Expression
Putative miRNA Targets on CCL22
3'UTR of CCL22
(miRNA target sites are highlighted)
>CCL22|NM_002990|3'UTR
   1 AGAGCCTACTCTGATGACCGTGGCCTTGGCTCCTCCAGGAAGGCTCAGGAGCCCTACCTCCCTGCCATTATAGCTGCTCC
  81 CCGCCAGAAGCCTGTGCCAACTCTCTGCATTCCCTGATCTCCATCCCTGTGGCTGTCACCCTTGGTCACCTCCGTGCTGT
 161 CACTGCCATCTCCCCCCTGACCCCTCTAACCCATCCTCTGCCTCCCTCCCTGCAGTCAGAGGGTCCTGTTCCCATCAGCG
 241 ATTCCCCTGCTTAAACCCTTCCATGACTCCCCACTGCCCTAAGCTGAGGTCAGTCTCCCAAGCCTGGCATGTGGCCCTCT
 321 GGATCTGGGTTCCATCTCTGTCTCCAGCCTGCCCACTTCCCTTCATGAATGTTGGGTTCTAGCTCCCTGTTCTCCAAACC
 401 CATACTACACATCCCACTTCTGGGTCTTTGCCTGGGATGTTGCTGACACCCAGAAAGTCCCACCACCTGCACATGTGTAG
 481 CCCCACCAGCCCTCCAAGGCATTGCTCGCCCAAGCAGCTGGTAATTCCATTTCATGTATTAGATGTCCCCTGGCCCTCTG
 561 TCCCCTCTTAATAACCCTAGTCACAGTCTCCGCAGATTCTTGGGATTTGGGGGTTTTCTCCCCCACCTCTCCACTAGTTG
 641 GACCAAGGTTTCTAGCTAAGTTACTCTAGTCTCCAAGCCTCTAGCATAGAGCACTGCAGACAGGCCCTGGCTCAGAATCA
 721 GAGCCCAGAAAGTGGCTGCAGACAAAATCAATAAAACTAATGTCCCTCCCCTCTCCCTGCCAAAAGGCAGTTACATATCA
 801 ATACAGAGACTCAAGGTCACTAGAAATGGGCCAGCTGGGTCAATGTGAAGCCCCAAATTTGCCCAGATTCACCTTTCTTC
 881 CCCCACTCCCTTTTTTTTTTTTTTTTTGAGATGGAGTTTCGCTCTTGTCACCCACGCTGGAGTGCAATGGTGTGGTCTTG
 961 GCTTATTGAAGCCTCTGCCTCCTGGGTTCAAGTGATTCTCTTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGTTCCTG
1041 CTACCACGCCCAGCTAATTTTTGTATTTTTAGTAGAGACGAGGCTTCACCATGTTGGCCAGGCTGGTCTCGAACTCCTGT
1121 CCTCAGGTAATCCGCCCACCTCAGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACAGTGCCTGGCCTCTTCCCTCT
1201 CCCCACCCCCCCCCCAACTTTTTTTTTTTTTTATGGCAGGGTCTCACTCTGTCGCCCAGGCTGGAGTGCAGTGGCGTGAT
1281 CTCGGCTCACTACAACCTCGACCTCCTGGGTTCAAGCGATTCTCCCACCCCAGCCTCCCAAGTAGCTGGGATTACAGGTG
1361 TGTGCCACTACGGCTGGCTAATTTTTGTATTTTTAGTAGAGACAGGTTTCACCATATTGGCCAGGCTGGTCTTGAACTCC
1441 TGACCTCAAGTGATCCACCTTCCTTGTGCTCCCAAAGTGCTGAGATTACAGGCGTGAGCTATCACACCCAGCCTCCCCCT
1521 TTTTTTCCTAATAGGAGACTCCTGTACCTTTCTTCGTTTTACCTATGTGTCGTGTCTGCTTACATTTCCTTCTCCCCTCA
1601 GGCTTTTTTTGGGTGGTCCTCCAACCTCCAATACCCAGGCCTGGCCTCTTCAGAGTACCCCCCATTCCACTTTCCCTGCC
1681 TCCTTCCTTAAATAGCTGACAATCAAATTCATGCTATGGTGTGAAAGACTACCTTTGACTTGGTATTATAAGCTGGAGTT
1761 ATATATGTATTTGAAAACAGAGTAAATACTTAAGAGGCCAAATAGATGAATGGAAGAATTTTAGGAACTGTGAGAGGGGG
1841 ACAAGGTGGAGCTTTCCTGGCCCTGGGAGGAAGCTGGCTGTGGTAGCGTAGCGCTCTCTCTCTCTGTCTGTGGCAGGAGG
1921 CAAAGAGTAGGGTGTAATTGAGTGAAGGAATCCTGGGTAGAGACCATTCTCAGGTGGTTGGGCCAGGCTAAAGACTGGGA
2001 TTTGGGTCTATCTATGCCTTTCTGGCTGATTTTTGTAGAGACGGGGTTTTGCCATGTTACCCAGGCTGGTCTCAAACTCC
2081 TGGGCTCAAGCGATCCTCCTGGCTCAGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGTCACTGCGCCTGGCTTCCTCTT
2161 CCTCTTGAGAAATATTCTTTTCATACAGCAAGTATGGGACAGCAGTGTCCCAGGTAAAGGACATAAATGTTACAAGTGTC
2241 TGGTCCTTTCTGAGGGAGGCTGGTGCCGCTCTGCAGGGTATTTGAACCTGTGGAATTGGAGGAGGCCATTTCACTCCCTG
2321 AACCCAGCCTGACAAATCACAGTGAGAATGTTCACCTTATAGGCTTGCTGTGGGGCTCAGGTTGAAAGTGTGGGGAGTGA
2401 CACTGCCTAGGCATCCAGCTCAGTGTCATCCAGGGCCTGTGTCCCTCCCGAACCCAGGGTCAACCTGCCTACCACAGGCA
2481 CTAGAAGGACGAATCTGCCTACTGCCCATGAACGGGGCCCTCAAGCGTCCTGGGATCTCCTTCTCCCTCCTGTCCTGTCC
2561 TTGCCCCTCAGGACTGCTGGAAAATAAATCCTTTAAAATAGTAAAAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' ugacGUCGGAACUGGAGGGUc 5'
              || |||  :||||||| 
Target 5' cgccCA-CCTCAGCCTCCCAa 3'
1133 - 1152 152.00 -17.00
2
miRNA  3' ugACGUCGGAACUGGAGGGUc 5'
            | | | ||  :||||||| 
Target 5' ccTCCTGGCTCAGCCTCCCAa 3'
2095 - 2115 151.00 -15.90
3
miRNA  3' ugacGUCGGAACUGGAGGGUc 5'
              || ||  | ||||||| 
Target 5' ctccCACCCCAG-CCTCCCAa 3'
1322 - 1341 148.00 -14.40
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN30104339 6 COSMIC
COSN30492270 17 COSMIC
COSN30449873 33 COSMIC
COSN26969624 44 COSMIC
COSN29132791 57 COSMIC
COSN30134519 84 COSMIC
COSN15661734 98 COSMIC
COSN21182939 241 COSMIC
COSN16855816 323 COSMIC
COSN1701209 407 COSMIC
COSN26689101 846 COSMIC
COSN28198189 886 COSMIC
COSN27341872 1207 COSMIC
COSN19194361 1218 COSMIC
COSN22233395 1220 COSMIC
COSN23952516 1417 COSMIC
COSN15660767 1593 COSMIC
COSN5177013 1653 COSMIC
COSN8503003 1847 COSMIC
COSN23161016 1895 COSMIC
COSN15025528 1945 COSMIC
COSN8503004 2158 COSMIC
COSN25324080 2514 COSMIC
COSN15367203 2533 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs746610367 3 dbSNP
rs201050913 6 dbSNP
rs776190001 8 dbSNP
rs759032926 12 dbSNP
rs1406401917 14 dbSNP
rs1455898839 18 dbSNP
rs765205372 20 dbSNP
rs775459835 21 dbSNP
rs757253583 34 dbSNP
rs1432496110 39 dbSNP
rs1330422688 52 dbSNP
rs1037443738 57 dbSNP
rs1030098920 59 dbSNP
rs953083722 63 dbSNP
rs530767668 74 dbSNP
rs867197880 75 dbSNP
rs1291118175 76 dbSNP
rs552444943 83 dbSNP
rs190203232 84 dbSNP
rs963363313 85 dbSNP
rs1463223763 86 dbSNP
rs1421669264 87 dbSNP
rs974388884 92 dbSNP
rs918818794 114 dbSNP
rs1424311248 115 dbSNP
rs750114390 118 dbSNP
rs34722018 125 dbSNP
rs532498018 149 dbSNP
rs1251477779 150 dbSNP
rs1471851520 151 dbSNP
rs1221962074 154 dbSNP
rs547490406 155 dbSNP
rs981548798 158 dbSNP
rs1197526611 161 dbSNP
rs1179425909 163 dbSNP
rs1409414286 164 dbSNP
rs928743371 169 dbSNP
rs937388996 173 dbSNP
rs550822947 175 dbSNP
rs1055732358 177 dbSNP
rs564192415 178 dbSNP
rs914612575 178 dbSNP
rs1173291935 180 dbSNP
rs1443560027 182 dbSNP
rs947373511 200 dbSNP
rs1330905167 204 dbSNP
rs1434888732 205 dbSNP
rs1466245522 206 dbSNP
rs1041664141 207 dbSNP
rs903070641 214 dbSNP
rs1424299859 222 dbSNP
rs1194104239 235 dbSNP
rs532883204 240 dbSNP
rs1411476387 241 dbSNP
rs1223580811 243 dbSNP
rs1177657327 258 dbSNP
rs1457892065 267 dbSNP
rs1051556231 277 dbSNP
rs1252564132 288 dbSNP
rs1207334712 289 dbSNP
rs1312187476 304 dbSNP
rs1280044929 311 dbSNP
rs1279934555 316 dbSNP
rs376815927 320 dbSNP
rs1237019953 329 dbSNP
rs1375110605 330 dbSNP
rs888874177 333 dbSNP
rs1366764084 335 dbSNP
rs1447824287 343 dbSNP
rs565764409 345 dbSNP
rs1375728495 349 dbSNP
rs1217438723 351 dbSNP
rs1301176224 356 dbSNP
rs1299205436 366 dbSNP
rs1465607134 366 dbSNP
rs1350166220 373 dbSNP
rs1007348717 375 dbSNP
rs548131334 381 dbSNP
rs1235288149 383 dbSNP
rs35849109 390 dbSNP
rs1378272568 394 dbSNP
rs1177712330 401 dbSNP
rs1482264109 402 dbSNP
rs1419302058 403 dbSNP
rs963098150 418 dbSNP
rs1252224360 421 dbSNP
rs170360 451 dbSNP
rs569910237 455 dbSNP
