pre-miRNA Information
pre-miRNA hsa-mir-6819   
Genomic Coordinates chr22: 36286847 - 36286907
Description Homo sapiens miR-6819 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-6819-3p
Sequence 41| AAGCCUCUGUCCCCACCCCAG |61
Evidence Experimental
Experiments Meta-analysis
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1279530967 2 dbSNP
rs967579979 3 dbSNP
rs776891214 4 dbSNP
rs771166635 8 dbSNP
rs747037324 9 dbSNP
rs879248090 11 dbSNP
rs1485325191 12 dbSNP
rs778157316 16 dbSNP
Putative Targets

Gene Information
Gene Symbol RBM43   
Synonyms C2orf38
Description RNA binding motif protein 43
Transcript NM_198557   
Expression
Putative miRNA Targets on RBM43
3'UTR of RBM43
(miRNA target sites are highlighted)
>RBM43|NM_198557|3'UTR
   1 TAAAATCTCAGCAATATAGTCATAAGGGCTGCTTTCTCTTGCTGAGCAGTGACCATTGCCATGAATGAGGCTAGCTTTAC
  81 ACACCGTATCTCATGAATCCTTATAGTCATCCTTCTTTGTCAGTGTTGACTATCCTCATGTTACAGCGGAAGAAACTAGG
 161 ATTTGGAGAAGTTAAAACACTTTTCTGAAGTTATCCAGTTGACAAAGAATGAGGCTGTGGCTTAGCCCAGTCTATCTGAT
 241 TACACAGATAATATCTAAGGAATAAAACTTTGAAAAAAACTCACCAAACTTTTTTTTTTTTTTTTTTGAGATGGAGTCTC
 321 GCTCTGTTGTCCAGGCTGGAGTGCAGTGGCGTGATCTCGGCTCACTGCAACGTCCACCTCCTGGGTTCACACCATTCTCC
 401 TGCCTCAACCTCTGGAGTAGCTGGGACTACAGGTGCCCACCACCACGCCCGGCTAATCTTTTTGTATTTTTTTAGTAGAG
 481 ATGGGGTTTCACCGTGTTAGTCAGGATGGTCTCCATCTCCTGACCTTGTGATCCACCCGCCTCGGCCTCCCAAAGTGCTG
 561 GGATTACAGGCGTGAGCCACTGCGCCCAGCAAACTCACCAAACTTTGAAGGAATCTTACTTTCTCTGTAACTCCAAATTA
 641 TTAGAGAATAATAATTATTAAGAAGTAGCCTTAACATATGAGAAATTTGAAAGGTGATTATTATGCCATGGGCAATTTCT
 721 TAACATTTACAGTTTGTGTTTACTCCGTGTAGAATTAGAATACTGGCAAAAATCACTGGGGAAACTACTTAGATGGAAAG
 801 CATATCTTATGCAGGTAATCATTATTTGACTAAATTCTATTGTTTCAAGGCTGCTGGCCACATAGGATGTTTTTACTATT
 881 TTTTTAGCCTAAGTGCTTACATAAAATGGTGATTCTTTTATAATTGTGCAAGTTGATAATATTAATTGAGTCATTCTTGT
 961 CACATCCAACTAAAACAGACTCAAGAAGCTAGGGGGAAAAAGTACTTGGGACACATAATATTGCTCCAAGAATGTAATTC
1041 TCTGTGAGCCTGGCTACTGAAACTGCTTGCTGTAACCTGAGACCAGTTTTGTCTATAGCTGCTGAGATAACTTGCTGTAA
1121 CTCTAGGACTAATTTTACCTATGGCCATTGCCCACCAGTTGGAGCTTGCCAGCTCCCCAGGGCTTTACTAATACCAATGA
1201 ACTTTCTCTTAAGATCACAAGTTGGCCGGGCGTGGTGACTCATACCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGT
1281 GGATCACAAGGTCAGGAGATTGAGACCATCCTGGCTAACATGGTAAAACCCCATCTCTACTAAAAATACAAAAATTAGCC
1361 GGGCATGGTGGTGGGCGCCTGTAGTCCCACCTACTCGGGAGGCTAGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAG
1441 GTGGAGCTTGCAGTGAGCCAAGACTGCACTACTGCACTCCAGCCTGGGTGACAGAGCGAGACTCCGTCTCAAAAAAAAAA
1521 AAAAAAAAAAAAGAAAGACCACAAGTAACATTCTTAGTTTTAAATAAAACCCTCAACCTTCTCTTTGTTTGTTGGACATA
1601 CTAAAGATCACCTAGAATTGAAATTCTTTCTTCTCAAAACATTAAATTTAGTTTTGTGTCTACATTTTCATTTTGACTTT
1681 GACATGCATGGTGTCAGAAGTGGGATACAAAGCTGACTCACCTCATGGAGAATCATTGGCCTTTGGAGTTATGGCATGAG
1761 GTACCCATGTTGGGGCCCTTTGAACCCCCTACACCCCCACCACTTTCACAGGTAATCCTTTCTCCCTCCAGTAAGTATCT
1841 CTTGGACAGAACTCTCAGATATGGTTCGAGTTCTGTTTTATTTGGGATATGATTAGGGAGAGGTCTTTCCCCCTCTTGTT
1921 TGGTAGATCTGTTGGGTAGAATTATTTTCCCCCTGTTGACCTCAGCTGCGAGGTTTGGACCTTGAGGCTTGGATGAGGGA
2001 ATTTTTCCCTTTCTTTGGAGAAGGCTTATCATTCTTACTGGTAAGCATGTATTTTATTTTCTGTCCTGTCTTGTATTTAT
2081 TTGGCCTTTGTGTATTCAGTGCTTGCATTTACTTGGCTTTTGCATAGTTGACATTAAATCAGAGCACCCACGAAATGAGC
2161 TCTCAAAGTTCAAAGGCATGCCAGAATATTTTCTGGAACTCCAGCTAGTAACATATTCAAACATTACAGGGATCATTTAG
2241 TCTGTTTTTCTTAAAACTGAACTAAAAGATGGAGGCTATAAAATCATACACTCCAAATAAGATATGCATATTTCATTGAT
