pre-miRNA Information
pre-miRNA hsa-mir-1273h   
Genomic Coordinates chr16: 24203116 - 24203231
Description Homo sapiens miR-1273h stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-1273h-5p
Sequence 33| CUGGGAGGUCAAGGCUGCAGU |53
Evidence Experimental
Experiments Illumina
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1028034199 14 dbSNP
rs542383563 18 dbSNP
Putative Targets

miRNA Expression profile
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol SGTB   
Synonyms SGT2
Description small glutamine rich tetratricopeptide repeat containing beta
Transcript NM_019072   
Expression
Putative miRNA Targets on SGTB
3'UTR of SGTB
(miRNA target sites are highlighted)
>SGTB|NM_019072|3'UTR
   1 TTTAACCAGGGGCTCAAGCCCAAGATACAAATGGTTTATGGCTATGAATGAAGTATTTGTTGTAGATAGTACCCCCTCCC
  81 TCCTTCAAAAAACCAAACACCATATCTGATGTGTGAAAATAATGGAGGAAAACCTCTTGTGTATATTCTTAAAGAATAAA
 161 TCTGTTTAGACAATAGGTTTATCACAAACAAACTCAAAACATAACATGACTCCTTTTGAAATGATCACTAGCCATGTTAC
 241 GTGCCAATATAGCACTGGGATAAGGTTCCATTTTCAAACTTCTATCATATTTGTATATTAGACTTAATAGCAAAGCATAT
 321 TTATTGAACTCTAGTAGGGCTATTTGTTGGTAAGCTCTTTAGCTCCAATTTCCCTTAAGCAAAGTTTTTTGAGAAGGGAA
 401 ATGACCCAAAGGAAAGGTTTCCTATGCTGGTTGAGAAGAAGTGTACTTGCCACTGAGCAGTATGTCAGGAAAGAAGGAAT
 481 ATTATCTAGGTTTAGCTTTGATAAGTGCTATTAGTAATGAATATATAACATGGGAACCAATGTTATCTTTAATGTTGCTT
 561 GTTCTGGTGAACAGAGAATCTTAAGAGCTGTTAGAAAGTAGCACTTGATGCAAGGGATGTTTTGAAAAGAAAAAATTGGT
 641 AATGCGAATGTATAGAAAGTAAAGGTAGGATGCTCAGGTTTTCTGCATAGTTCTTAACTAATCTTGTCTGCAGTTTGGTA
 721 TTGATAATATTAGCATGGCCACTTATGCTAAATACACAATAAGATACATTTAGAAATCCTTAATGTACTGGTTAGGTCAG
 801 TGGTACAACTGTTTGACTTAATTATCACAATTTCCCCAATGGTAACCTTACCTTGGAAACTATCAAATATAAATATACTT
 881 TAACTAAGCCAGTGACCTGGTCCTAAGTTAAGGATTTTCTAAATGGTATTTAATTGTGTGCCCATAAACACTGATTTTTT
 961 TTAAAAAGAAAACTTAGTAATTATTTGATGGATAACAAAAAGCATCTATCACTAACATTGCTTGTTCATGTAATCTTCTG
1041 TGATAATTTGGCTTGGCATGCCAGTCTTATAATTAACATAATTTAAATTTGATGCAATTTAAATATAACAGGAGACTTAA
1121 AATATTTTATTATAAATTAGATGCCATATTAGTTAGTGGAGAAAAGGGGCATTAGGTATTAATTGCATGGGTCTAACTAC
1201 ATTGATGATGAGAGTTTAATTCCAACTAGAGTATATTTTTTGTTTATTAATAATGAAATTGGTGCTGACATGTAATGACT
1281 TCACAAGTTTTACGAGGGAAAACTGAAAAAGGAAGTAATATAAATTTTGTGGGGTTTTTTTGAGATGGAGTCTTACTCTT
1361 TTGCCAGGCTAGAGTGGTGTTGCAATGTCAGCTCACTGCAACCTCCACCTCCTGGATTCAAGTGATTCTCGAGCCTTAAG
1441 CTCCCAAGTAGCTGGGATTACGGGCGCCCACCACCACGCCCAGCTAATTTTTTTTTTTTTTTTCTTGAGATGGAGTCTCT
1521 CTCTGTCGCCAGGCTGGAGTGCAGTGGCGCAATCGCGGCTCACTGCAACCTCTGCCTCCCGGGTTCAAGTGATTCTCCTG
1601 CCTCAGCCTCCTGAGTAGCTGGGATTACAGGCACGTGTCACCATGCCCAGCTAATTTTTGTATTTTTAGTAGAGACGGGG
1681 TTTCACCATGTTTGCCAGGATTGTCTCAATCTCTTGACCTCGTGATCCGCCTGCCTTGGCCTCCCAAATGCTGGGATTAC
1761 AGGCGTGAGCCACCGTGCCTGGCCGCTAATTTTTGTTTTTAATGGAGAGAGTTCCACCGTATCGGCCAGGCTGGTCTCGA
1841 ACTCCTGACCTCAAGTGATCTGCCCATCTTGGCCCCTCAAAGTGCTGGGATTAGAGGTGTGAGCCACTGTGCCTGGCCAG
1921 GAAGTAATATACAATTAAATGAGTAATAATGCAGATGATTAGGCCTTATAGAACCCTTATCAAAAGACTAATTGGCCGGG
2001 CGCTGTGGCTCATGCCTGTAATCCCAGCACTTTGGGAGGCCAAGGCAGGGGGGATCACCTGAGGTCAGGAGTTTGAGACC
2081 AGCCTGGCCAACATGGTGAAACCCACCTCTACTGAAAATACAAAAATTAGCCTGGCTTGGTGGCGGGCACCCGTAGTCCC
2161 AGCTACTTGGGAGGCTGAAGCATGAGAATTGCTCGAACCTGAGAGGCAGAGGTTGCAGTGAGCCAAGATTGCGCCACTGC
2241 ACTCCAGCCTGGGTGACAGAGCAAGACTCCATTTCAAAAAAAAAAAAAAAAAGAAAAAGAGACTAAGAGACTAATTATTT
2321 TGTATCTTGAAGTTTAAAATCCAACTTTTCTCTTTCTCCTTTGTGACATTAGAACAGTAGTTCTATAACTTCATTGTAAG
2401 AATCACCTGGATAATTCATTAAAGATGCAGATTCAGGGCCACGTGTTCAATTCTGATACAGTAGGTCCTGTAATAAGGCC
2481 TAGGAATGGCCATTTTTAAACAGTACACTAGGTGGTTTTGATACAGATCCAAGGACTCTAATTTAGAGGAACACTAGGTT
2561 AGAGGTTTCTCAGACCTGCAAACACCTAAGCACCTGGGCCAAACAAAGCTACAACGAAGATCTGTATGAAGATATATAGT
2641 TCTGCAGAATTTAAAAAGAGCACAATTTAAGTCTTCGGCCCTCAGAAGTTAAATTCATATTCCATCTAAGCCAACTTTGA
2721 TTTTCATTAAGTTAGAATGAACTCCTAGTATTCCAGTATTACACAGAACGAAGTACTACTACTAACACATAGAAGTCATT
2801 ACTGTGATATAAAAAGCAAAATAGATCCTTAATTAAAAATTAGTCACTCATATTCAGTGTTGAATAAGAAGTTAAAGTTT
2881 CTAGCATAACTATCTTGAGTGCATTAAAAATGCTTTTAGAGCAATAAGATAAGCTTCTAGCTGACTGCCTAGAAAAACAG
2961 AAGATACAAATTCAGTGTCAGAAATGAAAGGGAATACACTACAGACACTATAGTTATTAAAAGGCTAACTAGAAAACACC
3041 ATGACCAACTCAAGGATTGTATATTTAACAACTTAGATGAAACAGATTCCCTATAGGATACAAACTAGAAAGCTCACTGT
3121 AGAAACAGATAACCTAAACAGAACCATATTTATTAAGGAAATTGAGTTTGTGGTTAAGTTAAAAACCTTCCAGTAAAGAA
3201 AACTACAGGCCCAGATAACTTCCGTGATGAATTTTACCAAACACTTAAGGGAGAAATAATATCAATTCTAAACAATCTCT
3281 TCCAGGAAACAGAAGAGGAGGAAATACTTCCCAACTCATTTTATTTGACCAGTATTACCCAGACAAAGATACTATAAGAA
3361 AAAAAACTTTAAAACAATGTCTTCATGTGCTAACATCTGTAGTTAAATTAGCCATTCTTTTTACATGAAATAATGGGAAT
3441 TGGTATATTTCTTCCATTTCATTTTTCTATTTCTTTGCTAATATACCACCTGTAACAAATTCAATCTAGATGCTATCTGT
3521 CCACTTGCCTACATTTCCATTCTATTCAAGCCATTTTTGCTCTTCAAGTACCTTGATCACTTTGGAATCATAGCATTGCA
3601 AGCTATTTCAAAAAAAGTTGCGTGGTTGGATTGTGCTAGCTACTTTTAAATTTATAAAAAATGCCCCATATATTTTCTTG
3681 CTTGTCTGGGAAATATAGTTGCTATCTAACTAGAAAAATAAGAGGGCATTATTAAAGTAACTCTTTAAGCATCGTACTAA
3761 ATGTTTGACTTCCATTAACCATATTTCTTGTAGTAGCTGTAGCTATTATGATACTGTGTAAAACAGAACAGGTTCTATAT
3841 ATGCAAATGACATTTTCATTTAATGTACCAAATTGTGTATCTAACTTTTATAATATAGGTTAAACAGATCCTTTCTAAGA
3921 TGGCATTATTTAATCTTTACTTAAAACTATGAAAAATATGTGTAAGTTATTGTTTATAAACAGAAGAGACTATAATTAAA
4001 ATATAGAGCAGATTCCAAGTGACCATCATTTTACTTTTTAGATTTAAAACAGAATGAAACAGAAGATTTAGTCATAAGAA
4081 GATGCTTGAAAAACAATCCAAGTATCCAATGCAGTGGCTATAAAATATTATTTCATCATTTAATCTTAATCATTTTGAAA
4161 CAAAGACAGACTTCAATTTTACACTGCTTGCACTTTATTTTGTACAGACATTTCATTAATTATTACTCAATTTTGAGGTG
4241 CAAACCTTCTGAATATAGCTTTCATTTTGGACCAAACAATTTGTTATGGCAATAAATAATGATGCATTGAAAAACCAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' ugacGUCGGAACUGGAGGGUc 5'
              | ||||||:||||||| 
Target 5' ccgcCTGCCTTGGCCTCCCAa 3'
1727 - 1747 173.00 -26.90
2
miRNA  3' ugACGUCGGAACUGGAGGGUc 5'
            |||| |||  :||||||: 
Target 5' acTGCAACCTCTGCCTCCCGg 3'
1562 - 1582 151.00 -28.70
3
miRNA  3' ugacgUCGGAACUGGAGGGUc 5'
               |||||| | |||||| 
Target 5' tctcgAGCCTTAAGCTCCCAa 3'
1427 - 1447 140.00 -19.00
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN30110558 13 COSMIC
COSN30675426 14 COSMIC
COSN31526726 14 COSMIC
COSN31592213 130 COSMIC
COSN30111601 131 COSMIC
COSN31525769 154 COSMIC
COSN31565012 310 COSMIC
COSN30174621 403 COSMIC
COSN30158223 495 COSMIC
COSN31516468 508 COSMIC
COSN26644604 542 COSMIC
COSN7950848 566 COSMIC
COSN6925218 637 COSMIC
COSN21460536 850 COSMIC
COSN20101333 1034 COSMIC
COSN24036647 1035 COSMIC
COSN29849372 1488 COSMIC
COSN9454915 1540 COSMIC
COSN20547719 1580 COSMIC
COSN27163650 2106 COSMIC
COSN21303935 2317 COSMIC
COSN27512929 2373 COSMIC
COSN17763162 2417 COSMIC
COSN23658574 2462 COSMIC
COSN17181606 2546 COSMIC
COSN20101323 2600 COSMIC
COSN21599433 2645 COSMIC
COSN5609296 2740 COSMIC
COSN14924201 2934 COSMIC
COSN20101322 2988 COSMIC
COSN9454914 3113 COSMIC
COSN20323364 3273 COSMIC
rs72764483 3257 GWAS
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs761456172 9 dbSNP
rs768762520 10 dbSNP
rs749323549 15 dbSNP
rs1403240140 16 dbSNP
rs1421076073 22 dbSNP
rs753667478 28 dbSNP
rs187447334 30 dbSNP
