pre-miRNA Information
pre-miRNA hsa-mir-1303   
Genomic Coordinates chr5: 154685776 - 154685861
Synonyms MIRN1303, hsa-mir-1303, MIR1303
Description Homo sapiens miR-1303 stem-loop
Comment None
RNA Secondary Structure
Associated Diseases

Mature miRNA Information
Mature miRNA hsa-miR-1303
Sequence 52| UUUAGAGACGGGGUCUUGCUCU |73
Evidence Experimental
Experiments Illumina
Editing Events in miRNAs
Modification Type Position on miR Chromosome DNA Strand Genomic Position (hg38) List of PMIDs Variant details
A-to-I 4 5 + 154685830 23291724, 29233923 MiREDiBase
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs370437195 6 dbSNP
rs1195001383 7 dbSNP
rs546614687 8 dbSNP
rs762579883 9 dbSNP
rs766041486 10 dbSNP
rs751079975 12 dbSNP
rs888516744 13 dbSNP
rs566454487 14 dbSNP
rs766973220 15 dbSNP
rs1474274822 17 dbSNP
rs753222192 18 dbSNP
rs1230907999 19 dbSNP
rs756552638 22 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol RNF8   
Synonyms hRNF8
Description ring finger protein 8
Transcript NM_003958   
Other Transcripts NM_183078   
Expression
Putative miRNA Targets on RNF8
3'UTR of RNF8
(miRNA target sites are highlighted)
>RNF8|NM_003958|3'UTR
   1 AGACCGTGCTCTAAGGGCATTTGAAAGACTGCCAGGTAGTGCGAGCCTGAGATGGTCTGGAGGATTCTCTCTAGCCGTGA
  81 CTCCGCTGCTCTGAAGGTCAACTGAGAAGTCTTGTGGGACAGAGACTTGAGTTAGGAAGCCCTCAGTCACTTGCCTTCCA
 161 CGGTGGCCAGCCCTGCTGCCATCATTGGCTGAAGCACCACCAGGATTCACGGCACCCAACTGCTTCAGGGTACTTCGTAG
 241 ACTCTGCCTCACTACATGTCGAAAGAGTTATTTGAGTTCTCTTCTGTTTTTTTTTAATTTGTTGTTGTTGTTACTGTTTT
 321 GATACCTCGGAAACACCTCCGTTGACAGTTGTTTTGGATAGGTTGGGTGTACCCCATGGCTGCCTCTGAAGGCAGTGTCT
 401 ATTTTGAGAGGATGGCTTACCTCTTCTTTGTGAAAATACTATCTCATTTCCTGGAAATAAAATGTAAAACCTGTCAGTTG
 481 CTCAGCTGGGCTTTGGTGTATTTACCTTCCTTCCCTTCCTGCTCCCAGACAGTCTCACAAGTAAACACCAGCAGCTCATA
 561 GATTACAACCAAGAAAGTGACTGTATCAGATGATAGACTTCAAGTGAATGTCAGCCTAAGAGGCCAAGCTGCAGATCGTG
 641 GCAACAGATGAGCTCTGTTAACCTCCTGACTGTCGTGTTTCCTTTTTATTACAGAGGTGGGTCACTGTTTACCTTGTTTC
 721 AGGGGTGGGAGAAACTCCTTTCCTTCAGCTGGCATTTGAATGTTTCCAAATCTATTTTATCTGACGTCATGAACACACAG
 801 GCAATGATTTTATGACAACTTGATGTGCTTTTTTCTTTATTTTTCTTTTACATTAGAAGTTTTCTCTCTTTTCTCCACCT
 881 CTCCTTTATTTTTAATTTTAATTTTAATTTTTGAAACAAGATCTGACTCTGTTGCCCAAGCTGGAGTACAGTAGTGCAAT
 961 CTCAGCTCACTGCAACCTCCACCTCCCAGACTCAAGCCATCCTCCCACCTCAACCTCCCAAGTAGCTGGGACTACAGGCA
1041 TATGCCATCACACCCAGCTAATTTTTGTTTTTCTGTAGAGACAGGGTTTCACCATGTTGGCCAGGCTGGTCTCAAATTCC
1121 TGACCTTAAGTGATCCACCTGCCTAGGCCTCTAAAATGCTGGGATTACAGGCGTGAGCCACCACGCCCAGCCTATACCCC
1201 ATGTATTTTCATAAAGGGTTGGAAACTATTGATTGCCAACTTTTTAAGGATGGTAGGGATTTTTTCTTTGTTGAATATAC
1281 TGTGAATTTTGGGATTCTGGAGTCCTTAGTCTTCATTTCCATTCTTCTGCCCATGATTACTGATCAAAATACTGGTAGAG
1361 TCATGGAGGAAGTAAGTTAAATGTGGAAAAAATGCTTTAAAAGTACTTACTATAACCACATCATAAGAATTCTGGAAAAA
1441 TAGAGAACAAAAGGAAAAGATTGTTACCACCTTGATTTAATAACTTCTTGTTTCCCCATACATGTGTTTTGTTTATAGAT
1521 TGCATGGGTATATGTCAATTTTTATATGTTCTGTGTTTAGTTTACATATTGTAATTCATTTTTAAGAGAGTACAGACATA
1601 CACTTTTTGAGTAGGCAATATGTTCACATAGTTTGAAATTAAAGGTACAAAATGGCGTAGAATGAAATGCCTCTCACCCT
1681 TTCCCCACAGCGACTACTTCCCACTCAGAGGCAACAAGTATTACAGTTGCTTGTATATTCTTCCAGAGATCTCTGTCTAT
1761 ACAAGCAAAAACACATGTGGTCTTTTTCCTTGCTTTGCACAAATGGTAAACTGTACGCTATTCTGAACCTTGCTTTTTTC
1841 AGATATATGTTGGCAACAGTTCCATGTCAGTACATAGTTTCCTTTCTTTATTACAGCTGCCTGTTTTTTCATTGTGTATT
1921 TGCACCATCATTTACTTTTCTGGCTTACTTTTGATAGAAATCTAGGTTGGTTCAAACCTTTTTACTCTTAAAACAATGCT
2001 GCAGTTAACACCCTTGTACATATATCTTTAGAGAGAAGATATTTTAAAAAGAAATACCTTTTTAAAAATTATTTTATTAT
2081 TTTTTAATAGAGACTATGTTGCCTAGGCTGGTCTTGAAATTCTGGGCTAAAGCAATCCTACCACCTTGGCCTCCCAAAGT
2161 GCTGAGATTACAGGCATGAGCCATTGCACCTGGCCAAGAAGAGACATCTTGACTTGAGCCTGAAGACTATGTACAGAGAC
2241 TGACCTCACAGACTGACCATTCCATCCCACAGCTGCTGGACATAGAGTGATTTGCAGCCCCTCCTTTCAGAGTACCACAT
2321 CCCTCTCAAGTGTTCCACAACATCTAGGAAAGTGAGCTCTTAAAGACAGACTAAAAAGAGTAATAAATCAATACAACAAC
2401 ATTAAAAGCCAGACTAGCGGAGTTTGAATCTTGGCCCTGCTGTTAGTAACTGTGTGAGCCTTGGGCAAGTTACTCAGCCT
2481 CCTTGTGTCTTGGTTTTGGTTTCTTCATCTCTAAGTAATTATATCTGTCATTATTGCCCTGATCACAAACAAAAGCCTGA
2561 ATGTACTATGTTTAAAAGACAAACCAAAAATTAACCCAAACTTGCATTATTTGTCTGAGCTACAGAATGTTCTTTCCTTG
2641 GAGAGATATCTGATATTAAACATCATCTGCATTTTACTTGCCTAGAAAATACACGGTAACTTTTCTGCCTTGCAGCATCA
2721 AACTATAGTACAGCTGAGCCCCAGTGCTGTGCAGTCTGACTCTAATTAAAGGCACCTTCTTTACAGCAGGGCTCTGGGGA
2801 ACTGGAAAAGGGGGTTTGTTTCATTATCTGGTTTTATTAAGCAGATGAATGCAGCCAGCTATATGAAGCACTTTGCAGTG
2881 AATGGCAGGTGTCCCATATCTGGTTATGTTAACCTAGAAAGGGCTCACTCTACCTCTAGGCATGTTTCATCCCAACAATC
2961 AGACTGTGCCAAAGCAGGGGACTTTGTCCTTTGTGGATTGCATAGCTGGATACCCATCATCTGTTTCTCTGATTGGAAGC
3041 TGCTGTTGTACAGAAAGACCTGCATTTCCCCCTTGTCTCCAGTTCTCTCACTACTTTTTCCTCCTCTGTGAGTGACCATC
3121 CAGGCAGTCACCATAACTGCTGGAGTGTCTGGGATTGGTAGCTCTCTCCAACTGCCTGCTTGCTCTTTACAGCCTCTCTC
3201 TGTGACTGGAATCTCTCCACCTCATCGTATCTAAGGATAACCCAGAAACATGGGGTGTCCTAGGTATGTTTATCTCGACA
3281 CTGAACCCCCTAGGCTTCTGATGAATCCAGTGATTAGCTAAATTTGACATAGAAAGTAAGAAGGAATGTCTACTTTGTAT