rs1025911725 458 dbSNP
rs951609426 464 dbSNP
rs749486222 478 dbSNP
rs537248925 482 dbSNP
rs1396347646 486 dbSNP
rs768981907 497 dbSNP
rs559162996 501 dbSNP
rs1352086941 504 dbSNP
rs1454388322 505 dbSNP
rs1219857713 508 dbSNP
rs1290545606 509 dbSNP
rs1310834409 511 dbSNP
rs1395577432 522 dbSNP
rs1380017476 525 dbSNP
rs928774277 528 dbSNP
rs1416553417 533 dbSNP
rs41426048 537 dbSNP
rs1431277982 539 dbSNP
rs577479773 545 dbSNP
rs1454108627 546 dbSNP
rs1365231195 559 dbSNP
rs1162221699 565 dbSNP
rs991572870 568 dbSNP
rs1417982389 571 dbSNP
rs1189376533 590 dbSNP
rs914624047 592 dbSNP
rs947422489 593 dbSNP
rs1206155457 597 dbSNP
rs1487042487 606 dbSNP
rs1263945983 609 dbSNP
rs1349096540 610 dbSNP
rs1434143686 614 dbSNP
rs1295203208 615 dbSNP
rs1216867554 624 dbSNP
rs149238009 625 dbSNP
rs1297480960 628 dbSNP
rs1042087094 634 dbSNP
rs924552869 636 dbSNP
rs1295284677 638 dbSNP
rs1386906470 639 dbSNP
rs1291525498 642 dbSNP
rs774576791 648 dbSNP
rs1051672820 657 dbSNP
rs1056063094 675 dbSNP
rs1457109673 679 dbSNP
rs1418045645 682 dbSNP
rs1166556826 690 dbSNP
rs1476549478 694 dbSNP
rs1423612340 709 dbSNP
rs552674228 718 dbSNP
rs749216189 720 dbSNP
rs1007379596 733 dbSNP
rs1265719999 735 dbSNP
rs1209544451 743 dbSNP
rs1469123502 745 dbSNP
rs1275269204 758 dbSNP
rs1196882448 763 dbSNP
rs1317339190 767 dbSNP
rs1340250335 768 dbSNP
rs1216553231 777 dbSNP
rs1274082982 781 dbSNP
rs1270803331 788 dbSNP
rs1037486603 796 dbSNP
rs898884234 803 dbSNP
rs548515558 805 dbSNP
rs1386006027 806 dbSNP
rs377523389 811 dbSNP
rs1327482400 814 dbSNP
rs541938054 816 dbSNP
rs144628416 821 dbSNP
rs1468522522 822 dbSNP
rs78507648 834 dbSNP
rs1035901630 835 dbSNP
rs1376423120 839 dbSNP
rs958888951 851 dbSNP
rs992037787 857 dbSNP
rs1255169571 863 dbSNP
rs1177037714 865 dbSNP
rs1021729542 867 dbSNP
rs969167490 868 dbSNP
rs896022967 872 dbSNP
rs977456456 873 dbSNP
rs1412787740 882 dbSNP
rs1403433571 885 dbSNP
rs1014270305 886 dbSNP
rs1042088561 888 dbSNP
rs1456666510 889 dbSNP
rs1305312414 890 dbSNP
rs11405534 891 dbSNP
rs1231121021 891 dbSNP
rs1397296053 891 dbSNP
rs1400752455 891 dbSNP
rs1435841903 891 dbSNP
rs1319891325 892 dbSNP
rs1439324181 893 dbSNP
rs1363131697 894 dbSNP
rs1276661895 909 dbSNP
rs1271058355 912 dbSNP
rs1378862025 917 dbSNP
rs148490868 921 dbSNP
rs1254048103 922 dbSNP
rs1275467321 925 dbSNP
rs1336057936 927 dbSNP
rs933304717 936 dbSNP
rs1265636802 937 dbSNP
rs987406390 946 dbSNP
rs910456238 947 dbSNP
rs943198692 948 dbSNP
rs1279745546 951 dbSNP
rs1443790074 953 dbSNP
rs1338222075 958 dbSNP
rs1311692275 971 dbSNP
rs1037917818 973 dbSNP
rs1296808307 978 dbSNP
rs1419469634 987 dbSNP
rs1409054300 993 dbSNP
rs1160484322 1000 dbSNP
rs141775982 1001 dbSNP
rs1367995592 1002 dbSNP
rs929015410 1008 dbSNP
rs1188681232 1014 dbSNP
rs1485994687 1018 dbSNP
rs564371404 1019 dbSNP
rs1214237405 1028 dbSNP
rs1236582290 1045 dbSNP
rs371015520 1048 dbSNP
rs558501857 1049 dbSNP
rs528352627 1050 dbSNP
rs546907714 1052 dbSNP
rs1353748995 1058 dbSNP
rs1292138840 1068 dbSNP
rs1276833932 1080 dbSNP
rs1357979275 1080 dbSNP
rs576653011 1081 dbSNP
rs182510464 1082 dbSNP
rs1320639291 1085 dbSNP
rs1403829984 1090 dbSNP
rs771562025 1093 dbSNP
rs1165817601 1094 dbSNP
rs74390076 1099 dbSNP
rs1418308589 1111 dbSNP
rs1456584992 1112 dbSNP
rs1156925995 1121 dbSNP
rs759010451 1124 dbSNP
rs1382874826 1127 dbSNP
rs1191454275 1130 dbSNP
rs1402566622 1133 dbSNP
rs548229280 1135 dbSNP
rs1358753393 1137 dbSNP
rs1272134892 1140 dbSNP
rs569822305 1141 dbSNP
rs1213828379 1167 dbSNP
rs1446134215 1171 dbSNP
rs1275717822 1172 dbSNP
rs1214526629 1175 dbSNP
rs1341986731 1176 dbSNP
rs1272298162 1183 dbSNP
rs1295432755 1186 dbSNP
rs1370591445 1187 dbSNP
rs1326787250 1191 dbSNP
rs1463172540 1198 dbSNP
rs1398226561 1199 dbSNP
rs1184008934 1201 dbSNP
rs903166962 1201 dbSNP
rs1356523294 1204 dbSNP
rs1476907240 1204 dbSNP
rs1193914190 1205 dbSNP
rs1252035117 1205 dbSNP
rs1000265398 1206 dbSNP
rs1491331252 1206 dbSNP
rs373811356 1206 dbSNP
rs796165453 1206 dbSNP
rs796255674 1206 dbSNP
rs1394278227 1207 dbSNP
rs369352628 1207 dbSNP
rs57450696 1207 dbSNP
rs148517008 1208 dbSNP
rs57186204 1208 dbSNP
rs375455988 1209 dbSNP
rs867546666 1209 dbSNP
rs1287082368 1210 dbSNP
rs1330899609 1211 dbSNP
rs1353298846 1212 dbSNP
rs796911439 1212 dbSNP
rs537614594 1213 dbSNP
rs1301117221 1214 dbSNP
rs796311331 1214 dbSNP
rs1313334233 1215 dbSNP
rs1270536632 1216 dbSNP
rs866363216 1217 dbSNP
rs1028915978 1218 dbSNP
rs1260464790 1219 dbSNP
rs1421203776 1219 dbSNP
rs1487495103 1219 dbSNP
rs34460030 1219 dbSNP
rs397959241 1219 dbSNP
rs60232455 1219 dbSNP
rs1205150285 1220 dbSNP
rs1277336293 1226 dbSNP
rs1440271510 1233 dbSNP
rs1476303767 1234 dbSNP
rs1257949604 1235 dbSNP
rs1472180400 1236 dbSNP
rs1293794500 1237 dbSNP
rs1416496992 1242 dbSNP
rs1179885086 1247 dbSNP
rs1382533263 1248 dbSNP
rs223822 1254 dbSNP
rs1453998583 1255 dbSNP
rs1346591052 1258 dbSNP
rs1162241953 1270 dbSNP
rs552858868 1276 dbSNP
rs1419260202 1277 dbSNP
rs1190739579 1282 dbSNP
rs1427210044 1284 dbSNP
rs139915589 1285 dbSNP
rs1424557249 1286 dbSNP
rs187546931 1290 dbSNP
rs1433032501 1293 dbSNP
rs1271498189 1296 dbSNP
rs1213183330 1298 dbSNP
rs1335577971 1300 dbSNP
rs1315081451 1301 dbSNP
rs1324545402 1302 dbSNP
rs1294672923 1313 dbSNP
rs1376442545 1317 dbSNP
rs223823 1318 dbSNP
rs1327290345 1323 dbSNP
rs1460557536 1329 dbSNP
rs1394611903 1337 dbSNP
rs1166397668 1346 dbSNP
rs762496411 1356 dbSNP
rs1460924809 1358 dbSNP
rs1338006246 1361 dbSNP
rs1194418934 1363 dbSNP
rs1003144529 1367 dbSNP
rs1430645700 1372 dbSNP
rs1035932830 1373 dbSNP
rs1193263448 1377 dbSNP
rs1469028414 1380 dbSNP
rs1254966508 1388 dbSNP
rs1194144970 1390 dbSNP
rs191695691 1397 dbSNP
rs1273668732 1400 dbSNP
rs223824 1401 dbSNP
rs1236033723 1404 dbSNP
rs113088331 1405 dbSNP
rs1439728786 1407 dbSNP
rs1280647226 1408 dbSNP
rs1327396320 1416 dbSNP
rs1482593335 1417 dbSNP
rs1022176162 1430 dbSNP
rs968905249 1434 dbSNP
rs535448121 1443 dbSNP
rs977946455 1449 dbSNP
rs1438259926 1454 dbSNP
rs1198096657 1462 dbSNP
rs1173344850 1465 dbSNP
rs751278557 1466 dbSNP
rs1452734679 1468 dbSNP
