pre-miRNA Information
pre-miRNA hsa-mir-1273h   
Genomic Coordinates chr16: 24203116 - 24203231
Description Homo sapiens miR-1273h stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-1273h-5p
Sequence 33| CUGGGAGGUCAAGGCUGCAGU |53
Evidence Experimental
Experiments Illumina
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1028034199 14 dbSNP
rs542383563 18 dbSNP
Putative Targets

miRNA Expression profile
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol KLLN   
Synonyms CWS4, KILLIN
Description killin, p53-regulated DNA replication inhibitor
Transcript NM_001126049   
Expression
Putative miRNA Targets on KLLN
3'UTR of KLLN
(miRNA target sites are highlighted)
>KLLN|NM_001126049|3'UTR
   1 GACCTGAGACTCACTCCTTGCTCTACATCGACCTATTCTGCGCCTTCCCAAACGTGGGAAAAGGAGCTGGGCGCTAGGGC
  81 TCTCGGGCCTCTCCATCGCTGATGCCCTGCCGCTTAGGGTGAACCCTTTTGGTTCTGTGCTTGAGGGTATCTCCTGCTGC
 161 AGCCCAGAGCGTGCATTCTCCGATGTTGCAACAAACGTCCAGTCACTACCCCTGAGCTGGTGAGCGCGCCCCACCTACTG
 241 TGGACTCAGCCAAGTGACTTATCTGGTCTGAGAACCTAGTCAATGGCCGTCAGCCCAGAACAAACCTGTCAAGTCTGTTT
 321 ACAGCCCCGATTGGGCTGACCTGTCACCGTGAGAGAGCTGATTCGGAAATGCTGAGAGTTGGATCGCACTCCTACCCCGC
 401 ACCCCACCCGTCAAGGATCTACAAAGCAAGTAGTCGACCCGCTTAAAGAGAATGAGCATCAACACCAGTCTGGGAATTTA
 481 TTGTTTTTTCATTTCCCTTAGGAAGTAGAACTACAGACGACAATTTGAGTCAAAAAATATCTAACGAGACCTAGGTTGAA
 561 GCACTGAGTTGTTTTTCAAACTTTGAGAGAATGAGAATCAATCTGCATGTGTGTTCAATAATTGTAAGTGCCTAGCAAAG
 641 TCTAAAGAGGGTTTATGCTGTATTTGAGAAAGAGTACTGTATATGTGCACATCATAGTTGCAGGCAACCTCTGAAGACTA
 721 GAAACCTCAAGAGACCTAGCGCAGAAAGCCACAGGCCATTACCTAACTCCGGGACTACTAATTAAACCTGGGATATTTAC
 801 AGTGTTCTTAGAGACCTCTGAGGCTCCATAAAACTTTGCACTTATATACAGCATTTAAGATAGCTGTGCAGGAGTTAACA
 881 ACCTGCTGAAGCTTCAGTGTTGATATTTATTGAAGACTGGTTTTGTGCATAGTTCTGGTCAGCTTGGGAAAGGCAAGGAC
 961 CACAGTGGAAAAGGAAATGGAAAGCAACCGGAAAAGAGTAAGAGAAAGGCCTCCAGTTGATTTCCAGAGATGCAGATACT
1041 GTCCACACAGCCTAGCGTGAACTACAGATTTCATTATTGTATAAATAACCAAAGATAAGGAGTTCCTGATGTCTAGGTGT
1121 TCTACTAGATTGCATGGTAAAAACCAGAGCTGTGTTTAATTATCAATTACTGCGTGGTAGAAAAAGGGAAAATGAAGATG
1201 AACTTTTAAAAGGGGAGTAGATTAGGGAGGGGTAAAATGTCTCACATTTGTTTCTTAGATTGCTGATCTTGTCTCCAGAG
1281 TCCCTGTTATTAGCACTGCCCTTCTCTGTCCCTCCCCTGGAGCCTACCCTAAGTGACAATTAGTCTCATAGCATCTGAGA
1361 ATCTCTGAAATCTGCTTTCATGGAAGCAAATGAAACAAGGGTGCATTCCTGTCCTGGTGCGACAGAATCCTCTTGGATTC
1441 CATGGCACAGAGTTACTCTGGAGCAGAGATAATCTGCATCACCAGCACTAAAGTGCTAGAATATGAGACCAGCCTCCAAG
1521 TACTTCCATCCGGCTGAAGAAAGAAAATGGGAAATGGGTTTTACTGCTTCTCTAAACATCAGGTCCCTCTACTTCTCTCT
1601 AGTGGTGAATGAAAGGATCATCAATGTTGGCAGATATTTGGCCAGCCCAACAGCAACATCAGGTGGTTATTAGGAGTTGG
1681 TGAATAAAATCCTCCTTCTGTTCCTAGTGTTAAGTTGTTTCTGAAAGAAATACTGATGCATCCTTTTCCAATTTTTTGTT
1761 TTTCTTTTCCTTTCTACCCAAATGGCTGGCCCTATCTAAACTAAAGAAAGTTTCAAAAATAGTACTTTTTTAAAGTTCAG
1841 TTGAAAATACCTGCTTGGCTGTATAGATATTACAATACACTGGTCTCCAAGCACTTCAGTTCTTTTTTTTTTTTTCTTTT
1921 TTTTTTTTTTTTTTTGAGACGGAGTCTCACAGGCTGGAGTGCAGTGGCATGATCTCGGTTCACTGCAACCTCTGCCTCCC
2001 AGGTTCAAGCAATTCCCCTGCCTCAGCCTCCCGAGTAGCTGGGACTACAGGCGCACACCATCATGCCGGGCTAATTTTTT
2081 GTAGTTTAGTAAAGACAGGGTTTCACCATGTTGGTCAGGATGGTCTCGATCTCCTGACCTCGTGATCTGCCCGCCACGGC
2161 CTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCGCGCCCGGCCATACTTAGTTCTTTACCTGTCTGGATTCAGAACCA
2241 GAATACCATAGGGAGAAGTAGAAGCTTGTAACAAAGGGACAATTATATAAAGCTTCAGGGTGACTATGTAGATTGATTAG
2321 TAAGCATGGTAAACTAGCTTTAATTATCGCTTCTAACAGCTGATTCCAAAACTCTATTGTTACTACACCAAAATAATGTC
2401 GAAAGAAAATTTCTTTCTTATTTTCTTTGATAAGCGAAATGACCAGCAACTTGATGTGGATGATATAAATACTTGATGTG
2481 CTCTTTGTAGGTCATCTGCTAAGATGTCTTTTGTGTAAACACTCTGATCTCTATAGTGCCTTTCTCATCTCCCATACGCT
2561 GACCTTTCAAAAAGGGATCTAACTCAATAGCTTTAATTTTTAAACAATCTTCTGTATTTCTGTCTGTTTAACTACTGTTT
2641 TCTAAATAATACAGAATATAAAAACATAATAATCATTGGATTGAATGTAAACCCATTGTTCCAAGGGTCTGAGGTTTTCC
2721 CCTTATTTCATTTATCCTAATAACAAACATTATTGTTCTTTCAATAAAGATAATTTTAAGACATTCTCCA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' ugACGUCGGAACUGGAGGGUc 5'
            |||| |||  :||||||| 
Target 5' acTGCAACCTCTGCCTCCCAg 3'
1982 - 2002 167.00 -29.30
2
miRNA  3' ugAC-GUCGGAACUGGAGGGUc 5'
            || | |||  |:||||||| 
Target 5' tcTGCCCGCCACGGCCTCCCAa 3'
2146 - 2167 159.00 -24.40
3
miRNA  3' ugacGUCGGAACUGGAGGGUc 5'
              | ||||  :||||||: 
Target 5' tcccCTGCCTCAGCCTCCCGa 3'
2014 - 2034 141.00 -19.50
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN31574929 1 COSMIC
COSN30160980 14 COSMIC
COSN31490271 64 COSMIC
COSN31582232 80 COSMIC
COSN26436155 102 COSMIC
COSN31533169 110 COSMIC
COSN22854166 209 COSMIC
COSN30531383 213 COSMIC
COSN1505581 348 COSMIC
COSN24511889 972 COSMIC
COSN21695425 1539 COSMIC
COSN505896 1764 COSMIC
COSN19093736 1915 COSMIC
COSN23840717 2056 COSMIC
COSN23803340 2153 COSMIC
COSN21463033 2201 COSMIC
COSN32056259 2435 COSMIC
COSN22178104 2679 COSMIC
COSN26218223 2740 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1252090932 1 dbSNP
rs1221372634 3 dbSNP
rs1320293027 15 dbSNP
rs866089700 16 dbSNP
rs1247277998 17 dbSNP
rs1453243802 19 dbSNP
rs754403847 20 dbSNP
rs948529354 22 dbSNP
rs915748685 23 dbSNP
rs1038101433 25 dbSNP
rs1448308319 26 dbSNP
rs1373667040 29 dbSNP
rs1049005151 38 dbSNP
rs751537271 44 dbSNP
rs181069579 53 dbSNP
rs776404259 54 dbSNP
rs779972240 59 dbSNP
rs1291663041 62 dbSNP
rs1226244257 76 dbSNP
rs982834495 80 dbSNP
rs1484565201 84 dbSNP
rs755976514 87 dbSNP
rs1247814230 89 dbSNP
rs1447975711 91 dbSNP
rs538764371 104 dbSNP
rs1267163366 110 dbSNP
rs1419734367 112 dbSNP
rs1314749155 118 dbSNP
rs35361056 120 dbSNP
rs944445841 121 dbSNP
rs1448196453 124 dbSNP
rs1378853832 125 dbSNP
rs1470294318 136 dbSNP
rs922847290 149 dbSNP
rs977749646 151 dbSNP
rs1436956643 158 dbSNP
rs1379827642 161 dbSNP
rs966768504 163 dbSNP
rs1218862601 173 dbSNP
rs975642929 175 dbSNP
rs1299359927 179 dbSNP
rs990352050 192 dbSNP
rs1325688810 193 dbSNP
rs1329871669 194 dbSNP
rs964142634 197 dbSNP
rs1268014697 201 dbSNP
rs1210921919 219 dbSNP
rs1034458216 220 dbSNP
rs1002029131 228 dbSNP
rs1243020465 231 dbSNP
rs747190523 247 dbSNP
rs141066244 256 dbSNP
rs768601757 262 dbSNP
rs1480438950 270 dbSNP
rs1158970309 275 dbSNP
rs1409600288 277 dbSNP
rs1458728213 278 dbSNP
rs746974442 282 dbSNP
rs1031108701 283 dbSNP
rs1049035850 284 dbSNP
rs549954376 289 dbSNP
rs531710639 301 dbSNP
