pre-miRNA Information
pre-miRNA hsa-mir-3120   
Genomic Coordinates chr1: 172138808 - 172138888
Description Homo sapiens miR-3120 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-3120-5p
Sequence 13| CCUGUCUGUGCCUGCUGUACA |33
Evidence Experimental
Experiments Illumina
Editing Events in miRNAs
Modification Type Position on miR Chromosome DNA Strand Genomic Position (hg38) List of PMIDs Variant details
A-to-I 19 1 + 172138838 26449202, 27587585 MiREDiBase
DRVs in miRNA
Mutant ID Mutant Position Mutant Source
COSN26637643 8 COSMIC
COSN31603497 11 COSMIC
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs750386761 8 dbSNP
rs760725207 9 dbSNP
rs766486759 10 dbSNP
rs754055278 12 dbSNP
rs755288536 19 dbSNP
rs754726014 21 dbSNP
Putative Targets

Gene Information
Gene Symbol MOB4   
Synonyms 2C4D, CGI-95, MOB1, MOB3, MOBKL3, PHOCN, PREI3
Description MOB family member 4, phocein
Transcript NM_001100819   
Other Transcripts NM_015387 , NM_199482   
Expression
Putative miRNA Targets on MOB4
3'UTR of MOB4
(miRNA target sites are highlighted)
>MOB4|NM_001100819|3'UTR
   1 AGGGAATCATAGGAAAAATGTACTGATCATATAATTAACATTATGTACTGTATATATCATTTTAGACACATCAATCATGT
  81 ATCCATATTATAGCTTCTTTGTTTAGTATAGGTTTTTGTATGCTGGGTTTGCCTTTTAAAATGGGAAATACTTTTTAAGT
 161 TATTCATAAGCTGTATATTCACCAGTGTGGCACTCATGGTTTTTAAATAAGATTAGTATTATCTGTTTATAATGCCTGTT
 241 AATAAAAGAATTTACAGTTTGGTAAAATTGCTGCTAAACAATCATTGGATCACAATCCTCATCAGACAAACCCATCTGTA
 321 AAAAAAATGAGGGAGAGCTTGAGGTTTCACACAAGCCATTTACTAAAGAGGTAGAAATGTTTTCTATTGGTTTTACCTTG
 401 AGTTTAGATATCCTAAAAAATTCTGTAGTACGTAGTTTTGTCTTACCTGTTAACTTTCCCCAATTGAGATAAAAGTGTTT
 481 TAAAATTCTGTTTATAGTTTTTGATATGCATATATAATTATGTGTATATCTAAATACAAATGCAAATGAAGCATTAGTAA
 561 TACTTAAATAATTTTACTGTGCTACATAAAGTATAACATACTTGGAAAGGATTTACCGTTCTGCAACAACGGACTGGTAC
 641 ATACAGGATGATCACAATGGTAAGGCACATAAATTATTTTCCCACTGGAAACCTGCCCTGTCCACCCCTTCTCATTTCCC
 721 TTAACCTTATCTTCAAACTACTTTAGCTGAGAAGCTTTTCACCAGACTGAGTTAGTGGTGGCTTATACCTATTTATATTT
 801 GTATTAATTGCTTACAGATTATACCTCATATTAGCAATTACATTACACTACAAGAAAATGTATTTGCATAGGCTCTTGCT
 881 TATCTTTGTTTTGCAAAATTGTTCTACTTAGAAAACAGTCCTTAAAATAGTTTGACTCTTCCTGTTAGTAATATATTAAT
 961 CTTTCATTTAACCAGCTAGGCAGCATTAAATAGAATTGAAGAAATACCATAGTATTTATTTTACACCCCCTCTCCCACGA
1041 AGTTTATGTTTGGATTACATGCACGTGTGAGATTATTTGCAATAATTCATAGGTTCCAAGGGTGTTGATGAATAGTCATA
1121 CATTTTTTTGGACTTTGTTATAATTCATTGTGGTAAGAATGATTGAAATGCAGATTTAACAATCTTATAATCTATTGAAT
1201 GCCATTTTTGATAAAGCACTGGAGGTCTTATTGCCAAACTGATTGTAATGAGGCAGTAAGGGTGAAAACATTGTACATGT
1281 TGTGAAGAAAGTATTTAAATCCAACTTTTGAACAGATTTAACAAACATGAGGAACTTTTTTATTTAGAAGGATAATTTTG
1361 AAGATGAAAATGTATTCATCTTAATTGTTTTTTCAAATTTAAGGGAATAATTTATACCATCTTTTCAGACAAGAATGTAC
1441 AGCAAAAATAAGGGGAACAGTAGTATACTGAGAGTGTGTGTATGTATAGTGTATGCCTTTCCAAGCTTGCCAGTCTTTTT
1521 GGCTTTGAACACTGCCCATCAGCTACAGTCATTACTGTTCCCCAACCCACAACTATCTTTTAAGAAGTCTTAGTTCACAG