2321 ATCTTGAGGCTAAAAAAAAATAAAAACAAAAACAAAACACATTCAGGATACAAATATTGCCTTGTTAAAAAATACTGTCT
2401 CAAAGGTGGCTGAAACTTTCTTTTCTAGACCTTTCCCCTCCCCTTCTTACAGTATCCCCTCTTTATCCTTCTCTAAACAG
2481 CTATTCTAACATACTACTTAAATAAAAACACTTGAAAACCAGCAGATATAAAACAAAGTCATTTTGACCTTCCTACTGTT
2561 TTTTTTTTAAAGCAAAGATTAAATTCCCATGTAAAACCTTCCTCCCTATACAAAAAAGAATAGCAGCATTTTTATCTTCA
2641 ATGACAAAGAATTGAGTCCAAGAAAATACTGTATAAACCTTGTTAAAAATCA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' gacccCACCCCUGUCUCCGAa 5'
               | | || :||||||| 
Target 5' tactcGGGAGGCTAGAGGCTg 3'
1392 - 1412 152.00 -19.40
2
miRNA  3' gaccccacccCUGUCUCCGAa 5'
                    ||::|||||| 
Target 5' tgaactaaaaGATGGAGGCTa 3'
2258 - 2278 135.00 -12.20
3
miRNA  3' gaCCCCACCCCUG--UCUCCGAa 5'
            | |||  ||||   |||||| 
Target 5' gcGAGGTTTGGACCTTGAGGCTt 3'
1968 - 1990 129.00 -19.50
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN30130491 2 COSMIC
COSN26991800 3 COSMIC
COSN2529031 7 COSMIC
COSN30493457 21 COSMIC
COSN30154069 25 COSMIC
COSN30452293 26 COSMIC
COSN30183197 27 COSMIC
COSN30504981 58 COSMIC
COSN2525842 104 COSMIC
COSN30495843 126 COSMIC
COSN31605590 152 COSMIC
COSN32063987 283 COSMIC
COSN21071364 394 COSMIC
COSN24225296 668 COSMIC
COSN20097243 676 COSMIC
COSN28442762 747 COSMIC
COSN9863077 857 COSMIC
COSN9863076 948 COSMIC
COSN6197274 1033 COSMIC
COSN9068988 1203 COSMIC
COSN15115631 2486 COSMIC
COSN29330693 2558 COSMIC
COSN22284595 2601 COSMIC
COSN17389741 2837 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs751020548 1 dbSNP
rs376248041 3 dbSNP
rs776013282 5 dbSNP
rs898232546 6 dbSNP
rs750020375 9 dbSNP
rs373224811 10 dbSNP
rs761560990 16 dbSNP
rs753856402 19 dbSNP
rs763919377 22 dbSNP
rs1388380070 26 dbSNP
rs1030725415 27 dbSNP
rs759726104 38 dbSNP
rs772598584 41 dbSNP
rs774295713 44 dbSNP
rs531440768 49 dbSNP
rs1413572868 51 dbSNP
rs1390814594 53 dbSNP
rs746284722 58 dbSNP
rs1407705546 61 dbSNP
rs1339803933 65 dbSNP
rs1330656698 70 dbSNP
rs1274224868 82 dbSNP
rs562404739 85 dbSNP
rs939787288 86 dbSNP
rs551771964 88 dbSNP
rs903666140 94 dbSNP
rs1279937287 99 dbSNP
rs1022241002 103 dbSNP
rs1007210817 104 dbSNP
rs889161212 111 dbSNP
rs912196255 121 dbSNP
rs1050395397 127 dbSNP
rs1325817752 130 dbSNP
rs185766963 133 dbSNP
rs986496387 135 dbSNP
rs932553426 137 dbSNP
rs560044050 147 dbSNP
rs570022955 148 dbSNP
rs1352935744 152 dbSNP
rs139713530 153 dbSNP
rs1410922398 177 dbSNP
rs561131562 200 dbSNP
rs289884 206 dbSNP
rs1169344773 217 dbSNP
rs1481673244 219 dbSNP
rs1430794103 220 dbSNP
rs1199457640 221 dbSNP
rs956132530 228 dbSNP
rs985100765 234 dbSNP
rs948306454 235 dbSNP
rs1329250867 238 dbSNP
rs1330343146 239 dbSNP
rs1035649230 241 dbSNP
rs1002870292 243 dbSNP
rs1347466577 258 dbSNP
rs576487345 264 dbSNP
rs1026591080 271 dbSNP
rs1023669011 273 dbSNP
rs1183497255 280 dbSNP
rs1198114865 280 dbSNP
rs993364352 283 dbSNP
rs1277635571 288 dbSNP
rs1169517254 289 dbSNP
rs1325511659 295 dbSNP
rs1263861373 306 dbSNP
rs1218918197 308 dbSNP
rs138569453 308 dbSNP
rs201258374 308 dbSNP
rs34911765 308 dbSNP
rs557619308 308 dbSNP
rs1476334062 312 dbSNP
rs867731544 320 dbSNP
rs960336534 321 dbSNP
rs529056273 324 dbSNP
rs923708730 329 dbSNP
rs977823017 337 dbSNP
rs967940951 341 dbSNP
rs1367623334 342 dbSNP
rs1022545666 350 dbSNP
rs1006691793 351 dbSNP
rs954113167 353 dbSNP
rs1230238406 355 dbSNP