rs1175729795 1469 dbSNP
rs1437292819 1478 dbSNP
rs1395863262 1481 dbSNP
rs183969989 1483 dbSNP
rs1251273045 1487 dbSNP
rs1031741394 1494 dbSNP
rs954720555 1495 dbSNP
rs1277938989 1499 dbSNP
rs1233272779 1505 dbSNP
rs1348229949 1507 dbSNP
rs1276215695 1509 dbSNP
rs987442266 1510 dbSNP
rs910492047 1513 dbSNP
rs943244045 1518 dbSNP
rs1166445083 1520 dbSNP
rs1393662988 1520 dbSNP
rs1399094123 1523 dbSNP
rs1435694202 1526 dbSNP
rs1397171048 1527 dbSNP
rs139702353 1533 dbSNP
rs920458542 1543 dbSNP
rs1469781334 1545 dbSNP
rs149762298 1556 dbSNP
rs1368110914 1557 dbSNP
rs557651869 1564 dbSNP
rs929153046 1565 dbSNP
rs188976305 1572 dbSNP
rs1255309112 1573 dbSNP
rs1209935412 1576 dbSNP
rs781226024 1578 dbSNP
rs1303534819 1583 dbSNP
rs750417868 1585 dbSNP
rs1280430482 1593 dbSNP
rs756205259 1595 dbSNP
rs1054677448 1601 dbSNP
rs151292920 1604 dbSNP
rs57753363 1604 dbSNP
rs1279688968 1609 dbSNP
rs1229694777 1612 dbSNP
rs894738918 1615 dbSNP
rs1293189763 1619 dbSNP
rs1415882769 1625 dbSNP
rs1339903366 1626 dbSNP
rs1316595468 1630 dbSNP
rs1400354018 1632 dbSNP
rs1385926610 1635 dbSNP
rs1209166105 1649 dbSNP
rs779983435 1655 dbSNP
rs1415642748 1658 dbSNP
rs1459909707 1658 dbSNP
rs540151675 1664 dbSNP
rs1467181099 1671 dbSNP
rs374136264 1680 dbSNP
rs999018780 1691 dbSNP
rs1190744187 1694 dbSNP
rs1446138012 1710 dbSNP
rs1284485067 1713 dbSNP
rs145699540 1720 dbSNP
rs1031772317 1728 dbSNP
rs72786863 1741 dbSNP
rs371730426 1751 dbSNP
rs563410307 1759 dbSNP
rs1017585225 1765 dbSNP
rs530890537 1766 dbSNP
rs973767943 1768 dbSNP
rs1268846180 1780 dbSNP
rs1430453923 1781 dbSNP
rs1327285528 1783 dbSNP
rs1322777921 1798 dbSNP
rs1392858026 1802 dbSNP
rs779241518 1803 dbSNP
rs1325915845 1808 dbSNP
rs1461952385 1814 dbSNP
rs1415870291 1815 dbSNP
rs1165984704 1816 dbSNP
rs1474948420 1823 dbSNP
rs1242437461 1824 dbSNP
rs867294249 1826 dbSNP
rs1466810071 1835 dbSNP
rs983220446 1839 dbSNP
rs1213756381 1844 dbSNP
rs1324094059 1847 dbSNP
rs121565 1850 dbSNP
rs1380159638 1853 dbSNP
rs1297361646 1858 dbSNP
rs1340523582 1862 dbSNP
rs1300216305 1864 dbSNP
rs767573623 1865 dbSNP
rs1439006834 1873 dbSNP
rs1370515579 1878 dbSNP
rs570949865 1879 dbSNP
rs528732169 1885 dbSNP
rs772454035 1888 dbSNP
rs946382452 1889 dbSNP
rs1336767862 1893 dbSNP
rs1170183374 1894 dbSNP
rs1394095658 1894 dbSNP
rs376775833 1894 dbSNP
rs547269329 1894 dbSNP
rs1193759723 1896 dbSNP
rs1489161578 1897 dbSNP
rs1230622541 1900 dbSNP
rs140558762 1903 dbSNP
rs1438844644 1907 dbSNP
rs569213575 1920 dbSNP
rs1063696 1921 dbSNP
rs1277292339 1922 dbSNP
rs904742843 1926 dbSNP
rs999449915 1932 dbSNP
rs535406932 1933 dbSNP
rs920304966 1934 dbSNP
rs890554711 1939 dbSNP
rs373590059 1955 dbSNP
rs1009021779 1961 dbSNP
rs1017699697 1963 dbSNP
rs965097225 1965 dbSNP
rs994836764 1966 dbSNP
rs1297616970 1972 dbSNP
rs1371316917 1972 dbSNP
rs750721247 1975 dbSNP
rs557018124 1987 dbSNP
rs1371073734 1990 dbSNP
rs950623536 1994 dbSNP
rs1187198880 1997 dbSNP
rs1432595579 1997 dbSNP
rs4784800 2003 dbSNP
rs1476444508 2006 dbSNP
rs541594277 2020 dbSNP
rs960525786 2027 dbSNP
rs990550354 2036 dbSNP
rs1387233450 2043 dbSNP
rs1176113720 2044 dbSNP
rs192464791 2045 dbSNP
rs1209244866 2046 dbSNP
rs1290250459 2056 dbSNP
rs1315293140 2058 dbSNP
rs1306457559 2069 dbSNP
rs1351073110 2072 dbSNP
rs1385148922 2091 dbSNP
rs946386380 2092 dbSNP
rs1043373020 2093 dbSNP
rs926202255 2099 dbSNP
rs774861075 2101 dbSNP
rs1467315840 2102 dbSNP
rs149014236 2104 dbSNP
rs1157787925 2112 dbSNP
rs1457293299 2133 dbSNP
rs1413471103 2134 dbSNP
rs890668832 2135 dbSNP
rs944839348 2137 dbSNP
rs658559 2139 dbSNP
rs900557047 2146 dbSNP
rs540429975 2147 dbSNP
rs555206428 2148 dbSNP
rs1260329824 2152 dbSNP
rs1216650910 2153 dbSNP
rs1210464663 2157 dbSNP
rs1271305474 2159 dbSNP
rs1231380660 2162 dbSNP
rs1354673587 2176 dbSNP
rs1313250646 2177 dbSNP
rs1408924927 2178 dbSNP
rs41466149 2187 dbSNP
rs1027621167 2188 dbSNP
rs111566579 2193 dbSNP
rs1189259754 2196 dbSNP
rs1435316056 2200 dbSNP
rs751280873 2205 dbSNP
rs1411947463 2215 dbSNP
rs1390212501 2216 dbSNP
rs1162101852 2222 dbSNP
rs1461432347 2224 dbSNP
rs1369545333 2239 dbSNP
rs1167398484 2246 dbSNP
rs1417863951 2251 dbSNP
rs1160610078 2264 dbSNP
rs544125464 2268 dbSNP
rs183599855 2269 dbSNP
rs1466366771 2270 dbSNP
rs41416644 2277 dbSNP
rs1213141697 2285 dbSNP
rs1310741924 2288 dbSNP
rs1246842810 2291 dbSNP
rs1004795336 2294 dbSNP
rs1294504475 2298 dbSNP
rs1415231145 2300 dbSNP
rs41494547 2303 dbSNP
rs375730262 2306 dbSNP
rs1323386814 2310 dbSNP
rs545980376 2324 dbSNP
rs1225423605 2325 dbSNP
rs1392139936 2326 dbSNP
rs1295824575 2330 dbSNP
rs960555001 2334 dbSNP
rs990582823 2341 dbSNP
rs1460879163 2342 dbSNP
rs761660962 2344 dbSNP
rs1372870489 2352 dbSNP
rs1169551945 2361 dbSNP
rs950374181 2368 dbSNP
rs1023822605 2375 dbSNP
rs564609618 2376 dbSNP
rs1451620499 2383 dbSNP
rs1317643887 2387 dbSNP
rs528637308 2396 dbSNP
rs1233799465 2399 dbSNP
rs187177530 2401 dbSNP
rs1452280526 2405 dbSNP
rs147729648 2407 dbSNP
rs1479585818 2411 dbSNP
rs1211968749 2414 dbSNP
rs1232662937 2419 dbSNP
rs1479918891 2422 dbSNP
rs979517442 2423 dbSNP
rs1179517054 2436 dbSNP
rs1250581557 2437 dbSNP
rs1300775163 2443 dbSNP
rs1232014300 2450 dbSNP
rs529591010 2451 dbSNP
rs1171352809 2455 dbSNP
rs1041959354 2464 dbSNP
rs1302673690 2466 dbSNP
rs1390178981 2469 dbSNP
rs223825 2472 dbSNP
rs1373980375 2477 dbSNP
rs1434953845 2481 dbSNP
rs191686907 2486 dbSNP
rs1478441141 2491 dbSNP
rs557527318 2492 dbSNP
rs1179737347 2497 dbSNP
rs912135757 2504 dbSNP
rs1352568036 2507 dbSNP
rs1250945148 2514 dbSNP
rs1444268281 2515 dbSNP
rs1483926288 2519 dbSNP
rs1277873829 2521 dbSNP
rs1199526488 2525 dbSNP
rs944870544 2528 dbSNP
rs1236246056 2531 dbSNP
rs530786381 2533 dbSNP
rs1289550209 2536 dbSNP
rs1039180254 2538 dbSNP
rs183824698 2551 dbSNP
rs900591741 2553 dbSNP
rs376864618 2554 dbSNP
rs1404618163 2560 dbSNP
rs552658690 2565 dbSNP
rs1301351656 2566 dbSNP
rs1412735576 2578 dbSNP
rs1350237127 2580 dbSNP
rs1473492376 2583 dbSNP
rs1235332901 2586 dbSNP
rs886465010 2591 dbSNP
rs1186558435 2599 dbSNP
rs1442707337 2601 dbSNP