rs147739023 312 dbSNP
rs1405582559 318 dbSNP
rs1024196123 322 dbSNP
rs1247888662 324 dbSNP
rs1218968439 328 dbSNP
rs1012856533 329 dbSNP
rs565600813 352 dbSNP
rs1225965766 361 dbSNP
rs1285459607 364 dbSNP
rs911677803 365 dbSNP
rs1218930167 369 dbSNP
rs1286258766 371 dbSNP
rs1241382007 373 dbSNP
rs1356291852 374 dbSNP
rs1305572292 379 dbSNP
rs1490376722 379 dbSNP
rs1038196954 385 dbSNP
rs1223664245 386 dbSNP
rs1368406887 389 dbSNP
rs1473564907 397 dbSNP
rs1177653777 398 dbSNP
rs1412804491 402 dbSNP
rs1403348050 403 dbSNP
rs1162972380 405 dbSNP
rs1367739313 407 dbSNP
rs1425500280 413 dbSNP
rs1042514560 414 dbSNP
rs945093784 419 dbSNP
rs549283354 424 dbSNP
rs1280584660 430 dbSNP
rs990381784 435 dbSNP
rs941227231 438 dbSNP
rs190019605 463 dbSNP
rs1359764009 464 dbSNP
rs1365238832 465 dbSNP
rs1271874593 483 dbSNP
rs1182474596 490 dbSNP
rs1438974647 490 dbSNP
rs886853852 496 dbSNP
rs1421355710 509 dbSNP
rs1236778731 521 dbSNP
rs771917238 522 dbSNP
rs1358375092 523 dbSNP
rs1158307852 533 dbSNP
rs1183417258 535 dbSNP
rs1259024071 537 dbSNP
rs1215170154 538 dbSNP
rs1445533715 539 dbSNP
rs1433633785 540 dbSNP
rs1046842267 545 dbSNP
rs746073034 546 dbSNP
rs779241478 550 dbSNP
rs546594521 552 dbSNP
rs975615084 563 dbSNP
rs1330174992 564 dbSNP
rs527952325 568 dbSNP
rs185094431 571 dbSNP
rs915524974 582 dbSNP
rs560318248 583 dbSNP
rs868229865 589 dbSNP
rs1218327551 591 dbSNP
rs927476077 594 dbSNP
rs1383911754 597 dbSNP
rs1227216408 603 dbSNP
rs1489485147 609 dbSNP
rs545544697 624 dbSNP
rs1259266273 625 dbSNP
rs990036632 626 dbSNP
rs757250596 629 dbSNP
rs1215750037 645 dbSNP
rs7901097 647 dbSNP
rs1031497239 648 dbSNP
rs1304020241 649 dbSNP
rs982227448 654 dbSNP
rs1188202747 656 dbSNP
rs1464221058 656 dbSNP
rs1371504995 664 dbSNP
rs970693450 670 dbSNP
rs1344958727 671 dbSNP
rs1279143908 678 dbSNP
rs1413280207 681 dbSNP
rs564991821 686 dbSNP
rs1339191019 689 dbSNP
rs950708133 694 dbSNP
rs1027632333 717 dbSNP
rs752592502 720 dbSNP
rs1327867490 729 dbSNP
rs543082103 737 dbSNP
rs1227693294 740 dbSNP
rs1023653461 742 dbSNP
rs1273788365 751 dbSNP
rs1342191813 755 dbSNP
rs994757307 756 dbSNP
rs900384916 765 dbSNP
rs1012282716 770 dbSNP
rs1263549650 771 dbSNP
rs894378768 788 dbSNP
rs1016897965 789 dbSNP
rs1194097117 792 dbSNP
rs1246205299 799 dbSNP
rs1479473984 802 dbSNP
rs1179234767 809 dbSNP
rs1430671105 813 dbSNP
rs1457143938 814 dbSNP
rs1005788190 818 dbSNP
rs1338149905 823 dbSNP
rs370905351 824 dbSNP
rs576119843 825 dbSNP
rs554575355 826 dbSNP
rs193149038 828 dbSNP
rs1466341357 835 dbSNP
rs777746796 840 dbSNP
rs1047211102 845 dbSNP
rs758349626 850 dbSNP
rs1283346058 858 dbSNP
rs1328444810 861 dbSNP
rs933775427 864 dbSNP
rs1042154611 868 dbSNP
rs1468888951 871 dbSNP
rs1351043262 882 dbSNP
rs945097749 883 dbSNP
rs1289363079 885 dbSNP
rs190576098 889 dbSNP
rs1201730388 893 dbSNP
rs1053351356 894 dbSNP
rs1472582524 896 dbSNP
rs1039334339 897 dbSNP
rs927590216 906 dbSNP
rs1186355716 921 dbSNP
rs942395877 927 dbSNP
rs1454597349 935 dbSNP
rs980743043 935 dbSNP
rs367801804 945 dbSNP
rs552946896 958 dbSNP
rs1054076618 968 dbSNP
rs149992281 980 dbSNP
rs1202318977 985 dbSNP
rs1349324717 990 dbSNP
rs924137454 994 dbSNP
rs756622635 997 dbSNP
rs1407925548 998 dbSNP
rs983573108 1004 dbSNP
rs982574784 1012 dbSNP
rs1243855465 1017 dbSNP
rs1270278813 1022 dbSNP
rs1282178927 1028 dbSNP
rs950737364 1054 dbSNP
rs1258719676 1056 dbSNP
rs970788362 1057 dbSNP
rs1324954987 1059 dbSNP
rs1194623800 1070 dbSNP
rs916689747 1071 dbSNP
rs1420184915 1079 dbSNP
rs1295086444 1080 dbSNP
rs1383773887 1088 dbSNP
rs1446143016 1090 dbSNP
rs571678582 1107 dbSNP
rs1369433503 1110 dbSNP
rs994872380 1114 dbSNP
rs183894316 1122 dbSNP
rs191518084 1125 dbSNP
rs1397173016 1130 dbSNP
rs1395375377 1134 dbSNP
rs1310383065 1144 dbSNP
rs56389051 1168 dbSNP
rs1005468817 1184 dbSNP
rs951267088 1193 dbSNP
rs1009203010 1196 dbSNP
rs1341577197 1198 dbSNP
rs890315860 1199 dbSNP
rs1253121213 1203 dbSNP
rs1042576369 1207 dbSNP
rs1200373748 1208 dbSNP
rs567345489 1215 dbSNP
rs1183846495 1217 dbSNP
rs1389217823 1218 dbSNP
rs1426335715 1220 dbSNP
rs1451741542 1232 dbSNP
rs893591399 1242 dbSNP
rs1053466617 1244 dbSNP
rs1334528680 1251 dbSNP
rs998458449 1276 dbSNP
rs1408071495 1279 dbSNP
rs1221971947 1290 dbSNP
rs530010360 1296 dbSNP
rs900914720 1298 dbSNP
rs548921567 1301 dbSNP
rs1361577811 1304 dbSNP
rs527990207 1305 dbSNP
rs1297891944 1316 dbSNP
rs1308094217 1324 dbSNP
rs186662792 1325 dbSNP
rs1261761447 1328 dbSNP
rs1326251357 1329 dbSNP
rs565799299 1333 dbSNP
rs1247792332 1337 dbSNP
rs1484720493 1348 dbSNP
rs950324368 1350 dbSNP
rs917426656 1353 dbSNP
rs1261817736 1354 dbSNP
rs533552717 1356 dbSNP
rs983989404 1359 dbSNP
rs1174217772 1361 dbSNP
rs1431425271 1365 dbSNP
rs750010648 1372 dbSNP
rs929449995 1399 dbSNP
rs935608831 1401 dbSNP
rs116928332 1403 dbSNP
rs1046540588 1404 dbSNP
rs1182293782 1410 dbSNP
rs543524504 1420 dbSNP
rs964722457 1421 dbSNP
rs184216900 1442 dbSNP
rs560875179 1444 dbSNP
rs916656956 1449 dbSNP
rs1281416688 1452 dbSNP
rs990909150 1459 dbSNP
rs1284021852 1463 dbSNP
rs1315430847 1468 dbSNP
rs1217531914 1470 dbSNP
rs1251023826 1472 dbSNP
rs954754961 1476 dbSNP
rs963332533 1477 dbSNP
rs1196705745 1478 dbSNP
rs1270412003 1480 dbSNP
rs1020863504 1488 dbSNP
rs561450801 1491 dbSNP
rs542634874 1493 dbSNP
rs1903860 1498 dbSNP
rs554012658 1508 dbSNP
rs1424255044 1512 dbSNP
rs893623945 1519 dbSNP
rs1367462799 1530 dbSNP
rs544909412 1531 dbSNP
rs1279443095 1532 dbSNP
rs80005718 1534 dbSNP
rs531162210 1542 dbSNP
rs1001879832 1551 dbSNP
rs556057845 1554 dbSNP
rs1308124393 1558 dbSNP
rs1358372977 1565 dbSNP
rs191630598 1577 dbSNP
rs1293339214 1578 dbSNP
rs1490352134 1583 dbSNP
rs1204388098 1587 dbSNP
rs997974056 1603 dbSNP
rs1177637579 1617 dbSNP
rs965218352 1624 dbSNP
rs1245174298 1629 dbSNP
rs1377624633 1630 dbSNP
rs1017945496 1631 dbSNP
rs1412782078 1633 dbSNP
rs1006598237 1634 dbSNP
rs893439863 1651 dbSNP
rs1161828247 1663 dbSNP
rs1367559671 1669 dbSNP
rs1425322672 1675 dbSNP
rs1328247769 1678 dbSNP
rs567383999 1682 dbSNP
rs1444990198 1690 dbSNP
rs1299163294 1694 dbSNP
rs1382420801 1695 dbSNP
rs896088294 1700 dbSNP
rs139261693 1712 dbSNP
rs559242940 1717 dbSNP
