pre-miRNA Information
pre-miRNA hsa-mir-4419b   
Genomic Coordinates chr12: 128244506 - 128244573
Description Homo sapiens miR-4419b stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-4419b
Sequence 42| GAGGCUGAAGGAAGAUGG |59
Evidence Experimental
Experiments Illumina
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol FBXW8   
Synonyms FBW6, FBW8, FBX29, FBXO29, FBXW6
Description F-box and WD repeat domain containing 8
Transcript NM_012174   
Other Transcripts NM_153348   
Expression
Putative miRNA Targets on FBXW8
3'UTR of FBXW8
(miRNA target sites are highlighted)
>FBXW8|NM_012174|3'UTR
   1 GGATGTGCCTCAGTTGGGAGCAAGGAGAAAAATGGGAAGAACCAGTTTTATCCATCTTAAAACGCCAGGCACCTCTTCAC
  81 AGGTGGTAAACATTTAGGGGAAGAAAGCAGCCCAGGGTGCCATGCCTGACAGCACGCATCTCCCTGACCCCTGCACTTCC
 161 CCCAGCGCCTGGGGCAAGCTGGCGTGTGCCAGGGCTCGAGTCCCACGTGCTGCCAACTCAAACATAGCCTCCTTCCCCAC
 241 CCAGCTGGCCACCCTGGCCTCAGCTCCCTCAGGACGCCTCAGGGATCTCGCTGCGCGGTCCTATACGGTCCCTGCTTAGC
 321 CAGCTTCTGTGTGTCCGCCCTCCCAGCTCCAGCCCTGCAGGCCGTCTTTTCCGTCTCCAGCCCCTTACCTCTTTTCCTCC
 401 GAGGGCCTTTGGATGTGCTTGTTCCTGGCCTCCAAGGCAATAACCTCCATGTCCTTTTCCCTGTATTTACTTGGGGTGCT
 481 CTTCTGTGACACTTGCCACCACCACCTTCCAGTAGCAAGCTGGTAGAGCTGTACTTTTTCTTCACAGCTTTTACCATGGT
 561 TTATAATTATATACTTATACAGTTTAGTCATCAATGACTATTTTGCTTACTATTGTGTCTATGATATGTGATACAAAGCA
 641 AATATTTTCTAAATATTCATTGACTAAACAGCCATCAAGATGAAACAGGACAGGAGAGAACTGTTCAGTGTGATACAGAG
 721 CTGCCATTTCCAAAGTATTCTGGAAGCAAGCCATTGCCTTACTCTTGATTTTCAACAGTTCTAAACAGCAACAGCATCCA
 801 CCTAATATACCTTCAGAATATCAAAGCGAAAACTGATAGAACTACAAAGAGAAATAAAATCCATTCTCACGGCAGGCAAA
 881 TCAGTGAGAAAAATGTAAAGATCTGGAGGATTTACTTAGTATCGCTAACAAGCTGGATCCAGTAGATGCGTATGGAATTT
 961 CAAATACACATAGACGATGCACAAAAAACCACCCTGTACGAAGGCCACAAAGAACAGCTCAGATGCACAAAGATTCACAC
1041 CATACAGGCCAAATTATAGAATCCCCCAACCCCAAGACACTGCACCCTATGGGCTATACCCTCAGGCAGGGCCCTGCTTT
1121 TCTAGGAATTGACTCCAATGCAGAATAGTGAGAAATCAACAAAAAGCAAAATAAGACAATTCCAGACACTCCTGAATTTA
1201 CTTGGATTTAAAGAGGTTAATAAAAACAAACTATAAACTCTCTAGACTGGGCTGACAGTAAAAGCACAGAATACAAAACC
1281 CAGGGGATGGGGCTGGGAGGGGCTGTGAGGGGCTGGCACCTCAGCTCAGAAAAGGTAGCAGCAATCCCAAAGCAGCAGAA
1361 GGCAGGGGTTAAATCAGGATAAAAACAGACATCAGTGGAATCGAAAACCAATAGTTAGTTAATATAAAGCCAGAAGGTTT
1441 TGTTTTTTTTCAGGTGGGGTCTCGCTCTGTCACCTAGACTAGACTGGAGTGCAATGGCCTGATCTCGGCTCACTGCAACC
1521 TCTGCCTCCCGAGTTCAAGCAATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGCGTCCGCTACCACAACTGG
1601 CTAATTTTTACATTTTTAGTAGAGACGGGGGATATTGCTATGTTGGCCAGGCTGGTCTCAAACTTCTGACCTCAAATGAT
1681 TGCCTGCCTCAGCCTCCCAAAGTGCTGGGATTACAGGTGTAAGTCACTGTACCCAGCCCAAAAGCAGTTTAAAAAAAAAA
1761 AAGACAAAATATACAACTCTTGATAAAACATAAAGGTACAGTGGTCTATGAGGAAGAGAAAAGGTACCTGAGGATGCAGA
1841 AGTACCTACCACATGGGAACCGTTTGTCCACACTCATTCCAGAGAAAACCGAGTCCTCTCAGTTGCACACGTGTACGTAT
1921 CAGTGGGAAGTGCTTGCCATTACTCCAAAGCCTAGAACCTTCACGTCATGAAGGTTCTGGAAGGTTTTTCAGATTGCTTA
2001 AGATACGCAGCCATTCCATATTCATCTCCAACTACACAGGGGAACGGAGCAGATAGAGCTGCGACTGGGAAGCGTCACCT
2081 TCCCGTCCAGAGCGCTTTCTTTCAGACCCTGCCTACCTGCAGGCAGATGGACCGGAGGGTTTTCTGCTTCCTTTCAACCA
2161 GATAACTTCCTAAGTGGAGATGGCCTGTAGGTAGCAAATGCAGGATTTTGTTTACTTTCATCATGTCATGTGGTGGTCAG
2241 ACTGCTCGCTGGTGGCCTCGCTTTAGAAGGTTTTCATCAAGCCCCGCCCTTTCTCTCTCATAGTCTTAATGCGTCTGGAC
2321 CACTGGGGAAAATATTTTTCTTTTCAAAAAGCAGCCCCTTCAGTCTGCGTTCCCAGTTCATTTTGCAGGCGCATTCGCCC
2401 TTCCTAGTTTGCAGCAATTAAAGATAACGGAGTGTAAAGTCATTAGACCCAGAATTAGAGCAGCCAGCAGCTGGCCCAGT
2481 GTAAAAATGTCCCAAGTGTAGCCCCTCCCACCGCAGAGCCTGTTTCTAACGTACCTGCCATTCGTGGAAGTCGCCTGGGT
2561 TTTGTAAAGGAGAATTTTTTGGACTCAAGCTGTCATCTTCAAGCACGCCAACTTCAGGCAGTGTTTTCTACTGCAAACCT
2641 CCACATCCTGGAATCAATCACACTGACAGGGAAAGGATAAATGCTCCTTTATAAGCCAACATGTATCCAAATTAAGCCCC
2721 CTTACCTTTATCCAGACCCTTTCACAAACAAGTTCTGAGTTTTTAGCCAATTGATCCTCTACTTTCCTTCTTTAGTCCCT
2801 CTCAGGGACGCCTCCATCCCCGGCTCCCCTAAAGGTAGAAGATACTCGAGCATGCTGCCAGGGGAGCTGGATGGTGAAAC
2881 ACCTGAAGATCTCATATCGCCTCTCAAAACACTGTCGGACTTGCTTTCTGCTTTATGATGTCCGTAGTTGTTCTAATATT
2961 AAATGCTTTGAATTTCAAAAAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' ggUAGAAGGA---AGUCGGAg 5'
            ||: ||||   ||||||| 
Target 5' caATTCTCCTGCCTCAGCCTc 3'
1540 - 1560 156.00 -17.50
2
miRNA  3' gguaGAAGGAAGUCGGAg 5'
              || || ||||||| 
Target 5' ttgcCTGCC-TCAGCCTc 3'
1680 - 1696 149.00 -17.40
3
miRNA  3' gguagaaGGAAGUCGGAg 5'
                 |||||||:|| 
Target 5' agcagccCCTTCAGTCTg 3'
2350 - 2367 139.00 -14.60
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSM8233756 1 COSMIC
COSN17153827 5 COSMIC
COSN30479138 12 COSMIC
COSN30499507 21 COSMIC
COSN30162423 46 COSMIC
COSN30463732 54 COSMIC
COSN30155846 79 COSMIC
COSN16054676 103 COSMIC
COSN26110891 136 COSMIC
COSN30720922 137 COSMIC
COSN7312221 164 COSMIC
COSN17006578 295 COSMIC
COSN7609524 528 COSMIC
COSN20092657 535 COSMIC
COSN19582631 688 COSMIC
COSN21602396 788 COSMIC
COSN22641207 871 COSMIC
COSN27141620 904 COSMIC
COSN7609525 995 COSMIC
COSN20110175 1243 COSMIC
COSN29893711 1308 COSMIC
COSN1142929 1356 COSMIC
COSN29653198 1451 COSMIC
COSN1558952 1532 COSMIC
COSN8696916 1751 COSMIC
COSN31992555 1762 COSMIC
COSN28974621 1763 COSMIC
COSN24266446 1880 COSMIC
COSN29734958 2224 COSMIC
COSN17183200 2314 COSMIC
COSN14910505 2429 COSMIC
COSN4727036 2532 COSMIC
COSN24042181 2616 COSMIC
COSN32058727 2618 COSMIC
COSN15660730 2804 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs879045585 1 dbSNP
rs577786272 4 dbSNP
rs2291916 5 dbSNP
rs765428598 6 dbSNP
rs1180099144 11 dbSNP
rs112645598 12 dbSNP
rs773270176 12 dbSNP
rs1287575517 13 dbSNP
rs758410537 14 dbSNP
rs1230071457 19 dbSNP
rs1424406612 21 dbSNP
rs1288710158 22 dbSNP
rs1355262122 25 dbSNP
rs1207648463 28 dbSNP
rs1291440382 34 dbSNP
rs372402119 35 dbSNP