rs1004824716 2602 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HEK293S
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in GSM1084044. RNA binding protein: AGO2. Condition:CLIP_noarsenite_rep3 HITS-CLIP data was present in GSM1084065. RNA binding protein: AGO2. Condition:CLIP_emetine_AbnovaAb HITS-CLIP data was present in GSM1084073. RNA binding protein: AGO2. Condition:CLIP_hippuristanol_rep1_AbnovaAb ...

- Karginov FV; Hannon GJ, 2013, Genes & development.

Article - Karginov FV; Hannon GJ
- Genes & development, 2013
When adapting to environmental stress, cells attenuate and reprogram their translational output. In part, these altered translation profiles are established through changes in the interactions between RNA-binding proteins and mRNAs. The Argonaute 2 (Ago2)/microRNA (miRNA) machinery has been shown to participate in stress-induced translational up-regulation of a particular mRNA, CAT-1; however, a detailed, transcriptome-wide understanding of the involvement of Ago2 in the process has been lacking. Here, we profiled the overall changes in Ago2-mRNA interactions upon arsenite stress by cross-linking immunoprecipitation (CLIP) followed by high-throughput sequencing (CLIP-seq). Ago2 displayed a significant remodeling of its transcript occupancy, with the majority of 3' untranslated region (UTR) and coding sequence (CDS) sites exhibiting stronger interaction. Interestingly, target sites that were destined for release from Ago2 upon stress were depleted in miRNA complementarity signatures, suggesting an alternative mode of interaction. To compare the changes in Ago2-binding patterns across transcripts with changes in their translational states, we measured mRNA profiles on ribosome/polysome gradients by RNA sequencing (RNA-seq). Increased Ago2 occupancy correlated with stronger repression of translation for those mRNAs, as evidenced by a shift toward lighter gradient fractions upon stress, while release of Ago2 was associated with the limited number of transcripts that remained translated. Taken together, these data point to a role for Ago2 and the mammalian miRNAs in mediating the translational component of the stress response.
LinkOut: [PMID: 23824327]
CLIP-seq Support 1 for dataset GSM1084044
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_noarsenite_rep3
Location of target site ENST00000219235.4 | 3UTR | GGCUCAGCCUCCCAAAGUGCUGGGAUUACAGGCGUGA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM1084065
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_emetine_AbnovaAb
Location of target site ENST00000219235.4 | 3UTR | GGCUCAGCCUCCCAAAGUGCUGGGAUUACAG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
CLIP-seq Support 3 for dataset GSM1084073
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_hippuristanol_rep1_AbnovaAb
Location of target site ENST00000219235.4 | 3UTR | GCUCAGCCUCCCAAAGU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
494 hsa-miR-1273h-5p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT074355 TNRC6A trinucleotide repeat containing 6A 2 2
MIRT100721 TJAP1 tight junction associated protein 1 2 2
MIRT115545 MAZ MYC associated zinc finger protein 2 2
MIRT124982 XIAP X-linked inhibitor of apoptosis 2 4
MIRT139911 BTF3L4 basic transcription factor 3 like 4 2 6
MIRT177183 ARL5B ADP ribosylation factor like GTPase 5B 2 4
MIRT187994 MBD6 methyl-CpG binding domain protein 6 2 2
MIRT207410 MAT2A methionine adenosyltransferase 2A 2 6
MIRT241928 DYRK2 dual specificity tyrosine phosphorylation regulated kinase 2 2 2
MIRT260110 KLHL21 kelch like family member 21 2 2
MIRT260358 XRCC6 X-ray repair cross complementing 6 2 6
MIRT266428 RPRD2 regulation of nuclear pre-mRNA domain containing 2 2 2
MIRT294663 ZNF548 zinc finger protein 548 2 2
MIRT351039 PLEKHB2 pleckstrin homology domain containing B2 2 2
MIRT379943 PRRG4 proline rich and Gla domain 4 2 2
MIRT398983 KAT7 lysine acetyltransferase 7 2 2
MIRT441465 BEST3 bestrophin 3 2 2
MIRT446750 ZNF491 zinc finger protein 491 2 2
MIRT449224 RAD51B RAD51 paralog B 2 2
MIRT450623 AQR aquarius intron-binding spliceosomal factor 2 2
MIRT451090 ZNF584 zinc finger protein 584 2 2
MIRT451558 CIAPIN1 cytokine induced apoptosis inhibitor 1 2 2
MIRT451736 CES3 carboxylesterase 3 2 2
MIRT452411 QDPR quinoid dihydropteridine reductase 2 2
MIRT452559 ZFP69B ZFP69 zinc finger protein B 2 2
MIRT452851 LAX1 lymphocyte transmembrane adaptor 1 2 2
MIRT452922 DISC1 disrupted in schizophrenia 1 2 2
MIRT453043 TANGO2 transport and golgi organization 2 homolog 2 4
MIRT453097 HOXC4 homeobox C4 2 2
MIRT453297 ZNF394 zinc finger protein 394 2 2
MIRT453593 ZNF557 zinc finger protein 557 2 2
MIRT453787 KBTBD12 kelch repeat and BTB domain containing 12 2 2
MIRT453987 CECR1 adenosine deaminase 2 2 2
MIRT454083 TMEM209 transmembrane protein 209 2 2
MIRT454652 FBXL18 F-box and leucine rich repeat protein 18 2 2
MIRT454753 PFKFB3 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3 2 2
MIRT455311 TTLL9 tubulin tyrosine ligase like 9 2 2
MIRT456468 SERAC1 serine active site containing 1 2 2
MIRT456554 TOMM20 translocase of outer mitochondrial membrane 20 2 2
MIRT456716 TMEM239 transmembrane protein 239 2 4
MIRT456796 SIGLEC14 sialic acid binding Ig like lectin 14 2 2
MIRT457487 SLC35F6 solute carrier family 35 member F6 2 2
MIRT457999 MRPL12 mitochondrial ribosomal protein L12 2 2
MIRT458130 TLCD2 TLC domain containing 2 2 2
MIRT459027 ZNF490 zinc finger protein 490 2 4
MIRT459119 FADS6 fatty acid desaturase 6 2 2
MIRT459315 HAVCR2 hepatitis A virus cellular receptor 2 2 2
MIRT459385 MPLKIP M-phase specific PLK1 interacting protein 2 2
MIRT459412 FAM83B family with sequence similarity 83 member B 2 2
MIRT459974 RFT1 RFT1 homolog 2 2
MIRT460480 FAM105A family with sequence similarity 105 member A 2 6
MIRT460586 FEM1A fem-1 homolog A 2 2
MIRT460920 NOA1 nitric oxide associated 1 2 4
MIRT461072 OPA3 OPA3, outer mitochondrial membrane lipid metabolism regulator 2 2
MIRT461590 DPH2 DPH2 homolog 2 2
MIRT461854 ZNF317 zinc finger protein 317 2 2
MIRT462176 ACADL acyl-CoA dehydrogenase, long chain 2 2
