pre-miRNA Information
pre-miRNA hsa-mir-3622b   
Genomic Coordinates chr8: 27701673 - 27701767
Description Homo sapiens miR-3622b stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-3622b-3p
Sequence 58| UCACCUGAGCUCCCGUGCCUG |78
Evidence Experimental
Experiments Illumina
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1232922758 2 dbSNP
rs530939348 5 dbSNP
rs1439657384 10 dbSNP
rs1157333896 12 dbSNP
rs66683138 14 dbSNP
rs1044808718 15 dbSNP
rs946438979 19 dbSNP
rs551845360 21 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol ZFP30   
Synonyms ZNF745
Description ZFP30 zinc finger protein
Transcript NM_014898   
Expression
Putative miRNA Targets on ZFP30
3'UTR of ZFP30
(miRNA target sites are highlighted)
>ZFP30|NM_014898|3'UTR
   1 TAATTATTAGAACTCTTCCTTTGCGAATTTTATGTTGAGCATAGGAAGTACATTCTAGAGGAAAGGTTTTTGAACGTGGG
  81 AATCCCTTTTGCTTCATGCTCACAACTAAGCATAGGAAGTTTTATTTAAAGGAAAGAATATGTTAATGAACATATAGAAG
 161 CCTTTCATCACCTTTGAAACCATGTTAAACTTTAGGAAATTCATCCTAGAAAAGAACTTTATTACAGGACTGAATGTGGA
 241 AAAGCTTTTGATCTTACCTATTATTATCTCCATATTCTTCCATCTGTGTATATACACACGAAGGTTGCTAGGGAACCACT
 321 TCATTCTGAAAATGTGTAAATGAAAGGAAAGTCATTTAGTCTGCATTTCCTGTAGGAACTGTATTTCAGGGCAACCAGAA
 401 GTTAAGGAGGTAAAGTTCTTCTTTATTAGAAAATTCCAGGCTAATGAATGCAGAAAGAATAATAGAAAATTATATTAGAA
 481 AAACTATTGTGTAACACATAATGAAATAATGGATCTAGGCATGATTCTCTGTACAGGTTGACACCATTCAGTGAAGGTTG
 561 TGAACTTTATAGTGAATAGATGAGACTGACAACGTCTGAACCCACTCATCATCTCAACTTCACAAAAAGCAAGAGAGTAA
 641 AAATTACGTGCCTCCTAATGTGCTACAGTAAGATATACACATCTTGCCAAAAATATTGAACCTGAATTTAAGCCTCAAGA
 721 GCCAACTCCCAGTTTAGAGAAAATTCAAGGAATGGAAGAGTAAATTACATGACACAAAAAGGAGCAATTAAATCTAAAAT
 801 AAGGGTAATTCTACAAGAGGAATCACCTGGTTTCCCAACCAATAAAATGGCATTTTAAGAAATAAGGTGGAACTCCTAGG
 881 TATTGACAGACTTGAGACATCAGTCAAATGCAATGAAACAGTGGTTTTTACTTAGATCATGAGTTGAACAAACATGTAAA
 961 AGAAGAGATACTTAACAATAATTGGGAGAATGGAATATTGACAATATTAGATAATATTAAGAAACTTTGTTATGTGTGAT
1041 AATAGCATTGTGGTTATGTAAAAGTGTATTTGTTAGAGATAATTTCTGAAGTCTATACACAGGAGATGATATATCTGGAA
1121 TGTCCTTTTGTTCATACAAAAGAAAAATGAGGATGAATAACAAGTTTGGCAAAATGATGGTAACCTAAGTCTTGGATACA
1201 TGGTTTTTATTTGTTTTGTTTTTGCTATTCTACTTTTGTGTATTTAAAATTTTCCATGATGTTCTTTTAAAGATCAAATT
1281 ATCCATGAAATTATAGCCAGTTTAAAATGAATTATTTTAAAAAAAATTTCTGGCTGGGCCCGGTGGCTCATGCCTGTAAT
1361 CCCAGCACTTTGGGAGGCCGGTGGGCAGATCATGAGGTCAGGAGTTCGAGACCAGCCTGACCATCATGGTGAAACCTCAT
1441 CTCCACTAAAAATACAAAAATTAGCCAGGCGTGGTCACATGCGCCTGTAATCCCAGCTACTCGGGCAGCTGAGACAGGAG
1521 AATCACTTGAACCCAGGAGGCAGAGGTTGCAGTGAGCCGAGATCACGCCATTGCACTCCAGCCTGGGCAACAAGAGCAAA
1601 ACTCTATCTCAAAGAAAAAAAGAAAATTTCTACATATTAAAACTTGTGGATGTTGCCAAAGCTCTACACATTGGGATTGG
1681 AATATTAATTACACTATAATGACGATAATGTATTCAGGAAGTTAAAATGTAGGTCCACATTTTATTTAGTTGACCTCTCT
1761 ATCTCTATATTATAGTACCCATGGTATGCACCTTTTTTTTTTTTTTTTTTGAGACGGAGTCTCGCTCTTTCGCCCAGGCT
1841 GGCGTGCAGTGGCACAGTCTCGGCTCACTGCAAGCTCTGCCTCCCGGGTTCAAGCCATTCTCCTCCCTCAGACTTCCGAG
1921 TGGCTGGGATTACAGGCGCCCGCCACCACACCAGGTTGATTTTTGTATTTTTAGTAGAGATGGGGTTTCACCATGTTGGC
2001 CAAGCTGGTCTCAACTCCTGACCTCAGGTGATCCACCTGCCTTGGCCTCCCAAGGTGCTGGGATTACAGGCGTGAGCCAC
2081 CATGCCCGACTCTCACTTCATATGTTTAAAGAATGAGTAAAAGAAAGCAATTACTACTGCTAAATGTGGGAAATAATGGA
2161 CTAGACCTGTACTAATATATGGTAGTCACTAGCAACCTGTTGAGCACTTGAAATTGAGTTATTGAGCACTGAAATGTGGC
2241 TAGTCCAAATTCAAATGGTGTTTTTTTGTAAAACACAAGATTCTGAAGACTTAGTTATTTTAAAAAAGTTAAGTATCTCA
2321 ATTTTTCATATTGAGTACATATTGAAATAATATTTTAGATATATTGGTTCAAATAAAATACATTAAAATGAATAACACTT
2401 TTTTGTTTTTAAAATTGTTATAGGAAAATTTATATATGTAGCTCACGTATTTCTATTGTCAGCGCTGGCATAAACAATAA
2481 AAAGTAGACTTGGTTTTTTTGTGTGTGTTTCTTTAAAAGATACCAATATAGTCAAGACCTTTGCAGTTTTGATCACAGAA
2561 ATATGAAAGATTACACAGCTACAGCTATATGAATGATAAAAGTGACAGCTATGGATTTTTAAAGTTATAAGTTGCTATAC
2641 TACATATATGTAATGTGTGTGTGTATAGTGTGTAGGTATATATATTTATATTTATACACACACTATACATGTATTTTAAA
2721 ATATTGAAAATCCAGAATTATTTTATGGTAAAAATTACTAAAATTGACTTCACATGCTGAATGAAGAGAGCCTGAGTAGA
2801 CCAACAAACAAATGAAAAATTAAGACGGTTAGAAGATACGCTTTCTAAAAGAATACATTTAGAATCTAACTTTAAAAAAA
2881 AAAAATCCTACTCTCCTGAGCCAGAGTGGTCTCAGAGAGACTCCGAGAACCTAATTTTTTACAAGTAAAATCTTTGAAGA
2961 ATTGGTAATTGCTAAATTTTTCCAACATACTATTCTACAAGACTAACCTAAAACTGATTATAAGAACTAGGTGAGGAGGG
3041 CTGGCAAAACGAAAATCTAGACATTTTCCGTATGAAGAGAAATCTGGTAATTCTAATTTCTATGGGAAATTATATCCAAC
3121 AGTTTAGAATAGAAAATCATTTATGTGGAATAACTTGGACCAGATCCATCCAGCTTTAATTATATATTTAGATTCTAGGC
3201 ATTCTACCTTCAGAACATCATAATGATAGTAAAAGAGATACGATTCTGGCCCAGTATCATCTCAATTCATGCTTATTGTC
3281 TTTTTTTTTTTTTTTTTTTTAGCTTTCTATGTATTAAGAATGGAATGAATTTTATGTATGTAAAAGTGTAACCCAACACC
3361 TTAAAATTACCTTCTCAAAATTAATAAAGACAGAGTTCTTATAAATGATTGCATCAGTTGGACTTCGGTGATTTCACCGT
3441 GGTCATCCATTATGAACTGTATTTGCTGTTATAATTGGGAAGCCATGATGTTCAGTGTATTACATCATTATATTCCATTT
3521 CTCAAATGGAATATGAAACTTGATAGCATTTGAAACCATTTCCCAGGAAACACTAGTGCTTGATGGTATTTTTAGAAAGC