3361 TGTGGTCCTAATCTAAGATCAGGAGAATCCTGGAATTGTTATCTGTCTCTTGCTCTGAGATACAGACTTGTTCATAGGTG
3441 TGGGGCCTGATTGGAACAGGATCTGCCATTGGTCACAATAGGTCAAGGGCTTGTTCTGAACCCTAGTTAGCTTCATTCAG
3521 AGAAAGAAACTTCCTACCTGGTCAGCTTTTTCAGCTTCTCCAACAAATGGGAGTTGAGGCAGTAGGAGTGTGGGGTTCTT
3601 GGGAAGACGATGGGGCCTTGTATTAAGGAGAAATAATGAACTATCTTCTTGATTCTTCCATTGAGAAAAGCATATGAATC
3681 CTAGGAAAGGGCTCAGCCTGTGATAGGCATTCAATAAATACTCCAATGCTGTCATTCCTTTGTCTACAGCATCCCCAAAC
3761 AATGTACCAGTGATGGGCTACCTGAGCTCATCTAGTCGCCAAGCAGTATCTCCTGCTTGCTGCTGCTTTACTACATTCCA
3841 GATGCCCACCTCATCCAATTTCCAGAGCCACTATCTCTGCTGTCCACTTTCCTTCAGGCTCTGTGAATACTTCAACCTGC
3921 TGTGATTTGGGGCCGTTTGTACTCTGCATGTATTCAATAAATTCAATTCAGCAATAGTTAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' ucucguucuGGGGCAGAGAUUu 5'
                   |::| ||||||| 
Target 5' ttttggtttCTTCATCTCTAAg 3'
2494 - 2515 149.00 -10.90
2
miRNA  3' ucuCGUUCUGGGGCAGAGAUUu 5'
             | |:||::|  ||||||: 
Target 5' tctGGAGGATTC--TCTCTAGc 3'
56 - 75 139.00 -12.70
3
miRNA  3' ucucGUUCUGGG-GCAGAGAUUu 5'
              ||  |:|: : |||||:| 
Target 5' taccCATCATCTGTTTCTCTGAt 3'
3011 - 3033 130.00 -9.20
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSM314864 3 COSMIC
COSM5430163 3 COSMIC
COSM6768048 6 COSMIC
COSM9632265 12 COSMIC
COSM1078665 19 COSMIC
COSM3697831 33 COSMIC
COSM5031732 43 COSMIC
COSM7088819 52 COSMIC
COSM7088820 61 COSMIC
COSM7784853 68 COSMIC
COSM1078666 75 COSMIC
COSM8153048 80 COSMIC
COSM8180561 85 COSMIC
COSN31500611 135 COSMIC
COSN30494384 146 COSMIC
COSN30456358 159 COSMIC
COSN26539866 166 COSMIC
COSN30506283 168 COSMIC
COSN30184418 176 COSMIC
COSN31598776 199 COSMIC
COSN22235473 205 COSMIC
COSN31559165 262 COSMIC
COSN26420242 296 COSMIC
COSN31525406 329 COSMIC
COSN30140650 342 COSMIC
COSN31525977 356 COSMIC
COSN28862418 369 COSMIC
COSN24011324 407 COSMIC
COSN27174990 475 COSMIC
COSN7790067 585 COSMIC
COSN7871892 1103 COSMIC
COSN2160966 1709 COSMIC
COSN30127480 1765 COSMIC
COSN15700555 2053 COSMIC
COSN29482378 2069 COSMIC
COSN22187251 2720 COSMIC
COSN27569389 2727 COSMIC
COSN20091384 3006 COSMIC
COSN2160967 3066 COSMIC
COSN20284609 3212 COSMIC
COSN32193485 3374 COSMIC
COSN9781918 3431 COSMIC
COSN9781919 3547 COSMIC
COSN1332539 3874 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs371527493 6 dbSNP
rs149383616 7 dbSNP
rs147060223 18 dbSNP
rs1314394855 31 dbSNP
rs1801835 34 dbSNP
rs772382265 36 dbSNP
rs772957459 41 dbSNP
rs138340769 43 dbSNP
rs1347781210 44 dbSNP
rs776562705 47 dbSNP
rs1293619420 51 dbSNP
rs1215068662 52 dbSNP
rs758979484 53 dbSNP
rs764641305 54 dbSNP
rs368814103 58 dbSNP
rs143785784 64 dbSNP
rs763840609 72 dbSNP
rs199891017 76 dbSNP
rs560787971 77 dbSNP
rs147328302 78 dbSNP
rs907522662 82 dbSNP
rs778832847 84 dbSNP
rs752859866 85 dbSNP
rs1446187699 86 dbSNP
rs965766033 90 dbSNP
rs758505671 97 dbSNP
rs777991954 98 dbSNP
rs746746053 102 dbSNP
rs1411107051 104 dbSNP
rs1168980092 107 dbSNP
rs1404381380 109 dbSNP
rs1165124211 112 dbSNP
rs1395991694 115 dbSNP
rs1443997579 118 dbSNP
rs1331202886 121 dbSNP
rs770717306 125 dbSNP
rs1226641620 129 dbSNP
rs1425003529 130 dbSNP
rs922862121 132 dbSNP
rs781030970 139 dbSNP
rs1356165652 142 dbSNP
rs557883308 145 dbSNP
rs1041695614 149 dbSNP
rs932781406 150 dbSNP
rs1405837398 151 dbSNP
rs1049901828 162 dbSNP
rs1348475715 163 dbSNP
rs915299572 168 dbSNP
rs946777226 174 dbSNP
rs1365448620 180 dbSNP
rs377277354 184 dbSNP
rs547379096 186 dbSNP
rs529908053 187 dbSNP
rs571687454 192 dbSNP
rs1279860697 193 dbSNP
rs879843170 196 dbSNP
rs1207948714 203 dbSNP
rs188658306 211 dbSNP
rs143107928 212 dbSNP
rs532490626 218 dbSNP
rs1028934220 220 dbSNP
rs1163479824 224 dbSNP
rs1224333752 235 dbSNP
rs1003581593 237 dbSNP
rs1260785901 237 dbSNP
rs1056363149 238 dbSNP
rs1488595299 239 dbSNP
rs1268060667 240 dbSNP
rs116705399 241 dbSNP
rs1323569401 246 dbSNP
rs1012065548 261 dbSNP
rs772710042 262 dbSNP
rs1364697948 264 dbSNP
rs148249495 265 dbSNP
rs780665463 272 dbSNP
rs1280514533 274 dbSNP
rs534680931 282 dbSNP
rs1345477785 283 dbSNP
rs1384750738 286 dbSNP
rs1005024195 287 dbSNP
rs777715426 287 dbSNP
rs1425376184 296 dbSNP
rs1304961464 297 dbSNP
rs1368966820 298 dbSNP
rs1464801410 298 dbSNP
rs1014707529 299 dbSNP
rs966062883 302 dbSNP
rs1337280219 305 dbSNP
rs1478014455 308 dbSNP
rs769039289 317 dbSNP
rs975721489 322 dbSNP
rs555064412 325 dbSNP
rs753704654 329 dbSNP
rs1242587517 330 dbSNP
rs1027840163 337 dbSNP
rs958929593 338 dbSNP
rs568424441 341 dbSNP
rs370854177 342 dbSNP
rs762086438 352 dbSNP
rs950339211 359 dbSNP
rs977399982 362 dbSNP
rs1299565645 363 dbSNP
rs55674793 373 dbSNP
rs1368861973 374 dbSNP
rs924057588 377 dbSNP
rs936104274 391 dbSNP
rs1054440372 396 dbSNP
rs939295444 402 dbSNP
rs1332936769 404 dbSNP
rs1466010024 407 dbSNP
rs1056498295 413 dbSNP
rs1435452038 418 dbSNP