rs1388811364 32 dbSNP
rs746316019 36 dbSNP
rs781711460 45 dbSNP
rs1252744264 46 dbSNP
rs757650130 51 dbSNP
rs990053939 52 dbSNP
rs1280022823 65 dbSNP
rs543263447 66 dbSNP
rs143891942 70 dbSNP
rs1338263008 79 dbSNP
rs1212906958 80 dbSNP
rs10070534 85 dbSNP
rs10055562 86 dbSNP
rs1028912672 93 dbSNP
rs953314081 93 dbSNP
rs1040252905 94 dbSNP
rs943072811 95 dbSNP
rs1290113276 102 dbSNP
rs1490286153 113 dbSNP
rs1208112045 133 dbSNP
rs1265988501 137 dbSNP
rs1474683634 139 dbSNP
rs554513980 141 dbSNP
rs910311399 142 dbSNP
rs1413863458 145 dbSNP
rs979628710 146 dbSNP
rs1549192 173 dbSNP
rs913584752 174 dbSNP
rs775328138 176 dbSNP
rs578185078 177 dbSNP
rs1343398497 178 dbSNP
rs1429897071 181 dbSNP
rs1269725086 190 dbSNP
rs1372671456 194 dbSNP
rs1248526552 195 dbSNP
rs1313189106 206 dbSNP
rs1358920194 209 dbSNP
rs1325995345 211 dbSNP
rs1288548003 216 dbSNP
rs1433631615 226 dbSNP
rs183576587 240 dbSNP
rs541463077 241 dbSNP
rs1473499030 242 dbSNP
rs969838993 247 dbSNP
rs1017017908 250 dbSNP
rs61514403 260 dbSNP
rs191396506 261 dbSNP
rs1025676029 269 dbSNP
rs1172124466 274 dbSNP
rs993393221 282 dbSNP
rs1395858915 284 dbSNP
rs188172774 286 dbSNP
rs945807404 293 dbSNP
rs2292152 295 dbSNP
rs35663374 300 dbSNP
rs989774480 311 dbSNP
rs27394 316 dbSNP
rs761913804 321 dbSNP
rs1382347146 334 dbSNP
rs1206876243 344 dbSNP
rs921814345 347 dbSNP
rs751861063 350 dbSNP
rs1279381430 351 dbSNP
rs556173433 358 dbSNP
rs140136058 360 dbSNP
rs1349611472 361 dbSNP
rs966251400 364 dbSNP
rs1043467892 365 dbSNP
rs1201266556 367 dbSNP
rs565015088 379 dbSNP
rs1014787334 410 dbSNP
rs1457970673 413 dbSNP
rs1180106638 414 dbSNP
rs1004243490 416 dbSNP
rs552690495 417 dbSNP
rs946479689 420 dbSNP
rs951507152 422 dbSNP
rs1427208531 442 dbSNP
rs1226230926 443 dbSNP
rs1468129366 454 dbSNP
rs1174416991 456 dbSNP
rs1027031110 466 dbSNP
rs995435287 484 dbSNP
rs894490965 494 dbSNP
rs150655678 501 dbSNP
rs748816270 507 dbSNP
rs1052063615 513 dbSNP
rs1275773896 529 dbSNP
rs1326333864 530 dbSNP
rs1383303042 533 dbSNP
rs1222194742 536 dbSNP
rs1375307525 537 dbSNP
rs183293307 540 dbSNP
rs1437034145 549 dbSNP
rs928221758 552 dbSNP
rs1196959038 554 dbSNP
rs981029840 558 dbSNP
rs1436814654 559 dbSNP
rs868653814 561 dbSNP
rs1248208568 569 dbSNP
rs866884742 574 dbSNP
rs1198597508 576 dbSNP
rs1460635753 580 dbSNP
rs1424169966 584 dbSNP
rs907352191 599 dbSNP
rs1041943318 607 dbSNP
rs1394648962 609 dbSNP
rs1409577763 614 dbSNP
rs1193941204 618 dbSNP
rs1347761094 622 dbSNP
rs1403707740 624 dbSNP
rs1429052552 625 dbSNP
rs1283205135 626 dbSNP
rs910069725 636 dbSNP
rs1229003312 645 dbSNP
rs964515691 645 dbSNP
rs778222362 646 dbSNP
rs562971956 648 dbSNP
rs1338391262 650 dbSNP
rs1486566357 653 dbSNP
rs914289762 658 dbSNP
rs1194897898 674 dbSNP
rs543102844 676 dbSNP
rs1025623722 689 dbSNP
rs1054219091 696 dbSNP
rs529397322 705 dbSNP
rs189562736 706 dbSNP
rs141904301 709 dbSNP
rs1227448328 720 dbSNP
rs965914128 722 dbSNP
rs148122192 736 dbSNP
rs1195473647 738 dbSNP
rs1371387056 747 dbSNP
rs1475240645 750 dbSNP
rs748337951 759 dbSNP
rs1219772892 764 dbSNP
rs888933883 769 dbSNP
rs1423139753 771 dbSNP
rs1417130556 773 dbSNP
rs1043969300 777 dbSNP
rs1356555182 783 dbSNP
rs558134668 789 dbSNP
rs149300517 794 dbSNP
rs983212133 799 dbSNP
rs544029872 801 dbSNP
rs1281744843 802 dbSNP
rs1325345762 803 dbSNP
rs1244799506 805 dbSNP
rs1026999940 825 dbSNP
rs1457517464 828 dbSNP
rs1415760364 830 dbSNP
rs995569015 830 dbSNP
rs1052010667 834 dbSNP
rs958939857 837 dbSNP
rs1486837408 841 dbSNP
rs13189159 856 dbSNP
rs1259818188 858 dbSNP
rs185132812 863 dbSNP
rs1045277277 881 dbSNP
rs907412730 884 dbSNP
rs1387335196 888 dbSNP
rs1180746794 890 dbSNP
rs1442964280 892 dbSNP
rs1163387875 896 dbSNP
rs13171336 905 dbSNP
rs910029703 907 dbSNP
rs984711284 923 dbSNP
rs951464198 927 dbSNP
rs27138 936 dbSNP
rs553963534 940 dbSNP
rs879793644 943 dbSNP
rs753525699 949 dbSNP
rs1338082677 953 dbSNP
rs533711018 962 dbSNP
rs552529994 963 dbSNP
rs747733259 967 dbSNP
rs879038217 968 dbSNP
rs965356358 973 dbSNP
rs1054186096 976 dbSNP
rs1318497364 976 dbSNP
rs1018308599 992 dbSNP
rs931777026 994 dbSNP
rs1440398209 996 dbSNP
rs1337885971 1002 dbSNP
rs1329869854 1008 dbSNP
rs867768748 1012 dbSNP
rs571537622 1020 dbSNP
rs1245011764 1024 dbSNP
rs1460187824 1034 dbSNP
rs398064871 1040 dbSNP
rs79796616 1040 dbSNP
rs181785739 1053 dbSNP
rs531745911 1070 dbSNP
rs1157314136 1073 dbSNP
rs1363760168 1078 dbSNP
rs1403698204 1081 dbSNP
rs1022094063 1082 dbSNP
rs72764486 1095 dbSNP
rs549394114 1101 dbSNP
rs1157915438 1106 dbSNP
rs1331612637 1106 dbSNP
rs1468471054 1115 dbSNP
rs983347565 1117 dbSNP
rs930456603 1125 dbSNP
rs1331648918 1126 dbSNP
rs1030701962 1128 dbSNP
rs920453063 1158 dbSNP
rs1265139707 1159 dbSNP
rs1003277332 1169 dbSNP
rs1252133511 1170 dbSNP
rs1481717974 1170 dbSNP
rs958852671 1171 dbSNP
rs1467712428 1174 dbSNP
rs529435912 1179 dbSNP
rs906190939 1190 dbSNP
rs1250631754 1191 dbSNP
rs1427728331 1193 dbSNP
rs560368675 1203 dbSNP
rs948303764 1225 dbSNP
rs1170468737 1232 dbSNP
rs888705302 1233 dbSNP
rs143047953 1235 dbSNP
rs930127468 1240 dbSNP
rs1284247775 1251 dbSNP
rs918785133 1257 dbSNP
rs139023151 1267 dbSNP
rs1406766056 1271 dbSNP
rs74833761 1276 dbSNP
rs1280479459 1278 dbSNP
rs1233887709 1285 dbSNP
rs911194496 1286 dbSNP
rs544465298 1293 dbSNP
rs1309540560 1294 dbSNP
rs1441811455 1303 dbSNP
rs985872216 1307 dbSNP
rs1490617896 1310 dbSNP
rs1344686823 1320 dbSNP
rs996322986 1329 dbSNP
rs953281599 1334 dbSNP
rs190991419 1339 dbSNP
rs944362098 1347 dbSNP
rs886126297 1350 dbSNP
rs796212246 1365 dbSNP
rs1426429329 1377 dbSNP
rs1169303535 1381 dbSNP
rs147012505 1392 dbSNP
rs1426342616 1403 dbSNP
rs1301021681 1405 dbSNP
rs1047621464 1408 dbSNP
rs1453424226 1410 dbSNP
rs1431362820 1411 dbSNP
rs1289582799 1413 dbSNP
rs1392809094 1415 dbSNP
rs551308606 1417 dbSNP
rs1030815200 1420 dbSNP
rs1295140450 1422 dbSNP
rs1003223183 1424 dbSNP
rs533441528 1430 dbSNP
rs1023268575 1431 dbSNP
rs920421648 1432 dbSNP
rs1490343566 1435 dbSNP
rs1217114750 1440 dbSNP
rs1243410261 1447 dbSNP
rs1484609088 1450 dbSNP
rs1185382190 1457 dbSNP
rs1012330537 1461 dbSNP
rs888160669 1462 dbSNP
rs1049106454 1463 dbSNP
rs1384368444 1465 dbSNP
rs930233744 1466 dbSNP
rs1320214592 1469 dbSNP
rs897301878 1471 dbSNP
rs1041244535 1474 dbSNP
rs687315 1477 dbSNP
rs911299309 1478 dbSNP
rs1383846390 1480 dbSNP
rs981951229 1487 dbSNP
rs1356086408 1500 dbSNP
rs1346153763 1501 dbSNP
rs1305990598 1503 dbSNP
rs1014519207 1504 dbSNP
rs1214505218 1504 dbSNP
rs1261692375 1504 dbSNP
rs1315614119 1504 dbSNP
rs34419961 1504 dbSNP
rs397827661 1504 dbSNP
rs554591874 1504 dbSNP
rs1235264241 1507 dbSNP
rs1160031615 1508 dbSNP
rs1405736879 1513 dbSNP
rs1361424991 1517 dbSNP
rs1268445436 1519 dbSNP
rs141804313 1525 dbSNP
rs35403984 1525 dbSNP
rs748619660 1525 dbSNP
rs779837346 1525 dbSNP
rs985600233 1527 dbSNP
rs947365701 1528 dbSNP
rs1281606371 1536 dbSNP
rs553555721 1537 dbSNP