3601 ATTCTGTGGTTAAATGAGCATATTAAAATTAATAATTAAGAAAATAAAACTATAGCTTCTCCAAATAATGAAGTAATGAG
3681 AGTTTAATTGATTTTATTTAACTTAATGTATCTGAAGCACCTTTTACCCTGTAACTTTCACTCTTAATGCTTGTGAGTAT
3761 GGGATATGAACCCATTTTAACAGATAAGTGCTGTAACCAAAACAGGTGACAGCAAAGGTGGAAAGTTCGGACCTCATGTC
3841 AGGTGGTTAGTTGTGTTGGAAGGTGGATGTGAGGTATGTTTCCCTGGATGTGGCATCATGTTCTAAAGTCACCTGTTCTT
3921 TCTGAATATTGAACTGTTGCTTTTCTGCAGAAATAAAATTTCTGAATCAACAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' guccGUGCCCUCGAGUCCACu 5'
              | |  || |||||||| 
Target 5' tcaaCTCCTGACCTCAGGTGa 3'
2011 - 2031 153.00 -16.90
2
miRNA  3' guCCGUGC---CCUCG-----AGUCCACu 5'
            || | |   ||| |     ||||||| 
Target 5' gtGGAAAGTTCGGACCTCATGTCAGGTGg 3'
3818 - 3846 143.00 -13.90
3
miRNA  3' guCCGU---GCCCUCGAGUCCACu 5'
            ||||   |  ||| ||||| | 
Target 5' tgGGCAGATCATGAGGTCAGGAGt 3'
1382 - 1405 127.00 -16.70
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN31527576 2 COSMIC
COSN31513176 12 COSMIC
COSN31495779 15 COSMIC
COSN31531569 16 COSMIC
COSN13801844 25 COSMIC
COSN31535768 35 COSMIC
COSN30510496 43 COSMIC
COSN7126135 67 COSMIC
COSN30140076 75 COSMIC
COSN31555375 98 COSMIC
COSN30104609 131 COSMIC
COSN31526119 136 COSMIC
COSN31961552 436 COSMIC
COSN23776166 503 COSMIC
COSN7126134 520 COSMIC
COSN29166097 786 COSMIC
COSN16382071 1160 COSMIC
COSN6143828 1232 COSMIC
COSN1767641 1293 COSMIC
COSN20692586 1610 COSMIC
COSN17038240 1633 COSMIC
COSN24107435 1892 COSMIC
COSN8753784 2295 COSMIC
COSN9356666 2540 COSMIC
COSN8753783 3153 COSMIC
COSN6143827 3212 COSMIC
COSN18770616 3301 COSMIC
COSN7126133 3389 COSMIC
COSN24501527 3608 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs753002836 15 dbSNP
rs866787956 18 dbSNP
rs1188691448 19 dbSNP
rs368112923 20 dbSNP
rs1463592054 22 dbSNP
rs199811175 24 dbSNP
rs113545013 25 dbSNP
rs761066275 28 dbSNP
rs1333861447 30 dbSNP
rs1357795681 31 dbSNP
rs368833593 32 dbSNP
rs118140194 37 dbSNP
rs1244069021 38 dbSNP
rs762484342 39 dbSNP
rs1340511781 41 dbSNP
rs893202210 42 dbSNP
rs1420793773 43 dbSNP
rs569521639 47 dbSNP
rs972273001 55 dbSNP
rs1257970865 67 dbSNP
rs1200115917 71 dbSNP
rs548530462 75 dbSNP
rs1197304215 76 dbSNP
rs1320382624 80 dbSNP
rs530000447 83 dbSNP
rs1032844077 96 dbSNP
rs191843817 105 dbSNP
rs911767164 124 dbSNP
rs1477456207 129 dbSNP
rs1170455003 138 dbSNP
rs986038548 142 dbSNP
rs1416508162 145 dbSNP
rs1001314146 146 dbSNP
rs541231185 152 dbSNP
rs1313926450 156 dbSNP
rs1360415434 157 dbSNP
rs1398730572 157 dbSNP
rs953304387 162 dbSNP
rs1327118290 163 dbSNP
rs369701521 166 dbSNP
rs905785331 167 dbSNP
rs1347460071 181 dbSNP
rs755694516 201 dbSNP
rs1234708836 208 dbSNP
rs1028311404 216 dbSNP
rs1011596938 221 dbSNP
rs1218717413 233 dbSNP
rs1261726206 244 dbSNP
rs1045613521 249 dbSNP
rs1450538235 253 dbSNP
rs1196208714 263 dbSNP
rs375188837 272 dbSNP
rs1378983810 275 dbSNP
rs957658146 277 dbSNP
rs1276882432 280 dbSNP
rs1380102490 287 dbSNP
rs1418347013 298 dbSNP
rs1437266682 299 dbSNP
rs146905198 300 dbSNP
rs1386259215 304 dbSNP
rs886077716 330 dbSNP
rs745586239 332 dbSNP
rs1047416474 334 dbSNP
rs930403840 346 dbSNP
rs1441943025 347 dbSNP
rs907371340 348 dbSNP
rs1242141550 352 dbSNP
rs1355618762 353 dbSNP
rs1207524412 358 dbSNP
rs1268881679 359 dbSNP
rs1045902109 361 dbSNP
rs1468605380 379 dbSNP
rs1177639477 382 dbSNP
rs920340705 385 dbSNP
rs1438207089 391 dbSNP
rs1184484769 396 dbSNP
rs1013110914 397 dbSNP
rs1457869058 405 dbSNP
rs974246135 407 dbSNP
rs1396799664 410 dbSNP
rs894745523 415 dbSNP
rs748076193 424 dbSNP
rs942844242 431 dbSNP
rs911480975 438 dbSNP
rs897535859 444 dbSNP
rs1426810656 464 dbSNP
rs780841091 471 dbSNP
rs756898368 486 dbSNP
rs1438467710 488 dbSNP
rs1334924300 489 dbSNP
rs1235846768 490 dbSNP
rs1197532861 491 dbSNP
rs955798411 497 dbSNP
rs1177264402 498 dbSNP
rs1197881696 506 dbSNP
rs1251712234 540 dbSNP
rs142495042 545 dbSNP
rs911708255 564 dbSNP
rs1420734552 565 dbSNP
rs1475570815 578 dbSNP
rs1170129087 590 dbSNP
rs545955687 592 dbSNP
rs988766720 593 dbSNP
rs957483058 594 dbSNP
rs1033024611 596 dbSNP
rs1001328966 597 dbSNP
rs905673754 603 dbSNP
rs1024658156 605 dbSNP
rs1295049548 606 dbSNP
rs575624281 607 dbSNP
rs145374058 616 dbSNP
rs886338572 618 dbSNP
rs1047469802 622 dbSNP
rs1032131611 623 dbSNP
rs930287908 626 dbSNP
rs542159449 633 dbSNP
rs1260205021 636 dbSNP
rs756353123 638 dbSNP
rs1192995286 646 dbSNP
rs1421608227 647 dbSNP
rs751125350 648 dbSNP
rs1171403128 654 dbSNP
rs1377351712 655 dbSNP
rs188137009 659 dbSNP
rs1024400437 673 dbSNP
rs898918100 676 dbSNP
rs894691806 681 dbSNP
rs1449137139 683 dbSNP
rs528469165 686 dbSNP
rs764070300 686 dbSNP
rs1302252550 688 dbSNP
rs1027914644 692 dbSNP
rs149691289 693 dbSNP
rs1231489153 696 dbSNP