1601 TGAAAGGAATGATGACTTTGAAATTATGGATTTATATTAATGGCACTATAAACCAATGGTAATGGTAATTTTTAAACTTG
1681 CTAAATATTGAGAAACTAAACTACTAAGTTAATAAATTATATATAGCAGTGTAGCTGTTCTCTCTAGATGGTGTCTCACA
1761 ATGGATTTCTGTTGCTTGACTATTTTCTTAGTGAATATTTATACTAAGGTAGTGACTGAGATTTGGTGATCTGGCTGAGT
1841 ATTTTGAAACACATTTTGAATAATATGGCTTAGTGTTAACGGGGACTTAAATATGATTTTTTTTTCTTACTCATTTCACC
1921 TTCCCTGTACTGTATGTTTGGAATTGATCATAAAACATCTCCAAAAGAAAATAATCAGTTTGTAGTCTTGCTTTTGTATT
2001 CATGTTGATAATCTTACTAATTGTGAAGTTGATTCACTACTATACTAGGTAAGACCTAAGTGAAACAGTTCCTGTTTTTC
2081 CTTAATACTGTTTTCAGAATTTTGAAAATGTACTTATATATACATAAATACTACTAAAAAATTAATGAGCCTGGCAAACC
2161 ATTGATTTATAAAAGTAAGTGTTCTAAGAGGGGAACAAGACAGTTCTGTGTGATAAGGAAGTTAGGCTCCACTTTTTGTT
2241 TGAATTACCCTATGTATATCCGAAGGTAAACTTAGGCTTTTCTTTCCAAAAGATCGTATAGTCAATTCATTCTTTTTCTC
2321 CTATCACATCTGGGAAAGTAGCTAACTTTTAACTATTTATGTTCCCATAAGTAACCCTTCTTTTGTGTGTATACATTTCC
2401 TTTTCTCTGACTTGAGATGTCAAATTTGGATTTCTAGAACAGTTTCTCAGTTAAATTCTTGATGACTTAACAACTTTTAC
2481 TATCAGAATACAATTAGAAATCCTTGGTCAGGCACAGGGGCTCACGCCTGTAATCCCAGCACTTTGGGAAGCCAAGGCAG
2561 ACAGATCACCTGAGGTCAGGAGTTCGAGACCAGCCTGACCAACATGGAGAAACCCTGTCTCTACTAAAAATACAAAAATT
2641 AGCCGGGCGTGGTGCTACTCGTGAGGCTGAGGCAGGAGAATCGCTTGAACCCGGGAGGTGGAGGTTGCGGTGAGCTGAGA
2721 TCGTGCCATTGCACTCCAGCCTGGGTAACGAGCAAAACTCCGTCTCAAAAACTCCGTCTCAAAAAAAAAAAATCCTTGAT
2801 TACATTGTTAGTAAGGACTGTGTTACGATTATAAACACATTTATTGGTTGATGTCAAATTCACTGTAATAGTAGAACTAA
2881 GTTTTTTATGTGAGTACTTTGCCCTACTGTCTATATGATGACATCTTTTTTGAGCAGCTAAATTTTAAATTGTATATACT
2961 TTATTTTGTGAATCCTTGTTGAATGTGCTAAAGGTTTCTTTGTGTAGTTCTTCCATGCTATGCGAATATTTTAGTAAAAG
3041 TAGTTGATTTTTAAAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' acaugUCG--UCCGUGUCUGUCc 5'
               |||  |||  ||||||| 
Target 5' tgggaAGCCAAGG--CAGACAGa 3'
2545 - 2565 150.00 -13.60
2
miRNA  3' acaUGUC-GUCCGUGUCUGUCc 5'
             ||:| | ||:||| |||| 
Target 5' acaACGGACTGGTACATACAGg 3'
626 - 647 134.00 -20.60
3
miRNA  3' acaUGUCGUCCGU-GUCUGUcc 5'
             ||| :   || ||||||  
Target 5' atcACAATCCTCATCAGACAaa 3'
289 - 310 126.00 -6.60
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN30117434 15 COSMIC
COSN31586555 22 COSMIC
COSN30534770 53 COSMIC
COSN31610592 57 COSMIC
COSN30181876 66 COSMIC
COSN30160254 77 COSMIC
COSN19382089 86 COSMIC
COSN31559109 207 COSMIC
COSN31530018 249 COSMIC
COSN31596851 328 COSMIC
COSN21526024 426 COSMIC
COSN7156323 576 COSMIC
COSN31553364 647 COSMIC
COSN31564350 674 COSMIC
COSN21734580 802 COSMIC
COSN6163017 936 COSMIC
COSN7156324 938 COSMIC
COSN16105221 967 COSMIC
COSN31585606 994 COSMIC
COSN6163018 1018 COSMIC
COSN31522230 1048 COSMIC
COSN9870996 1216 COSMIC
COSN20097614 1363 COSMIC
COSN17075887 1640 COSMIC
COSN5493921 2239 COSMIC
COSN1817325 2416 COSMIC
COSN29861648 2446 COSMIC
COSN27160196 2447 COSMIC
COSN15765848 3038 COSMIC