rs1371871871 1539 dbSNP
rs185795545 1541 dbSNP
rs1228306923 1543 dbSNP
rs1298594776 1544 dbSNP
rs914608967 1548 dbSNP
rs1201175460 1549 dbSNP
rs1262148186 1550 dbSNP
rs1438003636 1551 dbSNP
rs1183767337 1552 dbSNP
rs1230939139 1552 dbSNP
rs1469613879 1554 dbSNP
rs1373389479 1555 dbSNP
rs533992543 1556 dbSNP
rs1471004828 1557 dbSNP
rs1174305135 1561 dbSNP
rs751624390 1563 dbSNP
rs1401816776 1568 dbSNP
rs537540426 1572 dbSNP
rs1030764159 1573 dbSNP
rs981920680 1577 dbSNP
rs1331366238 1578 dbSNP
rs371211766 1580 dbSNP
rs1353118430 1581 dbSNP
rs971368577 1585 dbSNP
rs1284503452 1586 dbSNP
rs970414718 1592 dbSNP
rs576540897 1597 dbSNP
rs1221191036 1603 dbSNP
rs1023804866 1604 dbSNP
rs1012035175 1612 dbSNP
rs952461443 1613 dbSNP
rs1197164339 1615 dbSNP
rs1026667652 1618 dbSNP
rs1482607280 1621 dbSNP
rs538189211 1624 dbSNP
rs989053559 1628 dbSNP
rs1197424527 1634 dbSNP
rs1377127588 1635 dbSNP
rs1187856548 1637 dbSNP
rs1484921061 1641 dbSNP
rs1475903660 1643 dbSNP
rs1169878869 1644 dbSNP
rs897417536 1651 dbSNP
rs1041194170 1658 dbSNP
rs1282889692 1674 dbSNP
rs1211896495 1676 dbSNP
rs1368045501 1677 dbSNP
rs1008397047 1686 dbSNP
rs889994355 1699 dbSNP
rs1050259024 1707 dbSNP
rs957646427 1711 dbSNP
rs947518475 1718 dbSNP
rs868050613 1721 dbSNP
rs764237287 1722 dbSNP
rs1340959354 1724 dbSNP
rs1307097363 1728 dbSNP
rs367654884 1729 dbSNP
rs1216341750 1742 dbSNP
rs1053063602 1745 dbSNP
rs1262262423 1748 dbSNP
rs529350559 1757 dbSNP
rs996328045 1760 dbSNP
rs965261849 1764 dbSNP
rs1449061148 1765 dbSNP
rs562069145 1774 dbSNP
rs982036785 1775 dbSNP
rs1009088651 1783 dbSNP
rs970961582 1784 dbSNP
rs1386238560 1788 dbSNP
rs1383437116 1795 dbSNP
rs1414059774 1807 dbSNP
rs916438295 1809 dbSNP
rs1047420176 1812 dbSNP
rs994710596 1815 dbSNP
rs1314433886 1818 dbSNP
rs899048977 1819 dbSNP
rs796784 1823 dbSNP
rs1236424517 1830 dbSNP
rs1167865414 1831 dbSNP
rs952507056 1839 dbSNP
rs937835163 1841 dbSNP
rs1027030269 1856 dbSNP
rs1423690288 1873 dbSNP
rs993835767 1879 dbSNP
rs1045802279 1880 dbSNP
rs1464657781 1897 dbSNP
rs961070790 1907 dbSNP
rs1184432459 1911 dbSNP
rs569151658 1912 dbSNP
rs1019870170 1913 dbSNP
rs1245121693 1928 dbSNP
rs1008512963 1934 dbSNP
rs889934063 1959 dbSNP
rs1422447857 1970 dbSNP
rs1187219082 1974 dbSNP
rs1164896728 1975 dbSNP
rs1049943861 1977 dbSNP
rs1474486718 1988 dbSNP
rs1455777655 1990 dbSNP
rs568490767 1992 dbSNP
rs893229390 1997 dbSNP
rs1480435522 1998 dbSNP
rs531930159 2001 dbSNP
rs957363635 2002 dbSNP
rs1307406746 2018 dbSNP
rs926199682 2029 dbSNP
rs1236771105 2031 dbSNP
rs529270772 2037 dbSNP
rs189686 2045 dbSNP
rs1328582951 2048 dbSNP
rs1232624106 2053 dbSNP
rs964890402 2054 dbSNP
rs1265256311 2055 dbSNP
rs1332536929 2066 dbSNP
rs1019561768 2074 dbSNP
rs566978795 2079 dbSNP
rs1251673135 2088 dbSNP
rs934660832 2098 dbSNP
rs1372340656 2103 dbSNP
rs928676185 2108 dbSNP
rs1421467390 2113 dbSNP
rs1180655703 2124 dbSNP
rs1008640993 2125 dbSNP
rs1046287640 2139 dbSNP
rs1177921451 2141 dbSNP
rs1357112836 2144 dbSNP
rs181880215 2145 dbSNP
rs916368291 2152 dbSNP
rs1398356607 2153 dbSNP
rs1287660211 2158 dbSNP
rs1346014620 2160 dbSNP
rs1224234399 2163 dbSNP
rs533584393 2167 dbSNP
rs1285236587 2182 dbSNP
rs1310715638 2192 dbSNP
rs546109600 2194 dbSNP
rs994433546 2195 dbSNP
rs1460345570 2198 dbSNP
rs1420577747 2199 dbSNP
rs371614502 2200 dbSNP
rs1251771101 2202 dbSNP
rs1166087841 2205 dbSNP
rs550761362 2208 dbSNP
rs1055032540 2215 dbSNP
rs1422434474 2216 dbSNP
rs952527962 2223 dbSNP
rs1418924785 2225 dbSNP
rs1406194028 2229 dbSNP
rs919671747 2232 dbSNP
rs145755476 2233 dbSNP
rs1458346444 2234 dbSNP
rs972510027 2238 dbSNP
rs1366156744 2240 dbSNP
rs1002559189 2241 dbSNP
rs961018111 2248 dbSNP
rs1296590597 2254 dbSNP
rs1046698415 2258 dbSNP
rs1309445857 2259 dbSNP
rs945191804 2266 dbSNP
rs1252483280 2270 dbSNP
rs913283243 2272 dbSNP
rs1469868897 2273 dbSNP
rs1055507065 2275 dbSNP
rs1222178303 2276 dbSNP
rs1316177791 2277 dbSNP
rs1245417024 2279 dbSNP
rs1487879442 2281 dbSNP
rs1186541106 2286 dbSNP
rs868608820 2287 dbSNP
rs748567241 2288 dbSNP
rs200039472 2289 dbSNP
rs954333754 2289 dbSNP
rs1241914561 2290 dbSNP
rs1053208996 2293 dbSNP
rs1248545066 2293 dbSNP
rs1289493619 2293 dbSNP
rs1349182464 2293 dbSNP
rs1367685439 2293 dbSNP
rs1426246083 2293 dbSNP
rs201934842 2293 dbSNP
rs76278023 2293 dbSNP
rs868296748 2294 dbSNP
rs1377101898 2297 dbSNP
rs1215934983 2298 dbSNP
rs1302077169 2299 dbSNP
rs1463312929 2299 dbSNP
rs1187545032 2301 dbSNP
rs531140005 2304 dbSNP
rs925971589 2309 dbSNP
rs1396023173 2310 dbSNP
rs1413035152 2319 dbSNP
rs1011750821 2322 dbSNP
rs893335136 2326 dbSNP
rs368041212 2347 dbSNP
rs1401198938 2350 dbSNP
rs965367192 2359 dbSNP
rs562008247 2363 dbSNP
rs998926787 2367 dbSNP
rs1455643668 2369 dbSNP
rs987561842 2371 dbSNP
rs1383734548 2383 dbSNP
rs950893960 2387 dbSNP
rs907186633 2388 dbSNP
rs1045719302 2389 dbSNP
rs1294668007 2392 dbSNP
rs1453646102 2393 dbSNP
rs1289752642 2396 dbSNP
rs973150567 2406 dbSNP
rs963062593 2428 dbSNP
rs1263406526 2446 dbSNP
rs1462352574 2455 dbSNP
rs1207811020 2456 dbSNP
rs1236664226 2459 dbSNP
rs949292181 2460 dbSNP
rs895063501 2472 dbSNP
rs766271807 2487 dbSNP
rs1343825219 2495 dbSNP
rs1055490007 2508 dbSNP
rs546659160 2510 dbSNP
rs931152302 2511 dbSNP
rs919785923 2512 dbSNP
rs972457853 2515 dbSNP
rs1394770668 2516 dbSNP
rs542234401 2519 dbSNP
rs1407167203 2529 dbSNP
rs1416362739 2531 dbSNP
rs1009372118 2539 dbSNP
rs776775330 2552 dbSNP
rs1210385755 2553 dbSNP
rs768869175 2559 dbSNP
rs1053177499 2564 dbSNP
rs1290776752 2565 dbSNP
rs954402659 2571 dbSNP
rs573509368 2575 dbSNP
rs990842737 2583 dbSNP
rs904517333 2589 dbSNP
rs957524962 2592 dbSNP
rs1031825856 2593 dbSNP
rs1217109659 2594 dbSNP
rs1277390978 2597 dbSNP
rs1335849343 2600 dbSNP
rs55695090 2600 dbSNP
rs368200402 2603 dbSNP
rs199966710 2604 dbSNP
rs386688665 2605 dbSNP
rs33916729 2608 dbSNP
rs564729624 2608 dbSNP
rs796956625 2608 dbSNP
rs1482671711 2609 dbSNP
rs907302681 2615 dbSNP
rs987700386 2616 dbSNP
rs929457225 2622 dbSNP
rs1171041450 2634 dbSNP
rs1024218854 2635 dbSNP
rs1012915787 2639 dbSNP
rs777243291 2639 dbSNP
rs1018787596 2641 dbSNP
rs377616311 2660 dbSNP
rs1033436572 2663 dbSNP
rs1303298457 2665 dbSNP
rs559064110 2672 dbSNP
rs77942292 2676 dbSNP
rs898308540 2677 dbSNP
rs1230390228 2678 dbSNP
rs1360407722 2681 dbSNP
rs1009512808 2688 dbSNP
rs1223131121 2690 dbSNP
rs374160268 2697 dbSNP
rs1375191424 2698 dbSNP
rs1036878636 2699 dbSNP
rs16894208 2702 dbSNP
rs1246384474 2711 dbSNP
rs540622187 2720 dbSNP
rs1475850596 2726 dbSNP
rs538022727 2732 dbSNP
rs575626506 2747 dbSNP
rs1429433799 2750 dbSNP
rs1164782701 2756 dbSNP
rs558281501 2757 dbSNP
rs986996701 2769 dbSNP
rs138600357 2770 dbSNP
rs566714293 2771 dbSNP
rs1436815649 2772 dbSNP
rs1295217624 2780 dbSNP
rs1259641402 2781 dbSNP
rs920960126 2786 dbSNP
rs943337215 2790 dbSNP
rs1354128459 2793 dbSNP
rs1208187332 2823 dbSNP
rs890484674 2839 dbSNP
rs189829635 2844 dbSNP