rs1360687622 714 dbSNP
rs878964792 719 dbSNP
rs1282957193 727 dbSNP
rs1349173897 737 dbSNP
rs1216539673 742 dbSNP
rs1261036917 746 dbSNP
rs116463208 747 dbSNP
rs1187246201 753 dbSNP
rs1418738764 759 dbSNP
rs1051680823 760 dbSNP
rs934298737 767 dbSNP
rs1179937484 768 dbSNP
rs913476147 769 dbSNP
rs1175227565 783 dbSNP
rs1439825795 790 dbSNP
rs1395472150 791 dbSNP
rs570921253 794 dbSNP
rs1418946483 804 dbSNP
rs1156762869 806 dbSNP
rs988778063 811 dbSNP
rs957331109 820 dbSNP
rs139529933 838 dbSNP
rs915125287 842 dbSNP
rs980129415 848 dbSNP
rs1306013022 874 dbSNP
rs1349054225 875 dbSNP
rs1239962709 883 dbSNP
rs183778216 885 dbSNP
rs1239597008 894 dbSNP
rs1319306148 896 dbSNP
rs1211813982 901 dbSNP
rs935270983 904 dbSNP
rs1216538280 911 dbSNP
rs924624542 913 dbSNP
rs1487595071 915 dbSNP
rs977840402 922 dbSNP
rs191597487 934 dbSNP
rs1253935671 937 dbSNP
rs1213678609 941 dbSNP
rs1438834924 943 dbSNP
rs1284200206 955 dbSNP
rs1410035500 958 dbSNP
rs971432608 961 dbSNP
rs1163408484 978 dbSNP
rs1024347755 979 dbSNP
rs1462633842 983 dbSNP
rs548205342 986 dbSNP
rs1354588239 987 dbSNP
rs1375768696 987 dbSNP
rs958858236 988 dbSNP
rs1376102222 994 dbSNP
rs1014503106 998 dbSNP
rs550015581 1004 dbSNP
rs1332758096 1016 dbSNP
rs1215692774 1021 dbSNP
rs950698757 1024 dbSNP
rs1274015947 1028 dbSNP
rs1026195550 1031 dbSNP
rs1196487339 1032 dbSNP
rs994523089 1032 dbSNP
rs1234419831 1034 dbSNP
rs189011356 1034 dbSNP
rs1181215798 1038 dbSNP
rs1411624693 1039 dbSNP
rs1394230958 1053 dbSNP
rs1165077833 1057 dbSNP
rs1399056441 1063 dbSNP
rs760580413 1064 dbSNP
rs995081521 1068 dbSNP
rs752401609 1077 dbSNP
rs1381010607 1078 dbSNP
rs898803746 1079 dbSNP
rs1443467114 1080 dbSNP
rs1284107104 1084 dbSNP
rs1038706674 1091 dbSNP
rs1235176357 1095 dbSNP
rs1294020926 1098 dbSNP
rs565990248 1099 dbSNP
rs1007331411 1101 dbSNP
rs1160151682 1106 dbSNP
rs890197095 1108 dbSNP
rs1419777372 1117 dbSNP
rs765126614 1123 dbSNP
rs150926484 1140 dbSNP
rs1050178411 1143 dbSNP
rs913490885 1145 dbSNP
rs184033086 1148 dbSNP
rs1053278093 1149 dbSNP
rs995957778 1150 dbSNP
rs1189063101 1151 dbSNP
rs1486635552 1153 dbSNP
rs893624926 1158 dbSNP
rs936019096 1160 dbSNP
rs1261298233 1161 dbSNP
rs1476597754 1162 dbSNP
rs111727037 1169 dbSNP
rs193064261 1172 dbSNP
rs1410855194 1187 dbSNP
rs1264958556 1192 dbSNP
rs970207282 1195 dbSNP
rs1374131883 1200 dbSNP
rs1417188544 1213 dbSNP
rs1242469438 1214 dbSNP
rs1428806266 1217 dbSNP
rs923874869 1217 dbSNP
rs1272131883 1224 dbSNP
rs1323400641 1224 dbSNP
rs1340382333 1225 dbSNP
rs1041662900 1227 dbSNP
rs1277964007 1230 dbSNP
rs767731584 1237 dbSNP
rs1349890954 1238 dbSNP
rs992683659 1249 dbSNP
rs1211511498 1251 dbSNP
rs1313412594 1256 dbSNP
rs950505986 1259 dbSNP
rs1194753854 1278 dbSNP
rs1217772977 1281 dbSNP
rs546315964 1282 dbSNP
rs1477508464 1286 dbSNP
rs1338242062 1290 dbSNP
rs1173353103 1293 dbSNP
rs1299586243 1294 dbSNP
rs1026247318 1303 dbSNP
rs1174813755 1307 dbSNP
rs994784174 1318 dbSNP
rs963272616 1319 dbSNP
rs1320415571 1327 dbSNP
rs1327208281 1327 dbSNP
rs77459174 1329 dbSNP
rs1436043041 1330 dbSNP
rs1017318618 1333 dbSNP
rs1459035522 1335 dbSNP
rs761824794 1337 dbSNP
rs1372902370 1341 dbSNP
rs991531630 1342 dbSNP
rs1285187959 1352 dbSNP
rs1166370047 1368 dbSNP
rs1477661202 1369 dbSNP
rs1421950181 1370 dbSNP
rs1284367584 1379 dbSNP
rs958805249 1380 dbSNP
rs530902808 1381 dbSNP
rs890217691 1382 dbSNP
rs1218710528 1384 dbSNP
rs1455847696 1386 dbSNP
rs1194707856 1391 dbSNP
rs75926656 1393 dbSNP
rs1363697902 1399 dbSNP
rs1030454168 1401 dbSNP
rs143965932 1407 dbSNP
rs769114195 1413 dbSNP
rs1489539759 1426 dbSNP
rs1273738958 1427 dbSNP
rs1404906078 1429 dbSNP
rs1324118655 1430 dbSNP
rs1008532570 1434 dbSNP
rs1441319631 1440 dbSNP
rs1308294837 1443 dbSNP
rs749844410 1446 dbSNP
rs1333856198 1447 dbSNP
rs1241117859 1455 dbSNP
rs1279567601 1466 dbSNP
rs891937439 1470 dbSNP
rs541822357 1471 dbSNP
rs1211345760 1472 dbSNP
rs1197943778 1475 dbSNP
rs1053206459 1478 dbSNP
rs1214664138 1481 dbSNP
rs1315773967 1482 dbSNP
rs574449674 1483 dbSNP
rs559634216 1486 dbSNP
rs1330123785 1487 dbSNP
rs1298808239 1489 dbSNP
rs1388001536 1491 dbSNP
rs1390832089 1495 dbSNP
rs995916495 1499 dbSNP
rs904781036 1502 dbSNP
rs1465581275 1503 dbSNP
rs893562321 1506 dbSNP
rs1297334755 1510 dbSNP
rs1394078998 1515 dbSNP
rs1398504180 1517 dbSNP
rs1329446107 1519 dbSNP
rs1339859252 1523 dbSNP
rs1230892738 1535 dbSNP
rs1294630684 1545 dbSNP
rs1053605181 1549 dbSNP
rs1044438058 1554 dbSNP
rs999770329 1556 dbSNP
rs201406710 1558 dbSNP
rs1197976798 1559 dbSNP
rs775699396 1566 dbSNP
rs917358055 1567 dbSNP
rs1185830615 1568 dbSNP
rs1420128793 1572 dbSNP
rs1475618964 1576 dbSNP
rs1434918043 1578 dbSNP
rs1170006367 1582 dbSNP