rs776163150 1719 dbSNP
rs1213519951 1722 dbSNP
rs999621692 1726 dbSNP
rs902761339 1731 dbSNP
rs1439549459 1733 dbSNP
rs920733998 1735 dbSNP
rs1293766667 1747 dbSNP
rs1459062743 1748 dbSNP
rs973504572 1749 dbSNP
rs188576792 1753 dbSNP
rs1370595413 1757 dbSNP
rs943398070 1762 dbSNP
rs1047118121 1764 dbSNP
rs949497530 1789 dbSNP
rs895318892 1791 dbSNP
rs1167480043 1794 dbSNP
rs1417450699 1796 dbSNP
rs767495314 1806 dbSNP
rs1171654618 1813 dbSNP
rs1405852757 1827 dbSNP
rs1450850827 1832 dbSNP
rs1339069436 1841 dbSNP
rs954730785 1850 dbSNP
rs183638448 1855 dbSNP
rs1267910957 1861 dbSNP
rs942105320 1862 dbSNP
rs1181036341 1870 dbSNP
rs552063520 1875 dbSNP
rs760596593 1877 dbSNP
rs957878077 1891 dbSNP
rs1249819793 1893 dbSNP
rs1210691039 1899 dbSNP
rs1489558473 1900 dbSNP
rs1308847074 1902 dbSNP
rs1245031710 1903 dbSNP
rs1243526340 1907 dbSNP
rs983454661 1908 dbSNP
rs1311449475 1909 dbSNP
rs369197917 1911 dbSNP
rs1334668554 1912 dbSNP
rs865997618 1913 dbSNP
rs567129170 1915 dbSNP
rs113730541 1916 dbSNP
rs1179104228 1916 dbSNP
rs1429265001 1916 dbSNP
rs796254377 1916 dbSNP
rs1024716753 1917 dbSNP
rs772642013 1917 dbSNP
rs1491323518 1918 dbSNP
rs1327701628 1919 dbSNP
rs1363384851 1921 dbSNP
rs1282052248 1922 dbSNP
rs1013705888 1926 dbSNP
rs976647564 1927 dbSNP
rs1263547843 1929 dbSNP
rs1302141512 1930 dbSNP
rs1424491150 1931 dbSNP
rs1361504841 1933 dbSNP
rs1282364504 1934 dbSNP
rs1160801409 1935 dbSNP
rs1157167737 1936 dbSNP
rs1194558508 1936 dbSNP
rs1202140363 1936 dbSNP
rs1268247717 1936 dbSNP
rs1297995981 1936 dbSNP
rs1378601608 1936 dbSNP
rs1469898801 1936 dbSNP
rs1479750027 1936 dbSNP
rs5786795 1936 dbSNP
rs763209997 1936 dbSNP
rs1363106307 1937 dbSNP
rs1406706303 1937 dbSNP
rs1466960646 1937 dbSNP
rs1469015924 1937 dbSNP
rs1283806235 1938 dbSNP
rs1363320235 1940 dbSNP
rs569434957 1941 dbSNP
rs1281042947 1943 dbSNP
rs965146818 1949 dbSNP
rs550852908 1952 dbSNP
rs1291137741 1956 dbSNP
rs1489868508 1960 dbSNP
rs1222010232 1969 dbSNP
rs1225391385 1972 dbSNP
rs1018084283 1976 dbSNP
rs192064705 1977 dbSNP
rs1365902156 1989 dbSNP
rs188956302 2001 dbSNP
rs755493639 2003 dbSNP
rs1162465014 2006 dbSNP
rs771826993 2007 dbSNP
rs542671953 2012 dbSNP
rs527262178 2015 dbSNP
rs1293583068 2016 dbSNP
rs1349806992 2018 dbSNP
rs999190332 2032 dbSNP
rs902184994 2033 dbSNP
rs559860708 2035 dbSNP
rs1241189375 2041 dbSNP
rs1314566828 2047 dbSNP
rs1357518835 2052 dbSNP
rs943544607 2053 dbSNP
rs1266102724 2054 dbSNP
rs1480626397 2060 dbSNP
rs1194528755 2063 dbSNP
rs1013863440 2064 dbSNP
rs545310935 2067 dbSNP
rs1055287973 2068 dbSNP
rs1240942773 2077 dbSNP
rs1446052282 2081 dbSNP
rs913874411 2081 dbSNP
rs573588280 2084 dbSNP
rs1371936763 2091 dbSNP
rs1460407598 2096 dbSNP
rs150816814 2100 dbSNP
rs1341552790 2104 dbSNP
rs1320630706 2110 dbSNP
rs887865832 2122 dbSNP
rs1451705389 2123 dbSNP
rs556335233 2127 dbSNP
rs1399294889 2128 dbSNP
rs1313551862 2131 dbSNP
rs1048312669 2134 dbSNP
rs1306926611 2135 dbSNP
rs957910603 2141 dbSNP
rs1253551127 2142 dbSNP
rs1173671772 2147 dbSNP
rs373364249 2152 dbSNP
rs923269796 2153 dbSNP
rs1182013418 2156 dbSNP
rs374986491 2157 dbSNP
rs548514172 2158 dbSNP
rs141469860 2163 dbSNP
rs1469221851 2164 dbSNP
rs543307510 2166 dbSNP
rs1174067559 2169 dbSNP
rs911160271 2169 dbSNP
rs980604833 2172 dbSNP
rs1467782798 2185 dbSNP
rs1303608499 2188 dbSNP
rs1190823236 2191 dbSNP
rs78839565 2195 dbSNP
rs140073260 2196 dbSNP
rs533991936 2197 dbSNP
rs1025167074 2198 dbSNP
rs566878155 2201 dbSNP
rs749476311 2202 dbSNP
rs1013322063 2203 dbSNP
rs1210413519 2207 dbSNP
rs60373064 2213 dbSNP
rs966379121 2214 dbSNP
rs1206442731 2223 dbSNP
rs1024659060 2225 dbSNP
rs1263255708 2226 dbSNP
rs1218882903 2227 dbSNP
rs530195013 2229 dbSNP
rs1197112865 2249 dbSNP
rs1431207742 2251 dbSNP
rs183136843 2257 dbSNP
rs748659967 2259 dbSNP
rs1033971383 2261 dbSNP
rs899452245 2268 dbSNP
rs1300180565 2273 dbSNP
rs1326200448 2278 dbSNP
rs781774241 2281 dbSNP
rs1404913166 2286 dbSNP
rs1335468383 2291 dbSNP
rs1454989531 2300 dbSNP
rs1037955781 2303 dbSNP
rs1006381812 2306 dbSNP
rs1314820267 2307 dbSNP
rs1241792092 2310 dbSNP
rs887953117 2311 dbSNP
rs889278788 2317 dbSNP
rs1047769480 2318 dbSNP
rs1220196264 2320 dbSNP
rs1271030116 2322 dbSNP
rs1488748833 2332 dbSNP
rs371100979 2335 dbSNP
rs994009741 2339 dbSNP
rs933395736 2342 dbSNP
rs189765659 2348 dbSNP
rs184914771 2349 dbSNP
rs536035434 2358 dbSNP
rs181205569 2359 dbSNP
rs1250027548 2372 dbSNP
rs1421968140 2375 dbSNP
rs911127789 2377 dbSNP
rs1301336046 2379 dbSNP
rs1352182256 2384 dbSNP
rs1049637350 2388 dbSNP
rs936478022 2389 dbSNP
rs1241914489 2393 dbSNP
rs925240268 2404 dbSNP
rs867492561 2413 dbSNP
rs1243192451 2415 dbSNP
rs1291403424 2415 dbSNP
rs75742574 2418 dbSNP
rs1474968095 2419 dbSNP
rs1481463289 2420 dbSNP
rs966848462 2425 dbSNP
rs1178995161 2435 dbSNP
rs917697756 2436 dbSNP
rs1444231893 2445 dbSNP
rs1185378071 2448 dbSNP
rs969654175 2450 dbSNP
rs991822493 2453 dbSNP
rs1406463497 2456 dbSNP
rs1459885766 2459 dbSNP
rs1353146236 2462 dbSNP
rs751899970 2472 dbSNP
rs1242426894 2473 dbSNP
rs1033897702 2478 dbSNP
rs77542800 2483 dbSNP
rs952224634 2484 dbSNP
rs1458707781 2488 dbSNP
rs1285466139 2495 dbSNP
rs1026913967 2517 dbSNP
rs560896889 2524 dbSNP
rs901931710 2526 dbSNP
rs1040468246 2529 dbSNP
rs1339147245 2537 dbSNP
rs560097889 2544 dbSNP
rs1007479735 2552 dbSNP
rs995213590 2555 dbSNP
rs1285116177 2557 dbSNP
rs551051140 2558 dbSNP
rs962352944 2563 dbSNP
rs1239315693 2568 dbSNP
rs533300514 2574 dbSNP
rs1381287951 2585 dbSNP
rs557052599 2586 dbSNP
rs1447699533 2589 dbSNP
rs1016555504 2595 dbSNP
rs1049641885 2605 dbSNP
rs1327107893 2608 dbSNP
rs936597489 2609 dbSNP
rs1030459460 2616 dbSNP
rs1414282729 2628 dbSNP
rs373583523 2630 dbSNP
rs562639933 2643 dbSNP
rs1340676218 2646 dbSNP
rs1429460540 2654 dbSNP
rs1042594288 2655 dbSNP
rs536723454 2656 dbSNP
rs892585249 2657 dbSNP
rs1442509168 2668 dbSNP
rs753496923 2669 dbSNP
rs1282400765 2670 dbSNP
rs936697394 2674 dbSNP
rs544033033 2680 dbSNP
rs903848459 2683 dbSNP
rs1281055837 2690 dbSNP
rs917666605 2697 dbSNP
rs1230611556 2710 dbSNP
rs1261112204 2716 dbSNP
rs1479098653 2724 dbSNP
rs947958947 2725 dbSNP