rs932262599 40 dbSNP
rs751737774 43 dbSNP
rs1251803827 44 dbSNP
rs1471895094 46 dbSNP
rs763521703 46 dbSNP
rs147585785 52 dbSNP
rs889473947 54 dbSNP
rs1488047207 57 dbSNP
rs946372240 58 dbSNP
rs142018002 64 dbSNP
rs150036359 65 dbSNP
rs2291915 68 dbSNP
rs1337520089 84 dbSNP
rs538481783 85 dbSNP
rs1406420335 87 dbSNP
rs920966203 98 dbSNP
rs896312447 101 dbSNP
rs759982690 104 dbSNP
rs1435018525 111 dbSNP
rs1402885588 112 dbSNP
rs1023531954 113 dbSNP
rs532041243 116 dbSNP
rs1471371969 118 dbSNP
rs1364695502 127 dbSNP
rs2291914 136 dbSNP
rs1015033261 137 dbSNP
rs1211683763 141 dbSNP
rs1488110551 153 dbSNP
rs962089760 158 dbSNP
rs1282398651 159 dbSNP
rs1207071323 165 dbSNP
rs987423451 167 dbSNP
rs187246129 168 dbSNP
rs1366487503 170 dbSNP
rs1294637225 172 dbSNP
rs1414838835 173 dbSNP
rs976159570 182 dbSNP
rs371150811 185 dbSNP
rs374595037 187 dbSNP
rs1315818139 198 dbSNP
rs527915331 199 dbSNP
rs1402020472 202 dbSNP
rs912825576 204 dbSNP
rs1164648608 205 dbSNP
rs923475480 207 dbSNP
rs953554481 208 dbSNP
rs986816883 209 dbSNP
rs1375633221 213 dbSNP
rs1225342626 222 dbSNP
rs989017051 231 dbSNP
rs1307652709 238 dbSNP
rs1320856032 239 dbSNP
rs914802119 240 dbSNP
rs946404773 256 dbSNP
rs1220036608 261 dbSNP
rs1268600172 262 dbSNP
rs1212804987 266 dbSNP
rs914625867 267 dbSNP
rs547464609 272 dbSNP
rs1490430734 276 dbSNP
rs189705144 277 dbSNP
rs1230619848 279 dbSNP
rs35059533 282 dbSNP
rs1043333464 290 dbSNP
rs1044370579 291 dbSNP
rs1470892769 291 dbSNP
rs118100421 295 dbSNP
rs182204362 296 dbSNP
rs556533642 297 dbSNP
rs186891107 298 dbSNP
rs1166328047 301 dbSNP
rs1004437514 305 dbSNP
rs1012066411 307 dbSNP
rs1045398814 308 dbSNP
rs1475886418 314 dbSNP
rs1252585270 324 dbSNP
rs1191927574 328 dbSNP
rs575265909 337 dbSNP
rs995295518 338 dbSNP
rs1356312629 340 dbSNP
rs1222240715 343 dbSNP
rs1028080709 364 dbSNP
rs953663718 365 dbSNP
rs1215784997 373 dbSNP
rs986500703 374 dbSNP
rs117547175 376 dbSNP
rs1378421518 378 dbSNP
rs1243492580 381 dbSNP
rs1326980222 383 dbSNP
rs1014969359 386 dbSNP
rs1353234835 389 dbSNP
rs1316810038 392 dbSNP
rs1472364046 392 dbSNP
rs1359907164 393 dbSNP
rs557951388 398 dbSNP
rs1172007885 399 dbSNP
rs577894561 401 dbSNP
rs540459883 402 dbSNP
rs1030403943 406 dbSNP
rs575068135 417 dbSNP
rs149222502 418 dbSNP
rs1480293179 426 dbSNP
rs1231084086 434 dbSNP
rs1206481874 437 dbSNP
rs1483115893 441 dbSNP
rs763791199 442 dbSNP
rs753605560 462 dbSNP
rs542217144 474 dbSNP
rs1231643465 483 dbSNP
rs1237403004 491 dbSNP
rs968907503 494 dbSNP
rs1349594581 496 dbSNP
rs947559672 504 dbSNP
rs977634135 505 dbSNP
rs1460316600 513 dbSNP
rs761710901 521 dbSNP
rs114599061 524 dbSNP
rs1311136052 527 dbSNP
rs192507757 527 dbSNP
rs1436894144 529 dbSNP
rs1449273671 540 dbSNP
rs927396107 546 dbSNP
rs938659394 557 dbSNP
rs1057157358 563 dbSNP
rs1405474288 565 dbSNP
rs1472844834 570 dbSNP
rs750330221 570 dbSNP
rs1256272468 572 dbSNP
rs1460443325 576 dbSNP
rs141514982 577 dbSNP
rs555039290 577 dbSNP
rs34017002 579 dbSNP
rs917643651 581 dbSNP
rs1410592142 582 dbSNP
rs79978019 586 dbSNP
rs898293875 595 dbSNP
rs1309526086 606 dbSNP
rs1044863814 613 dbSNP
rs1476212241 615 dbSNP
rs1450286512 624 dbSNP
rs1291562807 627 dbSNP
rs1338648037 628 dbSNP
rs1028051240 650 dbSNP
rs1383207138 655 dbSNP
rs1434148417 656 dbSNP
rs887604081 665 dbSNP
rs889561821 666 dbSNP
rs565266247 667 dbSNP
rs1341112542 671 dbSNP
rs1214646659 679 dbSNP
rs560732035 681 dbSNP
rs1320826274 683 dbSNP
rs1417048917 696 dbSNP
rs1185645722 697 dbSNP
rs1019310423 727 dbSNP
rs1256159082 732 dbSNP
rs956485959 734 dbSNP
rs1185583261 748 dbSNP
rs1006183553 752 dbSNP
rs527878034 768 dbSNP
rs1244336440 776 dbSNP
rs1021838465 777 dbSNP
rs1036263909 782 dbSNP
rs1271854204 784 dbSNP
rs980258545 789 dbSNP
rs897858424 797 dbSNP
rs1341149369 802 dbSNP
rs148323436 803 dbSNP
rs1294876651 809 dbSNP
rs757616645 809 dbSNP
rs997497881 811 dbSNP
rs927363416 819 dbSNP
rs1464709861 828 dbSNP
rs547626700 829 dbSNP
rs116875939 833 dbSNP
rs750913831 834 dbSNP
rs889169121 838 dbSNP
rs1475826661 839 dbSNP
rs1190843095 840 dbSNP
rs1368596027 840 dbSNP
rs767638133 840 dbSNP
rs1169125175 843 dbSNP
rs1427231965 844 dbSNP
rs1426414367 847 dbSNP
rs907910609 857 dbSNP
rs1188749860 865 dbSNP
rs530218146 871 dbSNP
rs968855197 872 dbSNP
rs1036917932 886 dbSNP
rs1406803375 891 dbSNP
rs977666853 893 dbSNP
rs752891808 894 dbSNP
rs931114207 896 dbSNP
rs1309281946 898 dbSNP
rs1327989859 901 dbSNP
rs1440359745 905 dbSNP
rs1031868384 918 dbSNP
rs1369990511 920 dbSNP
rs956584757 922 dbSNP
rs1323624385 925 dbSNP
rs1282274070 926 dbSNP
rs540924460 940 dbSNP
rs889523187 944 dbSNP
rs368950928 945 dbSNP
rs539072069 950 dbSNP
rs558060187 951 dbSNP
rs778192142 953 dbSNP
rs891426221 955 dbSNP
rs1168844504 962 dbSNP
rs980929521 963 dbSNP
rs1195891079 964 dbSNP
rs1393720979 964 dbSNP
rs1286853747 965 dbSNP
rs1010329312 972 dbSNP
rs1250462976 972 dbSNP
rs1481660653 976 dbSNP
rs372877140 976 dbSNP
rs941832156 977 dbSNP
rs1036294611 981 dbSNP
rs1266987844 983 dbSNP
rs533964163 991 dbSNP
rs1301027956 993 dbSNP
rs368112159 1000 dbSNP
rs532463416 1001 dbSNP
rs1429908382 1003 dbSNP
rs1328138742 1006 dbSNP
rs868294266 1011 dbSNP
rs968966499 1013 dbSNP
rs749500852 1019 dbSNP
rs1001645785 1020 dbSNP
rs933320214 1024 dbSNP
rs757596672 1025 dbSNP
rs1373209507 1037 dbSNP
rs185714182 1041 dbSNP
rs1478577782 1042 dbSNP
rs547699457 1043 dbSNP
rs1363268193 1048 dbSNP
rs188495387 1052 dbSNP
rs1180303915 1062 dbSNP
rs77013969 1067 dbSNP
rs1051877 1068 dbSNP
rs536367930 1073 dbSNP
rs1421380804 1076 dbSNP
rs1007681829 1082 dbSNP
rs143385427 1084 dbSNP