rs1371618245 1583 dbSNP
rs1463314609 1592 dbSNP
rs1168322056 1601 dbSNP
rs1253723324 1604 dbSNP
rs1314120352 1606 dbSNP
rs1412884914 1606 dbSNP
rs770256180 1606 dbSNP
rs929362854 1615 dbSNP
rs1177883490 1617 dbSNP
rs77853840 1622 dbSNP
rs919115166 1623 dbSNP
rs1230020595 1625 dbSNP
rs1252278829 1632 dbSNP
rs1456412559 1633 dbSNP
rs16958863 1647 dbSNP
rs1209359155 1650 dbSNP
rs1196143438 1656 dbSNP
rs1260315024 1662 dbSNP
rs1486033257 1664 dbSNP
rs1344117768 1666 dbSNP
rs1186055024 1667 dbSNP
rs1259878021 1667 dbSNP
rs1430556313 1671 dbSNP
rs1193576292 1672 dbSNP
rs963321564 1688 dbSNP
rs1017903082 1692 dbSNP
rs1175421941 1693 dbSNP
rs1376042521 1694 dbSNP
rs76524415 1701 dbSNP
rs16958861 1703 dbSNP
rs937412915 1704 dbSNP
rs1363574817 1705 dbSNP
rs1234977557 1709 dbSNP
rs1382449188 1711 dbSNP
rs920694229 1735 dbSNP
rs62108262 1739 dbSNP
rs1283063266 1745 dbSNP
rs1349286799 1757 dbSNP
rs1215115404 1760 dbSNP
rs1030096342 1762 dbSNP
rs1252668810 1763 dbSNP
rs769786677 1763 dbSNP
rs1195306058 1767 dbSNP
rs537191078 1775 dbSNP
rs529724245 1778 dbSNP
rs1346459419 1779 dbSNP
rs139119062 1784 dbSNP
rs1028637021 1788 dbSNP
rs554665753 1789 dbSNP
rs1020407596 1790 dbSNP
rs1331530626 1792 dbSNP
rs989057250 1793 dbSNP
rs368442097 1803 dbSNP
rs1401954955 1810 dbSNP
rs1442530586 1811 dbSNP
rs554279429 1811 dbSNP
rs575938917 1811 dbSNP
rs60890146 1811 dbSNP
rs1170983440 1812 dbSNP
rs1209491868 1812 dbSNP
rs1318812474 1812 dbSNP
rs1467796837 1815 dbSNP
rs1467332171 1816 dbSNP
rs1395728215 1822 dbSNP
rs995862612 1823 dbSNP
rs1480230179 1824 dbSNP
rs1031840468 1831 dbSNP
rs1175406578 1831 dbSNP
rs565652922 1832 dbSNP
rs1415158325 1835 dbSNP
rs1462715818 1836 dbSNP
rs1000312596 1838 dbSNP
rs904793742 1839 dbSNP
rs771318756 1843 dbSNP
rs188458014 1844 dbSNP
rs1376212737 1853 dbSNP
rs1229035522 1858 dbSNP
rs902342060 1859 dbSNP
rs895832086 1861 dbSNP
rs1235373618 1862 dbSNP
rs146259408 1862 dbSNP
rs1348115391 1873 dbSNP
rs929415538 1877 dbSNP
rs919331308 1878 dbSNP
rs973238534 1879 dbSNP
rs937341189 1880 dbSNP
rs941802684 1881 dbSNP
rs572177185 1885 dbSNP
rs1409716881 1887 dbSNP
rs940822874 1888 dbSNP
rs61742896 1902 dbSNP
rs1340200501 1910 dbSNP
rs1410982642 1916 dbSNP
rs531483645 1917 dbSNP
rs987653318 1918 dbSNP
rs954638367 1923 dbSNP
rs1376273421 1925 dbSNP
rs933538777 1930 dbSNP
rs1274884977 1937 dbSNP
rs922183101 1937 dbSNP
rs1417861977 1938 dbSNP
rs1030437756 1941 dbSNP
rs987765919 1942 dbSNP
rs1278195180 1946 dbSNP
rs1486361057 1950 dbSNP
rs1159025489 1954 dbSNP
rs956489805 1955 dbSNP
rs182412965 1956 dbSNP
rs957934636 1958 dbSNP
rs1032018481 1960 dbSNP
rs1185081719 1963 dbSNP
rs1366686697 1975 dbSNP
rs1173545562 1989 dbSNP
rs1374223559 1990 dbSNP
rs1436628763 1993 dbSNP
rs1000323916 1994 dbSNP
rs563448979 1999 dbSNP
rs1326024979 2009 dbSNP
rs1271651966 2012 dbSNP
rs1428906076 2012 dbSNP
rs1365660883 2016 dbSNP
rs1233371589 2017 dbSNP
rs1278078961 2027 dbSNP
rs1349997953 2028 dbSNP
rs1023119575 2037 dbSNP
rs7253174 2043 dbSNP
rs1444852320 2044 dbSNP
rs896065959 2052 dbSNP
rs1057449634 2053 dbSNP
rs1214010444 2054 dbSNP
rs1013391124 2061 dbSNP
rs1193444816 2065 dbSNP
rs1284376169 2066 dbSNP
rs1393766359 2069 dbSNP
rs895025570 2071 dbSNP
rs1356228592 2072 dbSNP
rs371162106 2076 dbSNP
rs530057102 2087 dbSNP
rs1283000268 2088 dbSNP
rs7254170 2089 dbSNP
rs1356507179 2092 dbSNP
rs1297754799 2100 dbSNP
rs1233881044 2117 dbSNP
rs1278956258 2118 dbSNP
rs1347906382 2128 dbSNP
rs995469454 2133 dbSNP
rs897913945 2134 dbSNP
rs541743305 2137 dbSNP
rs146594199 2143 dbSNP
rs1319027928 2148 dbSNP
rs565526714 2153 dbSNP
rs1251538195 2154 dbSNP
rs1453765971 2157 dbSNP
rs1200201306 2159 dbSNP
rs941858191 2161 dbSNP
rs1037729464 2162 dbSNP
rs1468649787 2163 dbSNP
rs1161518563 2166 dbSNP
rs1461130486 2171 dbSNP
rs572454476 2178 dbSNP
rs940744683 2179 dbSNP
rs1388473776 2181 dbSNP
rs35971646 2188 dbSNP
rs1328075888 2190 dbSNP
rs1333947346 2191 dbSNP
rs1240513257 2201 dbSNP
rs1288455026 2204 dbSNP
rs73621506 2205 dbSNP
rs1051895795 2213 dbSNP
rs1274736852 2217 dbSNP
rs1358896784 2222 dbSNP
rs1210865819 2223 dbSNP
rs1250399195 2227 dbSNP
rs1436599551 2237 dbSNP
rs1184363121 2244 dbSNP
rs1252628069 2246 dbSNP
rs1474957341 2261 dbSNP
rs576546485 2268 dbSNP
rs933485065 2268 dbSNP
rs138238040 2270 dbSNP
rs1422674360 2276 dbSNP
rs147067778 2278 dbSNP
rs868610878 2279 dbSNP
rs1411603492 2283 dbSNP
rs1354267565 2291 dbSNP
rs754735668 2294 dbSNP
rs1294726056 2299 dbSNP
rs936963307 2302 dbSNP
rs924927902 2313 dbSNP
rs1251116843 2315 dbSNP
rs1337941053 2315 dbSNP
rs925052997 2317 dbSNP
rs1220161194 2321 dbSNP
rs1207908313 2331 dbSNP
rs977798708 2333 dbSNP
rs966410418 2335 dbSNP
rs1024681673 2358 dbSNP