rs1195988482 422 dbSNP
rs895036183 425 dbSNP
rs921331321 426 dbSNP
rs1251755299 439 dbSNP
rs947939956 442 dbSNP
rs1049032820 444 dbSNP
rs769854325 451 dbSNP
rs1240319504 465 dbSNP
rs1182361332 466 dbSNP
rs1243076601 471 dbSNP
rs931874906 474 dbSNP
rs557319754 475 dbSNP
rs1004725180 507 dbSNP
rs1165577849 508 dbSNP
rs1015046164 514 dbSNP
rs1388362219 515 dbSNP
rs1284157877 516 dbSNP
rs1238870873 526 dbSNP
rs1374010666 537 dbSNP
rs1310728125 539 dbSNP
rs1461710474 541 dbSNP
rs1447078013 552 dbSNP
rs901610087 579 dbSNP
rs1300894856 586 dbSNP
rs141290438 591 dbSNP
rs1157956321 595 dbSNP
rs1008782890 609 dbSNP
rs565987354 610 dbSNP
rs1335767614 617 dbSNP
rs762983736 619 dbSNP
rs1423495999 632 dbSNP
rs897468372 635 dbSNP
rs553221143 636 dbSNP
rs1383466986 638 dbSNP
rs1483776758 639 dbSNP
rs766328823 653 dbSNP
rs994490461 658 dbSNP
rs953072537 662 dbSNP
rs191717756 664 dbSNP
rs540628472 675 dbSNP
rs147424845 676 dbSNP
rs529797470 677 dbSNP
rs1013117132 684 dbSNP
rs45613533 689 dbSNP
rs1397621835 705 dbSNP
rs1379867388 722 dbSNP
rs1379613652 723 dbSNP
rs1297278725 736 dbSNP
rs1202184362 747 dbSNP
rs1362341881 762 dbSNP
rs971624093 769 dbSNP
rs767340368 772 dbSNP
rs1457454860 781 dbSNP
rs45518334 782 dbSNP
rs537616683 784 dbSNP
rs532325488 786 dbSNP
rs552522692 787 dbSNP
rs1185935187 792 dbSNP
rs992274903 805 dbSNP
rs916568929 819 dbSNP
rs1205252271 822 dbSNP
rs1427987984 826 dbSNP
rs1263377168 830 dbSNP
rs1246536156 841 dbSNP
rs1335025846 843 dbSNP
rs1277366222 845 dbSNP
rs1216540385 847 dbSNP
rs921392514 853 dbSNP
rs1193903040 860 dbSNP
rs1342349346 860 dbSNP
rs1386354093 863 dbSNP
rs755804297 867 dbSNP
rs139799691 877 dbSNP
rs1458623976 885 dbSNP
rs1425038989 890 dbSNP
rs1478994041 890 dbSNP
rs182444080 890 dbSNP
rs1198766005 917 dbSNP
rs1431874874 922 dbSNP
rs548244394 925 dbSNP
rs1264666949 926 dbSNP
rs1211069929 928 dbSNP
rs1468677577 931 dbSNP
rs1196592901 937 dbSNP
rs1175480779 941 dbSNP
rs1406504072 945 dbSNP
rs1470942866 946 dbSNP
rs1319732500 955 dbSNP
rs1270488412 957 dbSNP
rs1049414911 967 dbSNP
rs778378758 980 dbSNP
rs1050277248 985 dbSNP
rs1360748425 990 dbSNP
rs887701554 1005 dbSNP
rs1382304284 1009 dbSNP
rs376172177 1014 dbSNP
rs1399903640 1015 dbSNP
rs944620322 1025 dbSNP
rs1036310759 1026 dbSNP
rs897724954 1031 dbSNP
rs1401483976 1035 dbSNP
rs745549288 1036 dbSNP
rs1172296713 1048 dbSNP
rs1477346381 1051 dbSNP
rs1262957718 1052 dbSNP
rs1036210521 1058 dbSNP
rs1454325259 1060 dbSNP
rs994542905 1061 dbSNP
rs1206193291 1065 dbSNP
rs1176401259 1079 dbSNP
rs901712528 1083 dbSNP
rs1049194341 1084 dbSNP
rs1050171522 1109 dbSNP
rs894230803 1142 dbSNP
rs1342830834 1144 dbSNP
rs1013042172 1154 dbSNP
rs1024495793 1164 dbSNP
rs1205811525 1173 dbSNP
rs1235191941 1173 dbSNP
rs763585941 1174 dbSNP
rs534272587 1178 dbSNP
rs1307086326 1182 dbSNP
rs998964701 1184 dbSNP
rs1449294217 1191 dbSNP
rs1031925254 1195 dbSNP
rs1011204415 1206 dbSNP
rs1022931049 1218 dbSNP
rs1405061542 1221 dbSNP
rs1173671631 1226 dbSNP
rs957611705 1227 dbSNP
rs1379170410 1229 dbSNP
rs990174433 1238 dbSNP
rs1031158037 1247 dbSNP
rs868339414 1254 dbSNP
rs143380670 1258 dbSNP
rs954176101 1271 dbSNP
rs777335467 1280 dbSNP
rs1186635222 1293 dbSNP
rs987262566 1302 dbSNP
rs1440468734 1305 dbSNP
rs557011585 1310 dbSNP
rs912637609 1322 dbSNP
rs1258254973 1333 dbSNP
rs944544989 1342 dbSNP
rs1481294231 1347 dbSNP
rs1283997212 1365 dbSNP
rs1156588287 1370 dbSNP
rs1344550494 1377 dbSNP
rs1283808511 1379 dbSNP
rs971887101 1382 dbSNP
rs1446372821 1384 dbSNP
rs919206860 1394 dbSNP
rs930511676 1401 dbSNP
rs1399957976 1404 dbSNP
rs1048724150 1410 dbSNP
rs195433 1413 dbSNP
rs948509578 1416 dbSNP
rs567639169 1419 dbSNP
rs984824776 1420 dbSNP
rs539607386 1421 dbSNP
rs371153772 1424 dbSNP
rs1162278769 1434 dbSNP
rs756777525 1436 dbSNP
rs1283512749 1442 dbSNP
rs999013763 1454 dbSNP
rs1036710850 1460 dbSNP
rs375484905 1464 dbSNP
rs1260910573 1469 dbSNP
rs1218965231 1478 dbSNP
rs573410424 1484 dbSNP
rs923105102 1485 dbSNP
rs1226836120 1488 dbSNP
rs1358677919 1494 dbSNP
rs893393348 1494 dbSNP
rs933188420 1495 dbSNP
rs1218375586 1506 dbSNP
rs1012220963 1511 dbSNP
rs1339154833 1513 dbSNP
rs1300570200 1519 dbSNP
rs1050102076 1525 dbSNP
rs888867944 1526 dbSNP
rs1316870372 1533 dbSNP
rs78967284 1535 dbSNP
rs187084631 1539 dbSNP
rs1042743645 1540 dbSNP
rs986802450 1542 dbSNP
rs1421483679 1547 dbSNP
rs574359085 1549 dbSNP
rs961444902 1554 dbSNP
rs780753344 1556 dbSNP
rs543182334 1560 dbSNP
rs902878141 1561 dbSNP
rs919051337 1569 dbSNP
rs771736433 1570 dbSNP
rs965089490 1572 dbSNP
rs563345527 1575 dbSNP
rs577127598 1581 dbSNP
rs1031711608 1595 dbSNP
rs1316443116 1597 dbSNP
rs1280416609 1599 dbSNP
rs1490885472 1602 dbSNP
rs191138386 1607 dbSNP
rs368533149 1609 dbSNP
rs536657790 1619 dbSNP
rs915816320 1621 dbSNP
rs1396299882 1629 dbSNP