COSN26245259 3049 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1167382202 4 dbSNP
rs1445819151 5 dbSNP
rs1032020620 9 dbSNP
rs1167810031 11 dbSNP
rs1483089942 16 dbSNP
rs1233183064 18 dbSNP
rs1233678881 24 dbSNP
rs1206829650 27 dbSNP
rs761839479 28 dbSNP
rs1197139773 29 dbSNP
rs1406524855 30 dbSNP
rs767306009 31 dbSNP
rs773290934 32 dbSNP
rs1008188593 36 dbSNP
rs1360142745 40 dbSNP
rs145276780 42 dbSNP
rs766654247 43 dbSNP
rs777115834 45 dbSNP
rs1225964423 46 dbSNP
rs1274535654 48 dbSNP
rs375483019 50 dbSNP
rs1279807445 55 dbSNP
rs1443981399 56 dbSNP
rs1368294354 57 dbSNP
rs1179680315 58 dbSNP
rs1255081704 59 dbSNP
rs1368010280 70 dbSNP
rs975457026 71 dbSNP
rs1423617004 73 dbSNP
rs1172330457 75 dbSNP
rs1409123336 79 dbSNP
rs1179283206 88 dbSNP
rs544029948 89 dbSNP
rs1251339151 97 dbSNP
rs1223404545 102 dbSNP
rs1318148580 105 dbSNP
rs185836058 111 dbSNP
rs1219238630 113 dbSNP
rs1321020865 121 dbSNP
rs1284753530 123 dbSNP
rs1225246504 124 dbSNP
rs1348316201 128 dbSNP
rs532623912 133 dbSNP
rs908793023 134 dbSNP
rs1429094392 143 dbSNP
rs938876160 144 dbSNP
rs1292324100 146 dbSNP
rs1056857663 151 dbSNP
rs1174200512 151 dbSNP
rs14657 153 dbSNP
rs1377284992 155 dbSNP
rs1413049084 157 dbSNP
rs1455968646 158 dbSNP
rs915571769 169 dbSNP
rs879156594 176 dbSNP
rs1053337 182 dbSNP
rs1302435185 184 dbSNP
rs188364358 188 dbSNP
rs1362982890 190 dbSNP
rs1190666124 194 dbSNP
rs748476204 198 dbSNP
rs1261236989 205 dbSNP
rs1293958493 213 dbSNP
rs1365080948 215 dbSNP
rs1235579082 217 dbSNP
rs948476986 220 dbSNP
rs1349365117 225 dbSNP
rs1042847090 226 dbSNP
rs193156924 230 dbSNP
rs1325205047 234 dbSNP
rs999103140 239 dbSNP
rs1385716539 240 dbSNP
rs1052920889 249 dbSNP
rs1255029765 267 dbSNP
rs1433381691 280 dbSNP
rs184003852 282 dbSNP
rs1177566585 283 dbSNP
rs1471109297 286 dbSNP
rs890409847 289 dbSNP
rs188731602 296 dbSNP
rs1429130040 301 dbSNP
rs1019603570 305 dbSNP
rs899823949 308 dbSNP
rs1463401536 312 dbSNP
rs1247226636 318 dbSNP
rs1396839805 320 dbSNP
rs1027495453 329 dbSNP
rs568010982 329 dbSNP
rs1231891719 330 dbSNP
rs952790203 331 dbSNP
rs983357208 353 dbSNP
rs1226897541 356 dbSNP
rs1015760428 372 dbSNP
rs1455589084 373 dbSNP
rs1287352317 380 dbSNP
rs1400344921 387 dbSNP
rs960312227 390 dbSNP
rs1442142201 395 dbSNP
rs993066156 403 dbSNP
rs181371049 411 dbSNP
rs948382542 412 dbSNP
rs1389467985 432 dbSNP
rs1184044868 433 dbSNP
rs1443861310 439 dbSNP
rs1253656460 445 dbSNP
rs556583357 449 dbSNP
rs1480737765 458 dbSNP
rs1276218518 464 dbSNP
rs1316097082 465 dbSNP
rs1342162443 466 dbSNP
rs1316269582 471 dbSNP
rs1247465591 473 dbSNP
rs1339027543 475 dbSNP
rs978417404 476 dbSNP
rs1300063965 477 dbSNP
rs763110700 494 dbSNP
rs1317001067 497 dbSNP
rs1429182754 500 dbSNP
rs1369879774 505 dbSNP
rs925696378 511 dbSNP
rs536988559 513 dbSNP
rs1366543035 521 dbSNP
rs1186553769 526 dbSNP