rs1258480735 2359 dbSNP
rs572108664 2363 dbSNP
rs1424637176 2366 dbSNP
rs1192132675 2394 dbSNP
rs575034713 2405 dbSNP
rs1169129691 2408 dbSNP
rs959189361 2408 dbSNP
rs190138766 2411 dbSNP
rs1432294705 2417 dbSNP
rs1379366679 2421 dbSNP
rs753589526 2421 dbSNP
rs1217228486 2423 dbSNP
rs1381303741 2433 dbSNP
rs1364320282 2434 dbSNP
rs1293078354 2436 dbSNP
rs1325032904 2440 dbSNP
rs995808435 2443 dbSNP
rs1298947376 2446 dbSNP
rs962684318 2447 dbSNP
rs553795408 2455 dbSNP
rs1333563163 2457 dbSNP
rs1271052339 2459 dbSNP
rs1435842746 2461 dbSNP
rs969145569 2463 dbSNP
rs754546425 2464 dbSNP
rs1004890553 2478 dbSNP
rs1013078199 2489 dbSNP
rs886490417 2493 dbSNP
rs1051843078 2501 dbSNP
rs997641308 2514 dbSNP
rs1359227533 2516 dbSNP
rs1452497886 2522 dbSNP
rs866681742 2523 dbSNP
rs767678424 2526 dbSNP
rs960575246 2535 dbSNP
rs1286731326 2556 dbSNP
rs1035902931 2558 dbSNP
rs1039233313 2561 dbSNP
rs1168235970 2563 dbSNP
rs936890319 2568 dbSNP
rs925575679 2576 dbSNP
rs1419780294 2587 dbSNP
rs1190273462 2593 dbSNP
rs1238485374 2598 dbSNP
rs1476719996 2610 dbSNP
rs1042406261 2611 dbSNP
rs993514110 2614 dbSNP
rs538973203 2615 dbSNP
rs1209072037 2621 dbSNP
rs1252148979 2624 dbSNP
rs1467019049 2632 dbSNP
rs1192833029 2634 dbSNP
rs374099890 2639 dbSNP
rs1469279619 2643 dbSNP
rs1258032824 2644 dbSNP
rs1417967995 2648 dbSNP
rs7249524 2650 dbSNP
rs889205398 2655 dbSNP
rs1457453583 2659 dbSNP
rs1287094826 2665 dbSNP
rs534332656 2665 dbSNP
rs536744478 2665 dbSNP
rs959137441 2665 dbSNP
rs1273899498 2668 dbSNP
rs1050723062 2670 dbSNP
rs1295780907 2674 dbSNP
rs1368969860 2675 dbSNP
rs1390854238 2676 dbSNP
rs1286560202 2679 dbSNP
rs1331419104 2680 dbSNP
rs113811864 2682 dbSNP
rs1342901004 2686 dbSNP
rs781076151 2686 dbSNP
rs1305764166 2694 dbSNP
rs757265587 2697 dbSNP
rs1480280100 2698 dbSNP
rs962910668 2704 dbSNP
rs1015520138 2706 dbSNP
rs1329302473 2710 dbSNP
rs1444019051 2711 dbSNP
rs1004168605 2724 dbSNP
rs60938427 2731 dbSNP
rs950693751 2732 dbSNP
rs1354907453 2738 dbSNP
rs1030362103 2740 dbSNP
rs10409605 2745 dbSNP
rs1350929083 2754 dbSNP
rs1306192105 2760 dbSNP
rs1461936352 2760 dbSNP
rs139045517 2767 dbSNP
rs530119187 2768 dbSNP
rs1292867542 2769 dbSNP
rs935234652 2771 dbSNP
rs924972762 2774 dbSNP
rs1377282815 2778 dbSNP
rs1039588026 2782 dbSNP
rs1396550401 2797 dbSNP
rs866330101 2804 dbSNP
rs979064142 2807 dbSNP
rs1290344601 2813 dbSNP
rs969577277 2819 dbSNP
rs1202932835 2825 dbSNP
rs60165308 2826 dbSNP
rs556590706 2827 dbSNP
rs1238097548 2835 dbSNP
rs185660516 2839 dbSNP
rs532496284 2840 dbSNP
rs565454614 2841 dbSNP
rs917562896 2842 dbSNP
rs1233841093 2846 dbSNP
rs1056083805 2855 dbSNP
rs1209635423 2857 dbSNP
rs972339018 2858 dbSNP
rs962272392 2862 dbSNP
rs1016314765 2869 dbSNP
rs1310635279 2870 dbSNP
rs544064404 2871 dbSNP
rs889207826 2872 dbSNP
rs10407568 2873 dbSNP
rs200745815 2874 dbSNP
rs997778095 2874 dbSNP
rs908413070 2885 dbSNP
rs1225965664 2886 dbSNP
rs542269078 2886 dbSNP
rs955304674 2886 dbSNP
rs770211019 2887 dbSNP
rs1209470984 2888 dbSNP
rs1052200159 2895 dbSNP
rs561449480 2896 dbSNP
rs1225411421 2899 dbSNP
rs10407738 2900 dbSNP
rs1443722475 2901 dbSNP
rs1210386330 2906 dbSNP
rs374165393 2911 dbSNP
rs767242469 2912 dbSNP
rs1241204404 2919 dbSNP
rs1030308348 2924 dbSNP
rs1302011558 2925 dbSNP
rs1392516519 2927 dbSNP
rs903771589 2928 dbSNP
rs976100179 2935 dbSNP
rs1445604283 2941 dbSNP
rs1376882350 2951 dbSNP
rs1335080795 2953 dbSNP
rs1344872909 2961 dbSNP
rs1043791511 2964 dbSNP
rs1432589282 2964 dbSNP
rs1313183948 2974 dbSNP
rs1365769589 2979 dbSNP
rs1418491062 2991 dbSNP
rs542782251 2993 dbSNP
rs1017696060 2995 dbSNP
rs759891795 3005 dbSNP
rs1421431284 3020 dbSNP
rs1346474372 3026 dbSNP
rs1409408428 3038 dbSNP
rs1001391110 3040 dbSNP
rs1181619589 3045 dbSNP
rs916332211 3050 dbSNP
rs182175095 3051 dbSNP
rs1250293707 3062 dbSNP
rs939083734 3069 dbSNP
rs190921999 3070 dbSNP
rs896752751 3072 dbSNP
rs187284739 3074 dbSNP
rs1218084122 3084 dbSNP
rs937688718 3087 dbSNP
rs577534978 3095 dbSNP
rs1389102003 3098 dbSNP
rs962324028 3099 dbSNP
rs1439975847 3108 dbSNP
rs1016493492 3112 dbSNP
rs556208992 3121 dbSNP
rs985199549 3122 dbSNP
rs1293467207 3124 dbSNP
rs1229849258 3127 dbSNP
rs1268432905 3130 dbSNP
rs1399038089 3135 dbSNP
rs1209662810 3138 dbSNP
rs1265839142 3139 dbSNP
rs904892798 3145 dbSNP
rs1358029298 3152 dbSNP
rs1251182233 3154 dbSNP
rs538124136 3155 dbSNP
rs1029506476 3164 dbSNP
rs1184602807 3167 dbSNP
rs7245750 3183 dbSNP
rs371074631 3184 dbSNP
rs901931856 3190 dbSNP
rs1161263818 3195 dbSNP
rs1392717389 3198 dbSNP
rs1453914834 3206 dbSNP
rs1030825431 3216 dbSNP
rs999281088 3217 dbSNP
rs182216794 3221 dbSNP
rs536395274 3222 dbSNP
rs16974372 3223 dbSNP