rs1429067836 2726 dbSNP
rs991915979 2734 dbSNP
rs1203420335 2745 dbSNP
rs1174642178 2748 dbSNP
rs958989747 2753 dbSNP
rs926297153 2754 dbSNP
rs1315628107 2764 dbSNP
rs992041763 2766 dbSNP
rs1361821513 2771 dbSNP
rs1400569193 2772 dbSNP
rs76631158 2778 dbSNP
rs12571737 2794 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HEK293S
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in GSM1084042. RNA binding protein: AGO2. Condition:CLIP_noarsenite_rep2 HITS-CLIP data was present in GSM1084065. RNA binding protein: AGO2. Condition:CLIP_emetine_AbnovaAb HITS-CLIP data was present in GSM1084072. RNA binding protein: AGO2. Condition:CLIP_nohippuristanol_rep1_AbnovaAb ...

- Karginov FV; Hannon GJ, 2013, Genes & development.

Article - Karginov FV; Hannon GJ
- Genes & development, 2013
When adapting to environmental stress, cells attenuate and reprogram their translational output. In part, these altered translation profiles are established through changes in the interactions between RNA-binding proteins and mRNAs. The Argonaute 2 (Ago2)/microRNA (miRNA) machinery has been shown to participate in stress-induced translational up-regulation of a particular mRNA, CAT-1; however, a detailed, transcriptome-wide understanding of the involvement of Ago2 in the process has been lacking. Here, we profiled the overall changes in Ago2-mRNA interactions upon arsenite stress by cross-linking immunoprecipitation (CLIP) followed by high-throughput sequencing (CLIP-seq). Ago2 displayed a significant remodeling of its transcript occupancy, with the majority of 3' untranslated region (UTR) and coding sequence (CDS) sites exhibiting stronger interaction. Interestingly, target sites that were destined for release from Ago2 upon stress were depleted in miRNA complementarity signatures, suggesting an alternative mode of interaction. To compare the changes in Ago2-binding patterns across transcripts with changes in their translational states, we measured mRNA profiles on ribosome/polysome gradients by RNA sequencing (RNA-seq). Increased Ago2 occupancy correlated with stronger repression of translation for those mRNAs, as evidenced by a shift toward lighter gradient fractions upon stress, while release of Ago2 was associated with the limited number of transcripts that remained translated. Taken together, these data point to a role for Ago2 and the mammalian miRNAs in mediating the translational component of the stress response.
LinkOut: [PMID: 23824327]
CLIP-seq Support 1 for dataset GSM1084042
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_noarsenite_rep2
Location of target site ENST00000445946.3 | 3UTR | ACGGCCUCCCAAAGUGCUGGGAUUACAGGCGUGAGC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM1084065
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_emetine_AbnovaAb
Location of target site ENST00000445946.3 | 3UTR | ACGGCCUCCCAAAGUGCUGGGAUU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
CLIP-seq Support 3 for dataset GSM1084072
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_nohippuristanol_rep1_AbnovaAb
Location of target site ENST00000445946.3 | 3UTR | CACGGCCUCCCAAAGUGCUGGGAUU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
494 hsa-miR-1273h-5p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT074355 TNRC6A trinucleotide repeat containing 6A 2 2
MIRT100721 TJAP1 tight junction associated protein 1 2 2
MIRT115545 MAZ MYC associated zinc finger protein 2 2
MIRT124982 XIAP X-linked inhibitor of apoptosis 2 4
MIRT139911 BTF3L4 basic transcription factor 3 like 4 2 6
MIRT177183 ARL5B ADP ribosylation factor like GTPase 5B 2 4
MIRT187994 MBD6 methyl-CpG binding domain protein 6 2 2
MIRT207410 MAT2A methionine adenosyltransferase 2A 2 6
MIRT241928 DYRK2 dual specificity tyrosine phosphorylation regulated kinase 2 2 2
MIRT260110 KLHL21 kelch like family member 21 2 2
MIRT260358 XRCC6 X-ray repair cross complementing 6 2 6
MIRT266428 RPRD2 regulation of nuclear pre-mRNA domain containing 2 2 2
MIRT294663 ZNF548 zinc finger protein 548 2 2
MIRT351039 PLEKHB2 pleckstrin homology domain containing B2 2 2
MIRT379943 PRRG4 proline rich and Gla domain 4 2 2
MIRT398983 KAT7 lysine acetyltransferase 7 2 2
MIRT441465 BEST3 bestrophin 3 2 2
MIRT446750 ZNF491 zinc finger protein 491 2 2
MIRT449224 RAD51B RAD51 paralog B 2 2
MIRT450623 AQR aquarius intron-binding spliceosomal factor 2 2
MIRT451090 ZNF584 zinc finger protein 584 2 2
MIRT451558 CIAPIN1 cytokine induced apoptosis inhibitor 1 2 2
MIRT451736 CES3 carboxylesterase 3 2 2
MIRT452411 QDPR quinoid dihydropteridine reductase 2 2
MIRT452559 ZFP69B ZFP69 zinc finger protein B 2 2
MIRT452851 LAX1 lymphocyte transmembrane adaptor 1 2 2
MIRT452922 DISC1 disrupted in schizophrenia 1 2 2
MIRT453043 TANGO2 transport and golgi organization 2 homolog 2 4
MIRT453097 HOXC4 homeobox C4 2 2
MIRT453297 ZNF394 zinc finger protein 394 2 2
MIRT453593 ZNF557 zinc finger protein 557 2 2
MIRT453787 KBTBD12 kelch repeat and BTB domain containing 12 2 2
MIRT453987 CECR1 adenosine deaminase 2 2 2
MIRT454083 TMEM209 transmembrane protein 209 2 2
MIRT454652 FBXL18 F-box and leucine rich repeat protein 18 2 2
MIRT454753 PFKFB3 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3 2 2
MIRT455311 TTLL9 tubulin tyrosine ligase like 9 2 2
MIRT456468 SERAC1 serine active site containing 1 2 2
MIRT456554 TOMM20 translocase of outer mitochondrial membrane 20 2 2
MIRT456716 TMEM239 transmembrane protein 239 2 4
MIRT456796 SIGLEC14 sialic acid binding Ig like lectin 14 2 2
MIRT457487 SLC35F6 solute carrier family 35 member F6 2 2
MIRT457999 MRPL12 mitochondrial ribosomal protein L12 2 2
MIRT458130 TLCD2 TLC domain containing 2 2 2
MIRT459027 ZNF490 zinc finger protein 490 2 4
MIRT459119 FADS6 fatty acid desaturase 6 2 2
MIRT459315 HAVCR2 hepatitis A virus cellular receptor 2 2 2
MIRT459385 MPLKIP M-phase specific PLK1 interacting protein 2 2
MIRT459412 FAM83B family with sequence similarity 83 member B 2 2
MIRT459974 RFT1 RFT1 homolog 2 2
MIRT460480 FAM105A family with sequence similarity 105 member A 2 6
MIRT460586 FEM1A fem-1 homolog A 2 2
MIRT460920 NOA1 nitric oxide associated 1 2 4