rs1465566189 2857 dbSNP
rs1051951588 2874 dbSNP
rs1246351981 2877 dbSNP
rs1449261366 2877 dbSNP
rs990399876 2881 dbSNP
rs919422377 2885 dbSNP
rs1208307463 2886 dbSNP
rs1162193407 2888 dbSNP
rs1346635572 2888 dbSNP
rs1458299130 2892 dbSNP
rs1318143016 2895 dbSNP
rs957629663 2899 dbSNP
rs973501685 2906 dbSNP
rs1453153918 2918 dbSNP
rs1314579612 2919 dbSNP
rs539596583 2934 dbSNP
rs1338687855 2945 dbSNP
rs942218074 2947 dbSNP
rs1279997512 2959 dbSNP
rs977560358 2967 dbSNP
rs570905499 2976 dbSNP
rs550775501 2985 dbSNP
rs3081173 2989 dbSNP
rs34113614 2990 dbSNP
rs202014761 2991 dbSNP
rs2067306 2991 dbSNP
rs1201439123 2999 dbSNP
rs1225985115 3001 dbSNP
rs926335791 3002 dbSNP
rs971575128 3003 dbSNP
rs533757482 3008 dbSNP
rs1355251511 3010 dbSNP
rs1473300366 3011 dbSNP
rs1311402500 3017 dbSNP
rs1387514474 3024 dbSNP
rs756475297 3029 dbSNP
rs1304440185 3040 dbSNP
rs1013445696 3043 dbSNP
rs988051866 3054 dbSNP
rs749215027 3061 dbSNP
rs562045772 3068 dbSNP
rs1286511603 3071 dbSNP
rs1328818739 3078 dbSNP
rs1234234233 3086 dbSNP
rs1460586792 3112 dbSNP
rs1482490073 3147 dbSNP
rs1200189448 3162 dbSNP
rs1253209679 3172 dbSNP
rs1028087185 3173 dbSNP
rs1179460258 3177 dbSNP
rs1410577422 3179 dbSNP
rs1374832770 3183 dbSNP
rs374147575 3185 dbSNP
rs371274282 3187 dbSNP
rs184557585 3210 dbSNP
rs1375517924 3213 dbSNP
rs1442087166 3213 dbSNP
rs116117019 3218 dbSNP
rs1004047551 3219 dbSNP
rs1018086764 3223 dbSNP
rs1407909970 3224 dbSNP
rs1306332884 3231 dbSNP
rs1349956754 3233 dbSNP
rs1387368997 3239 dbSNP
rs1007670621 3241 dbSNP
rs72764483 3257 dbSNP
rs1310623666 3258 dbSNP
rs1233045743 3262 dbSNP
rs1275780376 3265 dbSNP
rs1345019520 3284 dbSNP
rs1050853710 3302 dbSNP
rs1443798919 3307 dbSNP
rs932418302 3313 dbSNP
rs920918034 3315 dbSNP
rs1488532851 3346 dbSNP
rs1256489893 3354 dbSNP
rs376068342 3365 dbSNP
rs1194846270 3367 dbSNP
rs1051754006 3371 dbSNP
rs1432215806 3378 dbSNP
rs150131304 3381 dbSNP
rs1479401594 3385 dbSNP
rs755918098 3386 dbSNP
rs540203555 3387 dbSNP
rs1054534932 3400 dbSNP
rs936215137 3411 dbSNP
rs1350351341 3412 dbSNP
rs1458503405 3417 dbSNP
rs1295331893 3423 dbSNP
rs1219816814 3433 dbSNP
rs752548445 3436 dbSNP
rs1365827256 3440 dbSNP
rs924861588 3445 dbSNP
rs1334700037 3465 dbSNP
rs977676456 3469 dbSNP
rs971524202 3472 dbSNP
rs917428047 3473 dbSNP
rs181399973 3474 dbSNP
rs749017689 3485 dbSNP
rs959055904 3486 dbSNP
rs1027622736 3490 dbSNP
rs942167926 3496 dbSNP
rs1223198356 3504 dbSNP
rs994843010 3508 dbSNP
rs1341440022 3513 dbSNP
rs1263157032 3514 dbSNP
rs866104476 3515 dbSNP
rs1328479126 3519 dbSNP
rs1447459510 3519 dbSNP
rs1187654309 3520 dbSNP
rs775395325 3534 dbSNP
rs1425470962 3560 dbSNP
rs1402571551 3561 dbSNP
rs1167088275 3562 dbSNP
rs1332076970 3574 dbSNP
rs1348208122 3591 dbSNP
rs1460931650 3600 dbSNP
rs1015514154 3603 dbSNP
rs564135853 3605 dbSNP
rs140821140 3606 dbSNP
rs1269952569 3614 dbSNP
rs1380607556 3617 dbSNP
rs754700641 3621 dbSNP
rs996573474 3622 dbSNP
rs1208757498 3633 dbSNP
rs1368809110 3648 dbSNP
rs1269665833 3649 dbSNP
rs1180676002 3650 dbSNP
rs1207933802 3650 dbSNP
rs1237832720 3655 dbSNP
rs1416898342 3659 dbSNP
rs1484073719 3661 dbSNP
rs1239475216 3662 dbSNP
rs1412913305 3662 dbSNP
rs899580978 3669 dbSNP
rs1054249357 3678 dbSNP
rs956368661 3685 dbSNP
rs935659269 3696 dbSNP
rs1455834837 3705 dbSNP
rs1318162706 3727 dbSNP
rs1360119484 3731 dbSNP
rs979392327 3732 dbSNP
rs964206066 3737 dbSNP
rs376947850 3745 dbSNP
rs555710039 3746 dbSNP
rs535425290 3749 dbSNP
rs573091635 3750 dbSNP
rs751219316 3754 dbSNP
rs566723274 3756 dbSNP
rs1278818170 3763 dbSNP
rs1443950051 3765 dbSNP
rs1207704596 3768 dbSNP
rs917395607 3773 dbSNP
rs1030378406 3784 dbSNP
rs1483327763 3790 dbSNP
rs993427964 3797 dbSNP
rs992075316 3805 dbSNP
rs537324476 3812 dbSNP
rs920674518 3814 dbSNP
rs973519467 3817 dbSNP
rs1006504016 3820 dbSNP
rs1321564411 3821 dbSNP
rs1375426884 3840 dbSNP
rs147875976 3840 dbSNP
rs962027303 3842 dbSNP
rs745675979 3852 dbSNP
rs1348098351 3866 dbSNP
rs917639089 3873 dbSNP
rs1014958212 3879 dbSNP
rs1346641508 3882 dbSNP
rs1381850415 3891 dbSNP
rs1279322115 3896 dbSNP
rs982674772 3912 dbSNP
rs1207219840 3917 dbSNP
rs955487779 3923 dbSNP
rs1052197123 3930 dbSNP
rs1181126920 3933 dbSNP
rs1247551865 3933 dbSNP
rs1479117858 3934 dbSNP
rs1250569963 3939 dbSNP
rs1394860501 3941 dbSNP
rs539807826 3945 dbSNP
rs762435242 3949 dbSNP
rs570631037 3954 dbSNP
rs1323616136 3956 dbSNP
rs1332518058 3959 dbSNP
rs1433844589 3968 dbSNP
rs1302158779 3976 dbSNP
rs924965702 3976 dbSNP
rs979749334 3988 dbSNP
rs1452649223 4001 dbSNP
rs1284010582 4004 dbSNP
rs942672861 4006 dbSNP
rs1203696809 4021 dbSNP
rs1290666932 4025 dbSNP
rs1453609366 4026 dbSNP
rs911131466 4027 dbSNP
rs1212068871 4030 dbSNP
rs1252553161 4035 dbSNP
rs1356279559 4041 dbSNP
rs1190872284 4051 dbSNP
rs997079180 4052 dbSNP
rs1287093932 4054 dbSNP
rs1233813131 4064 dbSNP
rs1368899953 4067 dbSNP
rs899696349 4076 dbSNP
rs1163398949 4080 dbSNP
rs986615578 4082 dbSNP
rs1403042778 4095 dbSNP
rs1032708324 4096 dbSNP
rs999925108 4098 dbSNP
rs1438530568 4102 dbSNP
rs1388870254 4109 dbSNP
rs1331555753 4119 dbSNP
rs902832675 4128 dbSNP
rs1317545786 4132 dbSNP
rs550612017 4145 dbSNP
rs576285515 4151 dbSNP
rs537255072 4153 dbSNP
rs1325846160 4155 dbSNP
rs1417707623 4161 dbSNP
rs1245424207 4165 dbSNP
rs545248734 4172 dbSNP
rs1030348617 4176 dbSNP
rs1231487335 4185 dbSNP
rs773754576 4192 dbSNP
rs1272830325 4194 dbSNP
rs972144416 4197 dbSNP
rs1211028520 4198 dbSNP
rs1260077686 4202 dbSNP
rs1362189793 4206 dbSNP
rs950296694 4209 dbSNP
rs1188872234 4212 dbSNP
rs1203060590 4214 dbSNP
rs1473959967 4219 dbSNP
rs896059013 4222 dbSNP
rs1433657472 4226 dbSNP
rs530626659 4230 dbSNP
rs372555825 4233 dbSNP
rs548758469 4238 dbSNP
rs920803389 4243 dbSNP
rs1318374866 4253 dbSNP
rs1383979928 4257 dbSNP
rs973468672 4259 dbSNP
rs528810648 4263 dbSNP
rs940775083 4269 dbSNP
rs557915959 4278 dbSNP
rs907849164 4279 dbSNP
rs1024316280 4280 dbSNP
rs987469929 4282 dbSNP
rs1192121635 4283 dbSNP
rs1013732735 4286 dbSNP
rs954770256 4288 dbSNP
rs1029983312 4293 dbSNP
rs975383572 4298 dbSNP
rs1230465922 4300 dbSNP
rs1259128297 4301 dbSNP
rs188177989 4307 dbSNP
rs1032824438 4314 dbSNP
rs1345913366 4318 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HEK293S
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in GSM1084044. RNA binding protein: AGO2. Condition:CLIP_noarsenite_rep3 HITS-CLIP data was present in GSM1084047. RNA binding protein: AGO2. Condition:CLIP_arsenite_rep4 HITS-CLIP data was present in GSM1084064. RNA binding protein: AGO2. Condition:CLIP_noemetine_AbnovaAb HITS-CLIP data was present in GSM1084065. RNA binding protein: AGO2. Condition:CLIP_emetine_AbnovaAb HITS-CLIP data was present in GSM1084068. RNA binding protein: AGO2. Condition:CLIP_noemetine_SigmaAb HITS-CLIP data was present in GSM1084073. RNA binding protein: AGO2. Condition:CLIP_hippuristanol_rep1_AbnovaAb ...