rs1326167932 1632 dbSNP
rs948412684 1650 dbSNP
rs1397869566 1657 dbSNP
rs183645889 1658 dbSNP
rs147145891 1686 dbSNP
rs1423454859 1687 dbSNP
rs934373051 1690 dbSNP
rs747484717 1692 dbSNP
rs985309090 1693 dbSNP
rs1253938575 1696 dbSNP
rs893279034 1711 dbSNP
rs1011734407 1718 dbSNP
rs1456565113 1730 dbSNP
rs1296849257 1736 dbSNP
rs962392301 1738 dbSNP
rs1029017791 1741 dbSNP
rs1312161334 1743 dbSNP
rs1224882317 1744 dbSNP
rs1277106198 1757 dbSNP
rs890039622 1761 dbSNP
rs1217039260 1775 dbSNP
rs1309779177 1778 dbSNP
rs971997537 1800 dbSNP
rs1008677826 1817 dbSNP
rs1357841478 1818 dbSNP
rs561966478 1829 dbSNP
rs1374149209 1830 dbSNP
rs1299708703 1832 dbSNP
rs1442636850 1842 dbSNP
rs1358561802 1847 dbSNP
rs530905719 1857 dbSNP
rs933116319 1859 dbSNP
rs1436435657 1865 dbSNP
rs1050240212 1867 dbSNP
rs550673437 1871 dbSNP
rs1019590662 1877 dbSNP
rs1438096025 1883 dbSNP
rs1252886811 1886 dbSNP
rs570570043 1895 dbSNP
rs947145147 1900 dbSNP
rs1043223015 1912 dbSNP
rs1212881607 1913 dbSNP
rs1349174108 1913 dbSNP
rs9470574 1917 dbSNP
rs972789248 1927 dbSNP
rs1238752670 1935 dbSNP
rs1351118883 1943 dbSNP
rs1202660791 1954 dbSNP
rs1026164480 1956 dbSNP
rs1300804998 1970 dbSNP
rs1416566462 1971 dbSNP
rs1375942972 1986 dbSNP
rs951998845 2001 dbSNP
rs984621836 2005 dbSNP
rs1417911265 2009 dbSNP
rs915849516 2012 dbSNP
rs1365835944 2016 dbSNP
rs140351039 2021 dbSNP
rs195434 2024 dbSNP
rs1412111927 2025 dbSNP
rs1190465298 2030 dbSNP
rs1486308287 2040 dbSNP
rs928280720 2041 dbSNP
rs1215335187 2047 dbSNP
rs1484603497 2050 dbSNP
rs1443874268 2057 dbSNP
rs1261901697 2058 dbSNP
rs934427048 2061 dbSNP
rs1023794168 2063 dbSNP
rs1320690742 2070 dbSNP
rs796196391 2097 dbSNP
rs1386523318 2106 dbSNP
rs1052832539 2124 dbSNP
rs905381630 2133 dbSNP
rs1006303041 2136 dbSNP
rs1407907351 2168 dbSNP
rs914306451 2185 dbSNP
rs1354385552 2186 dbSNP
rs535805903 2188 dbSNP
rs1398000089 2196 dbSNP
rs1333721789 2198 dbSNP
rs1049913661 2200 dbSNP
rs1381254867 2205 dbSNP
rs890039994 2210 dbSNP
rs1167617501 2217 dbSNP
rs1475733595 2220 dbSNP
rs1008438404 2226 dbSNP
rs1452498202 2229 dbSNP
rs1041083379 2234 dbSNP
rs1192129632 2243 dbSNP
rs1430749923 2248 dbSNP
rs1263243949 2249 dbSNP
rs897128892 2254 dbSNP
rs994155069 2259 dbSNP
rs1315876273 2260 dbSNP
rs539363649 2283 dbSNP
rs1487976830 2286 dbSNP
rs1027094508 2305 dbSNP
rs1335243036 2310 dbSNP
rs952824049 2322 dbSNP
rs1203195072 2325 dbSNP
rs556005170 2333 dbSNP
rs1006475374 2337 dbSNP
rs1296441784 2342 dbSNP
rs1022758158 2343 dbSNP
rs574371852 2350 dbSNP
rs1328170625 2358 dbSNP
rs981296487 2360 dbSNP
rs1308237562 2365 dbSNP
rs1206386593 2370 dbSNP
rs928543525 2371 dbSNP
rs1460843885 2381 dbSNP
rs188585040 2383 dbSNP
rs910371471 2394 dbSNP
rs947240481 2398 dbSNP
rs1432077497 2409 dbSNP
rs1250821755 2410 dbSNP
rs1185362511 2412 dbSNP
rs769075216 2419 dbSNP
rs1257223507 2420 dbSNP
rs1411250725 2421 dbSNP
rs557102029 2446 dbSNP
rs1341452054 2447 dbSNP
rs576968503 2451 dbSNP
rs545913707 2452 dbSNP
rs149694979 2454 dbSNP
rs947120625 2459 dbSNP
rs541825016 2464 dbSNP
rs770968593 2466 dbSNP
rs949604497 2474 dbSNP
rs911369028 2475 dbSNP
rs944284808 2479 dbSNP
rs1393480420 2483 dbSNP
rs1397904512 2484 dbSNP
rs905359393 2490 dbSNP
rs1469786805 2494 dbSNP
rs1464934799 2499 dbSNP
rs1392750571 2500 dbSNP
rs1174930747 2503 dbSNP
rs1454475444 2505 dbSNP
rs1041348030 2512 dbSNP
rs1237170342 2526 dbSNP
rs1179472104 2533 dbSNP
rs572980599 2534 dbSNP
rs1439342120 2536 dbSNP
rs1199814491 2537 dbSNP
rs1250892559 2537 dbSNP
rs1484620112 2539 dbSNP
rs897393096 2545 dbSNP
rs1235069717 2549 dbSNP
rs949504060 2556 dbSNP
rs994208743 2562 dbSNP
rs1048392569 2564 dbSNP
rs888532089 2567 dbSNP
rs1012310388 2569 dbSNP
rs747482047 2574 dbSNP
rs897917783 2581 dbSNP
rs541778824 2590 dbSNP
rs1413506947 2604 dbSNP
rs1030270229 2606 dbSNP
rs1362953263 2612 dbSNP
rs1434790131 2614 dbSNP
rs1379377295 2616 dbSNP
rs1156453264 2624 dbSNP
rs954737969 2637 dbSNP
rs1364183798 2647 dbSNP
rs561981429 2649 dbSNP
rs1484671686 2664 dbSNP
rs1259495012 2669 dbSNP
rs1211761093 2676 dbSNP
rs1488001009 2680 dbSNP
rs1282159920 2685 dbSNP
rs969947378 2694 dbSNP
rs1002645519 2695 dbSNP
rs1281193748 2696 dbSNP
rs1241541914 2701 dbSNP
rs1284017226 2706 dbSNP
rs1322544660 2707 dbSNP
rs1204301414 2709 dbSNP
rs550901889 2710 dbSNP
rs1399865892 2716 dbSNP
rs986001390 2720 dbSNP
rs1315544439 2721 dbSNP
rs1402112984 2726 dbSNP
rs1268014189 2728 dbSNP
rs1017977187 2740 dbSNP
rs968539512 2756 dbSNP
rs759505863 2757 dbSNP
rs1420018473 2761 dbSNP
rs530817868 2773 dbSNP
rs979007771 2774 dbSNP
rs1214486205 2775 dbSNP
rs1195380412 2785 dbSNP
rs1447850009 2787 dbSNP
rs1289414864 2789 dbSNP
rs1242150785 2794 dbSNP
rs924363435 2795 dbSNP
rs955951115 2796 dbSNP
rs1274139489 2804 dbSNP
rs193250202 2817 dbSNP
rs185714374 2832 dbSNP