MIRT462446 GCDH glutaryl-CoA dehydrogenase 2 2
MIRT463854 WNT7B Wnt family member 7B 2 2
MIRT464310 UST uronyl 2-sulfotransferase 2 2
MIRT464815 UBE2B ubiquitin conjugating enzyme E2 B 2 2
MIRT465453 TOR2A torsin family 2 member A 2 2
MIRT466073 TMEM184C transmembrane protein 184C 2 2
MIRT466514 TBXA2R thromboxane A2 receptor 2 2
MIRT467072 SRRD SRR1 domain containing 2 2
MIRT469551 RARA retinoic acid receptor alpha 2 2
MIRT469741 RAB2B RAB2B, member RAS oncogene family 2 2
MIRT470759 PNPLA6 patatin like phospholipase domain containing 6 2 2
MIRT470875 PLXND1 plexin D1 2 2
MIRT470976 PITPNA phosphatidylinositol transfer protein alpha 2 2
MIRT471048 PIM3 Pim-3 proto-oncogene, serine/threonine kinase 2 2
MIRT471215 PHAX phosphorylated adaptor for RNA export 2 2
MIRT471246 PGM2L1 phosphoglucomutase 2 like 1 2 2
MIRT471286 PGAM4 phosphoglycerate mutase family member 4 2 2
MIRT471467 PDE7B phosphodiesterase 7B 2 2
MIRT473069 MORN4 MORN repeat containing 4 2 4
MIRT473989 LRRC20 leucine rich repeat containing 20 2 2
MIRT474518 KLHDC8A kelch domain containing 8A 2 2
MIRT474990 KANSL1 KAT8 regulatory NSL complex subunit 1 2 2
MIRT475547 HNRNPUL1 heterogeneous nuclear ribonucleoprotein U like 1 2 2
MIRT476350 GIGYF1 GRB10 interacting GYF protein 1 2 2
MIRT477298 EPHB2 EPH receptor B2 2 2
MIRT477933 DPM2 dolichyl-phosphate mannosyltransferase subunit 2, regulatory 2 2
MIRT478282 DDX19A DEAD-box helicase 19A 2 4
MIRT478472 CYP20A1 cytochrome P450 family 20 subfamily A member 1 2 2
MIRT478559 CTNND1 catenin delta 1 2 2
MIRT478618 CTDNEP1 CTD nuclear envelope phosphatase 1 2 2
MIRT478834 CRISPLD2 cysteine rich secretory protein LCCL domain containing 2 2 2
MIRT479007 COL5A1 collagen type V alpha 1 chain 2 2
MIRT479166 CLSPN claspin 2 2
MIRT482454 ADAR adenosine deaminase, RNA specific 2 4
MIRT483019 KHSRP KH-type splicing regulatory protein 2 4
MIRT483798 CYP2W1 cytochrome P450 family 2 subfamily W member 1 2 6
MIRT486087 SLC7A5 solute carrier family 7 member 5 2 4
MIRT486304 SIPA1 signal-induced proliferation-associated 1 2 2
MIRT486490 MYH11 myosin heavy chain 11 2 2
MIRT486881 TSPYL4 TSPY like 4 2 2
MIRT487125 NCOR2 nuclear receptor corepressor 2 2 2
MIRT487542 TM6SF2 transmembrane 6 superfamily member 2 2 4
MIRT487676 B3GALT5 beta-1,3-galactosyltransferase 5 2 4
MIRT489251 TTLL1 tubulin tyrosine ligase like 1 2 4
MIRT489276 RBM8A RNA binding motif protein 8A 2 8
MIRT489496 CRLF3 cytokine receptor like factor 3 2 4
MIRT489571 SSBP2 single stranded DNA binding protein 2 2 2
MIRT489694 SCAMP4 secretory carrier membrane protein 4 2 2
MIRT490166 TMEM63C transmembrane protein 63C 2 2
MIRT491199 MLLT1 MLLT1, super elongation complex subunit 2 4
MIRT491260 DHX40 DEAH-box helicase 40 2 2
MIRT491385 HAUS3 HAUS augmin like complex subunit 3 2 2
MIRT491548 YAE1D1 Yae1 domain containing 1 2 2
MIRT492722 PHF12 PHD finger protein 12 2 2
MIRT493866 FAM73B mitoguardin 2 2 4
MIRT494549 BAK1 BCL2 antagonist/killer 1 2 2
MIRT498586 KRT8 keratin 8 2 2
MIRT498722 SNTN sentan, cilia apical structure protein 2 6
MIRT499982 HIST1H2BD histone cluster 1 H2B family member d 2 4
MIRT503414 SLC25A45 solute carrier family 25 member 45 2 6
MIRT508491 FTO FTO, alpha-ketoglutarate dependent dioxygenase 2 2
MIRT508877 METTL14 methyltransferase like 14 2 2
MIRT509622 RRP7A ribosomal RNA processing 7 homolog A 2 4
MIRT510104 IRAK3 interleukin 1 receptor associated kinase 3 2 8
MIRT510139 PDGFRA platelet derived growth factor receptor alpha 2 4
MIRT510353 ZNF703 zinc finger protein 703 2 6
MIRT510620 TMEM167A transmembrane protein 167A 2 4
MIRT510786 SF3B3 splicing factor 3b subunit 3 2 6
MIRT511021 NRF1 nuclear respiratory factor 1 2 2
MIRT513925 GHITM growth hormone inducible transmembrane protein 2 2
MIRT514342 DNAH17 dynein axonemal heavy chain 17 2 4
MIRT515015 SUMF2 sulfatase modifying factor 2 2 2
MIRT515246 DUSP28 dual specificity phosphatase 28 2 2
MIRT516202 RPP30 ribonuclease P/MRP subunit p30 2 2
MIRT516435 ADAMTS4 ADAM metallopeptidase with thrombospondin type 1 motif 4 2 4
MIRT516666 ZNF860 zinc finger protein 860 2 4
MIRT518373 ZNF250 zinc finger protein 250 2 2
MIRT518930 LSG1 large 60S subunit nuclear export GTPase 1 2 2
MIRT519676 ZNF70 zinc finger protein 70 2 2
MIRT519902 ZFAND4 zinc finger AN1-type containing 4 2 4
MIRT519945 ZCCHC8 zinc finger CCHC-type containing 8 2 2
MIRT520321 UBXN2A UBX domain protein 2A 2 2
MIRT520606 TMEM41B transmembrane protein 41B 2 2
MIRT520663 TMEM11 transmembrane protein 11 2 2
MIRT520852 SUGT1 SGT1 homolog, MIS12 kinetochore complex assembly cochaperone 2 2
MIRT521443 RAD51 RAD51 recombinase 2 2
MIRT521671 PRKAR2A protein kinase cAMP-dependent type II regulatory subunit alpha 2 2
MIRT522281 NKAP NFKB activating protein 2 2
MIRT522333 NCKIPSD NCK interacting protein with SH3 domain 2 8
MIRT522535 MED28 mediator complex subunit 28 2 6
MIRT523478 GNG4 G protein subunit gamma 4 2 2
MIRT523672 FOPNL FGFR1OP N-terminal like 2 2
MIRT523715 FBXW2 F-box and WD repeat domain containing 2 2 4
MIRT523867 ESCO2 establishment of sister chromatid cohesion N-acetyltransferase 2 2 4
MIRT524043 DNAJC8 DnaJ heat shock protein family (Hsp40) member C8 2 2
MIRT524167 DFFA DNA fragmentation factor subunit alpha 2 2
MIRT524928 ALG10B ALG10B, alpha-1,2-glucosyltransferase 2 2
MIRT526825 PHC1 polyhomeotic homolog 1 2 2
MIRT531017 TDGF1P3 teratocarcinoma-derived growth factor 1 pseudogene 3 2 2
MIRT536085 MBOAT2 membrane bound O-acyltransferase domain containing 2 2 2
MIRT540681 BMP3 bone morphogenetic protein 3 2 2
MIRT541708 TMEM33 transmembrane protein 33 2 2
MIRT541755 KLF8 Kruppel like factor 8 2 2
MIRT541888 LY6G5B lymphocyte antigen 6 family member G5B 2 2
MIRT545714 SPTLC2 serine palmitoyltransferase long chain base subunit 2 2 2
MIRT559054 C19orf47 chromosome 19 open reading frame 47 2 4
MIRT561748 PLAGL2 PLAG1 like zinc finger 2 2 2
MIRT562365 ETV3 ETS variant 3 2 2
MIRT562821 GCFC2 GC-rich sequence DNA-binding factor 2 2 2
MIRT562900 DNAH10OS dynein axonemal heavy chain 10 opposite strand 2 2
MIRT564452 SLC35E2 solute carrier family 35 member E2 2 5