rs1271349986 356 dbSNP
rs1443188032 357 dbSNP
rs6753956 358 dbSNP
rs539872812 359 dbSNP
rs1294428533 363 dbSNP
rs1471261594 366 dbSNP
rs750180121 367 dbSNP
rs561853132 371 dbSNP
rs1260379901 372 dbSNP
rs939742456 377 dbSNP
rs1399655898 379 dbSNP
rs1405158541 383 dbSNP
rs1193808531 392 dbSNP
rs890918328 393 dbSNP
rs1471779141 394 dbSNP
rs1165189182 397 dbSNP
rs1178631213 398 dbSNP
rs577297988 403 dbSNP
rs1050731888 404 dbSNP
rs767465924 409 dbSNP
rs932332903 412 dbSNP
rs1382871260 416 dbSNP
rs1383926193 419 dbSNP
rs1470272070 423 dbSNP
rs554548662 426 dbSNP
rs1181478336 430 dbSNP
rs1462471651 438 dbSNP
rs979736094 439 dbSNP
rs1214983304 446 dbSNP
rs1360678597 447 dbSNP
rs1238959149 448 dbSNP
rs536436858 450 dbSNP
rs1036441583 451 dbSNP
rs1005376073 456 dbSNP
rs568615051 459 dbSNP
rs1286361704 465 dbSNP
rs887830024 493 dbSNP
rs1049700695 494 dbSNP
rs548774985 496 dbSNP
rs546866424 500 dbSNP
rs1454960916 505 dbSNP
rs568956069 508 dbSNP
rs939027253 509 dbSNP
rs970005137 511 dbSNP
rs1455558435 513 dbSNP
rs1159178083 520 dbSNP
rs923594027 533 dbSNP
rs896366109 535 dbSNP
rs1320551158 536 dbSNP
rs142462829 538 dbSNP
rs1339340183 539 dbSNP
rs532014590 543 dbSNP
rs963025325 545 dbSNP
rs1305328610 546 dbSNP
rs1337114564 547 dbSNP
rs1016172555 561 dbSNP
rs968204486 563 dbSNP
rs914969668 571 dbSNP
rs1205474278 572 dbSNP
rs1384280450 577 dbSNP
rs1235395534 581 dbSNP
rs766373054 583 dbSNP
rs148795069 584 dbSNP
rs1421071696 585 dbSNP
rs564442182 586 dbSNP
rs1385624120 588 dbSNP
rs1050802870 599 dbSNP
rs1185872514 604 dbSNP
rs1428669480 614 dbSNP
rs1029565787 627 dbSNP
rs1484815141 632 dbSNP
rs1407408954 636 dbSNP
rs998052647 651 dbSNP
rs546535541 656 dbSNP
rs1465584789 665 dbSNP
rs530002975 669 dbSNP
rs34519090 680 dbSNP
rs397804474 680 dbSNP
rs111527327 713 dbSNP
rs966057933 715 dbSNP
rs899458022 723 dbSNP
rs1300241545 729 dbSNP
rs1343255968 730 dbSNP
rs1216529601 731 dbSNP
rs1043408828 736 dbSNP
rs1283390026 738 dbSNP
rs946618698 740 dbSNP
rs1202401824 744 dbSNP
rs758374406 746 dbSNP
rs1004849702 747 dbSNP
rs289883 767 dbSNP
rs1049118593 776 dbSNP
rs1268367251 778 dbSNP
rs1360689537 792 dbSNP
rs1295226867 810 dbSNP
rs1012851254 815 dbSNP
rs895302756 818 dbSNP
rs765428273 825 dbSNP
rs1052203376 832 dbSNP
rs761924194 836 dbSNP
rs939580039 839 dbSNP
rs544407845 841 dbSNP
rs536920387 858 dbSNP
rs530588332 863 dbSNP
rs1462752466 867 dbSNP
rs1290136872 868 dbSNP
rs946380717 869 dbSNP
rs1430879879 874 dbSNP
rs1293318462 875 dbSNP
rs571224347 876 dbSNP
rs1406421764 877 dbSNP
rs776885881 884 dbSNP
rs1303195768 886 dbSNP
rs1364406415 886 dbSNP
rs563190648 901 dbSNP
rs1300975492 902 dbSNP
rs1308010836 908 dbSNP
rs985214165 909 dbSNP
rs970121731 911 dbSNP
rs546313181 914 dbSNP
rs1289352403 923 dbSNP
rs1489910210 926 dbSNP
rs1225059505 948 dbSNP
rs1269673657 950 dbSNP
rs932522224 968 dbSNP
rs1169435482 969 dbSNP
rs922440137 982 dbSNP
rs1426686420 990 dbSNP
rs1429650227 996 dbSNP
rs577361247 997 dbSNP
rs963269570 997 dbSNP
rs554213773 998 dbSNP
rs1004481276 1002 dbSNP
rs1426139875 1002 dbSNP
rs1344087555 1005 dbSNP
rs955500573 1009 dbSNP
rs1015434638 1021 dbSNP
rs541533966 1026 dbSNP
rs1362513985 1034 dbSNP
rs996564369 1048 dbSNP
rs899616023 1050 dbSNP
rs1480188720 1055 dbSNP
rs143909351 1062 dbSNP
rs1028181765 1074 dbSNP
rs1225017784 1076 dbSNP