rs1360440468 2844 dbSNP
rs992607969 2848 dbSNP
rs1432256255 2851 dbSNP
rs1326713907 2854 dbSNP
rs1324797247 2884 dbSNP
rs1427712539 2891 dbSNP
rs1480313124 2892 dbSNP
rs1177523186 2894 dbSNP
rs1165316351 2899 dbSNP
rs1409345678 2901 dbSNP
rs533290596 2903 dbSNP
rs916912621 2906 dbSNP
rs1188386712 2922 dbSNP
rs1475782581 2929 dbSNP
rs1399419962 2933 dbSNP
rs968889872 2937 dbSNP
rs1045303109 2944 dbSNP
rs926877297 2953 dbSNP
rs1254051744 2954 dbSNP
rs985196144 2957 dbSNP
rs1198370035 2966 dbSNP
rs9462307 2976 dbSNP
rs1038293370 2990 dbSNP
rs944209622 2994 dbSNP
rs976915782 3003 dbSNP
rs61308619 3005 dbSNP
rs1326391658 3010 dbSNP
rs993529250 3012 dbSNP
rs930173144 3014 dbSNP
rs1051829897 3021 dbSNP
rs1410410620 3024 dbSNP
rs1223907336 3025 dbSNP
rs890451532 3026 dbSNP
rs1455775921 3035 dbSNP
rs1007516229 3044 dbSNP
rs536020282 3049 dbSNP
rs760346337 3052 dbSNP
rs1234890363 3057 dbSNP
rs190182105 3058 dbSNP
rs569495432 3070 dbSNP
rs1045180061 3078 dbSNP
rs906626492 3080 dbSNP
rs1442297753 3099 dbSNP
rs537049358 3104 dbSNP
rs1279030713 3105 dbSNP
rs1231413112 3106 dbSNP
rs1000143274 3107 dbSNP
rs1002697941 3108 dbSNP
rs373607265 3109 dbSNP
rs762398585 3115 dbSNP
rs770068663 3117 dbSNP
rs1370930890 3130 dbSNP
rs955893995 3134 dbSNP
rs992577020 3142 dbSNP
rs1374735265 3148 dbSNP
rs891713906 3152 dbSNP
rs969678909 3156 dbSNP
rs1376362089 3164 dbSNP
rs763828501 3172 dbSNP
rs1417495067 3193 dbSNP
rs1469094914 3206 dbSNP
rs1178097830 3210 dbSNP
rs1475196183 3222 dbSNP
rs1010083190 3228 dbSNP
rs1021720115 3238 dbSNP
rs1158479999 3247 dbSNP
rs926871962 3251 dbSNP
rs968441407 3251 dbSNP
rs796496832 3253 dbSNP
rs1037985463 3263 dbSNP
rs1314725114 3265 dbSNP
rs1421596525 3275 dbSNP
rs919410522 3277 dbSNP
rs1018062119 3284 dbSNP
rs1354803082 3291 dbSNP
rs1291355096 3293 dbSNP
rs1416465735 3302 dbSNP
rs929514294 3310 dbSNP
rs1288312822 3316 dbSNP
rs1451933658 3332 dbSNP
rs1347151391 3347 dbSNP
rs965115866 3347 dbSNP
rs545576395 3349 dbSNP
rs1161685773 3370 dbSNP
rs576899774 3379 dbSNP
rs1365210036 3384 dbSNP
rs145533836 3388 dbSNP
rs553002218 3395 dbSNP
rs1325328108 3401 dbSNP
rs918735748 3403 dbSNP
rs1333745970 3416 dbSNP
rs1441465270 3418 dbSNP
rs1475795021 3425 dbSNP
rs1256287031 3427 dbSNP
rs115321600 3431 dbSNP
rs1484715431 3435 dbSNP
rs1262107470 3436 dbSNP
rs1355685659 3438 dbSNP
rs1333888375 3446 dbSNP
rs541964201 3452 dbSNP
rs1235084286 3464 dbSNP
rs866506234 3470 dbSNP
rs1294995959 3507 dbSNP
rs904553599 3512 dbSNP
rs1364433953 3515 dbSNP
rs1289672371 3516 dbSNP
rs1440374546 3526 dbSNP
rs1000515082 3528 dbSNP
rs1167503122 3533 dbSNP
rs948120078 3540 dbSNP
rs1462469562 3542 dbSNP
rs1031628918 3546 dbSNP
rs955819582 3547 dbSNP
rs1426210762 3559 dbSNP
rs1014105278 3565 dbSNP
rs1188815067 3568 dbSNP
rs1467712584 3572 dbSNP
rs555374346 3573 dbSNP
rs1215301912 3574 dbSNP
rs969813259 3576 dbSNP
rs763132509 3583 dbSNP
rs1359757473 3591 dbSNP
rs1211238187 3595 dbSNP
rs906636537 3609 dbSNP
rs1436426306 3610 dbSNP
rs939397331 3623 dbSNP
rs1296328796 3632 dbSNP
rs1440488764 3633 dbSNP
rs1056910729 3634 dbSNP
rs891600872 3636 dbSNP
rs766645271 3646 dbSNP
rs909525598 3662 dbSNP
rs1010470247 3665 dbSNP
rs1396494719 3675 dbSNP
rs1296959075 3677 dbSNP
rs572339183 3692 dbSNP
rs974059342 3695 dbSNP
rs114611753 3697 dbSNP
rs866950892 3700 dbSNP
rs1392854136 3705 dbSNP
rs1195342067 3707 dbSNP
rs756865544 3708 dbSNP
rs1249488086 3712 dbSNP
rs1194028838 3713 dbSNP
rs1481554128 3715 dbSNP
rs987610173 3717 dbSNP
rs1384654505 3725 dbSNP
rs1346066332 3728 dbSNP
rs1425590821 3735 dbSNP
rs1305888525 3751 dbSNP
rs1165208985 3756 dbSNP
rs1006591900 3758 dbSNP
rs912088015 3762 dbSNP
rs868672398 3763 dbSNP
rs1393676230 3764 dbSNP
rs1397794743 3783 dbSNP
rs1308162510 3790 dbSNP
rs1039154291 3791 dbSNP
rs1329234486 3795 dbSNP
rs1373029377 3798 dbSNP
rs904521184 3808 dbSNP
rs1478125084 3809 dbSNP
rs1363044321 3812 dbSNP
rs1179362276 3814 dbSNP
rs1450313202 3832 dbSNP
rs9470575 3834 dbSNP
rs1252437786 3835 dbSNP
rs1210339088 3836 dbSNP
rs1313797313 3850 dbSNP
rs1282489143 3855 dbSNP
rs936020230 3869 dbSNP
rs544091668 3878 dbSNP
rs891730889 3879 dbSNP
rs1469108694 3886 dbSNP
rs1241593991 3887 dbSNP
rs537176651 3888 dbSNP
rs1014072728 3889 dbSNP
rs1025387837 3891 dbSNP
rs564172305 3892 dbSNP
rs1293218799 3893 dbSNP
rs1024125928 3906 dbSNP
rs984694977 3916 dbSNP
rs1335575693 3917 dbSNP
rs1001683838 3921 dbSNP
rs1016722264 3927 dbSNP
rs563981871 3935 dbSNP
rs148559515 3936 dbSNP
rs972431959 3949 dbSNP
rs980801593 3951 dbSNP
rs1026493540 3954 dbSNP
rs927942271 3961 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HEK293S
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in GSM1084073. RNA binding protein: AGO2. Condition:CLIP_hippuristanol_rep1_AbnovaAb ...

- Karginov FV; Hannon GJ, 2013, Genes & development.