MIRT569111 ONECUT3 one cut homeobox 3 2 2
MIRT569224 SUSD1 sushi domain containing 1 2 2
MIRT570271 ARPC3 actin related protein 2/3 complex subunit 3 2 2
MIRT570498 TFIP11 tuftelin interacting protein 11 2 2
MIRT570844 GPRC5C G protein-coupled receptor class C group 5 member C 2 2
MIRT571311 TPCN2 two pore segment channel 2 2 2
MIRT572077 EXOC8 exocyst complex component 8 2 2
MIRT572116 DNAJC24 DnaJ heat shock protein family (Hsp40) member C24 2 2
MIRT573054 TRIB1 tribbles pseudokinase 1 2 2
MIRT573483 IQSEC3 IQ motif and Sec7 domain 3 2 2
MIRT573656 HES6 hes family bHLH transcription factor 6 2 2
MIRT574343 ZBTB37 zinc finger and BTB domain containing 37 2 2
MIRT576494 Slc35e2 solute carrier family 35, member E2 2 4
MIRT608033 UBLCP1 ubiquitin like domain containing CTD phosphatase 1 2 2
MIRT611326 NANOS1 nanos C2HC-type zinc finger 1 2 2
MIRT613660 KIAA1210 KIAA1210 2 2
MIRT615638 ATF6 activating transcription factor 6 2 2
MIRT618573 RRAD RRAD, Ras related glycolysis inhibitor and calcium channel regulator 2 2
MIRT618865 MBL2 mannose binding lectin 2 2 2
MIRT618962 MRPS16 mitochondrial ribosomal protein S16 2 2
MIRT619172 SLC16A4 solute carrier family 16 member 4 2 2
MIRT620298 AQP6 aquaporin 6 2 2
MIRT620683 RFTN2 raftlin family member 2 2 2
MIRT621637 UBXN2B UBX domain protein 2B 2 2
MIRT621993 STK4 serine/threonine kinase 4 2 2
MIRT622421 NUDT19 nudix hydrolase 19 2 2
MIRT622804 PGAM5 PGAM family member 5, mitochondrial serine/threonine protein phosphatase 2 4
MIRT624786 AGAP9 ArfGAP with GTPase domain, ankyrin repeat and PH domain 9 2 2
MIRT624968 ZNF665 zinc finger protein 665 2 4
MIRT625479 SMAD9 SMAD family member 9 2 2
MIRT626594 ACAA2 acetyl-CoA acyltransferase 2 2 4
MIRT626708 TRIM65 tripartite motif containing 65 2 2
MIRT626975 LINC00598 long intergenic non-protein coding RNA 598 2 2
MIRT627489 STRIP2 striatin interacting protein 2 2 2
MIRT628505 ZNF878 zinc finger protein 878 2 2
MIRT628533 ZNF701 zinc finger protein 701 2 2
MIRT628591 TMEM251 transmembrane protein 251 2 2
MIRT628818 SLC25A34 solute carrier family 25 member 34 2 2
MIRT628896 IGSF6 immunoglobulin superfamily member 6 2 2
MIRT628958 UBE2D4 ubiquitin conjugating enzyme E2 D4 (putative) 2 2
MIRT629005 OSBPL10 oxysterol binding protein like 10 2 2
MIRT629059 KIF1C kinesin family member 1C 2 2
MIRT629192 PAPOLA poly(A) polymerase alpha 2 2
MIRT629346 TMPRSS11BNL TMPRSS11B N-terminal like, pseudogene 2 2
MIRT629447 WIZ widely interspaced zinc finger motifs 2 2
MIRT629696 XKR4 XK related 4 2 2
MIRT629737 SCD5 stearoyl-CoA desaturase 5 2 2
MIRT629896 SPATA5 spermatogenesis associated 5 2 2
MIRT629953 GLP2R glucagon like peptide 2 receptor 2 2
MIRT630023 MTL5 testis expressed metallothionein like protein 2 2
MIRT630181 TLN1 talin 1 2 2
MIRT630325 PAQR5 progestin and adipoQ receptor family member 5 2 2
MIRT630389 MYH9 myosin heavy chain 9 2 4
MIRT630695 EXTL3 exostosin like glycosyltransferase 3 2 2
MIRT631054 LINC00346 long intergenic non-protein coding RNA 346 2 2
MIRT631130 SYNJ2 synaptojanin 2 2 2
MIRT631374 COL4A3BP collagen type IV alpha 3 binding protein 2 2
MIRT631557 TRAF3IP2 TRAF3 interacting protein 2 2 2
MIRT631615 PCDHB11 protocadherin beta 11 2 2
MIRT631935 CDKAL1 CDK5 regulatory subunit associated protein 1 like 1 2 4
MIRT632109 SSR1 signal sequence receptor subunit 1 2 2
MIRT632168 CCL22 C-C motif chemokine ligand 22 2 2
MIRT632445 SGTB small glutamine rich tetratricopeptide repeat containing beta 2 2
MIRT632652 NAV1 neuron navigator 1 2 2
MIRT632688 MTMR10 myotubularin related protein 10 2 2
MIRT632828 IGF1 insulin like growth factor 1 2 2
MIRT632905 FRRS1 ferric chelate reductase 1 2 2
MIRT633027 DNAL1 dynein axonemal light chain 1 2 2
MIRT633379 FBXW8 F-box and WD repeat domain containing 8 2 2
MIRT633440 KLLN killin, p53-regulated DNA replication inhibitor 2 2
MIRT633726 BPNT1 3'(2'), 5'-bisphosphate nucleotidase 1 2 2
MIRT633832 WHAMM WAS protein homolog associated with actin, golgi membranes and microtubules 2 2
MIRT633862 ATP6V1A ATPase H+ transporting V1 subunit A 2 2
MIRT634042 NUP155 nucleoporin 155 2 2
MIRT634266 TIAL1 TIA1 cytotoxic granule associated RNA binding protein like 1 2 2
MIRT634374 RAP2B RAP2B, member of RAS oncogene family 2 2
MIRT634439 PDE7A phosphodiesterase 7A 2 2
MIRT634573 LRIG2 leucine rich repeats and immunoglobulin like domains 2 2 2
MIRT634620 TOR1AIP2 torsin 1A interacting protein 2 2 2
MIRT634693 DSEL dermatan sulfate epimerase-like 2 2
MIRT634768 CD3D CD3d molecule 2 2
MIRT635024 WWTR1 WW domain containing transcription regulator 1 2 2
MIRT635384 NHLRC2 NHL repeat containing 2 2 2
MIRT635577 TTC9C tetratricopeptide repeat domain 9C 2 2
MIRT635793 DNAJC10 DnaJ heat shock protein family (Hsp40) member C10 2 2
MIRT635837 ZNF264 zinc finger protein 264 2 2
MIRT636043 ZSCAN29 zinc finger and SCAN domain containing 29 2 4
MIRT636070 ZNF280C zinc finger protein 280C 2 2
MIRT636697 ARSK arylsulfatase family member K 2 2
MIRT637438 ZNF324B zinc finger protein 324B 2 2
MIRT637582 PLD6 phospholipase D family member 6 2 2
MIRT637672 PPM1D protein phosphatase, Mg2+/Mn2+ dependent 1D 2 2
MIRT637887 SLC19A3 solute carrier family 19 member 3 2 4
MIRT638353 RBMS2 RNA binding motif single stranded interacting protein 2 2 4
MIRT638597 HINT1 histidine triad nucleotide binding protein 1 2 2
MIRT638821 CRTAP cartilage associated protein 2 2
MIRT638871 CEP97 centrosomal protein 97 2 4
MIRT639660 PPEF2 protein phosphatase with EF-hand domain 2 2 4
MIRT640200 TIMM50 translocase of inner mitochondrial membrane 50 2 2
MIRT641592 TNS4 tensin 4 2 2
MIRT644993 POLR2J3 RNA polymerase II subunit J3 2 2
MIRT645059 UQCRQ ubiquinol-cytochrome c reductase complex III subunit VII 2 2
MIRT646948 UPK3BL uroplakin 3B like 1 2 2
MIRT647306 RPH3AL rabphilin 3A like (without C2 domains) 2 2
MIRT648300 SNRPD1 small nuclear ribonucleoprotein D1 polypeptide 2 4
MIRT649043 SLC1A2 solute carrier family 1 member 2 2 2
MIRT649884 SLFN12L schlafen family member 12 like 2 2
MIRT650196 DOCK7 dedicator of cytokinesis 7 2 2