rs1484844184 1086 dbSNP
rs575611436 1088 dbSNP
rs757591707 1090 dbSNP
rs1410689333 1091 dbSNP
rs1278679283 1092 dbSNP
rs1236865100 1095 dbSNP
rs1334647732 1100 dbSNP
rs1352252729 1108 dbSNP
rs919826657 1112 dbSNP
rs779158492 1114 dbSNP
rs1373053795 1115 dbSNP
rs1335785643 1117 dbSNP
rs1414624795 1118 dbSNP
rs1384768189 1129 dbSNP
rs1157183922 1134 dbSNP
rs1049586770 1139 dbSNP
rs78634218 1140 dbSNP
rs572414682 1147 dbSNP
rs1040769490 1148 dbSNP
rs1051879 1149 dbSNP
rs1188528775 1158 dbSNP
rs1446624662 1172 dbSNP
rs369390957 1176 dbSNP
rs1283379643 1183 dbSNP
rs1203128384 1188 dbSNP
rs992240324 1192 dbSNP
rs1331203708 1193 dbSNP
rs1268726680 1204 dbSNP
rs1024683973 1205 dbSNP
rs36097176 1214 dbSNP
rs1232532890 1222 dbSNP
rs11068295 1223 dbSNP
rs1285434895 1229 dbSNP
rs148663293 1238 dbSNP
rs980548712 1239 dbSNP
rs1316740178 1241 dbSNP
rs1437757323 1248 dbSNP
rs908933431 1248 dbSNP
rs941861651 1249 dbSNP
rs971852754 1257 dbSNP
rs1223490387 1265 dbSNP
rs904776035 1266 dbSNP
rs530105792 1268 dbSNP
rs1460287630 1269 dbSNP
rs1436126366 1271 dbSNP
rs919185318 1275 dbSNP
rs1416127082 1279 dbSNP
rs774964294 1280 dbSNP
rs1475233165 1281 dbSNP
rs1240554477 1283 dbSNP
rs1365419396 1283 dbSNP
rs1466089775 1285 dbSNP
rs1248349623 1287 dbSNP
rs1213054074 1288 dbSNP
rs534188428 1289 dbSNP
rs58760793 1289 dbSNP
rs746568026 1292 dbSNP
rs1228369845 1294 dbSNP
rs1052112771 1297 dbSNP
rs1338117206 1297 dbSNP
rs540604449 1307 dbSNP
rs1366400472 1309 dbSNP
rs1325639891 1329 dbSNP
rs943351934 1348 dbSNP
rs1426225347 1355 dbSNP
rs1303355886 1365 dbSNP
rs1034569723 1368 dbSNP
rs192906354 1386 dbSNP
rs532545729 1395 dbSNP
rs11068296 1396 dbSNP
rs1450309868 1402 dbSNP
rs1390630339 1403 dbSNP
rs1014989998 1412 dbSNP
rs962466412 1412 dbSNP
rs1248404314 1415 dbSNP
rs1222161073 1416 dbSNP
rs973391839 1419 dbSNP
rs1271792153 1420 dbSNP
rs1027694281 1429 dbSNP
rs1336807351 1430 dbSNP
rs1245703388 1434 dbSNP
rs1303182526 1435 dbSNP
rs1313457802 1437 dbSNP
rs184750987 1439 dbSNP
rs953361549 1440 dbSNP
rs1232524952 1443 dbSNP
rs998979350 1446 dbSNP
rs534083758 1455 dbSNP
rs1442037560 1458 dbSNP
rs1053181399 1459 dbSNP
rs879876573 1460 dbSNP
rs115308768 1464 dbSNP
rs1014533330 1465 dbSNP
rs1171954118 1468 dbSNP
rs1431257977 1471 dbSNP
rs1023628029 1474 dbSNP
rs1469554815 1482 dbSNP
rs1249074831 1483 dbSNP
rs1206643019 1488 dbSNP
rs531713610 1490 dbSNP
rs1001846461 1493 dbSNP
rs1016025021 1507 dbSNP
rs560517924 1508 dbSNP
rs1223781316 1513 dbSNP
rs1349140298 1517 dbSNP
rs963090786 1521 dbSNP
rs1410536574 1525 dbSNP
rs1354854546 1528 dbSNP
rs188488046 1529 dbSNP
rs1467724770 1530 dbSNP
rs191800411 1531 dbSNP
rs1182897944 1532 dbSNP
rs1241094523 1534 dbSNP
rs1409634148 1539 dbSNP
rs1446196443 1543 dbSNP
rs1163861021 1545 dbSNP
rs1472652298 1565 dbSNP
rs1256122917 1574 dbSNP
rs1179814708 1578 dbSNP
rs548521684 1579 dbSNP
rs575773780 1583 dbSNP
rs776310090 1584 dbSNP
rs987433791 1587 dbSNP
rs761396941 1588 dbSNP
rs568102376 1597 dbSNP
rs1334279998 1603 dbSNP
rs1310649794 1611 dbSNP
rs1398080034 1612 dbSNP
rs1380126229 1613 dbSNP
rs1303263258 1621 dbSNP
rs1429798092 1628 dbSNP
rs1386134165 1632 dbSNP
rs527710069 1639 dbSNP
rs1457690331 1640 dbSNP
rs943388965 1641 dbSNP
rs1162054774 1650 dbSNP
rs538207943 1656 dbSNP
rs1256444161 1669 dbSNP
rs1185528398 1676 dbSNP
rs1463824258 1683 dbSNP
rs1250223526 1688 dbSNP
rs1209968992 1693 dbSNP
rs866398118 1694 dbSNP
rs1468427446 1697 dbSNP
rs866714176 1703 dbSNP
rs558133884 1720 dbSNP
rs1247057622 1728 dbSNP
rs546476226 1729 dbSNP
rs1322354808 1730 dbSNP
rs1385481791 1732 dbSNP
rs1226376968 1737 dbSNP
rs1362835016 1742 dbSNP
rs1453776684 1750 dbSNP
rs112066960 1751 dbSNP
rs1291660730 1751 dbSNP
rs1435774691 1751 dbSNP
rs572380572 1751 dbSNP
rs772891707 1752 dbSNP
rs1169322669 1762 dbSNP
rs896016690 1762 dbSNP
rs1014810954 1763 dbSNP
rs1392491226 1763 dbSNP
rs139700589 1773 dbSNP
rs1468467680 1775 dbSNP
rs1265909194 1777 dbSNP
rs371676447 1781 dbSNP
rs1229882499 1784 dbSNP
rs943862262 1786 dbSNP
rs977016329 1790 dbSNP
rs541728889 1791 dbSNP
rs1203361750 1801 dbSNP
rs1044671323 1805 dbSNP
rs1252025772 1809 dbSNP
rs138828354 1812 dbSNP
rs1203003365 1813 dbSNP
rs1330252844 1814 dbSNP
rs1299105484 1817 dbSNP
rs1001879014 1826 dbSNP
rs1390897868 1834 dbSNP
rs1306870356 1845 dbSNP
rs904160052 1847 dbSNP
rs1462502393 1852 dbSNP
rs1182170316 1854 dbSNP
rs937017814 1855 dbSNP
rs1477923763 1856 dbSNP
rs1376216633 1857 dbSNP
rs574956301 1858 dbSNP
rs543702986 1863 dbSNP
rs766483981 1869 dbSNP
rs963036700 1882 dbSNP
rs1434250764 1892 dbSNP
rs752803850 1895 dbSNP
rs1180076328 1901 dbSNP
rs538802315 1907 dbSNP
rs1275656208 1909 dbSNP
rs563760399 1911 dbSNP
rs954581828 1912 dbSNP
rs1174941152 1913 dbSNP
rs1344046995 1917 dbSNP
rs756305382 1918 dbSNP
rs910470174 1927 dbSNP
rs1254010856 1928 dbSNP
rs1470511460 1934 dbSNP
rs964562879 1937 dbSNP
rs1015539894 1940 dbSNP
rs764289145 1944 dbSNP
rs1296523918 1956 dbSNP
rs183621613 1965 dbSNP
rs934650943 1966 dbSNP
rs1413499250 1967 dbSNP
rs552555113 1972 dbSNP
rs1281309552 1974 dbSNP
rs1211386161 1978 dbSNP
rs1027748279 1984 dbSNP
rs375898221 1985 dbSNP
rs1411900025 1994 dbSNP
rs1467043701 1994 dbSNP
rs140507004 2007 dbSNP
rs917300059 2008 dbSNP
rs527555994 2012 dbSNP
rs1259983792 2017 dbSNP
rs1187573761 2020 dbSNP
rs1440904010 2021 dbSNP
rs1253867904 2029 dbSNP
rs950248890 2031 dbSNP
rs1484755721 2032 dbSNP
rs1018173426 2038 dbSNP
rs1206564308 2039 dbSNP
rs1263397784 2042 dbSNP
rs547653745 2046 dbSNP
rs567497551 2047 dbSNP
rs1196568500 2051 dbSNP
rs976605431 2053 dbSNP
rs1044925850 2055 dbSNP