MIRT461072 OPA3 OPA3, outer mitochondrial membrane lipid metabolism regulator 2 2
MIRT461590 DPH2 DPH2 homolog 2 2
MIRT461854 ZNF317 zinc finger protein 317 2 2
MIRT462176 ACADL acyl-CoA dehydrogenase, long chain 2 2
MIRT462446 GCDH glutaryl-CoA dehydrogenase 2 2
MIRT463854 WNT7B Wnt family member 7B 2 2
MIRT464310 UST uronyl 2-sulfotransferase 2 2
MIRT464815 UBE2B ubiquitin conjugating enzyme E2 B 2 2
MIRT465453 TOR2A torsin family 2 member A 2 2
MIRT466073 TMEM184C transmembrane protein 184C 2 2
MIRT466514 TBXA2R thromboxane A2 receptor 2 2
MIRT467072 SRRD SRR1 domain containing 2 2
MIRT469551 RARA retinoic acid receptor alpha 2 2
MIRT469741 RAB2B RAB2B, member RAS oncogene family 2 2
MIRT470759 PNPLA6 patatin like phospholipase domain containing 6 2 2
MIRT470875 PLXND1 plexin D1 2 2
MIRT470976 PITPNA phosphatidylinositol transfer protein alpha 2 2
MIRT471048 PIM3 Pim-3 proto-oncogene, serine/threonine kinase 2 2
MIRT471215 PHAX phosphorylated adaptor for RNA export 2 2
MIRT471246 PGM2L1 phosphoglucomutase 2 like 1 2 2
MIRT471286 PGAM4 phosphoglycerate mutase family member 4 2 2
MIRT471467 PDE7B phosphodiesterase 7B 2 2
MIRT473069 MORN4 MORN repeat containing 4 2 4
MIRT473989 LRRC20 leucine rich repeat containing 20 2 2
MIRT474518 KLHDC8A kelch domain containing 8A 2 2
MIRT474990 KANSL1 KAT8 regulatory NSL complex subunit 1 2 2
MIRT475547 HNRNPUL1 heterogeneous nuclear ribonucleoprotein U like 1 2 2
MIRT476350 GIGYF1 GRB10 interacting GYF protein 1 2 2
MIRT477298 EPHB2 EPH receptor B2 2 2
MIRT477933 DPM2 dolichyl-phosphate mannosyltransferase subunit 2, regulatory 2 2
MIRT478282 DDX19A DEAD-box helicase 19A 2 4
MIRT478472 CYP20A1 cytochrome P450 family 20 subfamily A member 1 2 2
MIRT478559 CTNND1 catenin delta 1 2 2
MIRT478618 CTDNEP1 CTD nuclear envelope phosphatase 1 2 2
MIRT478834 CRISPLD2 cysteine rich secretory protein LCCL domain containing 2 2 2
MIRT479007 COL5A1 collagen type V alpha 1 chain 2 2
MIRT479166 CLSPN claspin 2 2
MIRT482454 ADAR adenosine deaminase, RNA specific 2 4
MIRT483019 KHSRP KH-type splicing regulatory protein 2 4
MIRT483798 CYP2W1 cytochrome P450 family 2 subfamily W member 1 2 6
MIRT486087 SLC7A5 solute carrier family 7 member 5 2 4
MIRT486304 SIPA1 signal-induced proliferation-associated 1 2 2
MIRT486490 MYH11 myosin heavy chain 11 2 2
MIRT486881 TSPYL4 TSPY like 4 2 2
MIRT487125 NCOR2 nuclear receptor corepressor 2 2 2
MIRT487542 TM6SF2 transmembrane 6 superfamily member 2 2 4
MIRT487676 B3GALT5 beta-1,3-galactosyltransferase 5 2 4
MIRT489251 TTLL1 tubulin tyrosine ligase like 1 2 4
MIRT489276 RBM8A RNA binding motif protein 8A 2 8
MIRT489496 CRLF3 cytokine receptor like factor 3 2 4
MIRT489571 SSBP2 single stranded DNA binding protein 2 2 2
MIRT489694 SCAMP4 secretory carrier membrane protein 4 2 2
MIRT490166 TMEM63C transmembrane protein 63C 2 2
MIRT491199 MLLT1 MLLT1, super elongation complex subunit 2 4
MIRT491260 DHX40 DEAH-box helicase 40 2 2
MIRT491385 HAUS3 HAUS augmin like complex subunit 3 2 2
MIRT491548 YAE1D1 Yae1 domain containing 1 2 2
MIRT492722 PHF12 PHD finger protein 12 2 2
MIRT493866 FAM73B mitoguardin 2 2 4
MIRT494549 BAK1 BCL2 antagonist/killer 1 2 2
MIRT498586 KRT8 keratin 8 2 2
MIRT498722 SNTN sentan, cilia apical structure protein 2 6
MIRT499982 HIST1H2BD histone cluster 1 H2B family member d 2 4
MIRT503414 SLC25A45 solute carrier family 25 member 45 2 6
MIRT508491 FTO FTO, alpha-ketoglutarate dependent dioxygenase 2 2
MIRT508877 METTL14 methyltransferase like 14 2 2
MIRT509622 RRP7A ribosomal RNA processing 7 homolog A 2 4
MIRT510104 IRAK3 interleukin 1 receptor associated kinase 3 2 8
MIRT510139 PDGFRA platelet derived growth factor receptor alpha 2 4
MIRT510353 ZNF703 zinc finger protein 703 2 6
MIRT510620 TMEM167A transmembrane protein 167A 2 4
MIRT510786 SF3B3 splicing factor 3b subunit 3 2 6
MIRT511021 NRF1 nuclear respiratory factor 1 2 2
MIRT513925 GHITM growth hormone inducible transmembrane protein 2 2
MIRT514342 DNAH17 dynein axonemal heavy chain 17 2 4
MIRT515015 SUMF2 sulfatase modifying factor 2 2 2
MIRT515246 DUSP28 dual specificity phosphatase 28 2 2
MIRT516202 RPP30 ribonuclease P/MRP subunit p30 2 2
MIRT516435 ADAMTS4 ADAM metallopeptidase with thrombospondin type 1 motif 4 2 4
MIRT516666 ZNF860 zinc finger protein 860 2 4
MIRT518373 ZNF250 zinc finger protein 250 2 2
MIRT518930 LSG1 large 60S subunit nuclear export GTPase 1 2 2
MIRT519676 ZNF70 zinc finger protein 70 2 2
MIRT519902 ZFAND4 zinc finger AN1-type containing 4 2 4
MIRT519945 ZCCHC8 zinc finger CCHC-type containing 8 2 2
MIRT520321 UBXN2A UBX domain protein 2A 2 2
MIRT520606 TMEM41B transmembrane protein 41B 2 2
MIRT520663 TMEM11 transmembrane protein 11 2 2
MIRT520852 SUGT1 SGT1 homolog, MIS12 kinetochore complex assembly cochaperone 2 2
MIRT521443 RAD51 RAD51 recombinase 2 2
MIRT521671 PRKAR2A protein kinase cAMP-dependent type II regulatory subunit alpha 2 2
MIRT522281 NKAP NFKB activating protein 2 2
MIRT522333 NCKIPSD NCK interacting protein with SH3 domain 2 8
MIRT522535 MED28 mediator complex subunit 28 2 6
MIRT523478 GNG4 G protein subunit gamma 4 2 2
MIRT523672 FOPNL FGFR1OP N-terminal like 2 2
MIRT523715 FBXW2 F-box and WD repeat domain containing 2 2 4
MIRT523867 ESCO2 establishment of sister chromatid cohesion N-acetyltransferase 2 2 4
MIRT524043 DNAJC8 DnaJ heat shock protein family (Hsp40) member C8 2 2
MIRT524167 DFFA DNA fragmentation factor subunit alpha 2 2
MIRT524928 ALG10B ALG10B, alpha-1,2-glucosyltransferase 2 2
MIRT526825 PHC1 polyhomeotic homolog 1 2 2
MIRT531017 TDGF1P3 teratocarcinoma-derived growth factor 1 pseudogene 3 2 2
MIRT536085 MBOAT2 membrane bound O-acyltransferase domain containing 2 2 2
MIRT540681 BMP3 bone morphogenetic protein 3 2 2
MIRT541708 TMEM33 transmembrane protein 33 2 2
MIRT541755 KLF8 Kruppel like factor 8 2 2
MIRT541888 LY6G5B lymphocyte antigen 6 family member G5B 2 2
MIRT545714 SPTLC2 serine palmitoyltransferase long chain base subunit 2 2 2
MIRT559054 C19orf47 chromosome 19 open reading frame 47 2 4
MIRT561748 PLAGL2 PLAG1 like zinc finger 2 2 2
MIRT562365 ETV3 ETS variant 3 2 2