rs1010596586 1081 dbSNP
rs1490554800 1082 dbSNP
rs1486460387 1090 dbSNP
rs1251134534 1100 dbSNP
rs554937151 1101 dbSNP
rs1241668613 1104 dbSNP
rs1446892120 1108 dbSNP
rs1012324936 1111 dbSNP
rs1052278335 1116 dbSNP
rs538461991 1118 dbSNP
rs569334881 1123 dbSNP
rs1035188449 1125 dbSNP
rs1003678065 1129 dbSNP
rs902786347 1139 dbSNP
rs1334538223 1141 dbSNP
rs571219639 1143 dbSNP
rs1453184180 1151 dbSNP
rs1297007071 1154 dbSNP
rs1304830851 1156 dbSNP
rs1042628139 1162 dbSNP
rs1372926844 1171 dbSNP
rs946404306 1179 dbSNP
rs762098911 1183 dbSNP
rs1344340546 1184 dbSNP
rs551042930 1187 dbSNP
rs1261886798 1188 dbSNP
rs1463038598 1193 dbSNP
rs1406424660 1197 dbSNP
rs112474004 1199 dbSNP
rs1232633023 1202 dbSNP
rs974466276 1215 dbSNP
rs1297231653 1217 dbSNP
rs530983245 1227 dbSNP
rs932407464 1228 dbSNP
rs566181700 1231 dbSNP
rs908562146 1232 dbSNP
rs1470229460 1240 dbSNP
rs546195105 1246 dbSNP
rs34087867 1264 dbSNP
rs1469176478 1269 dbSNP
rs776730936 1271 dbSNP
rs529621902 1272 dbSNP
rs1440311025 1273 dbSNP
rs574234546 1276 dbSNP
rs939832197 1277 dbSNP
rs1223044456 1282 dbSNP
rs1281428753 1289 dbSNP
rs149452359 1291 dbSNP
rs760984698 1301 dbSNP
rs952176292 1320 dbSNP
rs372220589 1332 dbSNP
rs1272767276 1337 dbSNP
rs1436371674 1338 dbSNP
rs201245103 1355 dbSNP
rs370042063 1355 dbSNP
rs1479895625 1359 dbSNP
rs61603732 1360 dbSNP
rs772508714 1361 dbSNP
rs1480737140 1368 dbSNP
rs1167198886 1369 dbSNP
rs369340475 1376 dbSNP
rs553129190 1377 dbSNP
rs1003736912 1390 dbSNP
rs1252196208 1395 dbSNP
rs902671590 1396 dbSNP
rs1021660729 1397 dbSNP
rs1404534784 1402 dbSNP
rs964117876 1403 dbSNP
rs1347417031 1404 dbSNP
rs374889461 1412 dbSNP
rs7589060 1413 dbSNP
rs1049415599 1415 dbSNP
rs1338010659 1426 dbSNP
rs1224873156 1427 dbSNP
rs545179752 1428 dbSNP
rs1490094553 1435 dbSNP
rs577087057 1436 dbSNP
rs1270432132 1445 dbSNP
rs892109837 1447 dbSNP
rs560536850 1464 dbSNP
rs1371324152 1466 dbSNP
rs1476339397 1467 dbSNP
rs932293089 1468 dbSNP
rs1384336267 1469 dbSNP
rs1375268415 1472 dbSNP
rs147383357 1473 dbSNP
rs773659651 1475 dbSNP
rs1367532942 1478 dbSNP
rs1387488210 1481 dbSNP
rs1451865464 1482 dbSNP
rs574720342 1497 dbSNP
rs1325245298 1498 dbSNP
rs1178470851 1505 dbSNP
rs1470383550 1506 dbSNP
rs1363291246 1509 dbSNP
rs1157215287 1510 dbSNP
rs1421036449 1511 dbSNP
rs1293577478 1512 dbSNP
rs1251734886 1513 dbSNP
rs1183322657 1514 dbSNP
rs1259018340 1520 dbSNP
rs1040749610 1523 dbSNP
rs1460244864 1526 dbSNP
rs939884509 1527 dbSNP
rs1242314691 1529 dbSNP
rs1245556148 1532 dbSNP
rs10596453 1533 dbSNP
rs1158105397 1533 dbSNP
rs1185191867 1533 dbSNP
rs1213954082 1533 dbSNP
rs1237829546 1533 dbSNP
rs1382693398 1533 dbSNP
rs1387374636 1533 dbSNP
rs141710229 1533 dbSNP
rs1442475342 1533 dbSNP
rs1450992277 1533 dbSNP
rs1458581001 1533 dbSNP
rs200044902 1533 dbSNP
rs565744614 1533 dbSNP
rs745726207 1533 dbSNP
rs751044881 1533 dbSNP
rs776044657 1533 dbSNP
rs869136928 1533 dbSNP
rs1204857868 1534 dbSNP
rs1345179296 1535 dbSNP
rs1205379990 1537 dbSNP
rs1262503280 1537 dbSNP
rs1459911927 1537 dbSNP
rs148288615 1538 dbSNP
rs1256552843 1539 dbSNP
rs1259567686 1540 dbSNP
rs1424642832 1540 dbSNP
rs1236431758 1543 dbSNP
rs1318307215 1556 dbSNP
rs908361384 1557 dbSNP
rs906497472 1562 dbSNP
rs1468671291 1570 dbSNP
rs1048829695 1577 dbSNP
rs772540441 1583 dbSNP
rs1403295430 1591 dbSNP