- Karginov FV; Hannon GJ, 2013, Genes & development.

Article - Karginov FV; Hannon GJ
- Genes & development, 2013
When adapting to environmental stress, cells attenuate and reprogram their translational output. In part, these altered translation profiles are established through changes in the interactions between RNA-binding proteins and mRNAs. The Argonaute 2 (Ago2)/microRNA (miRNA) machinery has been shown to participate in stress-induced translational up-regulation of a particular mRNA, CAT-1; however, a detailed, transcriptome-wide understanding of the involvement of Ago2 in the process has been lacking. Here, we profiled the overall changes in Ago2-mRNA interactions upon arsenite stress by cross-linking immunoprecipitation (CLIP) followed by high-throughput sequencing (CLIP-seq). Ago2 displayed a significant remodeling of its transcript occupancy, with the majority of 3' untranslated region (UTR) and coding sequence (CDS) sites exhibiting stronger interaction. Interestingly, target sites that were destined for release from Ago2 upon stress were depleted in miRNA complementarity signatures, suggesting an alternative mode of interaction. To compare the changes in Ago2-binding patterns across transcripts with changes in their translational states, we measured mRNA profiles on ribosome/polysome gradients by RNA sequencing (RNA-seq). Increased Ago2 occupancy correlated with stronger repression of translation for those mRNAs, as evidenced by a shift toward lighter gradient fractions upon stress, while release of Ago2 was associated with the limited number of transcripts that remained translated. Taken together, these data point to a role for Ago2 and the mammalian miRNAs in mediating the translational component of the stress response.
LinkOut: [PMID: 23824327]
CLIP-seq Support 1 for dataset GSM1084044
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_noarsenite_rep3
Location of target site ENST00000381007.4 | 3UTR | CAAAUGCUGGGAUUACAGGCGUGAGC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM1084047
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_arsenite_rep4
Location of target site ENST00000381007.4 | 3UTR | CAAAUGCUGGGAUUACAGGCGU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
CLIP-seq Support 3 for dataset GSM1084064
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_noemetine_AbnovaAb
Location of target site ENST00000381007.4 | 3UTR | CAAAUGCUGGGAUUACAGGC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
CLIP-seq Support 4 for dataset GSM1084065
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_emetine_AbnovaAb
Location of target site ENST00000381007.4 | 3UTR | CAAAUGCUGGGAUUACAGGC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
CLIP-seq Support 5 for dataset GSM1084068
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_noemetine_SigmaAb
Location of target site ENST00000381007.4 | 3UTR | CAAAUGCUGGGAUUAC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
CLIP-seq Support 6 for dataset GSM1084073
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_hippuristanol_rep1_AbnovaAb
Location of target site ENST00000381007.4 | 3UTR | CAAAUGCUGGGAUUACAGGCGU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
494 hsa-miR-1273h-5p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT074355 TNRC6A trinucleotide repeat containing 6A 2 2
MIRT100721 TJAP1 tight junction associated protein 1 2 2
MIRT115545 MAZ MYC associated zinc finger protein 2 2
MIRT124982 XIAP X-linked inhibitor of apoptosis 2 4
MIRT139911 BTF3L4 basic transcription factor 3 like 4 2 6
MIRT177183 ARL5B ADP ribosylation factor like GTPase 5B 2 4
MIRT187994 MBD6 methyl-CpG binding domain protein 6 2 2
MIRT207410 MAT2A methionine adenosyltransferase 2A 2 6
MIRT241928 DYRK2 dual specificity tyrosine phosphorylation regulated kinase 2 2 2
MIRT260110 KLHL21 kelch like family member 21 2 2
MIRT260358 XRCC6 X-ray repair cross complementing 6 2 6
MIRT266428 RPRD2 regulation of nuclear pre-mRNA domain containing 2 2 2
MIRT294663 ZNF548 zinc finger protein 548 2 2
MIRT351039 PLEKHB2 pleckstrin homology domain containing B2 2 2
MIRT379943 PRRG4 proline rich and Gla domain 4 2 2
MIRT398983 KAT7 lysine acetyltransferase 7 2 2
MIRT441465 BEST3 bestrophin 3 2 2
MIRT446750 ZNF491 zinc finger protein 491 2 2
MIRT449224 RAD51B RAD51 paralog B 2 2
MIRT450623 AQR aquarius intron-binding spliceosomal factor 2 2
MIRT451090 ZNF584 zinc finger protein 584 2 2
MIRT451558 CIAPIN1 cytokine induced apoptosis inhibitor 1 2 2
MIRT451736 CES3 carboxylesterase 3 2 2
MIRT452411 QDPR quinoid dihydropteridine reductase 2 2
MIRT452559 ZFP69B ZFP69 zinc finger protein B 2 2
MIRT452851 LAX1 lymphocyte transmembrane adaptor 1 2 2
MIRT452922 DISC1 disrupted in schizophrenia 1 2 2
MIRT453043 TANGO2 transport and golgi organization 2 homolog 2 4
MIRT453097 HOXC4 homeobox C4 2 2
MIRT453297 ZNF394 zinc finger protein 394 2 2
MIRT453593 ZNF557 zinc finger protein 557 2 2
MIRT453787 KBTBD12 kelch repeat and BTB domain containing 12 2 2
MIRT453987 CECR1 adenosine deaminase 2 2 2
MIRT454083 TMEM209 transmembrane protein 209 2 2
MIRT454652 FBXL18 F-box and leucine rich repeat protein 18 2 2
MIRT454753 PFKFB3 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3 2 2
MIRT455311 TTLL9 tubulin tyrosine ligase like 9 2 2
MIRT456468 SERAC1 serine active site containing 1 2 2
MIRT456554 TOMM20 translocase of outer mitochondrial membrane 20 2 2
MIRT456716 TMEM239 transmembrane protein 239 2 4
MIRT456796 SIGLEC14 sialic acid binding Ig like lectin 14 2 2
MIRT457487 SLC35F6 solute carrier family 35 member F6 2 2
MIRT457999 MRPL12 mitochondrial ribosomal protein L12 2 2
MIRT458130 TLCD2 TLC domain containing 2 2 2
MIRT459027 ZNF490 zinc finger protein 490 2 4
MIRT459119 FADS6 fatty acid desaturase 6 2 2
MIRT459315 HAVCR2 hepatitis A virus cellular receptor 2 2 2
MIRT459385 MPLKIP M-phase specific PLK1 interacting protein 2 2
MIRT459412 FAM83B family with sequence similarity 83 member B 2 2
MIRT459974 RFT1 RFT1 homolog 2 2
MIRT460480 FAM105A family with sequence similarity 105 member A 2 6
MIRT460586 FEM1A fem-1 homolog A 2 2
MIRT460920 NOA1 nitric oxide associated 1 2 4
MIRT461072 OPA3 OPA3, outer mitochondrial membrane lipid metabolism regulator 2 2
MIRT461590 DPH2 DPH2 homolog 2 2
MIRT461854 ZNF317 zinc finger protein 317 2 2
MIRT462176 ACADL acyl-CoA dehydrogenase, long chain 2 2
MIRT462446 GCDH glutaryl-CoA dehydrogenase 2 2
MIRT463854 WNT7B Wnt family member 7B 2 2
MIRT464310 UST uronyl 2-sulfotransferase 2 2
MIRT464815 UBE2B ubiquitin conjugating enzyme E2 B 2 2
MIRT465453 TOR2A torsin family 2 member A 2 2
MIRT466073 TMEM184C transmembrane protein 184C 2 2
MIRT466514 TBXA2R thromboxane A2 receptor 2 2
MIRT467072 SRRD SRR1 domain containing 2 2
MIRT469551 RARA retinoic acid receptor alpha 2 2
MIRT469741 RAB2B RAB2B, member RAS oncogene family 2 2
MIRT470759 PNPLA6 patatin like phospholipase domain containing 6 2 2
MIRT470875 PLXND1 plexin D1 2 2
MIRT470976 PITPNA phosphatidylinositol transfer protein alpha 2 2
MIRT471048 PIM3 Pim-3 proto-oncogene, serine/threonine kinase 2 2
MIRT471215 PHAX phosphorylated adaptor for RNA export 2 2
MIRT471246 PGM2L1 phosphoglucomutase 2 like 1 2 2
MIRT471286 PGAM4 phosphoglycerate mutase family member 4 2 2
MIRT471467 PDE7B phosphodiesterase 7B 2 2
MIRT473069 MORN4 MORN repeat containing 4 2 4
MIRT473989 LRRC20 leucine rich repeat containing 20 2 2
MIRT474518 KLHDC8A kelch domain containing 8A 2 2
MIRT474990 KANSL1 KAT8 regulatory NSL complex subunit 1 2 2
MIRT475547 HNRNPUL1 heterogeneous nuclear ribonucleoprotein U like 1 2 2
MIRT476350 GIGYF1 GRB10 interacting GYF protein 1 2 2
MIRT477298 EPHB2 EPH receptor B2 2 2