MIRT562821 GCFC2 GC-rich sequence DNA-binding factor 2 2 2
MIRT562900 DNAH10OS dynein axonemal heavy chain 10 opposite strand 2 2
MIRT564452 SLC35E2 solute carrier family 35 member E2 2 5
MIRT569111 ONECUT3 one cut homeobox 3 2 2
MIRT569224 SUSD1 sushi domain containing 1 2 2
MIRT570271 ARPC3 actin related protein 2/3 complex subunit 3 2 2
MIRT570498 TFIP11 tuftelin interacting protein 11 2 2
MIRT570844 GPRC5C G protein-coupled receptor class C group 5 member C 2 2
MIRT571311 TPCN2 two pore segment channel 2 2 2
MIRT572077 EXOC8 exocyst complex component 8 2 2
MIRT572116 DNAJC24 DnaJ heat shock protein family (Hsp40) member C24 2 2
MIRT573054 TRIB1 tribbles pseudokinase 1 2 2
MIRT573483 IQSEC3 IQ motif and Sec7 domain 3 2 2
MIRT573656 HES6 hes family bHLH transcription factor 6 2 2
MIRT574343 ZBTB37 zinc finger and BTB domain containing 37 2 2
MIRT576494 Slc35e2 solute carrier family 35, member E2 2 4
MIRT608033 UBLCP1 ubiquitin like domain containing CTD phosphatase 1 2 2
MIRT611326 NANOS1 nanos C2HC-type zinc finger 1 2 2
MIRT613660 KIAA1210 KIAA1210 2 2
MIRT615638 ATF6 activating transcription factor 6 2 2
MIRT618573 RRAD RRAD, Ras related glycolysis inhibitor and calcium channel regulator 2 2
MIRT618865 MBL2 mannose binding lectin 2 2 2
MIRT618962 MRPS16 mitochondrial ribosomal protein S16 2 2
MIRT619172 SLC16A4 solute carrier family 16 member 4 2 2
MIRT620298 AQP6 aquaporin 6 2 2
MIRT620683 RFTN2 raftlin family member 2 2 2
MIRT621637 UBXN2B UBX domain protein 2B 2 2
MIRT621993 STK4 serine/threonine kinase 4 2 2
MIRT622421 NUDT19 nudix hydrolase 19 2 2
MIRT622804 PGAM5 PGAM family member 5, mitochondrial serine/threonine protein phosphatase 2 4
MIRT624786 AGAP9 ArfGAP with GTPase domain, ankyrin repeat and PH domain 9 2 2
MIRT624968 ZNF665 zinc finger protein 665 2 4
MIRT625479 SMAD9 SMAD family member 9 2 2
MIRT626594 ACAA2 acetyl-CoA acyltransferase 2 2 4
MIRT626708 TRIM65 tripartite motif containing 65 2 2
MIRT626975 LINC00598 long intergenic non-protein coding RNA 598 2 2
MIRT627489 STRIP2 striatin interacting protein 2 2 2
MIRT628505 ZNF878 zinc finger protein 878 2 2
MIRT628533 ZNF701 zinc finger protein 701 2 2
MIRT628591 TMEM251 transmembrane protein 251 2 2
MIRT628818 SLC25A34 solute carrier family 25 member 34 2 2
MIRT628896 IGSF6 immunoglobulin superfamily member 6 2 2
MIRT628958 UBE2D4 ubiquitin conjugating enzyme E2 D4 (putative) 2 2
MIRT629005 OSBPL10 oxysterol binding protein like 10 2 2
MIRT629059 KIF1C kinesin family member 1C 2 2
MIRT629192 PAPOLA poly(A) polymerase alpha 2 2
MIRT629346 TMPRSS11BNL TMPRSS11B N-terminal like, pseudogene 2 2
MIRT629447 WIZ widely interspaced zinc finger motifs 2 2
MIRT629696 XKR4 XK related 4 2 2
MIRT629737 SCD5 stearoyl-CoA desaturase 5 2 2
MIRT629896 SPATA5 spermatogenesis associated 5 2 2
MIRT629953 GLP2R glucagon like peptide 2 receptor 2 2
MIRT630023 MTL5 testis expressed metallothionein like protein 2 2
MIRT630181 TLN1 talin 1 2 2
MIRT630325 PAQR5 progestin and adipoQ receptor family member 5 2 2
MIRT630389 MYH9 myosin heavy chain 9 2 4
MIRT630695 EXTL3 exostosin like glycosyltransferase 3 2 2
MIRT631054 LINC00346 long intergenic non-protein coding RNA 346 2 2
MIRT631130 SYNJ2 synaptojanin 2 2 2
MIRT631374 COL4A3BP collagen type IV alpha 3 binding protein 2 2
MIRT631557 TRAF3IP2 TRAF3 interacting protein 2 2 2
MIRT631615 PCDHB11 protocadherin beta 11 2 2
MIRT631935 CDKAL1 CDK5 regulatory subunit associated protein 1 like 1 2 4
MIRT632109 SSR1 signal sequence receptor subunit 1 2 2
MIRT632168 CCL22 C-C motif chemokine ligand 22 2 2
MIRT632445 SGTB small glutamine rich tetratricopeptide repeat containing beta 2 2
MIRT632652 NAV1 neuron navigator 1 2 2
MIRT632688 MTMR10 myotubularin related protein 10 2 2
MIRT632828 IGF1 insulin like growth factor 1 2 2
MIRT632905 FRRS1 ferric chelate reductase 1 2 2
MIRT633027 DNAL1 dynein axonemal light chain 1 2 2
MIRT633379 FBXW8 F-box and WD repeat domain containing 8 2 2
MIRT633440 KLLN killin, p53-regulated DNA replication inhibitor 2 2
MIRT633726 BPNT1 3'(2'), 5'-bisphosphate nucleotidase 1 2 2
MIRT633832 WHAMM WAS protein homolog associated with actin, golgi membranes and microtubules 2 2
MIRT633862 ATP6V1A ATPase H+ transporting V1 subunit A 2 2
MIRT634042 NUP155 nucleoporin 155 2 2
MIRT634266 TIAL1 TIA1 cytotoxic granule associated RNA binding protein like 1 2 2
MIRT634374 RAP2B RAP2B, member of RAS oncogene family 2 2
MIRT634439 PDE7A phosphodiesterase 7A 2 2
MIRT634573 LRIG2 leucine rich repeats and immunoglobulin like domains 2 2 2
MIRT634620 TOR1AIP2 torsin 1A interacting protein 2 2 2
MIRT634693 DSEL dermatan sulfate epimerase-like 2 2
MIRT634768 CD3D CD3d molecule 2 2
MIRT635024 WWTR1 WW domain containing transcription regulator 1 2 2
MIRT635384 NHLRC2 NHL repeat containing 2 2 2
MIRT635577 TTC9C tetratricopeptide repeat domain 9C 2 2
MIRT635793 DNAJC10 DnaJ heat shock protein family (Hsp40) member C10 2 2
MIRT635837 ZNF264 zinc finger protein 264 2 2
MIRT636043 ZSCAN29 zinc finger and SCAN domain containing 29 2 4
MIRT636070 ZNF280C zinc finger protein 280C 2 2
MIRT636697 ARSK arylsulfatase family member K 2 2
MIRT637438 ZNF324B zinc finger protein 324B 2 2
MIRT637582 PLD6 phospholipase D family member 6 2 2
MIRT637672 PPM1D protein phosphatase, Mg2+/Mn2+ dependent 1D 2 2
MIRT637887 SLC19A3 solute carrier family 19 member 3 2 4
MIRT638353 RBMS2 RNA binding motif single stranded interacting protein 2 2 4
MIRT638597 HINT1 histidine triad nucleotide binding protein 1 2 2
MIRT638821 CRTAP cartilage associated protein 2 2
MIRT638871 CEP97 centrosomal protein 97 2 4
MIRT639660 PPEF2 protein phosphatase with EF-hand domain 2 2 4
MIRT640200 TIMM50 translocase of inner mitochondrial membrane 50 2 2
MIRT641592 TNS4 tensin 4 2 2
MIRT644993 POLR2J3 RNA polymerase II subunit J3 2 2
MIRT645059 UQCRQ ubiquinol-cytochrome c reductase complex III subunit VII 2 2
MIRT646948 UPK3BL uroplakin 3B like 1 2 2
MIRT647306 RPH3AL rabphilin 3A like (without C2 domains) 2 2
MIRT648300 SNRPD1 small nuclear ribonucleoprotein D1 polypeptide 2 4
MIRT649043 SLC1A2 solute carrier family 1 member 2 2 2