Article - Karginov FV; Hannon GJ
- Genes & development, 2013
When adapting to environmental stress, cells attenuate and reprogram their translational output. In part, these altered translation profiles are established through changes in the interactions between RNA-binding proteins and mRNAs. The Argonaute 2 (Ago2)/microRNA (miRNA) machinery has been shown to participate in stress-induced translational up-regulation of a particular mRNA, CAT-1; however, a detailed, transcriptome-wide understanding of the involvement of Ago2 in the process has been lacking. Here, we profiled the overall changes in Ago2-mRNA interactions upon arsenite stress by cross-linking immunoprecipitation (CLIP) followed by high-throughput sequencing (CLIP-seq). Ago2 displayed a significant remodeling of its transcript occupancy, with the majority of 3' untranslated region (UTR) and coding sequence (CDS) sites exhibiting stronger interaction. Interestingly, target sites that were destined for release from Ago2 upon stress were depleted in miRNA complementarity signatures, suggesting an alternative mode of interaction. To compare the changes in Ago2-binding patterns across transcripts with changes in their translational states, we measured mRNA profiles on ribosome/polysome gradients by RNA sequencing (RNA-seq). Increased Ago2 occupancy correlated with stronger repression of translation for those mRNAs, as evidenced by a shift toward lighter gradient fractions upon stress, while release of Ago2 was associated with the limited number of transcripts that remained translated. Taken together, these data point to a role for Ago2 and the mammalian miRNAs in mediating the translational component of the stress response.
LinkOut: [PMID: 23824327]
CLIP-seq Support 1 for dataset GSM1084073
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_hippuristanol_rep1_AbnovaAb
Location of target site ENST00000373479.4 | 3UTR | CUAAAAUGCUGGGAUUACAGGC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
GSE28260 Renal cortex and medulla 0.698 4.0e-3 0.703 3.7e-3 13 Click to see details
GSE42095 Differentiated embryonic stem cells 0.486 9.4e-3 0.595 1.4e-3 23 Click to see details
GSE28544 Breast cancer -0.333 5.6e-2 -0.322 6.2e-2 24 Click to see details
GSE32688 Pancreatic cancer 0.285 5.7e-2 0.117 2.6e-1 32 Click to see details
GSE26953 Aortic valvular endothelial cells 0.313 6.8e-2 0.237 1.3e-1 24 Click to see details
GSE38974 Chronic obstructive pulmonary disease -0.167 2.1e-1 -0.067 3.8e-1 25 Click to see details
GSE38226 Liver fibrosis -0.118 3.1e-1 0.129 2.9e-1 21 Click to see details
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
186 hsa-miR-1303 Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT035871 SOAT1 sterol O-acyltransferase 1 1 1
MIRT035872 FHOD3 formin homology 2 domain containing 3 1 1
MIRT035873 RPL7A ribosomal protein L7a 1 1
MIRT035874 NCAPD2 non-SMC condensin I complex subunit D2 1 1
MIRT035875 RPS8 ribosomal protein S8 1 1
MIRT035876 AHNAK AHNAK nucleoprotein 1 1
MIRT035877 ACTB actin beta 1 1
MIRT035878 DEF8 differentially expressed in FDCP 8 homolog 1 1
MIRT035879 MET MET proto-oncogene, receptor tyrosine kinase 1 1
MIRT035880 MED13 mediator complex subunit 13 1 1
MIRT035881 FAT3 FAT atypical cadherin 3 1 1
MIRT035882 HUWE1 HECT, UBA and WWE domain containing 1, E3 ubiquitin protein ligase 1 1
MIRT035883 RPS16 ribosomal protein S16 1 1
MIRT035884 CDK6 cyclin dependent kinase 6 1 1
MIRT035885 GEMIN5 gem nuclear organelle associated protein 5 1 1
MIRT035886 PITRM1 pitrilysin metallopeptidase 1 1 1
MIRT035887 PRRC2A proline rich coiled-coil 2A 1 1
MIRT035888 KIAA0226 RUN and cysteine rich domain containing beclin 1 interacting protein 1 1
MIRT035889 MLLT6 MLLT6, PHD finger containing 1 1
MIRT035890 EIF3I eukaryotic translation initiation factor 3 subunit I 1 1
MIRT035891 FASN fatty acid synthase 1 1
MIRT035892 LEPREL4 prolyl 3-hydroxylase family member 4 (non-enzymatic) 1 1
MIRT035893 HSCB HscB mitochondrial iron-sulfur cluster cochaperone 1 1
MIRT035894 PSME4 proteasome activator subunit 4 1 1
MIRT035895 FRS2 fibroblast growth factor receptor substrate 2 1 1
MIRT035896 ZNF264 zinc finger protein 264 1 1
MIRT035897 HYLS1 HYLS1, centriolar and ciliogenesis associated 1 1
MIRT035898 USP54 ubiquitin specific peptidase 54 1 1
MIRT035899 L1TD1 LINE1 type transposase domain containing 1 1 1
MIRT035900 OR51E2 olfactory receptor family 51 subfamily E member 2 1 1
MIRT053762 CLDN18 claudin 18 3 1
MIRT060730 RPS3 ribosomal protein S3 2 2
MIRT083986 RAB22A RAB22A, member RAS oncogene family 2 2
MIRT098550 TBPL1 TATA-box binding protein like 1 2 6
MIRT134983 TWF1 twinfilin actin binding protein 1 2 4
MIRT136956 FNDC3A fibronectin type III domain containing 3A 2 2
MIRT222065 PURB purine rich element binding protein B 2 2
MIRT239574 UBN2 ubinuclein 2 2 4
MIRT261820 BUB3 BUB3, mitotic checkpoint protein 2 2
MIRT264698 C11ORF57 chromosome 11 open reading frame 57 2 4
MIRT308476 GXYLT2 glucoside xylosyltransferase 2 2 2
MIRT377481 NDUFB5 NADH:ubiquinone oxidoreductase subunit B5 2 2
MIRT442304 NEU3 neuraminidase 3 2 2
MIRT446083 SLC30A10 solute carrier family 30 member 10 2 2
MIRT449606 PRPF4 pre-mRNA processing factor 4 2 2
MIRT453767 NUCB1 nucleobindin 1 2 10
MIRT455603 SRSF3 serine and arginine rich splicing factor 3 2 2
MIRT455913 KIF2C kinesin family member 2C 2 2
MIRT460091 ZYG11B zyg-11 family member B, cell cycle regulator 2 4
MIRT460866 UBE2S ubiquitin conjugating enzyme E2 S 2 2
MIRT461339 NUP133 nucleoporin 133 2 2
MIRT463769 YOD1 YOD1 deubiquitinase 2 2
MIRT466368 THAP1 THAP domain containing 1 2 4
MIRT467168 SPTY2D1 SPT2 chromatin protein domain containing 1 2 2
MIRT468703 SDHD succinate dehydrogenase complex subunit D 2 2
MIRT469122 RNF126 ring finger protein 126 2 2
MIRT472426 NCBP2 nuclear cap binding protein subunit 2 2 4
MIRT479420 CDKN1B cyclin dependent kinase inhibitor 1B 2 8
MIRT484260 FAM177A1 family with sequence similarity 177 member A1 2 2
MIRT485468 IL6ST interleukin 6 signal transducer 2 10
MIRT490237 H2AFZ H2A histone family member Z 2 6
MIRT491002 ATF7IP activating transcription factor 7 interacting protein 2 2
MIRT492127 SUMO2 small ubiquitin-like modifier 2 2 2
MIRT499169 RBPJL recombination signal binding protein for immunoglobulin kappa J region like 2 2
MIRT499825 PCSK9 proprotein convertase subtilisin/kexin type 9 2 8