rs947940924 1599 dbSNP
rs1338686669 1605 dbSNP
rs1304329338 1609 dbSNP
rs1396478313 1614 dbSNP
rs915779414 1623 dbSNP
rs899005516 1626 dbSNP
rs555277030 1632 dbSNP
rs559224090 1641 dbSNP
rs941444335 1643 dbSNP
rs1455563443 1644 dbSNP
rs747724873 1652 dbSNP
rs990832304 1660 dbSNP
rs289882 1661 dbSNP
rs1163141210 1686 dbSNP
rs934230312 1688 dbSNP
rs1248757694 1690 dbSNP
rs928062783 1699 dbSNP
rs982186087 1705 dbSNP
rs1387454587 1712 dbSNP
rs1183035852 1717 dbSNP
rs967322500 1719 dbSNP
rs1021127051 1720 dbSNP
rs1011460372 1721 dbSNP
rs1179137964 1723 dbSNP
rs1022906622 1724 dbSNP
rs989208983 1736 dbSNP
rs956693490 1740 dbSNP
rs1398239234 1754 dbSNP
rs958329768 1761 dbSNP
rs1028967523 1764 dbSNP
rs1202803084 1768 dbSNP
rs1030618898 1769 dbSNP
rs1286333280 1773 dbSNP
rs1003185239 1777 dbSNP
rs906445167 1784 dbSNP
rs1023478679 1787 dbSNP
rs996490325 1789 dbSNP
rs1252822189 1794 dbSNP
rs1344621303 1798 dbSNP
rs1206076574 1799 dbSNP
rs1268287876 1804 dbSNP
rs898959765 1816 dbSNP
rs900832741 1825 dbSNP
rs754700765 1827 dbSNP
rs575841279 1844 dbSNP
rs1040805471 1847 dbSNP
rs1244773905 1848 dbSNP
rs558728111 1855 dbSNP
rs1003914441 1856 dbSNP
rs1168822950 1862 dbSNP
rs182427051 1863 dbSNP
rs1037947048 1864 dbSNP
rs372714806 1867 dbSNP
rs746746604 1868 dbSNP
rs1363329895 1885 dbSNP
rs1047077492 1887 dbSNP
rs1293584181 1890 dbSNP
rs570167248 1894 dbSNP
rs934010737 1898 dbSNP
rs1380417914 1905 dbSNP
rs1437848639 1912 dbSNP
rs1048232287 1913 dbSNP
rs1342535597 1917 dbSNP
rs1229416342 1922 dbSNP
rs922612427 1922 dbSNP
rs1452494427 1934 dbSNP
rs1039935311 1936 dbSNP
rs1223926603 1939 dbSNP
rs931110690 1946 dbSNP
rs1316810117 1948 dbSNP
rs140711340 1954 dbSNP
rs111407844 1969 dbSNP
rs552620407 1970 dbSNP
rs1450556953 1973 dbSNP
rs1183356726 1982 dbSNP
rs190277488 1992 dbSNP
rs1293329728 1993 dbSNP
rs938029275 1995 dbSNP
rs1344044732 1999 dbSNP
rs780002568 2001 dbSNP
rs375539440 2005 dbSNP
rs982071544 2020 dbSNP
rs1365831167 2022 dbSNP
rs1451720679 2032 dbSNP
rs966828363 2037 dbSNP
rs913949263 2038 dbSNP
rs7582934 2039 dbSNP
rs1367850284 2047 dbSNP
rs1230195979 2048 dbSNP
rs1313555146 2049 dbSNP
rs958426635 2057 dbSNP
rs970342695 2063 dbSNP
rs1213734886 2065 dbSNP
rs1164154391 2068 dbSNP
rs1465729505 2090 dbSNP
rs1203478046 2092 dbSNP
rs1023724569 2095 dbSNP
rs1012131830 2098 dbSNP
rs963659352 2102 dbSNP
rs1028558940 2110 dbSNP
rs758267927 2112 dbSNP
rs997046271 2115 dbSNP
rs1416859031 2116 dbSNP
rs965052287 2118 dbSNP
rs1475387091 2128 dbSNP
rs779552768 2132 dbSNP
rs1389349538 2133 dbSNP
rs1016096378 2136 dbSNP
rs1019241523 2142 dbSNP
rs750436642 2151 dbSNP
rs138828797 2152 dbSNP
rs150129202 2156 dbSNP
rs1005148560 2164 dbSNP
rs887178049 2176 dbSNP
rs1047151970 2186 dbSNP
rs886874996 2190 dbSNP
rs1048595076 2198 dbSNP
rs1222190505 2214 dbSNP
rs998291195 2216 dbSNP
rs995381029 2220 dbSNP
rs901137141 2222 dbSNP
rs1221287442 2227 dbSNP
rs571528938 2228 dbSNP
rs915501023 2232 dbSNP
rs1053943860 2236 dbSNP
rs1293700723 2240 dbSNP
rs1210267322 2249 dbSNP
rs754464830 2260 dbSNP
rs1338474708 2262 dbSNP
rs935471081 2263 dbSNP
rs1427179508 2280 dbSNP
rs1414887415 2291 dbSNP
rs1055761460 2294 dbSNP
rs938583583 2295 dbSNP
rs1268417125 2300 dbSNP
rs1354211051 2302 dbSNP
rs981786467 2303 dbSNP
rs1309960919 2309 dbSNP
rs970458837 2312 dbSNP
rs1341222847 2314 dbSNP