MIRT649884 SLFN12L schlafen family member 12 like 2 2
MIRT650196 DOCK7 dedicator of cytokinesis 7 2 2
MIRT654789 PRICKLE1 prickle planar cell polarity protein 1 2 2
MIRT655667 NUP43 nucleoporin 43 2 2
MIRT655925 NDUFA4P1 NDUFA4, mitochondrial complex associated pseudogene 1 2 2
MIRT656433 MARCH6 membrane associated ring-CH-type finger 6 2 2
MIRT657713 GPC4 glypican 4 2 2
MIRT659302 CSTF1 cleavage stimulation factor subunit 1 2 2
MIRT659844 CAPZB capping actin protein of muscle Z-line beta subunit 2 2
MIRT660660 ANKFY1 ankyrin repeat and FYVE domain containing 1 2 2
MIRT661308 CPM carboxypeptidase M 2 2
MIRT661473 CHMP1B charged multivesicular body protein 1B 2 2
MIRT661906 EBNA1BP2 EBNA1 binding protein 2 2 2
MIRT662064 ZNF284 zinc finger protein 284 2 2
MIRT662491 ANGPT4 angiopoietin 4 2 2
MIRT662657 LRRC47 leucine rich repeat containing 47 2 2
MIRT662804 MSRB2 methionine sulfoxide reductase B2 2 2
MIRT663164 FGFR1OP FGFR1 oncogene partner 2 2
MIRT663376 ZNF770 zinc finger protein 770 2 4
MIRT663418 ZNF607 zinc finger protein 607 2 2
MIRT663990 WDR75 WD repeat domain 75 2 2
MIRT664157 APOBEC3F apolipoprotein B mRNA editing enzyme catalytic subunit 3F 2 4
MIRT664489 POLR3K RNA polymerase III subunit K 2 2
MIRT665058 CCDC77 coiled-coil domain containing 77 2 2
MIRT665080 CRIPT CXXC repeat containing interactor of PDZ3 domain 2 2
MIRT665420 WDR55 WD repeat domain 55 2 2
MIRT665716 TMTC1 transmembrane and tetratricopeptide repeat containing 1 2 2
MIRT665923 TBC1D19 TBC1 domain family member 19 2 4
MIRT666239 SLC38A7 solute carrier family 38 member 7 2 4
MIRT666840 PPTC7 PTC7 protein phosphatase homolog 2 2
MIRT667378 MOB1B MOB kinase activator 1B 2 2
MIRT667573 LONRF2 LON peptidase N-terminal domain and ring finger 2 2 2
MIRT667894 ING1 inhibitor of growth family member 1 2 2
MIRT667977 HECTD3 HECT domain E3 ubiquitin protein ligase 3 2 2
MIRT668197 GCNT4 glucosaminyl (N-acetyl) transferase 4, core 2 2 2
MIRT668279 FOSL2 FOS like 2, AP-1 transcription factor subunit 2 2
MIRT668386 FAT3 FAT atypical cadherin 3 2 2
MIRT668444 FAM208A family with sequence similarity 208 member A 2 2
MIRT668998 CHORDC1 cysteine and histidine rich domain containing 1 2 2
MIRT669180 CCNF cyclin F 2 2
MIRT669444 ATL3 atlastin GTPase 3 2 2
MIRT669661 ACAP2 ArfGAP with coiled-coil, ankyrin repeat and PH domains 2 2 2
MIRT669890 KIAA0754 KIAA0754 2 4
MIRT669973 SSR3 signal sequence receptor subunit 3 2 2
MIRT670153 SLC29A4 solute carrier family 29 member 4 2 2
MIRT670240 TRIM13 tripartite motif containing 13 2 2
MIRT670274 CBY3 chibby family member 3 2 2
MIRT670358 ULBP3 UL16 binding protein 3 2 4
MIRT670627 BVES blood vessel epicardial substance 2 2
MIRT670731 HOOK3 hook microtubule tethering protein 3 2 2
MIRT670770 TRIM66 tripartite motif containing 66 2 2
MIRT670913 DESI1 desumoylating isopeptidase 1 2 2
MIRT671216 CLSTN1 calsyntenin 1 2 2
MIRT671398 ERCC6L2 ERCC excision repair 6 like 2 2 2
MIRT671427 TOX4 TOX high mobility group box family member 4 2 2
MIRT671654 TRUB2 TruB pseudouridine synthase family member 2 2 4
MIRT671702 PMPCA peptidase, mitochondrial processing alpha subunit 2 2
MIRT672136 PLEKHH1 pleckstrin homology, MyTH4 and FERM domain containing H1 2 2
MIRT672395 SLC10A6 solute carrier family 10 member 6 2 2
MIRT672508 GGCX gamma-glutamyl carboxylase 2 2
MIRT672572 RNF24 ring finger protein 24 2 2
MIRT672789 PPM1L protein phosphatase, Mg2+/Mn2+ dependent 1L 2 2
MIRT673019 RBBP4 RB binding protein 4, chromatin remodeling factor 2 2
MIRT673190 C10orf76 chromosome 10 open reading frame 76 2 2
MIRT673372 ZNF124 zinc finger protein 124 2 2
MIRT673495 MCF2L2 MCF.2 cell line derived transforming sequence-like 2 2 6
MIRT673852 CAPN7 calpain 7 2 2
MIRT673929 ZNF500 zinc finger protein 500 2 2
MIRT673986 MMAB methylmalonic aciduria (cobalamin deficiency) cblB type 2 2
MIRT674076 PLEKHA1 pleckstrin homology domain containing A1 2 2
MIRT674123 RPL7L1 ribosomal protein L7 like 1 2 2
MIRT674297 THAP5 THAP domain containing 5 2 2
MIRT674370 POLR3D RNA polymerase III subunit D 2 2
MIRT674641 NKRF NFKB repressing factor 2 2
MIRT674665 PLCE1 phospholipase C epsilon 1 2 2
MIRT674725 ZNF451 zinc finger protein 451 2 4
MIRT674779 NPR1 natriuretic peptide receptor 1 2 2
MIRT674889 RASSF9 Ras association domain family member 9 2 2
MIRT675017 SNX1 sorting nexin 1 2 2
MIRT675341 KLHL26 kelch like family member 26 2 2
MIRT675416 CLEC7A C-type lectin domain containing 7A 2 2
MIRT675497 HSD17B12 hydroxysteroid 17-beta dehydrogenase 12 2 2
MIRT675615 EHD2 EH domain containing 2 2 2
MIRT675735 AHR aryl hydrocarbon receptor 2 2
MIRT675857 ATP1B4 ATPase Na+/K+ transporting family member beta 4 2 2
MIRT675990 CRKL CRK like proto-oncogene, adaptor protein 2 2
MIRT676213 TMEM91 transmembrane protein 91 2 2
MIRT676406 MRO maestro 2 2
MIRT677299 CPSF2 cleavage and polyadenylation specific factor 2 2 2
MIRT677387 PCNP PEST proteolytic signal containing nuclear protein 2 2
MIRT677859 ABI2 abl interactor 2 2 2
MIRT677965 ITGB3 integrin subunit beta 3 2 2
MIRT678175 CRCP CGRP receptor component 2 2
MIRT678273 PTRH2 peptidyl-tRNA hydrolase 2 2 2
MIRT678665 SCUBE3 signal peptide, CUB domain and EGF like domain containing 3 2 2
MIRT679003 TTC39B tetratricopeptide repeat domain 39B 2 2
MIRT679053 RMDN1 regulator of microtubule dynamics 1 2 2
MIRT679461 RHOF ras homolog family member F, filopodia associated 2 2
MIRT679513 RAB36 RAB36, member RAS oncogene family 2 2
MIRT679914 ZKSCAN3 zinc finger with KRAB and SCAN domains 3 2 2
MIRT680029 OSBPL2 oxysterol binding protein like 2 2 4
MIRT680245 NDUFA7 NADH:ubiquinone oxidoreductase subunit A7 2 2
MIRT680279 AKIP1 A-kinase interacting protein 1 2 2
MIRT680499 PRIM2 DNA primase subunit 2 2 2
MIRT680586 ZNF573 zinc finger protein 573 2 2
MIRT680629 KIAA1456 KIAA1456 2 2
MIRT680819 ARL8B ADP ribosylation factor like GTPase 8B 2 2
MIRT680998 AAED1 AhpC/TSA antioxidant enzyme domain containing 1 2 2
MIRT681122 INTS7 integrator complex subunit 7 2 2
MIRT681161 IBA57 IBA57 homolog, iron-sulfur cluster assembly 2 2
MIRT681221 DUSP19 dual specificity phosphatase 19 2 2
MIRT681304 IKZF3 IKAROS family zinc finger 3 2 2