MIRT477933 DPM2 dolichyl-phosphate mannosyltransferase subunit 2, regulatory 2 2
MIRT478282 DDX19A DEAD-box helicase 19A 2 4
MIRT478472 CYP20A1 cytochrome P450 family 20 subfamily A member 1 2 2
MIRT478559 CTNND1 catenin delta 1 2 2
MIRT478618 CTDNEP1 CTD nuclear envelope phosphatase 1 2 2
MIRT478834 CRISPLD2 cysteine rich secretory protein LCCL domain containing 2 2 2
MIRT479007 COL5A1 collagen type V alpha 1 chain 2 2
MIRT479166 CLSPN claspin 2 2
MIRT482454 ADAR adenosine deaminase, RNA specific 2 4
MIRT483019 KHSRP KH-type splicing regulatory protein 2 4
MIRT483798 CYP2W1 cytochrome P450 family 2 subfamily W member 1 2 6
MIRT486087 SLC7A5 solute carrier family 7 member 5 2 4
MIRT486304 SIPA1 signal-induced proliferation-associated 1 2 2
MIRT486490 MYH11 myosin heavy chain 11 2 2
MIRT486881 TSPYL4 TSPY like 4 2 2
MIRT487125 NCOR2 nuclear receptor corepressor 2 2 2
MIRT487542 TM6SF2 transmembrane 6 superfamily member 2 2 4
MIRT487676 B3GALT5 beta-1,3-galactosyltransferase 5 2 4
MIRT489251 TTLL1 tubulin tyrosine ligase like 1 2 4
MIRT489276 RBM8A RNA binding motif protein 8A 2 8
MIRT489496 CRLF3 cytokine receptor like factor 3 2 4
MIRT489571 SSBP2 single stranded DNA binding protein 2 2 2
MIRT489694 SCAMP4 secretory carrier membrane protein 4 2 2
MIRT490166 TMEM63C transmembrane protein 63C 2 2
MIRT491199 MLLT1 MLLT1, super elongation complex subunit 2 4
MIRT491260 DHX40 DEAH-box helicase 40 2 2
MIRT491385 HAUS3 HAUS augmin like complex subunit 3 2 2
MIRT491548 YAE1D1 Yae1 domain containing 1 2 2
MIRT492722 PHF12 PHD finger protein 12 2 2
MIRT493866 FAM73B mitoguardin 2 2 4
MIRT494549 BAK1 BCL2 antagonist/killer 1 2 2
MIRT498586 KRT8 keratin 8 2 2
MIRT498722 SNTN sentan, cilia apical structure protein 2 6
MIRT499982 HIST1H2BD histone cluster 1 H2B family member d 2 4
MIRT503414 SLC25A45 solute carrier family 25 member 45 2 6
MIRT508491 FTO FTO, alpha-ketoglutarate dependent dioxygenase 2 2
MIRT508877 METTL14 methyltransferase like 14 2 2
MIRT509622 RRP7A ribosomal RNA processing 7 homolog A 2 4
MIRT510104 IRAK3 interleukin 1 receptor associated kinase 3 2 8
MIRT510139 PDGFRA platelet derived growth factor receptor alpha 2 4
MIRT510353 ZNF703 zinc finger protein 703 2 6
MIRT510620 TMEM167A transmembrane protein 167A 2 4
MIRT510786 SF3B3 splicing factor 3b subunit 3 2 6
MIRT511021 NRF1 nuclear respiratory factor 1 2 2
MIRT513925 GHITM growth hormone inducible transmembrane protein 2 2
MIRT514342 DNAH17 dynein axonemal heavy chain 17 2 4
MIRT515015 SUMF2 sulfatase modifying factor 2 2 2
MIRT515246 DUSP28 dual specificity phosphatase 28 2 2
MIRT516202 RPP30 ribonuclease P/MRP subunit p30 2 2
MIRT516435 ADAMTS4 ADAM metallopeptidase with thrombospondin type 1 motif 4 2 4
MIRT516666 ZNF860 zinc finger protein 860 2 4
MIRT518373 ZNF250 zinc finger protein 250 2 2
MIRT518930 LSG1 large 60S subunit nuclear export GTPase 1 2 2
MIRT519676 ZNF70 zinc finger protein 70 2 2
MIRT519902 ZFAND4 zinc finger AN1-type containing 4 2 4
MIRT519945 ZCCHC8 zinc finger CCHC-type containing 8 2 2
MIRT520321 UBXN2A UBX domain protein 2A 2 2
MIRT520606 TMEM41B transmembrane protein 41B 2 2
MIRT520663 TMEM11 transmembrane protein 11 2 2
MIRT520852 SUGT1 SGT1 homolog, MIS12 kinetochore complex assembly cochaperone 2 2
MIRT521443 RAD51 RAD51 recombinase 2 2
MIRT521671 PRKAR2A protein kinase cAMP-dependent type II regulatory subunit alpha 2 2
MIRT522281 NKAP NFKB activating protein 2 2
MIRT522333 NCKIPSD NCK interacting protein with SH3 domain 2 8
MIRT522535 MED28 mediator complex subunit 28 2 6
MIRT523478 GNG4 G protein subunit gamma 4 2 2
MIRT523672 FOPNL FGFR1OP N-terminal like 2 2
MIRT523715 FBXW2 F-box and WD repeat domain containing 2 2 4
MIRT523867 ESCO2 establishment of sister chromatid cohesion N-acetyltransferase 2 2 4
MIRT524043 DNAJC8 DnaJ heat shock protein family (Hsp40) member C8 2 2
MIRT524167 DFFA DNA fragmentation factor subunit alpha 2 2
MIRT524928 ALG10B ALG10B, alpha-1,2-glucosyltransferase 2 2
MIRT526825 PHC1 polyhomeotic homolog 1 2 2
MIRT531017 TDGF1P3 teratocarcinoma-derived growth factor 1 pseudogene 3 2 2
MIRT536085 MBOAT2 membrane bound O-acyltransferase domain containing 2 2 2
MIRT540681 BMP3 bone morphogenetic protein 3 2 2
MIRT541708 TMEM33 transmembrane protein 33 2 2
MIRT541755 KLF8 Kruppel like factor 8 2 2
MIRT541888 LY6G5B lymphocyte antigen 6 family member G5B 2 2
MIRT545714 SPTLC2 serine palmitoyltransferase long chain base subunit 2 2 2
MIRT559054 C19orf47 chromosome 19 open reading frame 47 2 4
MIRT561748 PLAGL2 PLAG1 like zinc finger 2 2 2
MIRT562365 ETV3 ETS variant 3 2 2
MIRT562821 GCFC2 GC-rich sequence DNA-binding factor 2 2 2
MIRT562900 DNAH10OS dynein axonemal heavy chain 10 opposite strand 2 2
MIRT564452 SLC35E2 solute carrier family 35 member E2 2 5
MIRT569111 ONECUT3 one cut homeobox 3 2 2
MIRT569224 SUSD1 sushi domain containing 1 2 2
MIRT570271 ARPC3 actin related protein 2/3 complex subunit 3 2 2
MIRT570498 TFIP11 tuftelin interacting protein 11 2 2
MIRT570844 GPRC5C G protein-coupled receptor class C group 5 member C 2 2
MIRT571311 TPCN2 two pore segment channel 2 2 2
MIRT572077 EXOC8 exocyst complex component 8 2 2
MIRT572116 DNAJC24 DnaJ heat shock protein family (Hsp40) member C24 2 2
MIRT573054 TRIB1 tribbles pseudokinase 1 2 2
MIRT573483 IQSEC3 IQ motif and Sec7 domain 3 2 2
MIRT573656 HES6 hes family bHLH transcription factor 6 2 2
MIRT574343 ZBTB37 zinc finger and BTB domain containing 37 2 2
MIRT576494 Slc35e2 solute carrier family 35, member E2 2 4
MIRT608033 UBLCP1 ubiquitin like domain containing CTD phosphatase 1 2 2
MIRT611326 NANOS1 nanos C2HC-type zinc finger 1 2 2
MIRT613660 KIAA1210 KIAA1210 2 2
MIRT615638 ATF6 activating transcription factor 6 2 2
MIRT618573 RRAD RRAD, Ras related glycolysis inhibitor and calcium channel regulator 2 2
MIRT618865 MBL2 mannose binding lectin 2 2 2
MIRT618962 MRPS16 mitochondrial ribosomal protein S16 2 2
MIRT619172 SLC16A4 solute carrier family 16 member 4 2 2
MIRT620298 AQP6 aquaporin 6 2 2
MIRT620683 RFTN2 raftlin family member 2 2 2
MIRT621637 UBXN2B UBX domain protein 2B 2 2
MIRT621993 STK4 serine/threonine kinase 4 2 2
MIRT622421 NUDT19 nudix hydrolase 19 2 2
MIRT622804 PGAM5 PGAM family member 5, mitochondrial serine/threonine protein phosphatase 2 4
MIRT624786 AGAP9 ArfGAP with GTPase domain, ankyrin repeat and PH domain 9 2 2
MIRT624968 ZNF665 zinc finger protein 665 2 4
MIRT625479 SMAD9 SMAD family member 9 2 2
MIRT626594 ACAA2 acetyl-CoA acyltransferase 2 2 4
MIRT626708 TRIM65 tripartite motif containing 65 2 2
MIRT626975 LINC00598 long intergenic non-protein coding RNA 598 2 2
MIRT627489 STRIP2 striatin interacting protein 2 2 2
MIRT628505 ZNF878 zinc finger protein 878 2 2
MIRT628533 ZNF701 zinc finger protein 701 2 2
MIRT628591 TMEM251 transmembrane protein 251 2 2
MIRT628818 SLC25A34 solute carrier family 25 member 34 2 2
MIRT628896 IGSF6 immunoglobulin superfamily member 6 2 2
MIRT628958 UBE2D4 ubiquitin conjugating enzyme E2 D4 (putative) 2 2
MIRT629005 OSBPL10 oxysterol binding protein like 10 2 2
MIRT629059 KIF1C kinesin family member 1C 2 2
MIRT629192 PAPOLA poly(A) polymerase alpha 2 2
MIRT629346 TMPRSS11BNL TMPRSS11B N-terminal like, pseudogene 2 2
MIRT629447 WIZ widely interspaced zinc finger motifs 2 2
MIRT629696 XKR4 XK related 4 2 2
MIRT629737 SCD5 stearoyl-CoA desaturase 5 2 2
MIRT629896 SPATA5 spermatogenesis associated 5 2 2
MIRT629953 GLP2R glucagon like peptide 2 receptor 2 2
MIRT630023 MTL5 testis expressed metallothionein like protein 2 2
MIRT630181 TLN1 talin 1 2 2
MIRT630325 PAQR5 progestin and adipoQ receptor family member 5 2 2
MIRT630389 MYH9 myosin heavy chain 9 2 4