rs922515116 3228 dbSNP
rs1354462010 3235 dbSNP
rs1244459596 3239 dbSNP
rs976046421 3241 dbSNP
rs964733161 3242 dbSNP
rs1482105088 3253 dbSNP
rs1188870182 3254 dbSNP
rs547835211 3256 dbSNP
rs947722926 3257 dbSNP
rs1477598918 3260 dbSNP
rs1018060706 3269 dbSNP
rs1206957833 3271 dbSNP
rs1486273367 3272 dbSNP
rs1264719195 3273 dbSNP
rs1252746347 3274 dbSNP
rs1013427878 3275 dbSNP
rs1336615828 3278 dbSNP
rs1273618874 3279 dbSNP
rs1217830054 3280 dbSNP
rs1473036538 3281 dbSNP
rs79396734 3282 dbSNP
rs77133931 3283 dbSNP
rs1167859365 3287 dbSNP
rs1368673931 3290 dbSNP
rs1431063723 3291 dbSNP
rs1308135717 3301 dbSNP
rs1393936317 3301 dbSNP
rs1400981240 3301 dbSNP
rs1491324238 3301 dbSNP
rs572288890 3301 dbSNP
rs59250127 3301 dbSNP
rs66479119 3301 dbSNP
rs763716121 3301 dbSNP
rs776612710 3301 dbSNP
rs979521306 3301 dbSNP
rs1337935426 3302 dbSNP
rs1483004303 3302 dbSNP
rs150448091 3302 dbSNP
rs1198931231 3303 dbSNP
rs1349417412 3305 dbSNP
rs1297349976 3307 dbSNP
rs1382299438 3309 dbSNP
rs1451258928 3311 dbSNP
rs1168605322 3315 dbSNP
rs867159677 3322 dbSNP
rs1366300577 3327 dbSNP
rs532422492 3328 dbSNP
rs765552837 3329 dbSNP
rs759737497 3331 dbSNP
rs1464160889 3334 dbSNP
rs968564582 3347 dbSNP
rs1293402419 3352 dbSNP
rs1460363614 3359 dbSNP
rs1397370099 3371 dbSNP
rs1453790622 3375 dbSNP
rs1320316563 3382 dbSNP
rs1166073570 3384 dbSNP
rs1021048911 3386 dbSNP
rs776819276 3391 dbSNP
rs1465485496 3392 dbSNP
rs566732350 3396 dbSNP
rs1056517733 3404 dbSNP
rs896710173 3410 dbSNP
rs939123941 3411 dbSNP
rs571594207 3413 dbSNP
rs548506492 3426 dbSNP
rs972235696 3427 dbSNP
rs940799526 3429 dbSNP
rs1191627443 3437 dbSNP
rs1469740446 3438 dbSNP
rs904841071 3439 dbSNP
rs1253601721 3453 dbSNP
rs1377779432 3454 dbSNP
rs777406989 3457 dbSNP
rs1038473550 3459 dbSNP
rs1337286822 3461 dbSNP
rs1252636489 3465 dbSNP
rs1386906281 3468 dbSNP
rs1437776520 3469 dbSNP
rs941091418 3472 dbSNP
rs868089884 3475 dbSNP
rs886878376 3483 dbSNP
rs1311056800 3497 dbSNP
rs1303503977 3502 dbSNP
rs532031621 3506 dbSNP
rs1442523729 3513 dbSNP
rs1266543852 3514 dbSNP
rs1373809281 3522 dbSNP
rs372673474 3523 dbSNP
rs1209170949 3524 dbSNP
rs1264738349 3526 dbSNP
rs1327240344 3540 dbSNP
rs985031934 3543 dbSNP
rs1192374073 3548 dbSNP
rs1446421291 3563 dbSNP
rs933819761 3567 dbSNP
rs1394798937 3573 dbSNP
rs1179532752 3580 dbSNP
rs953745289 3583 dbSNP
rs922462548 3588 dbSNP
rs921995048 3597 dbSNP
rs1349741545 3610 dbSNP
rs1456850879 3614 dbSNP
rs561509833 3616 dbSNP
rs966107792 3618 dbSNP
rs1346222599 3620 dbSNP
rs1031005774 3623 dbSNP
rs117974992 3625 dbSNP
rs967824206 3626 dbSNP
rs1455684672 3628 dbSNP
rs1022534220 3632 dbSNP
rs1286654610 3635 dbSNP
rs1253547484 3638 dbSNP
rs910538215 3640 dbSNP
rs979852105 3648 dbSNP
rs1223671492 3650 dbSNP
rs1319769025 3650 dbSNP
rs968134615 3650 dbSNP
rs1482430671 3651 dbSNP
rs913988043 3651 dbSNP
rs1202437151 3655 dbSNP
rs1253476972 3656 dbSNP
rs988220904 3656 dbSNP
rs1178079048 3663 dbSNP
rs1252440555 3665 dbSNP
rs960861525 3670 dbSNP
rs1012187591 3673 dbSNP
rs1482710476 3686 dbSNP
rs1422504613 3690 dbSNP
rs764859627 3707 dbSNP
rs527850579 3712 dbSNP
rs1366784290 3720 dbSNP
rs1429128469 3721 dbSNP
rs1306289558 3724 dbSNP
rs1235844018 3729 dbSNP
rs560009009 3730 dbSNP
rs1443192748 3739 dbSNP
rs529686926 3743 dbSNP
rs1056168974 3749 dbSNP
rs1003178458 3758 dbSNP
rs1376663144 3761 dbSNP
rs1229872504 3763 dbSNP
rs1016578036 3764 dbSNP
rs1341406747 3774 dbSNP
rs190117141 3785 dbSNP
rs4802069 3788 dbSNP
rs1334309586 3797 dbSNP
rs556110104 3803 dbSNP
rs186140922 3809 dbSNP
rs940853359 3810 dbSNP
rs573595524 3818 dbSNP
rs1046838818 3821 dbSNP
rs997974688 3822 dbSNP
rs909412039 3823 dbSNP
rs1449413301 3828 dbSNP
rs113297905 3829 dbSNP
rs932284574 3833 dbSNP
rs533753247 3837 dbSNP
rs922142929 3842 dbSNP
rs1410645576 3848 dbSNP
rs1333730610 3853 dbSNP
rs1357668909 3859 dbSNP
rs1437615712 3860 dbSNP
rs976057323 3862 dbSNP
rs369637743 3863 dbSNP
rs1436591486 3866 dbSNP
rs965991080 3867 dbSNP
rs942601249 3885 dbSNP
rs1364297542 3895 dbSNP
rs924038673 3896 dbSNP
rs978173642 3898 dbSNP
rs925878495 3903 dbSNP
rs1339436370 3905 dbSNP
rs968084695 3909 dbSNP
rs1276004548 3925 dbSNP
rs1365511636 3931 dbSNP
rs1313616533 3936 dbSNP
rs1022169319 3937 dbSNP
rs1182238529 3953 dbSNP
rs1244121172 3959 dbSNP
rs1464784105 3961 dbSNP
rs1187194059 3968 dbSNP
rs532137532 3971 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HEK293S
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in GSM1084072. RNA binding protein: AGO2. Condition:CLIP_nohippuristanol_rep1_AbnovaAb ...

- Karginov FV; Hannon GJ, 2013, Genes & development.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' guccgugcccucgaGUCCACu 5'