MIRT501794 NRAS NRAS proto-oncogene, GTPase 2 2
MIRT503441 GINS4 GINS complex subunit 4 2 4
MIRT503688 MAVS mitochondrial antiviral signaling protein 2 5
MIRT506926 IGDCC4 immunoglobulin superfamily DCC subclass member 4 2 6
MIRT511430 HOXA10 homeobox A10 2 6
MIRT512415 LAYN layilin 2 4
MIRT513791 NIPAL3 NIPA like domain containing 3 2 4
MIRT516163 NTMT1 N-terminal Xaa-Pro-Lys N-methyltransferase 1 2 4
MIRT516513 PARK2 parkin RBR E3 ubiquitin protein ligase 2 2
MIRT516915 HINFP histone H4 transcription factor 2 2
MIRT517102 NDUFV3 NADH:ubiquinone oxidoreductase subunit V3 2 2
MIRT517350 NLRP9 NLR family pyrin domain containing 9 2 2
MIRT518019 ABHD15 abhydrolase domain containing 15 2 2
MIRT520945 SRSF10 serine and arginine rich splicing factor 10 2 2
MIRT525250 RNF213 ring finger protein 213 2 2
MIRT530634 PPIC peptidylprolyl isomerase C 2 4
MIRT530671 CHRNB1 cholinergic receptor nicotinic beta 1 subunit 2 4
MIRT531563 ILDR1 immunoglobulin like domain containing receptor 1 2 2
MIRT538205 CYR61 cysteine rich angiogenic inducer 61 2 2
MIRT538419 COLEC10 collectin subfamily member 10 2 2
MIRT541964 ZNF485 zinc finger protein 485 2 2
MIRT543088 KNSTRN kinetochore localized astrin/SPAG5 binding protein 2 2
MIRT543257 ZNF662 zinc finger protein 662 2 2
MIRT543589 KIAA1549 KIAA1549 2 2
MIRT543955 RNF20 ring finger protein 20 2 2
MIRT544043 C9orf64 chromosome 9 open reading frame 64 2 4
MIRT548064 GIGYF1 GRB10 interacting GYF protein 1 2 2
MIRT548240 FBXW7 F-box and WD repeat domain containing 7 2 2
MIRT548442 EIF1AX eukaryotic translation initiation factor 1A, X-linked 2 2
MIRT548623 DAZAP1 DAZ associated protein 1 2 4
MIRT548770 COLEC12 collectin subfamily member 12 2 2
MIRT549506 HDDC2 HD domain containing 2 2 4
MIRT551924 AKAP8 A-kinase anchoring protein 8 2 4
MIRT555656 PGRMC1 progesterone receptor membrane component 1 2 2
MIRT556286 MAP3K5 mitogen-activated protein kinase kinase kinase 5 2 2
MIRT557012 HOXD13 homeobox D13 2 4
MIRT563907 CLSPN claspin 2 2
MIRT565527 SON SON DNA binding protein 2 2
MIRT568000 COMMD2 COMM domain containing 2 2 2
MIRT569831 PLA2G16 phospholipase A2 group XVI 2 4
MIRT573905 PARP1 poly(ADP-ribose) polymerase 1 2 2
MIRT616589 KLHL9 kelch like family member 9 2 2
MIRT617137 ZNF556 zinc finger protein 556 2 2
MIRT617400 API5 apoptosis inhibitor 5 2 2
MIRT617455 CCS copper chaperone for superoxide dismutase 2 2
MIRT617799 ZNF793 zinc finger protein 793 2 2
MIRT618190 MACC1 MACC1, MET transcriptional regulator 2 2
MIRT618303 GNE glucosamine (UDP-N-acetyl)-2-epimerase/N-acetylmannosamine kinase 2 2
MIRT618329 ZNF813 zinc finger protein 813 2 2
MIRT618820 PHF20 PHD finger protein 20 2 2
MIRT619153 PPDPF pancreatic progenitor cell differentiation and proliferation factor 2 2
MIRT619530 ZNF708 zinc finger protein 708 2 2
MIRT619849 KIR3DX1 killer cell immunoglobulin like receptor, three Ig domains X1 2 2
MIRT620806 SLC26A2 solute carrier family 26 member 2 2 2
MIRT621312 YIPF4 Yip1 domain family member 4 2 2
MIRT621358 GUCA1B guanylate cyclase activator 1B 2 2
MIRT621366 ART4 ADP-ribosyltransferase 4 (Dombrock blood group) 2 2
MIRT621547 ZMYM1 zinc finger MYM-type containing 1 2 2
MIRT621883 TAOK1 TAO kinase 1 2 2
MIRT622451 RNF19B ring finger protein 19B 2 2
MIRT623404 KREMEN1 kringle containing transmembrane protein 1 2 2
MIRT623587 IPO9 importin 9 2 2
MIRT623974 FAM63A MINDY lysine 48 deubiquitinase 1 2 2
MIRT624086 DPP8 dipeptidyl peptidase 8 2 2
MIRT624108 DNAH10OS dynein axonemal heavy chain 10 opposite strand 2 2
MIRT632486 RNF8 ring finger protein 8 2 2
MIRT634057 PLIN3 perilipin 3 2 2
MIRT634657 GDE1 glycerophosphodiester phosphodiesterase 1 2 2
MIRT640682 MCUR1 mitochondrial calcium uniporter regulator 1 2 2
MIRT641242 CENPN centromere protein N 2 2
MIRT642260 ZNF677 zinc finger protein 677 2 2
MIRT642954 RELA RELA proto-oncogene, NF-kB subunit 2 2
MIRT644326 IPP intracisternal A particle-promoted polypeptide 2 2
MIRT644632 ICA1L islet cell autoantigen 1 like 2 2
MIRT645721 POLR3A RNA polymerase III subunit A 2 2
MIRT647850 LYPLA1 lysophospholipase I 2 2
MIRT649281 NEK8 NIMA related kinase 8 2 2
MIRT650038 VHL von Hippel-Lindau tumor suppressor 2 2
MIRT650354 RRP36 ribosomal RNA processing 36 2 2
MIRT651144 ZNF384 zinc finger protein 384 2 2
MIRT651778 UTP6 UTP6, small subunit processome component 2 2
MIRT652576 TLCD2 TLC domain containing 2 2 2
MIRT654621 PTPRJ protein tyrosine phosphatase, receptor type J 2 2
MIRT656023 MYO5A myosin VA 2 2
MIRT656105 MSRB3 methionine sulfoxide reductase B3 2 2
MIRT657749 GMEB1 glucocorticoid modulatory element binding protein 1 2 2
MIRT657924 GATSL2 cytosolic arginine sensor for mTORC1 subunit 2 2 2
MIRT658848 DUSP19 dual specificity phosphatase 19 2 2
MIRT659100 DENND6A DENN domain containing 6A 2 2
MIRT659153 DCX doublecortin 2 2
MIRT660870 ADRBK2 G protein-coupled receptor kinase 3 2 2
MIRT661941 FAHD1 fumarylacetoacetate hydrolase domain containing 1 2 2
MIRT663577 C10orf32 BLOC-1 related complex subunit 7 2 2
MIRT664625 WDPCP WD repeat containing planar cell polarity effector 2 4
MIRT666562 RHOBTB3 Rho related BTB domain containing 3 2 2
MIRT669992 GPR156 G protein-coupled receptor 156 2 4
MIRT670445 RSBN1L round spermatid basic protein 1 like 2 2
MIRT670853 IFNAR1 interferon alpha and beta receptor subunit 1 2 4
MIRT671942 SPPL3 signal peptide peptidase like 3 2 2
MIRT674269 LMOD3 leiomodin 3 2 2
MIRT674424 MIOX myo-inositol oxygenase 2 4
MIRT674982 ATP5G1 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C1 (subunit 9) 2 2
MIRT675038 BACE2 beta-site APP-cleaving enzyme 2 2 4
MIRT675309 C2orf68 chromosome 2 open reading frame 68 2 2
MIRT675641 TTPAL alpha tocopherol transfer protein like 2 2
MIRT688688 CPS1 carbamoyl-phosphate synthase 1 2 2
MIRT689369 ZNF101 zinc finger protein 101 2 2
MIRT689605 AKAP6 A-kinase anchoring protein 6 2 2
MIRT691715 LARS leucyl-tRNA synthetase 2 2
MIRT695473 TRAT1 T-cell receptor associated transmembrane adaptor 1 2 2
MIRT695530 MAP4K2 mitogen-activated protein kinase kinase kinase kinase 2 2 2
MIRT695878 CACNG8 calcium voltage-gated channel auxiliary subunit gamma 8 2 2
MIRT696586 ORMDL2 ORMDL sphingolipid biosynthesis regulator 2 2 2
MIRT703007 HEATR5A HEAT repeat containing 5A 2 2
MIRT707942 PHKA1 phosphorylase kinase regulatory subunit alpha 1 2 2
MIRT709765 GPR183 G protein-coupled receptor 183 2 2