MIRT630695 EXTL3 exostosin like glycosyltransferase 3 2 2
MIRT631054 LINC00346 long intergenic non-protein coding RNA 346 2 2
MIRT631130 SYNJ2 synaptojanin 2 2 2
MIRT631374 COL4A3BP collagen type IV alpha 3 binding protein 2 2
MIRT631557 TRAF3IP2 TRAF3 interacting protein 2 2 2
MIRT631615 PCDHB11 protocadherin beta 11 2 2
MIRT631935 CDKAL1 CDK5 regulatory subunit associated protein 1 like 1 2 4
MIRT632109 SSR1 signal sequence receptor subunit 1 2 2
MIRT632168 CCL22 C-C motif chemokine ligand 22 2 2
MIRT632445 SGTB small glutamine rich tetratricopeptide repeat containing beta 2 2
MIRT632652 NAV1 neuron navigator 1 2 2
MIRT632688 MTMR10 myotubularin related protein 10 2 2
MIRT632828 IGF1 insulin like growth factor 1 2 2
MIRT632905 FRRS1 ferric chelate reductase 1 2 2
MIRT633027 DNAL1 dynein axonemal light chain 1 2 2
MIRT633379 FBXW8 F-box and WD repeat domain containing 8 2 2
MIRT633440 KLLN killin, p53-regulated DNA replication inhibitor 2 2
MIRT633726 BPNT1 3'(2'), 5'-bisphosphate nucleotidase 1 2 2
MIRT633832 WHAMM WAS protein homolog associated with actin, golgi membranes and microtubules 2 2
MIRT633862 ATP6V1A ATPase H+ transporting V1 subunit A 2 2
MIRT634042 NUP155 nucleoporin 155 2 2
MIRT634266 TIAL1 TIA1 cytotoxic granule associated RNA binding protein like 1 2 2
MIRT634374 RAP2B RAP2B, member of RAS oncogene family 2 2
MIRT634439 PDE7A phosphodiesterase 7A 2 2
MIRT634573 LRIG2 leucine rich repeats and immunoglobulin like domains 2 2 2
MIRT634620 TOR1AIP2 torsin 1A interacting protein 2 2 2
MIRT634693 DSEL dermatan sulfate epimerase-like 2 2
MIRT634768 CD3D CD3d molecule 2 2
MIRT635024 WWTR1 WW domain containing transcription regulator 1 2 2
MIRT635384 NHLRC2 NHL repeat containing 2 2 2
MIRT635577 TTC9C tetratricopeptide repeat domain 9C 2 2
MIRT635793 DNAJC10 DnaJ heat shock protein family (Hsp40) member C10 2 2
MIRT635837 ZNF264 zinc finger protein 264 2 2
MIRT636043 ZSCAN29 zinc finger and SCAN domain containing 29 2 4
MIRT636070 ZNF280C zinc finger protein 280C 2 2
MIRT636697 ARSK arylsulfatase family member K 2 2
MIRT637438 ZNF324B zinc finger protein 324B 2 2
MIRT637582 PLD6 phospholipase D family member 6 2 2
MIRT637672 PPM1D protein phosphatase, Mg2+/Mn2+ dependent 1D 2 2
MIRT637887 SLC19A3 solute carrier family 19 member 3 2 4
MIRT638353 RBMS2 RNA binding motif single stranded interacting protein 2 2 4
MIRT638597 HINT1 histidine triad nucleotide binding protein 1 2 2
MIRT638821 CRTAP cartilage associated protein 2 2
MIRT638871 CEP97 centrosomal protein 97 2 4
MIRT639660 PPEF2 protein phosphatase with EF-hand domain 2 2 4
MIRT640200 TIMM50 translocase of inner mitochondrial membrane 50 2 2
MIRT641592 TNS4 tensin 4 2 2
MIRT644993 POLR2J3 RNA polymerase II subunit J3 2 2
MIRT645059 UQCRQ ubiquinol-cytochrome c reductase complex III subunit VII 2 2
MIRT646948 UPK3BL uroplakin 3B like 1 2 2
MIRT647306 RPH3AL rabphilin 3A like (without C2 domains) 2 2
MIRT648300 SNRPD1 small nuclear ribonucleoprotein D1 polypeptide 2 4
MIRT649043 SLC1A2 solute carrier family 1 member 2 2 2
MIRT649884 SLFN12L schlafen family member 12 like 2 2
MIRT650196 DOCK7 dedicator of cytokinesis 7 2 2
MIRT654789 PRICKLE1 prickle planar cell polarity protein 1 2 2
MIRT655667 NUP43 nucleoporin 43 2 2
MIRT655925 NDUFA4P1 NDUFA4, mitochondrial complex associated pseudogene 1 2 2
MIRT656433 MARCH6 membrane associated ring-CH-type finger 6 2 2
MIRT657713 GPC4 glypican 4 2 2
MIRT659302 CSTF1 cleavage stimulation factor subunit 1 2 2
MIRT659844 CAPZB capping actin protein of muscle Z-line beta subunit 2 2
MIRT660660 ANKFY1 ankyrin repeat and FYVE domain containing 1 2 2
MIRT661308 CPM carboxypeptidase M 2 2
MIRT661473 CHMP1B charged multivesicular body protein 1B 2 2
MIRT661906 EBNA1BP2 EBNA1 binding protein 2 2 2
MIRT662064 ZNF284 zinc finger protein 284 2 2
MIRT662491 ANGPT4 angiopoietin 4 2 2
MIRT662657 LRRC47 leucine rich repeat containing 47 2 2
MIRT662804 MSRB2 methionine sulfoxide reductase B2 2 2
MIRT663164 FGFR1OP FGFR1 oncogene partner 2 2
MIRT663376 ZNF770 zinc finger protein 770 2 4
MIRT663418 ZNF607 zinc finger protein 607 2 2
MIRT663990 WDR75 WD repeat domain 75 2 2
MIRT664157 APOBEC3F apolipoprotein B mRNA editing enzyme catalytic subunit 3F 2 4
MIRT664489 POLR3K RNA polymerase III subunit K 2 2
MIRT665058 CCDC77 coiled-coil domain containing 77 2 2
MIRT665080 CRIPT CXXC repeat containing interactor of PDZ3 domain 2 2
MIRT665420 WDR55 WD repeat domain 55 2 2
MIRT665716 TMTC1 transmembrane and tetratricopeptide repeat containing 1 2 2
MIRT665923 TBC1D19 TBC1 domain family member 19 2 4
MIRT666239 SLC38A7 solute carrier family 38 member 7 2 4
MIRT666840 PPTC7 PTC7 protein phosphatase homolog 2 2
MIRT667378 MOB1B MOB kinase activator 1B 2 2
MIRT667573 LONRF2 LON peptidase N-terminal domain and ring finger 2 2 2
MIRT667894 ING1 inhibitor of growth family member 1 2 2
MIRT667977 HECTD3 HECT domain E3 ubiquitin protein ligase 3 2 2
MIRT668197 GCNT4 glucosaminyl (N-acetyl) transferase 4, core 2 2 2
MIRT668279 FOSL2 FOS like 2, AP-1 transcription factor subunit 2 2
MIRT668386 FAT3 FAT atypical cadherin 3 2 2
MIRT668444 FAM208A family with sequence similarity 208 member A 2 2
MIRT668998 CHORDC1 cysteine and histidine rich domain containing 1 2 2
MIRT669180 CCNF cyclin F 2 2
MIRT669444 ATL3 atlastin GTPase 3 2 2
MIRT669661 ACAP2 ArfGAP with coiled-coil, ankyrin repeat and PH domains 2 2 2
MIRT669890 KIAA0754 KIAA0754 2 4
MIRT669973 SSR3 signal sequence receptor subunit 3 2 2
MIRT670153 SLC29A4 solute carrier family 29 member 4 2 2
MIRT670240 TRIM13 tripartite motif containing 13 2 2
MIRT670274 CBY3 chibby family member 3 2 2
MIRT670358 ULBP3 UL16 binding protein 3 2 4
MIRT670627 BVES blood vessel epicardial substance 2 2
MIRT670731 HOOK3 hook microtubule tethering protein 3 2 2
MIRT670770 TRIM66 tripartite motif containing 66 2 2
MIRT670913 DESI1 desumoylating isopeptidase 1 2 2
MIRT671216 CLSTN1 calsyntenin 1 2 2
MIRT671398 ERCC6L2 ERCC excision repair 6 like 2 2 2
MIRT671427 TOX4 TOX high mobility group box family member 4 2 2
MIRT671654 TRUB2 TruB pseudouridine synthase family member 2 2 4
MIRT671702 PMPCA peptidase, mitochondrial processing alpha subunit 2 2
MIRT672136 PLEKHH1 pleckstrin homology, MyTH4 and FERM domain containing H1 2 2
MIRT672395 SLC10A6 solute carrier family 10 member 6 2 2
MIRT672508 GGCX gamma-glutamyl carboxylase 2 2
MIRT672572 RNF24 ring finger protein 24 2 2
MIRT672789 PPM1L protein phosphatase, Mg2+/Mn2+ dependent 1L 2 2
MIRT673019 RBBP4 RB binding protein 4, chromatin remodeling factor 2 2
MIRT673190 C10orf76 chromosome 10 open reading frame 76 2 2
MIRT673372 ZNF124 zinc finger protein 124 2 2
MIRT673495 MCF2L2 MCF.2 cell line derived transforming sequence-like 2 2 6
MIRT673852 CAPN7 calpain 7 2 2
MIRT673929 ZNF500 zinc finger protein 500 2 2
MIRT673986 MMAB methylmalonic aciduria (cobalamin deficiency) cblB type 2 2
MIRT674076 PLEKHA1 pleckstrin homology domain containing A1 2 2
MIRT674123 RPL7L1 ribosomal protein L7 like 1 2 2
MIRT674297 THAP5 THAP domain containing 5 2 2
MIRT674370 POLR3D RNA polymerase III subunit D 2 2
MIRT674641 NKRF NFKB repressing factor 2 2
MIRT674665 PLCE1 phospholipase C epsilon 1 2 2
MIRT674725 ZNF451 zinc finger protein 451 2 4
MIRT674779 NPR1 natriuretic peptide receptor 1 2 2
MIRT674889 RASSF9 Ras association domain family member 9 2 2
MIRT675017 SNX1 sorting nexin 1 2 2
MIRT675341 KLHL26 kelch like family member 26 2 2
MIRT675416 CLEC7A C-type lectin domain containing 7A 2 2
MIRT675497 HSD17B12 hydroxysteroid 17-beta dehydrogenase 12 2 2
MIRT675615 EHD2 EH domain containing 2 2 2
MIRT675735 AHR aryl hydrocarbon receptor 2 2