                        |||| | 
Target 5' -----uggcugaggCAGGAGa 3'
1 - 16
Article - Karginov FV; Hannon GJ
- Genes & development, 2013
When adapting to environmental stress, cells attenuate and reprogram their translational output. In part, these altered translation profiles are established through changes in the interactions between RNA-binding proteins and mRNAs. The Argonaute 2 (Ago2)/microRNA (miRNA) machinery has been shown to participate in stress-induced translational up-regulation of a particular mRNA, CAT-1; however, a detailed, transcriptome-wide understanding of the involvement of Ago2 in the process has been lacking. Here, we profiled the overall changes in Ago2-mRNA interactions upon arsenite stress by cross-linking immunoprecipitation (CLIP) followed by high-throughput sequencing (CLIP-seq). Ago2 displayed a significant remodeling of its transcript occupancy, with the majority of 3' untranslated region (UTR) and coding sequence (CDS) sites exhibiting stronger interaction. Interestingly, target sites that were destined for release from Ago2 upon stress were depleted in miRNA complementarity signatures, suggesting an alternative mode of interaction. To compare the changes in Ago2-binding patterns across transcripts with changes in their translational states, we measured mRNA profiles on ribosome/polysome gradients by RNA sequencing (RNA-seq). Increased Ago2 occupancy correlated with stronger repression of translation for those mRNAs, as evidenced by a shift toward lighter gradient fractions upon stress, while release of Ago2 was associated with the limited number of transcripts that remained translated. Taken together, these data point to a role for Ago2 and the mammalian miRNAs in mediating the translational component of the stress response.
LinkOut: [PMID: 23824327]
CLIP-seq Support 1 for dataset GSM4903834
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_b
Location of target site NM_014898 | 3UTR | GGUGAUCCACCUGCCUUGGCCUCCCAAGGUGCUGGGAUUACAG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM4903835
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_c
Location of target site NM_014898 | 3UTR | CAGGUGAUCCACCUGCCUUGGCCUCCCAAGGUGCUGGGAUUACAG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 3 for dataset GSM4903836
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / 124_TD_21_a
Location of target site NM_014898 | 3UTR | CCUGACCUCAGGUGAUCCACCUGCCUUGGCCUCCCAAGGUGCUGGGAUUACAG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 4 for dataset GSM4903838
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / 124_TD_21_c
Location of target site NM_014898 | 3UTR | UGAUCCACCUGCCUUGGCCUCCCAAGGUGCUGGGAUUACAG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 5 for dataset GSM1084072
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_nohippuristanol_rep1_AbnovaAb
Location of target site ENST00000392144.1 | 3UTR | UGGCUGAGGCAGGAGAAUGGC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
THCA -0.096 0.42 0.000 0.5 7 Click to see details
THCA -0.096 0.42 0.000 0.5 7 Click to see details
THCA -0.096 0.42 0.000 0.5 7 Click to see details
THCA -0.096 0.42 0.000 0.5 7 Click to see details
THCA -0.096 0.42 0.000 0.5 7 Click to see details
THCA -0.096 0.42 0.000 0.5 7 Click to see details
102 hsa-miR-3622b-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT076713 NUFIP2 NUFIP2, FMR1 interacting protein 2 2 2
MIRT080212 PRKACB protein kinase cAMP-activated catalytic subunit beta 2 2
MIRT081398 GTPBP3 GTP binding protein 3, mitochondrial 2 2
MIRT107158 ZBTB43 zinc finger and BTB domain containing 43 2 2
MIRT254071 BACH1 BTB domain and CNC homolog 1 2 2
MIRT409790 FOXO3 forkhead box O3 2 2
MIRT448679 MAPK9 mitogen-activated protein kinase 9 2 2
MIRT450206 ABHD15 abhydrolase domain containing 15 2 2
MIRT486621 PDK3 pyruvate dehydrogenase kinase 3 2 2
MIRT489267 TTLL1 tubulin tyrosine ligase like 1 2 2
MIRT493117 MKNK2 MAP kinase interacting serine/threonine kinase 2 2 4
MIRT494570 BAK1 BCL2 antagonist/killer 1 2 2
MIRT497395 RALY RALY heterogeneous nuclear ribonucleoprotein 2 2
MIRT504900 CCDC86 coiled-coil domain containing 86 2 2
MIRT505192 USP46 ubiquitin specific peptidase 46 2 4
MIRT506522 MSANTD4 Myb/SANT DNA binding domain containing 4 with coiled-coils 2 6
MIRT508162 ABCC5 ATP binding cassette subfamily C member 5 2 8
MIRT508545 PARVG parvin gamma 2 4
MIRT509850 BIRC5 baculoviral IAP repeat containing 5 2 6
MIRT510088 PPWD1 peptidylprolyl isomerase domain and WD repeat containing 1 2 8
MIRT512094 CRK CRK proto-oncogene, adaptor protein 2 4
MIRT515381 RPL7 ribosomal protein L7 2 2
MIRT519176 SCO1 SCO1, cytochrome c oxidase assembly protein 2 2