rs1481085108 2057 dbSNP
rs1338311184 2063 dbSNP
rs906023475 2064 dbSNP
rs941633506 2068 dbSNP
rs1038612261 2070 dbSNP
rs370280395 2072 dbSNP
rs898859499 2074 dbSNP
rs993133628 2075 dbSNP
rs1459271636 2082 dbSNP
rs145735897 2086 dbSNP
rs78165968 2089 dbSNP
rs1289691142 2092 dbSNP
rs925719730 2094 dbSNP
rs1461610273 2095 dbSNP
rs188323992 2095 dbSNP
rs1403185868 2097 dbSNP
rs558475582 2108 dbSNP
rs1346213829 2116 dbSNP
rs1219787467 2119 dbSNP
rs896059475 2122 dbSNP
rs1466197931 2134 dbSNP
rs138329489 2135 dbSNP
rs1227262847 2140 dbSNP
rs978678753 2151 dbSNP
rs1032863789 2157 dbSNP
rs746272167 2162 dbSNP
rs897961542 2170 dbSNP
rs995016927 2173 dbSNP
rs1027715736 2177 dbSNP
rs1490104528 2181 dbSNP
rs1318952026 2197 dbSNP
rs758877486 2202 dbSNP
rs1219783024 2212 dbSNP
rs1323422017 2216 dbSNP
rs989182064 2221 dbSNP
rs917350006 2224 dbSNP
rs1270474471 2227 dbSNP
rs889227687 2230 dbSNP
rs1007546879 2246 dbSNP
rs1177166959 2249 dbSNP
rs1406361851 2253 dbSNP
rs568895085 2260 dbSNP
rs980210207 2262 dbSNP
rs1421262154 2265 dbSNP
rs927467720 2270 dbSNP
rs965321439 2271 dbSNP
rs1220648670 2275 dbSNP
rs1449391214 2276 dbSNP
rs1384997964 2278 dbSNP
rs941494517 2279 dbSNP
rs558099238 2281 dbSNP
rs1295927015 2283 dbSNP
rs780576868 2287 dbSNP
rs747547263 2291 dbSNP
rs1020210828 2292 dbSNP
rs140231738 2292 dbSNP
rs182233901 2293 dbSNP
rs897386347 2308 dbSNP
rs978585444 2309 dbSNP
rs1351750845 2312 dbSNP
rs1324282120 2313 dbSNP
rs925690583 2314 dbSNP
rs768107982 2319 dbSNP
rs776018688 2324 dbSNP
rs958481624 2327 dbSNP
rs928989740 2338 dbSNP
rs1170670895 2342 dbSNP
rs1431400792 2355 dbSNP
rs141869018 2363 dbSNP
rs890119786 2366 dbSNP
rs1476997263 2369 dbSNP
rs200068718 2370 dbSNP
rs150568749 2376 dbSNP
rs1482415936 2380 dbSNP
rs900357994 2384 dbSNP
rs1036992918 2385 dbSNP
rs1272081582 2387 dbSNP
rs2242469 2391 dbSNP
rs554753697 2396 dbSNP
rs532424629 2397 dbSNP
rs187197794 2398 dbSNP
rs988738524 2411 dbSNP
rs1278351862 2412 dbSNP
rs1218054468 2426 dbSNP
rs138569917 2429 dbSNP
rs559919915 2430 dbSNP
rs1409317461 2431 dbSNP
rs376985218 2435 dbSNP
rs971405494 2437 dbSNP
rs1310095290 2441 dbSNP
rs1410651618 2443 dbSNP
rs1354961978 2444 dbSNP
rs980620646 2449 dbSNP
rs114608549 2459 dbSNP
rs1040463887 2467 dbSNP
rs1179795673 2475 dbSNP
rs1248911777 2494 dbSNP
rs1183977516 2495 dbSNP
rs541899645 2497 dbSNP
rs974197039 2505 dbSNP
rs149333840 2509 dbSNP
rs1237310216 2511 dbSNP
rs1443126991 2513 dbSNP
rs1009585915 2514 dbSNP
rs1020136083 2516 dbSNP
rs1264306724 2521 dbSNP
rs967292150 2526 dbSNP
rs1327230898 2530 dbSNP
rs529949316 2531 dbSNP
rs1051349303 2532 dbSNP
rs1409461426 2537 dbSNP
rs1445581872 2539 dbSNP
rs766391042 2544 dbSNP
rs991610601 2545 dbSNP
rs944360586 2552 dbSNP
rs117095246 2553 dbSNP
rs1160706245 2554 dbSNP
rs774379250 2556 dbSNP
rs1412655389 2557 dbSNP
rs1381810828 2559 dbSNP
rs900222498 2564 dbSNP
rs1484448373 2566 dbSNP
rs1244110519 2571 dbSNP
rs759556667 2573 dbSNP
rs116846322 2580 dbSNP
rs1270146837 2585 dbSNP
rs1239888116 2589 dbSNP
rs58950740 2604 dbSNP
rs532210789 2607 dbSNP
rs551835501 2608 dbSNP
rs1230183374 2609 dbSNP
rs1384797933 2618 dbSNP
rs34142516 2624 dbSNP
rs891625804 2625 dbSNP
rs1434337561 2627 dbSNP
rs1386336545 2630 dbSNP
rs1270339565 2632 dbSNP
rs1322409376 2637 dbSNP
rs1010594546 2640 dbSNP
rs910685037 2645 dbSNP
rs1199863355 2646 dbSNP
rs1162324349 2650 dbSNP
rs1263016149 2654 dbSNP
rs1386289624 2662 dbSNP
rs1460274060 2666 dbSNP
rs943559170 2668 dbSNP
rs1447988919 2669 dbSNP
rs550112890 2672 dbSNP
rs146791294 2679 dbSNP
rs1488206681 2682 dbSNP
rs1224143931 2692 dbSNP
rs753928400 2695 dbSNP
rs565486083 2702 dbSNP
rs1184978759 2703 dbSNP
rs1434455050 2708 dbSNP
rs1362723398 2714 dbSNP
rs1297651292 2717 dbSNP
rs1009966430 2718 dbSNP
rs1042402676 2720 dbSNP
rs971816219 2727 dbSNP
rs1291257833 2731 dbSNP
rs1466170769 2737 dbSNP
rs1167526004 2747 dbSNP
rs1428229391 2750 dbSNP
rs903104410 2752 dbSNP
rs1001517903 2753 dbSNP
rs772984121 2754 dbSNP
rs1265410811 2756 dbSNP
rs1000028194 2764 dbSNP
rs1490520808 2766 dbSNP
rs1274232968 2772 dbSNP
rs144602646 2775 dbSNP
rs1405189466 2780 dbSNP
rs111368272 2787 dbSNP
rs1034434601 2790 dbSNP
rs1359510687 2798 dbSNP
rs1012770024 2807 dbSNP
rs1228110492 2810 dbSNP
rs1024455468 2811 dbSNP
rs1299042088 2817 dbSNP
rs762081094 2819 dbSNP
rs971716858 2820 dbSNP
rs1026025633 2821 dbSNP
rs74819990 2822 dbSNP
rs985008111 2823 dbSNP
rs190123573 2824 dbSNP
rs943512246 2828 dbSNP
rs951560071 2829 dbSNP
rs987473984 2831 dbSNP
rs1480809454 2832 dbSNP
rs1251149818 2848 dbSNP
rs912791489 2849 dbSNP
rs1446755798 2852 dbSNP
rs1196182611 2861 dbSNP
rs181770507 2864 dbSNP
rs1343978757 2867 dbSNP
rs1254179394 2868 dbSNP
rs944374488 2870 dbSNP
rs923339903 2873 dbSNP
rs1038641544 2874 dbSNP
rs1478197708 2876 dbSNP
rs186218647 2877 dbSNP
rs935793401 2882 dbSNP
rs577496123 2884 dbSNP
rs1395845555 2890 dbSNP
rs1400433290 2894 dbSNP
rs1339335806 2896 dbSNP
rs10774898 2897 dbSNP
rs891653897 2900 dbSNP
rs1402691767 2901 dbSNP
rs1399852610 2913 dbSNP
rs1315808425 2917 dbSNP
rs1471171728 2917 dbSNP
rs1010041173 2918 dbSNP
rs1187024155 2921 dbSNP
rs1441645894 2934 dbSNP
rs903827263 2942 dbSNP
rs139495224 2944 dbSNP
rs372826386 2945 dbSNP
rs894415611 2948 dbSNP
rs576225075 2954 dbSNP
rs79282036 2956 dbSNP
rs1352165935 2960 dbSNP
rs1013149691 2965 dbSNP
rs1001541912 2969 dbSNP
rs906944935 2971 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HEK293S
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in GSM1084072. RNA binding protein: AGO2. Condition:CLIP_nohippuristanol_rep1_AbnovaAb ...