MIRT681341 BRI3BP BRI3 binding protein 2 2
MIRT681608 F2RL2 coagulation factor II thrombin receptor like 2 2 2
MIRT681779 EIF4A3 eukaryotic translation initiation factor 4A3 2 2
MIRT681892 SLC11A2 solute carrier family 11 member 2 2 2
MIRT682084 ITGA3 integrin subunit alpha 3 2 4
MIRT682139 SMS spermine synthase 2 2
MIRT682217 SAR1A secretion associated Ras related GTPase 1A 2 2
MIRT682367 PHACTR4 phosphatase and actin regulator 4 2 2
MIRT682535 EXOSC2 exosome component 2 2 2
MIRT682618 COX6B1 cytochrome c oxidase subunit 6B1 2 2
MIRT683643 ZNF695 zinc finger protein 695 2 2
MIRT684008 FOLR1 folate receptor 1 2 2
MIRT684442 MFSD4 major facilitator superfamily domain containing 4A 2 2
MIRT684855 ZNF749 zinc finger protein 749 2 2
MIRT684956 MINOS1 mitochondrial inner membrane organizing system 1 2 2
MIRT685044 GEMIN4 gem nuclear organelle associated protein 4 2 2
MIRT685095 DTD2 D-tyrosyl-tRNA deacylase 2 (putative) 2 2
MIRT685382 TNFRSF13C TNF receptor superfamily member 13C 2 2
MIRT685456 CACNG8 calcium voltage-gated channel auxiliary subunit gamma 8 2 2
MIRT685810 SLC27A1 solute carrier family 27 member 1 2 2
MIRT685913 MOCS3 molybdenum cofactor synthesis 3 2 2
MIRT686665 TMEM120B transmembrane protein 120B 2 2
MIRT686955 SFT2D2 SFT2 domain containing 2 2 2
MIRT687118 QPCTL glutaminyl-peptide cyclotransferase like 2 2
MIRT687739 KIAA1328 KIAA1328 2 2
MIRT688063 GLUL glutamate-ammonia ligase 2 2
MIRT688191 FNIP1 folliculin interacting protein 1 2 2
MIRT688769 CDH7 cadherin 7 2 2
MIRT688979 ATP6AP1 ATPase H+ transporting accessory protein 1 2 2
MIRT689572 NUDT7 nudix hydrolase 7 2 2
MIRT689683 TMPRSS12 transmembrane protease, serine 12 2 2
MIRT689930 MANSC1 MANSC domain containing 1 2 2
MIRT690089 PNMA2 paraneoplastic Ma antigen 2 2 2
MIRT690190 C5orf45 MRN complex interacting protein 2 2
MIRT690246 CAMLG calcium modulating ligand 2 2
MIRT690411 FAM71F2 family with sequence similarity 71 member F2 2 2
MIRT690840 DSN1 DSN1 homolog, MIS12 kinetochore complex component 2 2
MIRT690889 FUT2 fucosyltransferase 2 2 2
MIRT691107 ADIPOQ adiponectin, C1Q and collagen domain containing 2 2
MIRT691229 DFNB59 pejvakin 2 2
MIRT691300 ZNF681 zinc finger protein 681 2 2
MIRT691366 GP5 glycoprotein V platelet 2 2
MIRT691797 WARS tryptophanyl-tRNA synthetase 2 2
MIRT692142 CEP104 centrosomal protein 104 2 2
MIRT692572 NCMAP non-compact myelin associated protein 2 2
MIRT692649 ZMYM1 zinc finger MYM-type containing 1 2 2
MIRT692744 NDUFS5 NADH:ubiquinone oxidoreductase subunit S5 2 2
MIRT693092 SCNM1 sodium channel modifier 1 2 2
MIRT693296 SYTL3 synaptotagmin like 3 2 2
MIRT693392 ZNF460 zinc finger protein 460 2 2
MIRT693530 ZNF708 zinc finger protein 708 2 2
MIRT693562 PIGR polymeric immunoglobulin receptor 2 2
MIRT694492 AGBL5 ATP/GTP binding protein like 5 2 2
MIRT694722 LLGL1 LLGL1, scribble cell polarity complex component 2 2
MIRT694866 ZNF417 zinc finger protein 417 2 2
MIRT695070 ZNF17 zinc finger protein 17 2 2
MIRT695451 COX18 COX18, cytochrome c oxidase assembly factor 2 2
MIRT695724 ZNF117 zinc finger protein 117 2 2
MIRT695898 MED16 mediator complex subunit 16 2 2
MIRT696244 UGGT1 UDP-glucose glycoprotein glucosyltransferase 1 2 2
MIRT696259 TACO1 translational activator of cytochrome c oxidase I 2 2
MIRT696512 C3 complement C3 2 2
MIRT696560 TTC21B tetratricopeptide repeat domain 21B 2 2
MIRT696643 AGXT2 alanine--glyoxylate aminotransferase 2 2 2
MIRT696791 DHODH dihydroorotate dehydrogenase (quinone) 2 2
MIRT696819 PLLP plasmolipin 2 2
MIRT697088 GPKOW G-patch domain and KOW motifs 2 2
MIRT697153 INMT indolethylamine N-methyltransferase 2 2
MIRT697202 ZYG11A zyg-11 family member A, cell cycle regulator 2 2
MIRT697322 ZNF641 zinc finger protein 641 2 2
MIRT697578 YME1L1 YME1 like 1 ATPase 2 2
MIRT697619 WSB1 WD repeat and SOCS box containing 1 2 2
MIRT698619 TES testin LIM domain protein 2 2
MIRT698804 STK38 serine/threonine kinase 38 2 2
MIRT698949 SPAST spastin 2 2
MIRT699083 SNRPD3 small nuclear ribonucleoprotein D3 polypeptide 2 2
MIRT699430 SLC1A5 solute carrier family 1 member 5 2 2
MIRT699550 SIT1 signaling threshold regulating transmembrane adaptor 1 2 2
MIRT700324 RAB4A RAB4A, member RAS oncogene family 2 2
MIRT700360 RAB33B RAB33B, member RAS oncogene family 2 2
MIRT700462 PURB purine rich element binding protein B 2 2
MIRT701677 MYADM myeloid associated differentiation marker 2 2
MIRT701757 MSL2 MSL complex subunit 2 2 2
MIRT701977 MIER3 MIER family member 3 2 2
MIRT703178 GPBP1 GC-rich promoter binding protein 1 2 2
MIRT703203 GOLGA3 golgin A3 2 2
MIRT703359 GAPVD1 GTPase activating protein and VPS9 domains 1 2 2
MIRT703425 FYTTD1 forty-two-three domain containing 1 2 2
MIRT703484 FNDC3B fibronectin type III domain containing 3B 2 2
MIRT703590 FBXO45 F-box protein 45 2 2
MIRT703806 EVI5 ecotropic viral integration site 5 2 2
MIRT703915 EPG5 ectopic P-granules autophagy protein 5 homolog 2 2
MIRT704234 DHDDS dehydrodolichyl diphosphate synthase subunit 2 2
MIRT704646 CLCC1 chloride channel CLIC like 1 2 2
MIRT705151 C11orf58 chromosome 11 open reading frame 58 2 2
MIRT705480 ASXL2 additional sex combs like 2, transcriptional regulator 2 2
MIRT705530 ARL10 ADP ribosylation factor like GTPase 10 2 2
MIRT705661 ANKRD40 ankyrin repeat domain 40 2 2
MIRT706144 ZNF674 zinc finger protein 674 2 2
MIRT706473 SNX27 sorting nexin family member 27 2 2
MIRT708254 PGPEP1 pyroglutamyl-peptidase I 2 2
MIRT708838 SCAND3 zinc finger BED-type containing 9 1 1
MIRT710437 BTNL3 butyrophilin like 3 2 2
MIRT711325 DPYSL5 dihydropyrimidinase like 5 2 2
MIRT716151 RBM48 RNA binding motif protein 48 2 2
MIRT717402 ZCCHC24 zinc finger CCHC-type containing 24 2 2
MIRT720866 ADCY5 adenylate cyclase 5 2 2
MIRT722226 ZNF503 zinc finger protein 503 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-1273h-5p Paclitaxel 36314 NSC125973 approved sensitive High Ovarian Cancer cell line (SKOV3)
hsa-miR-1273h-5p Tripterygium wilfordii Hook F resistant tissue
hsa-miR-1273h-5p Cisplatin 5460033 NSC119875 approved sensitive cell line (MGC-803)

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