rs907086528 2315 dbSNP
rs1282645399 2316 dbSNP
rs1273650795 2319 dbSNP
rs1046449750 2321 dbSNP
rs551618347 2324 dbSNP
rs34132424 2329 dbSNP
rs560598429 2332 dbSNP
rs989956178 2337 dbSNP
rs1206791860 2341 dbSNP
rs201563065 2341 dbSNP
rs936886298 2341 dbSNP
rs1016625289 2342 dbSNP
rs1490023650 2342 dbSNP
rs111946238 2348 dbSNP
rs1478299560 2354 dbSNP
rs1167141733 2357 dbSNP
rs1394775054 2358 dbSNP
rs779604841 2367 dbSNP
rs1428081973 2373 dbSNP
rs1170646727 2383 dbSNP
rs1371393847 2391 dbSNP
rs1466539714 2396 dbSNP
rs1321645125 2397 dbSNP
rs1333372398 2406 dbSNP
rs1423759437 2411 dbSNP
rs1030175612 2412 dbSNP
rs1269998027 2420 dbSNP
rs965606993 2426 dbSNP
rs753948150 2434 dbSNP
rs1363393922 2435 dbSNP
rs530148477 2440 dbSNP
rs1198007065 2441 dbSNP
rs1230163224 2447 dbSNP
rs998239130 2450 dbSNP
rs1358261234 2451 dbSNP
rs755744937 2452 dbSNP
rs1291357317 2454 dbSNP
rs1019796029 2465 dbSNP
rs1192309262 2471 dbSNP
rs1240149569 2480 dbSNP
rs1451173952 2491 dbSNP
rs1188952978 2493 dbSNP
rs1214560695 2500 dbSNP
rs982487059 2516 dbSNP
rs1391070622 2519 dbSNP
rs901294316 2520 dbSNP
rs750057203 2523 dbSNP
rs1007330156 2533 dbSNP
rs951106576 2538 dbSNP
rs561122185 2549 dbSNP
rs893819487 2556 dbSNP
rs1318166721 2559 dbSNP
rs1387082840 2567 dbSNP
rs1242102279 2569 dbSNP
rs548330745 2569 dbSNP
rs935587202 2569 dbSNP
rs544548028 2572 dbSNP
rs894192085 2589 dbSNP
rs575539749 2591 dbSNP
rs1356357645 2596 dbSNP
rs1204033276 2611 dbSNP
rs1046583006 2618 dbSNP
rs1034194174 2624 dbSNP
rs565201235 2626 dbSNP
rs916340400 2631 dbSNP
rs1444256909 2644 dbSNP
rs879213667 2648 dbSNP
rs990488041 2649 dbSNP
rs1437077937 2654 dbSNP
rs1270548600 2655 dbSNP
rs1473203348 2659 dbSNP
rs907140259 2670 dbSNP
rs192033601 2693 dbSNP
rs1459252881 2705 dbSNP
rs1321675238 2709 dbSNP
rs945423928 2723 dbSNP
rs1197485923 2726 dbSNP
rs1318455763 2736 dbSNP
rs1405736616 2739 dbSNP
rs941663736 2742 dbSNP
rs1335856257 2744 dbSNP
rs573076956 2745 dbSNP
rs892451496 2752 dbSNP
rs908898091 2752 dbSNP
rs1285873369 2778 dbSNP
rs553075539 2779 dbSNP
rs764249354 2780 dbSNP
rs1325717448 2782 dbSNP
rs535963868 2786 dbSNP
rs1262289945 2794 dbSNP
rs1482113012 2797 dbSNP
rs760898922 2808 dbSNP
rs921312808 2812 dbSNP
rs975564539 2815 dbSNP
rs1334360060 2816 dbSNP
rs1181593622 2822 dbSNP
rs1409793204 2823 dbSNP
rs1473865938 2828 dbSNP
rs975934843 2831 dbSNP
rs1160471084 2851 dbSNP
rs1331247505 2863 dbSNP
rs1464911179 2866 dbSNP
rs573637337 2880 dbSNP
rs912838327 2885 dbSNP
rs983432163 2894 dbSNP
rs536738870 2905 dbSNP
rs1174868724 2913 dbSNP
rs1027070982 2914 dbSNP
rs1426650944 2917 dbSNP
rs1410360713 2925 dbSNP
rs1172816381 2927 dbSNP
rs1310352390 2928 dbSNP
rs537016938 2934 dbSNP
rs1032311679 2947 dbSNP
rs571587342 2962 dbSNP
rs551681139 2967 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HEK293S
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in GSM1084040. RNA binding protein: AGO2. Condition:CLIP_noarsenite_rep1 HITS-CLIP data was present in GSM1084044. RNA binding protein: AGO2. Condition:CLIP_noarsenite_rep3 HITS-CLIP data was present in GSM1084068. RNA binding protein: AGO2. Condition:CLIP_noemetine_SigmaAb HITS-CLIP data was present in GSM1084072. RNA binding protein: AGO2. Condition:CLIP_nohippuristanol_rep1_AbnovaAb ...

- Karginov FV; Hannon GJ, 2013, Genes & development.