MIRT654789 PRICKLE1 prickle planar cell polarity protein 1 2 2
MIRT655667 NUP43 nucleoporin 43 2 2
MIRT655925 NDUFA4P1 NDUFA4, mitochondrial complex associated pseudogene 1 2 2
MIRT656433 MARCH6 membrane associated ring-CH-type finger 6 2 2
MIRT657713 GPC4 glypican 4 2 2
MIRT659302 CSTF1 cleavage stimulation factor subunit 1 2 2
MIRT659844 CAPZB capping actin protein of muscle Z-line beta subunit 2 2
MIRT660660 ANKFY1 ankyrin repeat and FYVE domain containing 1 2 2
MIRT661308 CPM carboxypeptidase M 2 2
MIRT661473 CHMP1B charged multivesicular body protein 1B 2 2
MIRT661906 EBNA1BP2 EBNA1 binding protein 2 2 2
MIRT662064 ZNF284 zinc finger protein 284 2 2
MIRT662491 ANGPT4 angiopoietin 4 2 2
MIRT662657 LRRC47 leucine rich repeat containing 47 2 2
MIRT662804 MSRB2 methionine sulfoxide reductase B2 2 2
MIRT663164 FGFR1OP FGFR1 oncogene partner 2 2
MIRT663376 ZNF770 zinc finger protein 770 2 4
MIRT663418 ZNF607 zinc finger protein 607 2 2
MIRT663990 WDR75 WD repeat domain 75 2 2
MIRT664157 APOBEC3F apolipoprotein B mRNA editing enzyme catalytic subunit 3F 2 4
MIRT664489 POLR3K RNA polymerase III subunit K 2 2
MIRT665058 CCDC77 coiled-coil domain containing 77 2 2
MIRT665080 CRIPT CXXC repeat containing interactor of PDZ3 domain 2 2
MIRT665420 WDR55 WD repeat domain 55 2 2
MIRT665716 TMTC1 transmembrane and tetratricopeptide repeat containing 1 2 2
MIRT665923 TBC1D19 TBC1 domain family member 19 2 4
MIRT666239 SLC38A7 solute carrier family 38 member 7 2 4
MIRT666840 PPTC7 PTC7 protein phosphatase homolog 2 2
MIRT667378 MOB1B MOB kinase activator 1B 2 2
MIRT667573 LONRF2 LON peptidase N-terminal domain and ring finger 2 2 2
MIRT667894 ING1 inhibitor of growth family member 1 2 2
MIRT667977 HECTD3 HECT domain E3 ubiquitin protein ligase 3 2 2
MIRT668197 GCNT4 glucosaminyl (N-acetyl) transferase 4, core 2 2 2
MIRT668279 FOSL2 FOS like 2, AP-1 transcription factor subunit 2 2
MIRT668386 FAT3 FAT atypical cadherin 3 2 2
MIRT668444 FAM208A family with sequence similarity 208 member A 2 2
MIRT668998 CHORDC1 cysteine and histidine rich domain containing 1 2 2
MIRT669180 CCNF cyclin F 2 2
MIRT669444 ATL3 atlastin GTPase 3 2 2
MIRT669661 ACAP2 ArfGAP with coiled-coil, ankyrin repeat and PH domains 2 2 2
MIRT669890 KIAA0754 KIAA0754 2 4
MIRT669973 SSR3 signal sequence receptor subunit 3 2 2
MIRT670153 SLC29A4 solute carrier family 29 member 4 2 2
MIRT670240 TRIM13 tripartite motif containing 13 2 2
MIRT670274 CBY3 chibby family member 3 2 2
MIRT670358 ULBP3 UL16 binding protein 3 2 4
MIRT670627 BVES blood vessel epicardial substance 2 2
MIRT670731 HOOK3 hook microtubule tethering protein 3 2 2
MIRT670770 TRIM66 tripartite motif containing 66 2 2
MIRT670913 DESI1 desumoylating isopeptidase 1 2 2
MIRT671216 CLSTN1 calsyntenin 1 2 2
MIRT671398 ERCC6L2 ERCC excision repair 6 like 2 2 2
MIRT671427 TOX4 TOX high mobility group box family member 4 2 2
MIRT671654 TRUB2 TruB pseudouridine synthase family member 2 2 4
MIRT671702 PMPCA peptidase, mitochondrial processing alpha subunit 2 2
MIRT672136 PLEKHH1 pleckstrin homology, MyTH4 and FERM domain containing H1 2 2
MIRT672395 SLC10A6 solute carrier family 10 member 6 2 2
MIRT672508 GGCX gamma-glutamyl carboxylase 2 2
MIRT672572 RNF24 ring finger protein 24 2 2
MIRT672789 PPM1L protein phosphatase, Mg2+/Mn2+ dependent 1L 2 2
MIRT673019 RBBP4 RB binding protein 4, chromatin remodeling factor 2 2
MIRT673190 C10orf76 chromosome 10 open reading frame 76 2 2
MIRT673372 ZNF124 zinc finger protein 124 2 2
MIRT673495 MCF2L2 MCF.2 cell line derived transforming sequence-like 2 2 6
MIRT673852 CAPN7 calpain 7 2 2
MIRT673929 ZNF500 zinc finger protein 500 2 2
MIRT673986 MMAB methylmalonic aciduria (cobalamin deficiency) cblB type 2 2
MIRT674076 PLEKHA1 pleckstrin homology domain containing A1 2 2
MIRT674123 RPL7L1 ribosomal protein L7 like 1 2 2
MIRT674297 THAP5 THAP domain containing 5 2 2
MIRT674370 POLR3D RNA polymerase III subunit D 2 2
MIRT674641 NKRF NFKB repressing factor 2 2
MIRT674665 PLCE1 phospholipase C epsilon 1 2 2
MIRT674725 ZNF451 zinc finger protein 451 2 4
MIRT674779 NPR1 natriuretic peptide receptor 1 2 2
MIRT674889 RASSF9 Ras association domain family member 9 2 2
MIRT675017 SNX1 sorting nexin 1 2 2
MIRT675341 KLHL26 kelch like family member 26 2 2
MIRT675416 CLEC7A C-type lectin domain containing 7A 2 2
MIRT675497 HSD17B12 hydroxysteroid 17-beta dehydrogenase 12 2 2
MIRT675615 EHD2 EH domain containing 2 2 2
MIRT675735 AHR aryl hydrocarbon receptor 2 2
MIRT675857 ATP1B4 ATPase Na+/K+ transporting family member beta 4 2 2
MIRT675990 CRKL CRK like proto-oncogene, adaptor protein 2 2
MIRT676213 TMEM91 transmembrane protein 91 2 2
MIRT676406 MRO maestro 2 2
MIRT677299 CPSF2 cleavage and polyadenylation specific factor 2 2 2
MIRT677387 PCNP PEST proteolytic signal containing nuclear protein 2 2
MIRT677859 ABI2 abl interactor 2 2 2
MIRT677965 ITGB3 integrin subunit beta 3 2 2
MIRT678175 CRCP CGRP receptor component 2 2
MIRT678273 PTRH2 peptidyl-tRNA hydrolase 2 2 2
MIRT678665 SCUBE3 signal peptide, CUB domain and EGF like domain containing 3 2 2
MIRT679003 TTC39B tetratricopeptide repeat domain 39B 2 2
MIRT679053 RMDN1 regulator of microtubule dynamics 1 2 2
MIRT679461 RHOF ras homolog family member F, filopodia associated 2 2
MIRT679513 RAB36 RAB36, member RAS oncogene family 2 2
MIRT679914 ZKSCAN3 zinc finger with KRAB and SCAN domains 3 2 2
MIRT680029 OSBPL2 oxysterol binding protein like 2 2 4
MIRT680245 NDUFA7 NADH:ubiquinone oxidoreductase subunit A7 2 2
MIRT680279 AKIP1 A-kinase interacting protein 1 2 2
MIRT680499 PRIM2 DNA primase subunit 2 2 2
MIRT680586 ZNF573 zinc finger protein 573 2 2
MIRT680629 KIAA1456 KIAA1456 2 2
MIRT680819 ARL8B ADP ribosylation factor like GTPase 8B 2 2
MIRT680998 AAED1 AhpC/TSA antioxidant enzyme domain containing 1 2 2
MIRT681122 INTS7 integrator complex subunit 7 2 2
MIRT681161 IBA57 IBA57 homolog, iron-sulfur cluster assembly 2 2
MIRT681221 DUSP19 dual specificity phosphatase 19 2 2
MIRT681304 IKZF3 IKAROS family zinc finger 3 2 2
MIRT681341 BRI3BP BRI3 binding protein 2 2