MIRT519964 ZCCHC8 zinc finger CCHC-type containing 8 2 2
MIRT522292 NKAP NFKB activating protein 2 2
MIRT523160 HMGB2 high mobility group box 2 2 4
MIRT525314 FANCA Fanconi anemia complementation group A 2 2
MIRT528194 PLEKHM2 pleckstrin homology and RUN domain containing M2 2 2
MIRT532885 ZNF451 zinc finger protein 451 2 2
MIRT538209 CYR61 cysteine rich angiogenic inducer 61 2 2
MIRT539497 ACTN4 actinin alpha 4 2 2
MIRT554600 RRAGC Ras related GTP binding C 2 2
MIRT562444 DCTN6 dynactin subunit 6 2 2
MIRT562748 AOC3 amine oxidase, copper containing 3 2 2
MIRT565798 SEC14L5 SEC14 like lipid binding 5 2 2
MIRT565838 SCML2 Scm polycomb group protein like 2 2 2
MIRT566072 RCC2 regulator of chromosome condensation 2 2 2
MIRT566104 RBPJ recombination signal binding protein for immunoglobulin kappa J region 2 2
MIRT572407 MRPS14 mitochondrial ribosomal protein S14 2 2
MIRT576198 Vsig2 V-set and immunoglobulin domain containing 2 2 2
MIRT576313 Acbd7 acyl-Coenzyme A binding domain containing 7 2 2
MIRT576651 Mill2 MHC I like leukocyte 2 1 1
MIRT576859 Socs6 suppressor of cytokine signaling 6 2 2
MIRT606819 BICD2 BICD cargo adaptor 2 2 2
MIRT610738 NUDT16 nudix hydrolase 16 2 4
MIRT614798 RORA RAR related orphan receptor A 2 2
MIRT619006 NTMT1 N-terminal Xaa-Pro-Lys N-methyltransferase 1 2 2
MIRT619420 NOS1AP nitric oxide synthase 1 adaptor protein 2 2
MIRT620405 MYO1H myosin IH 2 2
MIRT624869 ABHD13 abhydrolase domain containing 13 2 2
MIRT633527 ZFP30 ZFP30 zinc finger protein 2 2
MIRT633927 DNAH9 dynein axonemal heavy chain 9 2 2
MIRT636611 CLIC5 chloride intracellular channel 5 2 2
MIRT640616 MIOX myo-inositol oxygenase 2 2
MIRT642605 C14orf180 chromosome 14 open reading frame 180 2 2
MIRT644624 SRSF2 serine and arginine rich splicing factor 2 2 2
MIRT655113 PHLDA3 pleckstrin homology like domain family A member 3 2 2
MIRT658976 DNAJB5 DnaJ heat shock protein family (Hsp40) member B5 2 4
MIRT661495 CHMP1B charged multivesicular body protein 1B 2 2
MIRT662996 TMEM59 transmembrane protein 59 2 2
MIRT663075 SFR1 SWI5 dependent homologous recombination repair protein 1 2 2
MIRT665405 WEE1 WEE1 G2 checkpoint kinase 2 2
MIRT666106 SSR1 signal sequence receptor subunit 1 2 2
MIRT669562 ALDOA aldolase, fructose-bisphosphate A 2 2
MIRT670070 ZNF783 zinc finger family member 783 2 2
MIRT671192 ZNF891 zinc finger protein 891 2 2
MIRT675361 KLHL26 kelch like family member 26 2 2
MIRT678857 LINC00598 long intergenic non-protein coding RNA 598 2 2
MIRT679443 C19orf52 translocase of inner mitochondrial membrane 29 2 2
MIRT684163 ALDH1B1 aldehyde dehydrogenase 1 family member B1 2 2
MIRT684543 ZNF460 zinc finger protein 460 2 2
MIRT684674 SLC2A11 solute carrier family 2 member 11 2 2
MIRT684971 MINOS1 mitochondrial inner membrane organizing system 1 2 2
MIRT686006 NEK4 NIMA related kinase 4 2 2
MIRT687758 KIAA1328 KIAA1328 2 2
MIRT688961 ATXN3 ataxin 3 2 2
MIRT689409 UQCR11 ubiquinol-cytochrome c reductase, complex III subunit XI 2 2
MIRT690001 MMP17 matrix metallopeptidase 17 2 2
MIRT690165 ELP3 elongator acetyltransferase complex subunit 3 2 2
MIRT690202 C5orf45 MRN complex interacting protein 2 2
MIRT690477 ZNF33A zinc finger protein 33A 2 2
MIRT690566 MICA MHC class I polypeptide-related sequence A 2 2
MIRT692160 C10orf111 chromosome 10 open reading frame 111 2 2
MIRT693430 PLGLB2 plasminogen-like B2 2 2
MIRT693547 ZNF708 zinc finger protein 708 2 2
MIRT693697 PLGLB1 plasminogen-like B1 2 2
MIRT695006 HSPA6 heat shock protein family A (Hsp70) member 6 2 2
MIRT698525 TFRC transferrin receptor 2 2
MIRT699574 SIKE1 suppressor of IKBKE 1 2 2
MIRT703446 FYTTD1 forty-two-three domain containing 1 2 2
MIRT704397 CTSS cathepsin S 2 2
MIRT704485 CPT1A carnitine palmitoyltransferase 1A 2 2
MIRT709822 STPG1 sperm tail PG-rich repeat containing 1 2 2
MIRT710859 COQ7 coenzyme Q7, hydroxylase 2 2
MIRT711893 INSIG2 insulin induced gene 2 2 2
MIRT713796 CPLX2 complexin 2 2 2
MIRT718800 C1GALT1C1 C1GALT1 specific chaperone 1 2 2
MIRT719501 SEC24B SEC24 homolog B, COPII coat complex component 2 2
MIRT719722 PDE6B phosphodiesterase 6B 2 2
MIRT722204 URM1 ubiquitin related modifier 1 2 2
MIRT723523 CLPTM1L CLPTM1 like 2 2
MIRT725471 GRAP2 GRB2-related adaptor protein 2 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-3622b-3p Platinum 23939 sensitive tissue
hsa-miR-3622b-3p Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-3622b-3p Gemcitabine 60750 NSC613327 approved resistant cell line (PANC-1) (1500 ng/ml)
hsa-miR-3622b-3p Paclitaxel/Docetaxel/Vinorelbine/Doxorubicin/Etoposide resistant cell line (Bads-200)

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