Article - Karginov FV; Hannon GJ
- Genes & development, 2013
When adapting to environmental stress, cells attenuate and reprogram their translational output. In part, these altered translation profiles are established through changes in the interactions between RNA-binding proteins and mRNAs. The Argonaute 2 (Ago2)/microRNA (miRNA) machinery has been shown to participate in stress-induced translational up-regulation of a particular mRNA, CAT-1; however, a detailed, transcriptome-wide understanding of the involvement of Ago2 in the process has been lacking. Here, we profiled the overall changes in Ago2-mRNA interactions upon arsenite stress by cross-linking immunoprecipitation (CLIP) followed by high-throughput sequencing (CLIP-seq). Ago2 displayed a significant remodeling of its transcript occupancy, with the majority of 3' untranslated region (UTR) and coding sequence (CDS) sites exhibiting stronger interaction. Interestingly, target sites that were destined for release from Ago2 upon stress were depleted in miRNA complementarity signatures, suggesting an alternative mode of interaction. To compare the changes in Ago2-binding patterns across transcripts with changes in their translational states, we measured mRNA profiles on ribosome/polysome gradients by RNA sequencing (RNA-seq). Increased Ago2 occupancy correlated with stronger repression of translation for those mRNAs, as evidenced by a shift toward lighter gradient fractions upon stress, while release of Ago2 was associated with the limited number of transcripts that remained translated. Taken together, these data point to a role for Ago2 and the mammalian miRNAs in mediating the translational component of the stress response.
LinkOut: [PMID: 23824327]
CLIP-seq Support 1 for dataset GSM1084040
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_noarsenite_rep1
Location of target site ENST00000331426.5 | 3UTR | AGAGGCUGAGGCAGG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM1084044
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_noarsenite_rep3
Location of target site ENST00000331426.5 | 3UTR | UAGAGGCUGAGGCAGGAGAAUGGCGUGAAC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
CLIP-seq Support 3 for dataset GSM1084068
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_noemetine_SigmaAb
Location of target site ENST00000331426.5 | 3UTR | UAGAGGCUGAGGCAGGAGAAUGGC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
CLIP-seq Support 4 for dataset GSM1084072
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_nohippuristanol_rep1_AbnovaAb
Location of target site ENST00000331426.5 | 3UTR | UCGGGAGGCUAGAGGCU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
108 hsa-miR-6819-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT358318 PANK3 pantothenate kinase 3 2 2
MIRT454719 UBQLNL ubiquilin like 2 2
MIRT471362 PEG10 paternally expressed 10 2 2
MIRT478101 DLG5 discs large MAGUK scaffold protein 5 2 4
MIRT495554 GOLGA6L4 golgin A6 family-like 4 2 2
MIRT495587 GOLGA6L10 golgin A6 family-like 10 2 2
MIRT508315 RPL18 ribosomal protein L18 2 4
MIRT529183 ADAM33 ADAM metallopeptidase domain 33 2 2
MIRT532035 FHDC1 FH2 domain containing 1 2 2
MIRT545131 ANXA5 annexin A5 2 2
MIRT567288 HNRNPL heterogeneous nuclear ribonucleoprotein L 2 2
MIRT568094 CEBPG CCAAT/enhancer binding protein gamma 2 2
MIRT573291 DLX4 distal-less homeobox 4 2 2
MIRT575169 Fam120c family with sequence similarity 120, member C 2 2
MIRT609495 DNASE1L3 deoxyribonuclease 1 like 3 2 2
MIRT611264 EHD3 EH domain containing 3 2 2
MIRT613580 POC5 POC5 centriolar protein 2 2
MIRT616520 C9orf170 chromosome 9 open reading frame 170 2 2
MIRT617098 ZNF667 zinc finger protein 667 2 2
MIRT618268 DDX51 DEAD-box helicase 51 2 2
MIRT618294 ZNF682 zinc finger protein 682 2 2
MIRT618617 SHOX short stature homeobox 2 2
MIRT619741 SRFBP1 serum response factor binding protein 1 2 2
MIRT619784 NRIP2 nuclear receptor interacting protein 2 2 2
MIRT621119 SP110 SP110 nuclear body protein 2 2
MIRT622530 RAD51 RAD51 recombinase 2 2
MIRT623088 NME6 NME/NM23 nucleoside diphosphate kinase 6 2 2
MIRT623938 FKBP14 FK506 binding protein 14 2 2
MIRT624389 CD84 CD84 molecule 2 2
MIRT624860 ABI2 abl interactor 2 2 2
MIRT628752 TRPV2 transient receptor potential cation channel subfamily V member 2 2 2
MIRT632243 VTA1 vesicle trafficking 1 2 2
MIRT632987 E2F2 E2F transcription factor 2 2 2
MIRT633695 RBM43 RNA binding motif protein 43 2 2
MIRT633766 CENPBD1 CENPB DNA-binding domain containing 1 2 2
MIRT633808 ZNF91 zinc finger protein 91 2 2
MIRT638914 CBLN2 cerebellin 2 precursor 2 2
MIRT641298 SLAMF1 signaling lymphocytic activation molecule family member 1 2 2