MIRT681608 F2RL2 coagulation factor II thrombin receptor like 2 2 2
MIRT681779 EIF4A3 eukaryotic translation initiation factor 4A3 2 2
MIRT681892 SLC11A2 solute carrier family 11 member 2 2 2
MIRT682084 ITGA3 integrin subunit alpha 3 2 4
MIRT682139 SMS spermine synthase 2 2
MIRT682217 SAR1A secretion associated Ras related GTPase 1A 2 2
MIRT682367 PHACTR4 phosphatase and actin regulator 4 2 2
MIRT682535 EXOSC2 exosome component 2 2 2
MIRT682618 COX6B1 cytochrome c oxidase subunit 6B1 2 2
MIRT683643 ZNF695 zinc finger protein 695 2 2
MIRT684008 FOLR1 folate receptor 1 2 2
MIRT684442 MFSD4 major facilitator superfamily domain containing 4A 2 2
MIRT684855 ZNF749 zinc finger protein 749 2 2
MIRT684956 MINOS1 mitochondrial inner membrane organizing system 1 2 2
MIRT685044 GEMIN4 gem nuclear organelle associated protein 4 2 2
MIRT685095 DTD2 D-tyrosyl-tRNA deacylase 2 (putative) 2 2
MIRT685382 TNFRSF13C TNF receptor superfamily member 13C 2 2
MIRT685456 CACNG8 calcium voltage-gated channel auxiliary subunit gamma 8 2 2
MIRT685810 SLC27A1 solute carrier family 27 member 1 2 2
MIRT685913 MOCS3 molybdenum cofactor synthesis 3 2 2
MIRT686665 TMEM120B transmembrane protein 120B 2 2
MIRT686955 SFT2D2 SFT2 domain containing 2 2 2
MIRT687118 QPCTL glutaminyl-peptide cyclotransferase like 2 2
MIRT687739 KIAA1328 KIAA1328 2 2
MIRT688063 GLUL glutamate-ammonia ligase 2 2
MIRT688191 FNIP1 folliculin interacting protein 1 2 2
MIRT688769 CDH7 cadherin 7 2 2
MIRT688979 ATP6AP1 ATPase H+ transporting accessory protein 1 2 2
MIRT689572 NUDT7 nudix hydrolase 7 2 2
MIRT689683 TMPRSS12 transmembrane protease, serine 12 2 2
MIRT689930 MANSC1 MANSC domain containing 1 2 2
MIRT690089 PNMA2 paraneoplastic Ma antigen 2 2 2
MIRT690190 C5orf45 MRN complex interacting protein 2 2
MIRT690246 CAMLG calcium modulating ligand 2 2
MIRT690411 FAM71F2 family with sequence similarity 71 member F2 2 2
MIRT690840 DSN1 DSN1 homolog, MIS12 kinetochore complex component 2 2
MIRT690889 FUT2 fucosyltransferase 2 2 2
MIRT691107 ADIPOQ adiponectin, C1Q and collagen domain containing 2 2
MIRT691229 DFNB59 pejvakin 2 2
MIRT691300 ZNF681 zinc finger protein 681 2 2
MIRT691366 GP5 glycoprotein V platelet 2 2
MIRT691797 WARS tryptophanyl-tRNA synthetase 2 2
MIRT692142 CEP104 centrosomal protein 104 2 2
MIRT692572 NCMAP non-compact myelin associated protein 2 2
MIRT692649 ZMYM1 zinc finger MYM-type containing 1 2 2
MIRT692744 NDUFS5 NADH:ubiquinone oxidoreductase subunit S5 2 2
MIRT693092 SCNM1 sodium channel modifier 1 2 2
MIRT693296 SYTL3 synaptotagmin like 3 2 2
MIRT693392 ZNF460 zinc finger protein 460 2 2
MIRT693530 ZNF708 zinc finger protein 708 2 2
MIRT693562 PIGR polymeric immunoglobulin receptor 2 2
MIRT694492 AGBL5 ATP/GTP binding protein like 5 2 2
MIRT694722 LLGL1 LLGL1, scribble cell polarity complex component 2 2
MIRT694866 ZNF417 zinc finger protein 417 2 2
MIRT695070 ZNF17 zinc finger protein 17 2 2
MIRT695451 COX18 COX18, cytochrome c oxidase assembly factor 2 2
MIRT695724 ZNF117 zinc finger protein 117 2 2
MIRT695898 MED16 mediator complex subunit 16 2 2
MIRT696244 UGGT1 UDP-glucose glycoprotein glucosyltransferase 1 2 2
MIRT696259 TACO1 translational activator of cytochrome c oxidase I 2 2
MIRT696512 C3 complement C3 2 2
MIRT696560 TTC21B tetratricopeptide repeat domain 21B 2 2
MIRT696643 AGXT2 alanine--glyoxylate aminotransferase 2 2 2
MIRT696791 DHODH dihydroorotate dehydrogenase (quinone) 2 2
MIRT696819 PLLP plasmolipin 2 2
MIRT697088 GPKOW G-patch domain and KOW motifs 2 2
MIRT697153 INMT indolethylamine N-methyltransferase 2 2
MIRT697202 ZYG11A zyg-11 family member A, cell cycle regulator 2 2
MIRT697322 ZNF641 zinc finger protein 641 2 2
MIRT697578 YME1L1 YME1 like 1 ATPase 2 2
MIRT697619 WSB1 WD repeat and SOCS box containing 1 2 2
MIRT698619 TES testin LIM domain protein 2 2
MIRT698804 STK38 serine/threonine kinase 38 2 2
MIRT698949 SPAST spastin 2 2
MIRT699083 SNRPD3 small nuclear ribonucleoprotein D3 polypeptide 2 2
MIRT699430 SLC1A5 solute carrier family 1 member 5 2 2
MIRT699550 SIT1 signaling threshold regulating transmembrane adaptor 1 2 2
MIRT700324 RAB4A RAB4A, member RAS oncogene family 2 2
MIRT700360 RAB33B RAB33B, member RAS oncogene family 2 2
MIRT700462 PURB purine rich element binding protein B 2 2
MIRT701677 MYADM myeloid associated differentiation marker 2 2
MIRT701757 MSL2 MSL complex subunit 2 2 2
MIRT701977 MIER3 MIER family member 3 2 2
MIRT703178 GPBP1 GC-rich promoter binding protein 1 2 2
MIRT703203 GOLGA3 golgin A3 2 2
MIRT703359 GAPVD1 GTPase activating protein and VPS9 domains 1 2 2
MIRT703425 FYTTD1 forty-two-three domain containing 1 2 2
MIRT703484 FNDC3B fibronectin type III domain containing 3B 2 2
MIRT703590 FBXO45 F-box protein 45 2 2
MIRT703806 EVI5 ecotropic viral integration site 5 2 2
MIRT703915 EPG5 ectopic P-granules autophagy protein 5 homolog 2 2
MIRT704234 DHDDS dehydrodolichyl diphosphate synthase subunit 2 2
MIRT704646 CLCC1 chloride channel CLIC like 1 2 2
MIRT705151 C11orf58 chromosome 11 open reading frame 58 2 2
MIRT705480 ASXL2 additional sex combs like 2, transcriptional regulator 2 2
MIRT705530 ARL10 ADP ribosylation factor like GTPase 10 2 2
MIRT705661 ANKRD40 ankyrin repeat domain 40 2 2
MIRT706144 ZNF674 zinc finger protein 674 2 2
MIRT706473 SNX27 sorting nexin family member 27 2 2
MIRT708254 PGPEP1 pyroglutamyl-peptidase I 2 2
MIRT708838 SCAND3 zinc finger BED-type containing 9 1 1
MIRT710437 BTNL3 butyrophilin like 3 2 2
MIRT711325 DPYSL5 dihydropyrimidinase like 5 2 2
MIRT716151 RBM48 RNA binding motif protein 48 2 2
MIRT717402 ZCCHC24 zinc finger CCHC-type containing 24 2 2
MIRT720866 ADCY5 adenylate cyclase 5 2 2
MIRT722226 ZNF503 zinc finger protein 503 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-1273h-5p Paclitaxel 36314 NSC125973 approved sensitive High Ovarian Cancer cell line (SKOV3)
hsa-miR-1273h-5p Tripterygium wilfordii Hook F resistant tissue
hsa-miR-1273h-5p Cisplatin 5460033 NSC119875 approved sensitive cell line (MGC-803)

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