MIRT710332 ZNF669 zinc finger protein 669 2 2
MIRT713249 ZFP30 ZFP30 zinc finger protein 2 2
MIRT716613 RBM18 RNA binding motif protein 18 2 2
MIRT733414 BAG2 BCL2 associated athanogene 2 2 0
MIRT756135 THSD7A thrombospondin type 1 domain containing 7A 3 1
miRNA-Drug Associations
miRNA Small Melocule FDA CID Detection Method Condition PMID Year Expression Pattern of miRNA
miR-1 Anthocyanin NULL 145858 Microarray apoE−/− mice 22253797 2012 down-regulated
miR-1 Caffeic acid NULL 689043 Microarray apoE−/− mice 22253797 2012 down-regulated
miR-1 Catechin approved 9064 Microarray apoE−/− mice 22253797 2012 up-regulated
miR-1 Curcumin NULL 969516 Microarray apoE−/− mice 22253797 2012 down-regulated
miR-1 Ferulic acid NULL 445858 Microarray apoE−/− mice 22253797 2012 down-regulated
miR-1 Hesperidin NULL 10621 Microarray apoE−/− mice 22253797 2012 up-regulated
miR-1 Quercetin NULL 5280343 Microarray apoE−/− mice 22253797 2012 down-regulated
miR-1 Galactose NULL 6036 Quantitative real-time PCR lens 22736950 2012 up-regulated
miR-1 Hexahydro-1,3,5-trinitro-1,3,5-triazine (RDX) NULL 8490 Microarray mouse brain 19270793 2009 down-regulated
miR-1 Trichostatin A (TSA) NULL 444732 Quantitative real-time PCR myocardial differentiation of mouse ES cells 19521018 2009 down-regulated
miR-1 Sulfonyl-hydrazone-1 (SHZ) NULL NULL Quantitative real-time PCR Murine broblast-derived Induced pluripotent stem cells 21445862 2011 up-regulated
miR-1 Cocaine NULL 446220 Next-generation sequencing ventral striatum 21708909 2011 up-regulated
miR-1 Atorvastatin approved 60823 Quantitative real-time PCR Cardiomyocyte 23860036 2013 down-regualted
miR-1 Glucose NULL 5793 Quantitative real-time PCR endothelial cells 24394957 2014 down-regulated
miR-1 Docosahexaenoic acid NULL 445580 Quantitative real-time PCR Caco-2 cells 24623846 2014 up-regulated
miR-1 Palmitic acid approved 985 Quantitative real-time PCR Caco-2 cells 24623846 2014 up-regulated
miR-1 17beta-estradiol (E2) approved 5757 Microarray MCF-7AKT breast cancer cells 19528081 2009 down-regulated
miR-1 Essential amino acids (EAA) NULL NULL Quantitative real-time PCR skeletal muscle of young adults 19828686 2009 up-regulated
miR-1 Hydrogen peroxide (H2O2) NULL 784 Quantitative real-time PCR Human umbilical vein endothelial cells 21527937 2011 down-regulated
miR-1 Trichostatin A (TSA) NULL 444732 Microarray apoptosis-resistant breast cancer cells 21971930 2011 up-regulated
miR-1 Arsenic trioxide approved 14888 Quantitative real-time PCR acute promyelocytic leukemia 22072212 2012 up-regulated
miR-1 5-Fluorouracil approved 3385 Microarray CNE cells 22614822 2012 up-regulated
miR-1 Bicalutamide approved 2375 Microarray prostate 22674191 2012 up-regulated
miR-1 Arsenic trioxide approved 14888 Quantitative real-time PCR cardia 22889704 2012 up-regulated
miR-1 Perfluorooctane sulfonate NULL 74483 Microarray zebrafish embryos 20878907 2011 up-regulated
miR-1 Quinidine approved 441074 Quantitative real-time PCR myocardial infarction (MI) rats 19775284 2009 up-regulated
miR-1 Tanshinone IIA NULL 164676 Quantitative real-time PCR myocardial infarction (MI) rats 19775284 2009 down-regulated
miR-1 Tanshinone IIA NULL 164676 Quantitative real-time PCR post-infarction rat cardiomyocytes 21220930 2011 down-regulated
miR-1 Isoproterenol approved 3779 Quantitative real-time PCR heart 22847192 2012 down-regulated
miR-1 Dexamethasone approved 5743 Microarray adrenals and granulosa cells 24205079 2014 up-regulated
miR-1 Thiourea (TU) NULL 737139 Quantitative real-time PCR skeletal muscle and heart 22142802 2012 up-regulated
miR-1 Thiourea (TU) NULL 737139 Quantitative real-time PCR skeletal muscle and heart 22142802 2012 down-regulated
miR-1 Isoproterenol approved 3779 Quantitative real-time PCR heart 22847192 2012 up-regulated
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-1303 Oxaliplatin 6857599 NSC266046 approved sensitive High Colorectal Cancer cell line (RKO)
hsa-miR-1303 Oxaliplatin 6857599 NSC266046 approved resistant High Colorectal Cancer cell line (HT-29)
hsa-miR-1303 Imatinib 5291 NSC743414 approved sensitive High Gastrointestinal Stromal Tumor cell line (882R-NC, 882R-OE, 882R-KD)
hsa-miR-1303 Fulvestrant 17756771 NSC719276 approved sensitive High Breast Cancer cell line (MCF-7)
hsa-miR-1303 Rituximab sensitive High Diffuse Large B-Cell Lymphoma cell line (DB, NU-DHL-1, NU-DUL-1, MC-116, SU-DHL-4, SU-DHL-5, FARAGE, HBL-1, OCI-Ly3, OCI-Ly7, OCI-Ly8, OCI-Ly19, RIVA, SU-DHL-8, U2932)
hsa-miR-1303 Etoposide 36462 NSC141540 approved resistant High Colorectal Cancer cell line (HCT8)
hsa-miR-1303 Doxorubicin 31703 NSC123127 approved resistant High Colorectal Cancer cell line (HCT8)
hsa-miR-1303 Vinorelbine 44424639 approved resistant High Colorectal Cancer cell line (HCT8)
hsa-miR-1303 Vincristine 5978 approved resistant High Colorectal Cancer cell line (HCT8)
hsa-miR-1303 Paclitaxel 36314 NSC125973 approved resistant High Colorectal Cancer cell line (HCT8)
hsa-mir-1303 Dabrafenib 44462760 NSC764134 approved sensitive cell line (A375)
hsa-mir-1303 Cisplatin 5460033 NSC119875 approved resistant cell line (W1)
hsa-mir-1303 Topotecan 60699 NSC609699 approved resistant cell line (W1)
hsa-mir-1303 Androstenedione+Letrozole resistant cell line (MCF-7)
hsa-miR-1303 Gefitinib 123631 NSC715055 approved sensitive cell line (HCC827)
hsa-miR-1303 Osimertinib 71496458 NSC779217 approved sensitive cell line (HCC827)
hsa-miR-1303 Osimertinib 71496458 NSC779217 approved resistant cell line (PC9)
hsa-miR-1303 Vemurafenib 42611257 NSC761431 approved resistant cell line (451Lu)
hsa-miR-1303 Palbociclib 5330286 NSC758247 approved resistant tissue (breast cancer)
hsa-miR-1303 Cisplatin 5460033 NSC119875 approved sensitive cell line
hsa-miR-1303 Gefitinib 123631 NSC715055 approved sensitive cell line (HCC827)
hsa-miR-1303 Paclitaxel 36314 NSC125973 approved resistant cell line (BAS)
hsa-miR-1303 Doxorubicin 31703 NSC123127 approved resistant cell line (HS578T)
hsa-miR-1303 Cisplatin 5460033 NSC119875 approved resistant cell line (CP20)
hsa-miR-1303 Cisplatin 5460033 NSC119875 approved sensitive cell line (MGC-803)
hsa-miR-1303 Oxaliplatin 6857599 NSC266046 approved sensitive cell line (IGROV-1)
hsa-miR-1303 Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)

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