- Karginov FV; Hannon GJ, 2013, Genes & development.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' gguaGAAGGAAGUCGGAg 5'
              || || ||||||| 
Target 5' uugcCUGCC-UCAGCCUc 3'
7 - 23
Article - Karginov FV; Hannon GJ
- Genes & development, 2013
When adapting to environmental stress, cells attenuate and reprogram their translational output. In part, these altered translation profiles are established through changes in the interactions between RNA-binding proteins and mRNAs. The Argonaute 2 (Ago2)/microRNA (miRNA) machinery has been shown to participate in stress-induced translational up-regulation of a particular mRNA, CAT-1; however, a detailed, transcriptome-wide understanding of the involvement of Ago2 in the process has been lacking. Here, we profiled the overall changes in Ago2-mRNA interactions upon arsenite stress by cross-linking immunoprecipitation (CLIP) followed by high-throughput sequencing (CLIP-seq). Ago2 displayed a significant remodeling of its transcript occupancy, with the majority of 3' untranslated region (UTR) and coding sequence (CDS) sites exhibiting stronger interaction. Interestingly, target sites that were destined for release from Ago2 upon stress were depleted in miRNA complementarity signatures, suggesting an alternative mode of interaction. To compare the changes in Ago2-binding patterns across transcripts with changes in their translational states, we measured mRNA profiles on ribosome/polysome gradients by RNA sequencing (RNA-seq). Increased Ago2 occupancy correlated with stronger repression of translation for those mRNAs, as evidenced by a shift toward lighter gradient fractions upon stress, while release of Ago2 was associated with the limited number of transcripts that remained translated. Taken together, these data point to a role for Ago2 and the mammalian miRNAs in mediating the translational component of the stress response.
LinkOut: [PMID: 23824327]
CLIP-seq Support 1 for dataset GSM4903833
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_a
Location of target site NM_012174 | 3UTR | CAACCUCUGCCUCCCGAGUUCAAGCAAUUCUCCUGCCUCAGCCUCCUGAGUAGCUGGGAUUACAGGCGU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM4903834
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_b
Location of target site NM_012174 | 3UTR | CUCAGCCUCCUGAGUAGCUGGGAUUACAGGCGU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 3 for dataset GSM4903835
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_c
Location of target site NM_012174 | 3UTR | ACUGCAACCUCUGCCUCCCGAGUUCAAGCAAUUCUCCUGCCUCAGCCUCCUGAGUAGCUGGGAUUACAGGCGU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 4 for dataset GSM4903836
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / 124_TD_21_a
Location of target site NM_153348 | 3UTR | UCCCGAGUUCAAGCAAUUCUCCUGCCUCAGCCUCCUGAGUAGCUGGGAUUACAG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 5 for dataset GSM4903837
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / 124_TD_21_b
Location of target site NM_012174 | 3UTR | AGCCUCCUGAGUAGCUGGGAUUACAG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 6 for dataset GSM4903838
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / 124_TD_21_c
Location of target site NM_153348 | 3UTR | UGCAACCUCUGCCUCCCGAGUUCAAGCAAUUCUCCUGCCUCAGCCUCCUGAGUAGCUGGGAUUACAGGCGU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 7 for dataset GSM1084072
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_nohippuristanol_rep1_AbnovaAb
Location of target site ENST00000455858.2 | 3UTR | AAAUGAUUGCCUGCCUCAGCCUCCC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
390 hsa-miR-4419b Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT061343 WEE1 WEE1 G2 checkpoint kinase 2 4
MIRT072743 GLCE glucuronic acid epimerase 2 2
MIRT180549 TXNIP thioredoxin interacting protein 2 2
MIRT186147 ALG10B ALG10B, alpha-1,2-glucosyltransferase 2 2
MIRT271044 PGAM5 PGAM family member 5, mitochondrial serine/threonine protein phosphatase 2 4
MIRT334761 PPP1R15B protein phosphatase 1 regulatory subunit 15B 2 6
MIRT443279 TSPAN15 tetraspanin 15 2 2
MIRT447047 ZNF439 zinc finger protein 439 2 2
MIRT447351 KIF6 kinesin family member 6 2 2
MIRT448925 CKS1B CDC28 protein kinase regulatory subunit 1B 2 2
MIRT452899 PSD4 pleckstrin and Sec7 domain containing 4 2 2
MIRT453087 SUMF2 sulfatase modifying factor 2 2 2
MIRT454071 SLC35E3 solute carrier family 35 member E3 2 2
MIRT456216 LIX1L limb and CNS expressed 1 like 2 6
MIRT456951 LRP10 LDL receptor related protein 10 2 2
MIRT458025 MRPL12 mitochondrial ribosomal protein L12 2 2
MIRT459999 RFT1 RFT1 homolog 2 2
MIRT460046 CDCP1 CUB domain containing protein 1 2 2
MIRT460982 STK17B serine/threonine kinase 17b 2 2
MIRT464405 URM1 ubiquitin related modifier 1 2 2
MIRT466256 TMBIM6 transmembrane BAX inhibitor motif containing 6 2 2
MIRT466536 TBXA2R thromboxane A2 receptor 2 2
MIRT470922 PLD5 phospholipase D family member 5 2 8
MIRT472835 MTMR10 myotubularin related protein 10 2 6
MIRT473352 MEMO1 mediator of cell motility 1 2 2
MIRT475504 HSP90B1 heat shock protein 90 beta family member 1 2 2
MIRT478862 CRISPLD2 cysteine rich secretory protein LCCL domain containing 2 2 2
MIRT480898 BCL9L B-cell CLL/lymphoma 9 like 2 2
MIRT482686 NXN nucleoredoxin 2 4
MIRT484128 C14orf142 GON7, KEOPS complex subunit homolog 2 2
MIRT486172 TLE3 transducin like enhancer of split 3 2 4
MIRT486539 CLCN7 chloride voltage-gated channel 7 2 2
MIRT486588 ZNF619 zinc finger protein 619 2 2
MIRT495475 ALDOA aldolase, fructose-bisphosphate A 2 2
MIRT495536 TXNRD2 thioredoxin reductase 2 2 2
MIRT495566 UNC5C unc-5 netrin receptor C 2 2
MIRT495719 PADI1 peptidyl arginine deiminase 1 2 2
MIRT495890 CLOCK clock circadian regulator 2 2
MIRT495932 SLC7A5P2 solute carrier family 7 member 5 pseudogene 2 2 2
MIRT496026 ZBED3 zinc finger BED-type containing 3 2 2
MIRT496216 PAX6 paired box 6 2 2
MIRT496349 VAMP1 vesicle associated membrane protein 1 2 2
MIRT496354 PPY pancreatic polypeptide 2 2
MIRT496400 ZSCAN16 zinc finger and SCAN domain containing 16 2 2
MIRT496416 PARVB parvin beta 2 2
MIRT496458 N6AMT1 N-6 adenine-specific DNA methyltransferase 1 2 2
MIRT496519 GINS2 GINS complex subunit 2 2 2
MIRT496562 SLC39A9 solute carrier family 39 member 9 2 2
MIRT498605 KRT8 keratin 8 2 2
MIRT503434 SLC25A45 solute carrier family 25 member 45 2 6