MIRT642123 SRCAP Snf2 related CREBBP activator protein 2 2
MIRT642179 HEBP2 heme binding protein 2 2 2
MIRT642617 CDKN3 cyclin dependent kinase inhibitor 3 2 2
MIRT643325 TMEM151B transmembrane protein 151B 2 2
MIRT644534 TMEM134 transmembrane protein 134 2 2
MIRT645820 OMA1 OMA1 zinc metallopeptidase 2 2
MIRT646093 MGST3 microsomal glutathione S-transferase 3 2 2
MIRT646861 SLC35E4 solute carrier family 35 member E4 2 2
MIRT647466 DZIP1L DAZ interacting zinc finger protein 1 like 2 2
MIRT647702 NADSYN1 NAD synthetase 1 2 2
MIRT648082 ZMIZ2 zinc finger MIZ-type containing 2 2 2
MIRT648547 TMEM169 transmembrane protein 169 2 2
MIRT648690 AP1M1 adaptor related protein complex 1 mu 1 subunit 2 2
MIRT649747 GNB5 G protein subunit beta 5 2 2
MIRT650154 ZNF426 zinc finger protein 426 2 2
MIRT650450 CPXM2 carboxypeptidase X, M14 family member 2 2 2
MIRT650943 CTNS cystinosin, lysosomal cystine transporter 2 2
MIRT651544 WNK1 WNK lysine deficient protein kinase 1 2 2
MIRT652304 TNRC6B trinucleotide repeat containing 6B 2 2
MIRT652890 SYVN1 synoviolin 1 2 2
MIRT654222 RNF19B ring finger protein 19B 2 2
MIRT654676 PSMB5 proteasome subunit beta 5 2 2
MIRT658249 FAXC failed axon connections homolog 2 2
MIRT658363 FAM65B RHO family interacting cell polarization regulator 2 2 2
MIRT659622 CELF1 CUGBP Elav-like family member 1 2 2
MIRT660171 BNIP3L BCL2 interacting protein 3 like 2 2
MIRT660634 ANKRD52 ankyrin repeat domain 52 2 2
MIRT662428 TMCO1 transmembrane and coiled-coil domains 1 2 2
MIRT662984 PAK3 p21 (RAC1) activated kinase 3 2 2
MIRT663939 ZNF554 zinc finger protein 554 2 2
MIRT666960 PKHD1 PKHD1, fibrocystin/polyductin 2 2
MIRT667945 HNRNPC heterogeneous nuclear ribonucleoprotein C (C1/C2) 2 2
MIRT668847 CYCS cytochrome c, somatic 2 2
MIRT671792 RGS17 regulator of G protein signaling 17 2 2
MIRT672382 RPL37 ribosomal protein L37 2 2
MIRT673516 TNFAIP8L1 TNF alpha induced protein 8 like 1 2 4
MIRT674716 FAM73A mitoguardin 1 2 2
MIRT676352 KLF8 Kruppel like factor 8 2 2
MIRT677820 MRPS10 mitochondrial ribosomal protein S10 2 2
MIRT678440 PDE4C phosphodiesterase 4C 2 2
MIRT678499 ARHGEF39 Rho guanine nucleotide exchange factor 39 2 2
MIRT679243 LRP10 LDL receptor related protein 10 2 2
MIRT693607 SLC39A1 solute carrier family 39 member 1 2 2
MIRT695927 ZNF174 zinc finger protein 174 2 2
MIRT697987 TSPAN6 tetraspanin 6 2 2
MIRT700821 PHLDA2 pleckstrin homology like domain family A member 2 2 2
MIRT701350 NR4A3 nuclear receptor subfamily 4 group A member 3 2 2
MIRT702348 KLHL7 kelch like family member 7 2 2
MIRT703387 GABPB1 GA binding protein transcription factor beta subunit 1 2 2
MIRT703883 ERBB2IP erbb2 interacting protein 2 2
MIRT708237 PPP1R26 protein phosphatase 1 regulatory subunit 26 2 2
MIRT708629 NUDT18 nudix hydrolase 18 2 2
MIRT708990 CABP4 calcium binding protein 4 2 2
MIRT709804 FOXE1 forkhead box E1 2 2
MIRT710203 FLVCR1 feline leukemia virus subgroup C cellular receptor 1 2 2
MIRT710248 VAMP1 vesicle associated membrane protein 1 2 2
MIRT710281 FGF1 fibroblast growth factor 1 2 2
MIRT712992 IRGQ immunity related GTPase Q 2 2
MIRT713887 MOB3A MOB kinase activator 3A 2 2
MIRT715600 ADAM17 ADAM metallopeptidase domain 17 2 2
MIRT715639 ZBTB8B zinc finger and BTB domain containing 8B 2 2
MIRT715686 FRK fyn related Src family tyrosine kinase 2 2
MIRT717053 WIZ widely interspaced zinc finger motifs 2 2
MIRT717611 DSTYK dual serine/threonine and tyrosine protein kinase 2 2
MIRT721539 DKK3 dickkopf WNT signaling pathway inhibitor 3 2 2
MIRT722096 SUSD1 sushi domain containing 1 2 2
MIRT722435 HRNR hornerin 2 2
MIRT722855 NEGR1 neuronal growth regulator 1 2 2
MIRT724621 SNAP25 synaptosome associated protein 25 2 2
MIRT724777 PSG4 pregnancy specific beta-1-glycoprotein 4 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-6819 Ceritinib 57379345 NSC776422 approved resistant High Non-Small Cell Lung Cancer cell line (H3122, H2228)
hsa-miR-6819-3p Ceritinib 57379345 NSC776422 approved resistant High Non-Small Cell Lung Cancer cell line (H3122, H2228)
hsa-miR-6819-3p Cisplatin 5460033 NSC119875 approved resistant High Hypopharyngeal Cancer cell line (FaDu)
hsa-miR-6819-3p Gefitinib 123631 NSC715055 approved sensitive cell line (PC9)
hsa-miR-6819-3p Osimertinib 71496458 NSC779217 approved resistant cell line (HCC827)
hsa-miR-6819-3p Gefitinib 123631 NSC715055 approved resistant cell line (HCC827)
hsa-miR-6819-3p Osimertinib 71496458 NSC779217 approved resistant cell line (H1975)
hsa-miR-6819-3p Cisplatin 5460033 NSC119875 approved resistant cell line (A2780)

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