MIRT675857 ATP1B4 ATPase Na+/K+ transporting family member beta 4 2 2
MIRT675990 CRKL CRK like proto-oncogene, adaptor protein 2 2
MIRT676213 TMEM91 transmembrane protein 91 2 2
MIRT676406 MRO maestro 2 2
MIRT677299 CPSF2 cleavage and polyadenylation specific factor 2 2 2
MIRT677387 PCNP PEST proteolytic signal containing nuclear protein 2 2
MIRT677859 ABI2 abl interactor 2 2 2
MIRT677965 ITGB3 integrin subunit beta 3 2 2
MIRT678175 CRCP CGRP receptor component 2 2
MIRT678273 PTRH2 peptidyl-tRNA hydrolase 2 2 2
MIRT678665 SCUBE3 signal peptide, CUB domain and EGF like domain containing 3 2 2
MIRT679003 TTC39B tetratricopeptide repeat domain 39B 2 2
MIRT679053 RMDN1 regulator of microtubule dynamics 1 2 2
MIRT679461 RHOF ras homolog family member F, filopodia associated 2 2
MIRT679513 RAB36 RAB36, member RAS oncogene family 2 2
MIRT679914 ZKSCAN3 zinc finger with KRAB and SCAN domains 3 2 2
MIRT680029 OSBPL2 oxysterol binding protein like 2 2 4
MIRT680245 NDUFA7 NADH:ubiquinone oxidoreductase subunit A7 2 2
MIRT680279 AKIP1 A-kinase interacting protein 1 2 2
MIRT680499 PRIM2 DNA primase subunit 2 2 2
MIRT680586 ZNF573 zinc finger protein 573 2 2
MIRT680629 KIAA1456 KIAA1456 2 2
MIRT680819 ARL8B ADP ribosylation factor like GTPase 8B 2 2
MIRT680998 AAED1 AhpC/TSA antioxidant enzyme domain containing 1 2 2
MIRT681122 INTS7 integrator complex subunit 7 2 2
MIRT681161 IBA57 IBA57 homolog, iron-sulfur cluster assembly 2 2
MIRT681221 DUSP19 dual specificity phosphatase 19 2 2
MIRT681304 IKZF3 IKAROS family zinc finger 3 2 2
MIRT681341 BRI3BP BRI3 binding protein 2 2
MIRT681608 F2RL2 coagulation factor II thrombin receptor like 2 2 2
MIRT681779 EIF4A3 eukaryotic translation initiation factor 4A3 2 2
MIRT681892 SLC11A2 solute carrier family 11 member 2 2 2
MIRT682084 ITGA3 integrin subunit alpha 3 2 4
MIRT682139 SMS spermine synthase 2 2
MIRT682217 SAR1A secretion associated Ras related GTPase 1A 2 2
MIRT682367 PHACTR4 phosphatase and actin regulator 4 2 2
MIRT682535 EXOSC2 exosome component 2 2 2
MIRT682618 COX6B1 cytochrome c oxidase subunit 6B1 2 2
MIRT683643 ZNF695 zinc finger protein 695 2 2
MIRT684008 FOLR1 folate receptor 1 2 2
MIRT684442 MFSD4 major facilitator superfamily domain containing 4A 2 2
MIRT684855 ZNF749 zinc finger protein 749 2 2
MIRT684956 MINOS1 mitochondrial inner membrane organizing system 1 2 2
MIRT685044 GEMIN4 gem nuclear organelle associated protein 4 2 2
MIRT685095 DTD2 D-tyrosyl-tRNA deacylase 2 (putative) 2 2
MIRT685382 TNFRSF13C TNF receptor superfamily member 13C 2 2
MIRT685456 CACNG8 calcium voltage-gated channel auxiliary subunit gamma 8 2 2
MIRT685810 SLC27A1 solute carrier family 27 member 1 2 2
MIRT685913 MOCS3 molybdenum cofactor synthesis 3 2 2
MIRT686665 TMEM120B transmembrane protein 120B 2 2
MIRT686955 SFT2D2 SFT2 domain containing 2 2 2
MIRT687118 QPCTL glutaminyl-peptide cyclotransferase like 2 2
MIRT687739 KIAA1328 KIAA1328 2 2
MIRT688063 GLUL glutamate-ammonia ligase 2 2
MIRT688191 FNIP1 folliculin interacting protein 1 2 2
MIRT688769 CDH7 cadherin 7 2 2
MIRT688979 ATP6AP1 ATPase H+ transporting accessory protein 1 2 2
MIRT689572 NUDT7 nudix hydrolase 7 2 2
MIRT689683 TMPRSS12 transmembrane protease, serine 12 2 2
MIRT689930 MANSC1 MANSC domain containing 1 2 2
MIRT690089 PNMA2 paraneoplastic Ma antigen 2 2 2
MIRT690190 C5orf45 MRN complex interacting protein 2 2
MIRT690246 CAMLG calcium modulating ligand 2 2
MIRT690411 FAM71F2 family with sequence similarity 71 member F2 2 2
MIRT690840 DSN1 DSN1 homolog, MIS12 kinetochore complex component 2 2
MIRT690889 FUT2 fucosyltransferase 2 2 2
MIRT691107 ADIPOQ adiponectin, C1Q and collagen domain containing 2 2
MIRT691229 DFNB59 pejvakin 2 2
MIRT691300 ZNF681 zinc finger protein 681 2 2
MIRT691366 GP5 glycoprotein V platelet 2 2
MIRT691797 WARS tryptophanyl-tRNA synthetase 2 2
MIRT692142 CEP104 centrosomal protein 104 2 2
MIRT692572 NCMAP non-compact myelin associated protein 2 2
MIRT692649 ZMYM1 zinc finger MYM-type containing 1 2 2
MIRT692744 NDUFS5 NADH:ubiquinone oxidoreductase subunit S5 2 2
MIRT693092 SCNM1 sodium channel modifier 1 2 2
MIRT693296 SYTL3 synaptotagmin like 3 2 2
MIRT693392 ZNF460 zinc finger protein 460 2 2
MIRT693530 ZNF708 zinc finger protein 708 2 2
MIRT693562 PIGR polymeric immunoglobulin receptor 2 2
MIRT694492 AGBL5 ATP/GTP binding protein like 5 2 2
MIRT694722 LLGL1 LLGL1, scribble cell polarity complex component 2 2
MIRT694866 ZNF417 zinc finger protein 417 2 2
MIRT695070 ZNF17 zinc finger protein 17 2 2
MIRT695451 COX18 COX18, cytochrome c oxidase assembly factor 2 2
MIRT695724 ZNF117 zinc finger protein 117 2 2
MIRT695898 MED16 mediator complex subunit 16 2 2
MIRT696244 UGGT1 UDP-glucose glycoprotein glucosyltransferase 1 2 2
MIRT696259 TACO1 translational activator of cytochrome c oxidase I 2 2
MIRT696512 C3 complement C3 2 2
MIRT696560 TTC21B tetratricopeptide repeat domain 21B 2 2
MIRT696643 AGXT2 alanine--glyoxylate aminotransferase 2 2 2
MIRT696791 DHODH dihydroorotate dehydrogenase (quinone) 2 2
MIRT696819 PLLP plasmolipin 2 2
MIRT697088 GPKOW G-patch domain and KOW motifs 2 2
MIRT697153 INMT indolethylamine N-methyltransferase 2 2
MIRT697202 ZYG11A zyg-11 family member A, cell cycle regulator 2 2
MIRT697322 ZNF641 zinc finger protein 641 2 2
MIRT697578 YME1L1 YME1 like 1 ATPase 2 2
MIRT697619 WSB1 WD repeat and SOCS box containing 1 2 2
MIRT698619 TES testin LIM domain protein 2 2
MIRT698804 STK38 serine/threonine kinase 38 2 2
MIRT698949 SPAST spastin 2 2
MIRT699083 SNRPD3 small nuclear ribonucleoprotein D3 polypeptide 2 2
MIRT699430 SLC1A5 solute carrier family 1 member 5 2 2
MIRT699550 SIT1 signaling threshold regulating transmembrane adaptor 1 2 2
MIRT700324 RAB4A RAB4A, member RAS oncogene family 2 2
MIRT700360 RAB33B RAB33B, member RAS oncogene family 2 2
MIRT700462 PURB purine rich element binding protein B 2 2
MIRT701677 MYADM myeloid associated differentiation marker 2 2
MIRT701757 MSL2 MSL complex subunit 2 2 2
MIRT701977 MIER3 MIER family member 3 2 2
MIRT703178 GPBP1 GC-rich promoter binding protein 1 2 2
MIRT703203 GOLGA3 golgin A3 2 2
MIRT703359 GAPVD1 GTPase activating protein and VPS9 domains 1 2 2
MIRT703425 FYTTD1 forty-two-three domain containing 1 2 2
MIRT703484 FNDC3B fibronectin type III domain containing 3B 2 2
MIRT703590 FBXO45 F-box protein 45 2 2
MIRT703806 EVI5 ecotropic viral integration site 5 2 2
MIRT703915 EPG5 ectopic P-granules autophagy protein 5 homolog 2 2
MIRT704234 DHDDS dehydrodolichyl diphosphate synthase subunit 2 2
MIRT704646 CLCC1 chloride channel CLIC like 1 2 2
MIRT705151 C11orf58 chromosome 11 open reading frame 58 2 2
MIRT705480 ASXL2 additional sex combs like 2, transcriptional regulator 2 2
MIRT705530 ARL10 ADP ribosylation factor like GTPase 10 2 2
MIRT705661 ANKRD40 ankyrin repeat domain 40 2 2
MIRT706144 ZNF674 zinc finger protein 674 2 2
MIRT706473 SNX27 sorting nexin family member 27 2 2
MIRT708254 PGPEP1 pyroglutamyl-peptidase I 2 2
MIRT708838 SCAND3 zinc finger BED-type containing 9 1 1
MIRT710437 BTNL3 butyrophilin like 3 2 2
MIRT711325 DPYSL5 dihydropyrimidinase like 5 2 2
MIRT716151 RBM48 RNA binding motif protein 48 2 2
MIRT717402 ZCCHC24 zinc finger CCHC-type containing 24 2 2
MIRT720866 ADCY5 adenylate cyclase 5 2 2
MIRT722226 ZNF503 zinc finger protein 503 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-1273h-5p Paclitaxel 36314 NSC125973 approved sensitive High Ovarian Cancer cell line (SKOV3)
hsa-miR-1273h-5p Tripterygium wilfordii Hook F resistant tissue
hsa-miR-1273h-5p Cisplatin 5460033 NSC119875 approved sensitive cell line (MGC-803)

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