MIRT503573 AGAP9 ArfGAP with GTPase domain, ankyrin repeat and PH domain 9 2 2
MIRT503847 ATP13A4 ATPase 13A4 2 4
MIRT504247 LHPP phospholysine phosphohistidine inorganic pyrophosphate phosphatase 2 4
MIRT505606 SLC35F1 solute carrier family 35 member F1 2 2
MIRT507749 CERS2 ceramide synthase 2 2 4
MIRT508411 C1orf210 chromosome 1 open reading frame 210 2 6
MIRT508508 RSRC1 arginine and serine rich coiled-coil 1 2 6
MIRT508944 AK4 adenylate kinase 4 2 4
MIRT509460 ZNF587 zinc finger protein 587 2 6
MIRT509862 ZNF641 zinc finger protein 641 2 4
MIRT511397 IKZF3 IKAROS family zinc finger 3 2 6
MIRT512517 BTBD19 BTB domain containing 19 2 2
MIRT513507 NAA50 N(alpha)-acetyltransferase 50, NatE catalytic subunit 2 6
MIRT514155 TMEM145 transmembrane protein 145 2 4
MIRT514486 SLPI secretory leukocyte peptidase inhibitor 2 4
MIRT514521 SHISA9 shisa family member 9 2 2
MIRT514970 KLLN killin, p53-regulated DNA replication inhibitor 2 4
MIRT515030 IRAK4 interleukin 1 receptor associated kinase 4 2 6
MIRT515963 C9orf156 tRNA methyltransferase O 2 2
MIRT516092 ZBTB8OS zinc finger and BTB domain containing 8 opposite strand 2 4
MIRT517223 PRIM1 DNA primase subunit 1 2 4
MIRT517459 PEX26 peroxisomal biogenesis factor 26 2 4
MIRT517790 EFCAB11 EF-hand calcium binding domain 11 2 2
MIRT517979 DSCR3 DSCR3 arrestin fold containing 2 2
MIRT519458 CSTF1 cleavage stimulation factor subunit 1 2 2
MIRT519599 ZNF805 zinc finger protein 805 2 2
MIRT520339 UBXN2A UBX domain protein 2A 2 2
MIRT521345 RPP14 ribonuclease P/MRP subunit p14 2 2
MIRT521571 PTPLB 3-hydroxyacyl-CoA dehydratase 2 1 1
MIRT523382 GSG2 histone H3 associated protein kinase 2 8
MIRT524106 DNA2 DNA replication helicase/nuclease 2 2 2
MIRT524886 ARHGAP11A Rho GTPase activating protein 11A 2 4
MIRT528772 CD1D CD1d molecule 2 2
MIRT530665 TRIM56 tripartite motif containing 56 2 2
MIRT531107 PEX13 peroxisomal biogenesis factor 13 2 2
MIRT531575 ILDR1 immunoglobulin like domain containing receptor 1 2 2
MIRT535173 PLEKHB2 pleckstrin homology domain containing B2 2 4
MIRT544168 HEYL hes related family bHLH transcription factor with YRPW motif-like 2 2
MIRT550582 SLC2A5 solute carrier family 2 member 5 2 2
MIRT551039 GDE1 glycerophosphodiester phosphodiesterase 1 2 4
MIRT551295 MCF2L2 MCF.2 cell line derived transforming sequence-like 2 2 6
MIRT551339 MRE11A MRE11 homolog, double strand break repair nuclease 2 2
MIRT552092 SLFN12L schlafen family member 12 like 2 6
MIRT555403 PPM1L protein phosphatase, Mg2+/Mn2+ dependent 1L 2 2
MIRT557087 HOXB3 homeobox B3 2 2
MIRT559388 ATP11C ATPase phospholipid transporting 11C 2 2
MIRT560305 DFFA DNA fragmentation factor subunit alpha 2 2
MIRT561028 LIN7C lin-7 homolog C, crumbs cell polarity complex component 2 2
MIRT562460 COX6B1 cytochrome c oxidase subunit 6B1 2 4
MIRT562982 PARK7 Parkinsonism associated deglycase 2 2
MIRT563548 PMPCA peptidase, mitochondrial processing alpha subunit 2 2
MIRT564412 EMILIN2 elastin microfibril interfacer 2 2 4
MIRT569437 PCGF3 polycomb group ring finger 3 2 2
MIRT572097 EXOC8 exocyst complex component 8 2 2
MIRT575571 Cd99 CD99 antigen 2 2
MIRT575789 Tnfrsf10b tumor necrosis factor receptor superfamily, member 10b 2 2
MIRT576975 Lmtk2 lemur tyrosine kinase 2 2 2
MIRT610864 ARSA arylsulfatase A 2 2
MIRT614061 NTPCR nucleoside-triphosphatase, cancer-related 2 2
MIRT614141 THAP1 THAP domain containing 1 2 6
MIRT615235 BROX BRO1 domain and CAAX motif containing 2 2
MIRT617429 ANP32E acidic nuclear phosphoprotein 32 family member E 2 4
MIRT618882 MBL2 mannose binding lectin 2 2 2
MIRT618984 MRPS16 mitochondrial ribosomal protein S16 2 2
MIRT619196 SLC16A4 solute carrier family 16 member 4 2 2
MIRT620323 AQP6 aquaporin 6 2 2
MIRT621960 STX7 syntaxin 7 2 2
MIRT622057 SSBP2 single stranded DNA binding protein 2 2 2
MIRT624930 FBXW2 F-box and WD repeat domain containing 2 2 2
MIRT624986 ZNF665 zinc finger protein 665 2 4
MIRT625463 ZNF681 zinc finger protein 681 2 4
MIRT625497 SMAD9 SMAD family member 9 2 2
MIRT625599 KLHL23 kelch like family member 23 2 2
MIRT625668 C2orf48 chromosome 2 open reading frame 48 2 2
MIRT625888 INADL PATJ, crumbs cell polarity complex component 2 2
MIRT626161 NFYA nuclear transcription factor Y subunit alpha 2 2
MIRT626238 ZNF749 zinc finger protein 749 2 2
MIRT626631 SLC30A6 solute carrier family 30 member 6 2 2
MIRT626994 LINC00598 long intergenic non-protein coding RNA 598 2 2
MIRT627898 OLFML2A olfactomedin like 2A 2 2
MIRT627988 NDRG3 NDRG family member 3 2 2
MIRT628324 CLPB ClpB homolog, mitochondrial AAA ATPase chaperonin 2 2
MIRT628549 ZNF701 zinc finger protein 701 2 2
MIRT629464 WIZ widely interspaced zinc finger motifs 2 2
MIRT630527 BAZ2A bromodomain adjacent to zinc finger domain 2A 2 2
MIRT631487 KLHL21 kelch like family member 21 2 2
MIRT631957 CDKAL1 CDK5 regulatory subunit associated protein 1 like 1 2 4
MIRT632178 CCL22 C-C motif chemokine ligand 22 2 2
MIRT632282 TVP23C trans-golgi network vesicle protein 23 homolog C 2 2
MIRT632321 TMEM185B transmembrane protein 185B 2 2
MIRT632853 IGF1 insulin like growth factor 1 2 2
MIRT632862 HSPA2 heat shock protein family A (Hsp70) member 2 2 2
MIRT633322 LINC00346 long intergenic non-protein coding RNA 346 2 2
MIRT633398 FBXW8 F-box and WD repeat domain containing 8 2 2
MIRT633930 DNAH9 dynein axonemal heavy chain 9 2 2
MIRT634785 CBFA2T2 CBFA2/RUNX1 translocation partner 2 2 2
MIRT634851 ABCF1 ATP binding cassette subfamily F member 1 2 2
MIRT636370 OGFRL1 opioid growth factor receptor like 1 2 2
MIRT637219 TRUB2 TruB pseudouridine synthase family member 2 2 2
MIRT637690 PPM1D protein phosphatase, Mg2+/Mn2+ dependent 1D 2 2
MIRT639196 TRAPPC2 trafficking protein particle complex 2 2 2
MIRT639599 CD3EAP CD3e molecule associated protein 2 2
MIRT639681 PPEF2 protein phosphatase with EF-hand domain 2 2 4
MIRT640669 ARSK arylsulfatase family member K 2 2
MIRT642377 ZNF581 zinc finger protein 581 2 2
MIRT642403 ZNF556 zinc finger protein 556 2 2
MIRT645079 UQCRQ ubiquinol-cytochrome c reductase complex III subunit VII 2 2
MIRT646475 ZNF669 zinc finger protein 669 2 2
MIRT647325 RPH3AL rabphilin 3A like (without C2 domains) 2 2
MIRT647490 ZNF639 zinc finger protein 639 2 2
MIRT647989 PDE12 phosphodiesterase 12 2 2
MIRT648196 CENPN centromere protein N 2 2
MIRT649006 MRPL49 mitochondrial ribosomal protein L49 2 2
MIRT650457 ZNF141 zinc finger protein 141 2 2
MIRT650533 CCDC77 coiled-coil domain containing 77 2 2
MIRT650999 ZNF770 zinc finger protein 770 2 2
MIRT653832 SHOC2 SHOC2, leucine rich repeat scaffold protein 2 4
MIRT655734 NRXN3 neurexin 3 2 2
MIRT657577 GRSF1 G-rich RNA sequence binding factor 1 2 2
MIRT658610 ENTPD5 ectonucleoside triphosphate diphosphohydrolase 5 2 2
MIRT658633 ENAH ENAH, actin regulator 2 2
MIRT659820 CASP16 caspase 16, pseudogene 2 2
MIRT661142 ZNF43 zinc finger protein 43 2 2
MIRT661201 MPPE1 metallophosphoesterase 1 2 2
MIRT661436 MANSC1 MANSC domain containing 1 2 2
MIRT661498 CHMP1B charged multivesicular body protein 1B 2 2
MIRT661682 ZNF623 zinc finger protein 623 2 2
MIRT661796 NLRC3 NLR family CARD domain containing 3 2 2
MIRT661808 NUP85 nucleoporin 85 2 2
MIRT661861 ZNF766 zinc finger protein 766 2 2
MIRT661889 EXOSC6 exosome component 6 2 2
MIRT662291 SLC29A4 solute carrier family 29 member 4 2 2
MIRT662515 ANGPT4 angiopoietin 4 2 2
MIRT662682 LRRC47 leucine rich repeat containing 47 2 2
MIRT662716 C10orf111 chromosome 10 open reading frame 111 2 4
MIRT662834 LY6G5B lymphocyte antigen 6 family member G5B 2 2
MIRT662890 PCDHA6 protocadherin alpha 6 2 2
MIRT663134 ULBP3 UL16 binding protein 3 2 2
MIRT663710 ABHD17B abhydrolase domain containing 17B 2 2
MIRT663869 MUC20 mucin 20, cell surface associated 2 2
MIRT664267 NMUR1 neuromedin U receptor 1 2 2
MIRT664510 POLR3K RNA polymerase III subunit K 2 2
MIRT664659 TRIM65 tripartite motif containing 65 2 2
MIRT664849 HUS1 HUS1 checkpoint clamp component 2 2
MIRT664944 CARD6 caspase recruitment domain family member 6 2 4
MIRT665348 YES1 YES proto-oncogene 1, Src family tyrosine kinase 2 2
MIRT665514 UTP15 UTP15, small subunit processome component 2 2
MIRT665648 TRPM7 transient receptor potential cation channel subfamily M member 7 2 2
MIRT665668 TRAF1 TNF receptor associated factor 1 2 2
MIRT665692 TNPO3 transportin 3 2 2
MIRT665741 TMTC1 transmembrane and tetratricopeptide repeat containing 1 2 2
MIRT665850 TIAL1 TIA1 cytotoxic granule associated RNA binding protein like 1 2 2
MIRT665940 TBC1D19 TBC1 domain family member 19 2 4
MIRT666005 SYNJ2BP synaptojanin 2 binding protein 2 2
MIRT666172 SNX27 sorting nexin family member 27 2 4
MIRT666373 SHOX short stature homeobox 2 2
MIRT667004 PDPN podoplanin 2 4
MIRT667185 NR2F6 nuclear receptor subfamily 2 group F member 6 2 4
MIRT667603 LIPC lipase C, hepatic type 2 2
MIRT667828 IRGQ immunity related GTPase Q 2 2
MIRT667862 IPCEF1 interaction protein for cytohesin exchange factors 1 2 2
MIRT668296 FOSL2 FOS like 2, AP-1 transcription factor subunit 2 4
MIRT668463 FAM208A family with sequence similarity 208 member A 2 2
MIRT668580 ELMSAN1 ELM2 and Myb/SANT domain containing 1 2 4
MIRT669012 CHORDC1 cysteine and histidine rich domain containing 1 2 2
MIRT669103 CDK19 cyclin dependent kinase 19 2 2
MIRT670073 ZNF783 zinc finger family member 783 2 2
MIRT670326 CEP57L1 centrosomal protein 57 like 1 2 2
MIRT670756 HOOK3 hook microtubule tethering protein 3 2 2
MIRT670964 UGGT1 UDP-glucose glycoprotein glucosyltransferase 1 2 2
MIRT670985 MED17 mediator complex subunit 17 2 2
MIRT671195 ZNF891 zinc finger protein 891 2 2
MIRT672423 SLC10A6 solute carrier family 10 member 6 2 2
MIRT672495 YIPF4 Yip1 domain family member 4 2 2
MIRT672537 MGAM maltase-glucoamylase 2 2
MIRT672749 ZNF585B zinc finger protein 585B 2 4
MIRT673390 ZNF124 zinc finger protein 124 2 2
MIRT673452 ZNF583 zinc finger protein 583 2 2
MIRT673917 DCTN6 dynactin subunit 6 2 2
MIRT673952 ZNF500 zinc finger protein 500 2 2
MIRT674102 PLEKHA1 pleckstrin homology domain containing A1 2 2
MIRT674167 BLOC1S3 biogenesis of lysosomal organelles complex 1 subunit 3 2 2
MIRT674206 FUT2 fucosyltransferase 2 2 2
MIRT674452 PURB purine rich element binding protein B 2 4
MIRT674687 PLCE1 phospholipase C epsilon 1 2 2
MIRT674701 TMEM59 transmembrane protein 59 2 2
MIRT674800 NPR1 natriuretic peptide receptor 1 2 4
MIRT675247 MAK male germ cell associated kinase 2 2
MIRT676012 CRKL CRK like proto-oncogene, adaptor protein 2 2
MIRT676374 APTX aprataxin 2 2
MIRT676834 TNFSF15 TNF superfamily member 15 2 2
MIRT678193 CRCP CGRP receptor component 2 2
MIRT678293 PTRH2 peptidyl-tRNA hydrolase 2 2 2
MIRT679532 RAB36 RAB36, member RAS oncogene family 2 2
MIRT679669 RABAC1 Rab acceptor 1 2 2
MIRT679850 GPR75 G protein-coupled receptor 75 2 2
MIRT680533 PRIM2 DNA primase subunit 2 2 2
MIRT680563 ZNF584 zinc finger protein 584 2 2
MIRT680577 PGPEP1 pyroglutamyl-peptidase I 2 2
MIRT680849 ARL8B ADP ribosylation factor like GTPase 8B 2 2
MIRT680888 MAPK1IP1L mitogen-activated protein kinase 1 interacting protein 1 like 2 2
MIRT680940 EVC EvC ciliary complex subunit 1 2 2
MIRT680964 SLC15A1 solute carrier family 15 member 1 2 4
MIRT681017 AAED1 AhpC/TSA antioxidant enzyme domain containing 1 2 2
MIRT681065 PAQR7 progestin and adipoQ receptor family member 7 2 2
MIRT681209 ZNF638 zinc finger protein 638 2 2
MIRT681291 RFC2 replication factor C subunit 2 2 2
MIRT681366 BRI3BP BRI3 binding protein 2 2
MIRT681517 STAT2 signal transducer and activator of transcription 2 2 2
MIRT681549 ZNF738 zinc finger protein 738 2 2
MIRT681574 ABHD15 abhydrolase domain containing 15 2 2
MIRT681597 SNRPD1 small nuclear ribonucleoprotein D1 polypeptide 2 2
MIRT681806 EIF4A3 eukaryotic translation initiation factor 4A3 2 2
MIRT681912 SLC11A2 solute carrier family 11 member 2 2 2
MIRT681953 SLC19A3 solute carrier family 19 member 3 2 2
MIRT682037 AGXT2 alanine--glyoxylate aminotransferase 2 2 4
MIRT682111 ITGA3 integrin subunit alpha 3 2 4
MIRT682190 SLC38A7 solute carrier family 38 member 7 2 2
MIRT682247 SAR1A secretion associated Ras related GTPase 1A 2 2
MIRT682394 PHACTR4 phosphatase and actin regulator 4 2 2
MIRT682554 EXOSC2 exosome component 2 2 2
MIRT682665 CASP8 caspase 8 2 2
MIRT683283 ZNF99 zinc finger protein 99 2 2
MIRT683359 SCARF1 scavenger receptor class F member 1 2 2
MIRT683453 ACOT2 acyl-CoA thioesterase 2 2 2
MIRT683596 GSTCD glutathione S-transferase C-terminal domain containing 2 2
MIRT683661 ZNF695 zinc finger protein 695 2 2
MIRT683770 CPE carboxypeptidase E 2 2
MIRT683807 NOTO notochord homeobox 2 2
MIRT684462 MFSD4 major facilitator superfamily domain containing 4A 2 2
MIRT684525 C1orf174 chromosome 1 open reading frame 174 2 2
MIRT684985 MINOS1 mitochondrial inner membrane organizing system 1 2 2
MIRT685012 CXorf56 chromosome X open reading frame 56 2 2
MIRT685072 GEMIN4 gem nuclear organelle associated protein 4 2 2
MIRT685115 DTD2 D-tyrosyl-tRNA deacylase 2 (putative) 2 2
MIRT685477 CACNG8 calcium voltage-gated channel auxiliary subunit gamma 8 2 2
MIRT685831 SLC27A1 solute carrier family 27 member 1 2 2
MIRT686032 UMPS uridine monophosphate synthetase 2 2
MIRT686559 TPM3 tropomyosin 3 2 2
MIRT687287 PARP2 poly(ADP-ribose) polymerase 2 2 2
MIRT687309 OTUD7B OTU deubiquitinase 7B 2 2
MIRT688085 GLUL glutamate-ammonia ligase 2 2
MIRT688168 GABPB1 GA binding protein transcription factor beta subunit 1 2 2
MIRT688584 DARS2 aspartyl-tRNA synthetase 2, mitochondrial 2 2
MIRT688601 CYCS cytochrome c, somatic 2 2
MIRT688921 C11orf84 chromosome 11 open reading frame 84 2 2
MIRT689285 C5AR2 complement component 5a receptor 2 2 2
MIRT689622 AKAP6 A-kinase anchoring protein 6 2 2
MIRT690051 C6orf141 chromosome 6 open reading frame 141 2 2
MIRT690224 C5orf45 MRN complex interacting protein 2 2
MIRT690272 CAMLG calcium modulating ligand 2 2
MIRT690331 MRPS30 mitochondrial ribosomal protein S30 2 2
MIRT690480 ZNF33A zinc finger protein 33A 2 2
MIRT690526 ZNF566 zinc finger protein 566 2 2
MIRT690581 MICA MHC class I polypeptide-related sequence A 2 2
MIRT690675 RPF2 ribosome production factor 2 homolog 2 2
MIRT690790 ZNF589 zinc finger protein 589 2 2
MIRT690873 PLEKHG2 pleckstrin homology and RhoGEF domain containing G2 2 2
MIRT691142 HJURP Holliday junction recognition protein 2 2
MIRT691158 APOL6 apolipoprotein L6 2 2
MIRT691288 CENPM centromere protein M 2 2
MIRT691435 PRICKLE4 prickle planar cell polarity protein 4 2 2
MIRT691749 IKBKG inhibitor of nuclear factor kappa B kinase subunit gamma 2 2
MIRT691833 TMCO1 transmembrane and coiled-coil domains 1 2 2
MIRT691885 GXYLT2 glucoside xylosyltransferase 2 2 2
MIRT691947 DNAJC28 DnaJ heat shock protein family (Hsp40) member C28 2 2
MIRT692047 PAK1IP1 PAK1 interacting protein 1 2 2
MIRT692668 ZMYM1 zinc finger MYM-type containing 1 2 2
MIRT692767 NDUFS5 NADH:ubiquinone oxidoreductase subunit S5 2 2
MIRT692859 ZSWIM1 zinc finger SWIM-type containing 1 2 2
MIRT693122 SCNM1 sodium channel modifier 1 2 2
MIRT693514 MOB3A MOB kinase activator 3A 2 2
MIRT693648 ACBD7 acyl-CoA binding domain containing 7 2 2
MIRT693688 MXRA7 matrix remodeling associated 7 2 2
MIRT694078 RNASEH2B ribonuclease H2 subunit B 2 2
MIRT694163 SLC36A2 solute carrier family 36 member 2 2 2
MIRT694262 RGS9BP regulator of G protein signaling 9 binding protein 2 2
MIRT694506 AGBL5 ATP/GTP binding protein like 5 2 2
MIRT694556 BPNT1 3'(2'), 5'-bisphosphate nucleotidase 1 2 2
MIRT694639 MRI1 methylthioribose-1-phosphate isomerase 1 2 2
MIRT694710 CD300LG CD300 molecule like family member g 2 2
MIRT694753 LLGL1 LLGL1, scribble cell polarity complex component 2 2
MIRT694896 ZNF417 zinc finger protein 417 2 2
MIRT695158 BTD biotinidase 2 2
MIRT695275 CD209 CD209 molecule 2 2
MIRT695434 TCF23 transcription factor 23 2 2
MIRT695817 SRD5A1 steroid 5 alpha-reductase 1 2 2
MIRT696008 DNAJC10 DnaJ heat shock protein family (Hsp40) member C10 2 2
MIRT696345 SLC35D2 solute carrier family 35 member D2 2 2
MIRT696368 EIF2S3 eukaryotic translation initiation factor 2 subunit gamma 2 2
MIRT696533 C3 complement C3 2 2
MIRT696779 DHODH dihydroorotate dehydrogenase (quinone) 2 2
MIRT697075 PSMC4 proteasome 26S subunit, ATPase 4 2 2
MIRT697498 ZBTB8B zinc finger and BTB domain containing 8B 2 2
MIRT697630 WSB1 WD repeat and SOCS box containing 1 2 2
MIRT697931 TXNDC16 thioredoxin domain containing 16 2 2
MIRT697966 TSPYL1 TSPY like 1 2 2
MIRT698237 TMEM216 transmembrane protein 216 2 2
MIRT698643 TES testin LIM domain protein 2 2
MIRT698661 TERF2 telomeric repeat binding factor 2 2 2
MIRT698974 SPAST spastin 2 2
MIRT699047 SOAT1 sterol O-acyltransferase 1 2 2
MIRT699193 SLX4IP SLX4 interacting protein 2 2
MIRT699586 SIKE1 suppressor of IKBKE 1 2 2
MIRT699759 SEPHS1 selenophosphate synthetase 1 2 2
MIRT700350 RAB4A RAB4A, member RAS oncogene family 2 2
MIRT700402 RAB13 RAB13, member RAS oncogene family 2 2
MIRT700418 QDPR quinoid dihydropteridine reductase 2 2
MIRT700546 PTBP2 polypyrimidine tract binding protein 2 2 2
MIRT700774 PLA2G4A phospholipase A2 group IVA 2 2
MIRT700875 PER2 period circadian clock 2 2 2
MIRT700952 PDP2 pyruvate dehyrogenase phosphatase catalytic subunit 2 2 2
MIRT701077 PARD6B par-6 family cell polarity regulator beta 2 2
MIRT701172 PACS2 phosphofurin acidic cluster sorting protein 2 2 2
MIRT701479 NEK9 NIMA related kinase 9 2 2
MIRT701661 MYH9 myosin heavy chain 9 2 2
MIRT701779 MSL2 MSL complex subunit 2 2 2
MIRT702137 MAPKAPK5 mitogen-activated protein kinase-activated protein kinase 5 2 2
MIRT702494 KIAA1328 KIAA1328 2 2
MIRT703058 GTPBP10 GTP binding protein 10 2 2
MIRT703224 GOLGA3 golgin A3 2 2
MIRT703620 FBXO45 F-box protein 45 2 2
MIRT703657 FAM60A SIN3-HDAC complex associated factor 2 2
MIRT703765 FAM118A family with sequence similarity 118 member A 2 2
MIRT703832 EVI5 ecotropic viral integration site 5 2 2
MIRT703862 ERN1 endoplasmic reticulum to nucleus signaling 1 2 2
MIRT704664 CLCC1 chloride channel CLIC like 1 2 2
MIRT704812 CDC73 cell division cycle 73 2 2
MIRT705608 APAF1 apoptotic peptidase activating factor 1 2 2
MIRT705625 AP1S3 adaptor related protein complex 1 sigma 3 subunit 2 2
MIRT705682 ANKRD40 ankyrin repeat domain 40 2 2
MIRT705813 AKNA AT-hook transcription factor 2 2
MIRT706238 SYT15 synaptotagmin 15 2 2
MIRT706567 EIF2AK2 eukaryotic translation initiation factor 2 alpha kinase 2 2 2
MIRT709657 DFFB DNA fragmentation factor subunit beta 2 2
MIRT710609 ZNF555 zinc finger protein 555 2 2
MIRT711717 IREB2 iron responsive element binding protein 2 2 2
MIRT714122 TMED9 transmembrane p24 trafficking protein 9 2 2
MIRT715204 FKTN fukutin 2 2
MIRT718260 ZDHHC8 zinc finger DHHC-type containing 8 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-4419b Fluorouracil 3385 NSC19893 approved sensitive High Pancreatic Cancer cell line (PANC-1)
hsa-miR-4419b Gemcitabine 60750 NSC613327 approved sensitive High Pancreatic Cancer cell line (PANC-1)
hsa-miR-4419b Cisplatin + Decitabine resistant High Non-Small Cell Lung Cancer cell line (A549)
hsa-mir-4419b Androstenedione+Anastrozole sensitive cell line (MCF-7)

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