rs550345812 544 dbSNP
rs1053398750 554 dbSNP
rs1179402774 558 dbSNP
rs1265886395 561 dbSNP
rs1482411229 571 dbSNP
rs1293172040 574 dbSNP
rs773078783 579 dbSNP
rs1464231625 588 dbSNP
rs1214147295 594 dbSNP
rs890276018 599 dbSNP
rs1477036418 601 dbSNP
rs116325631 611 dbSNP
rs539490073 612 dbSNP
rs766360053 618 dbSNP
rs900397221 619 dbSNP
rs1407062739 622 dbSNP
rs552806888 623 dbSNP
rs996809044 626 dbSNP
rs1388211145 631 dbSNP
rs375329015 632 dbSNP
rs1328394739 635 dbSNP
rs535448058 638 dbSNP
rs1179512460 639 dbSNP
rs866148498 642 dbSNP
rs183727771 652 dbSNP
rs1436315372 656 dbSNP
rs867905992 658 dbSNP
rs13727 661 dbSNP
rs1267264109 665 dbSNP
rs1206094260 685 dbSNP
rs544165738 687 dbSNP
rs1224988189 694 dbSNP
rs1016204809 696 dbSNP
rs1324513999 709 dbSNP
rs1276748960 714 dbSNP
rs563853597 726 dbSNP
rs1434396860 741 dbSNP
rs1329277990 745 dbSNP
rs960214619 749 dbSNP
rs1435576142 761 dbSNP
rs992968192 764 dbSNP
rs1023231650 772 dbSNP
rs1156650484 781 dbSNP
rs1456421786 783 dbSNP
rs970258531 787 dbSNP
rs577390320 796 dbSNP
rs1173884449 801 dbSNP
rs978876846 810 dbSNP
rs760580235 811 dbSNP
rs1194456475 818 dbSNP
rs763968842 824 dbSNP
rs1466552929 825 dbSNP
rs189620240 832 dbSNP
rs1461987272 838 dbSNP
rs1280920629 847 dbSNP
rs766571595 853 dbSNP
rs756931653 859 dbSNP
rs1274219272 861 dbSNP
rs1220658698 872 dbSNP
rs1233420226 874 dbSNP
rs1367238674 876 dbSNP
rs1318358493 882 dbSNP
rs1434079926 888 dbSNP
rs1281747783 895 dbSNP
rs1359381787 900 dbSNP
rs911616224 907 dbSNP
rs944554511 922 dbSNP
rs764956082 923 dbSNP
rs1038806205 925 dbSNP
rs1168634300 927 dbSNP
rs900428194 931 dbSNP
rs750030883 936 dbSNP
rs1388854200 942 dbSNP
rs930573725 943 dbSNP
rs1475696767 948 dbSNP
rs1167534164 949 dbSNP
rs1239458726 953 dbSNP
rs1048908667 971 dbSNP
rs888440417 972 dbSNP
rs1004727542 973 dbSNP
rs1344310600 973 dbSNP
rs1295221874 974 dbSNP
rs1405170237 986 dbSNP
rs1379562101 992 dbSNP
rs182095023 994 dbSNP
rs773096416 997 dbSNP
rs1037132306 1006 dbSNP
rs528631391 1011 dbSNP
rs1431033081 1012 dbSNP
rs1369260635 1019 dbSNP
rs895870929 1021 dbSNP
rs1406354467 1023 dbSNP
rs548165904 1025 dbSNP
rs187415700 1033 dbSNP
rs1351560628 1039 dbSNP
rs530693781 1040 dbSNP
rs1252803647 1047 dbSNP
rs1184439731 1055 dbSNP
rs757992168 1058 dbSNP
rs1272418198 1065 dbSNP
rs550483259 1066 dbSNP
rs149124891 1069 dbSNP
rs1291820649 1083 dbSNP
rs1226398164 1092 dbSNP
rs1288524683 1099 dbSNP
rs1411149447 1101 dbSNP
rs191430444 1112 dbSNP
rs1033117136 1122 dbSNP
rs955752862 1134 dbSNP
rs988852044 1137 dbSNP
rs546628962 1138 dbSNP
rs1405065520 1143 dbSNP
rs1273605846 1149 dbSNP
rs1412986595 1154 dbSNP
rs566442046 1157 dbSNP
rs1161577718 1172 dbSNP
rs1471669087 1177 dbSNP
rs1251225998 1182 dbSNP
rs1191820662 1183 dbSNP
rs535584825 1185 dbSNP
rs530024584 1187 dbSNP
rs765709814 1189 dbSNP
rs974584198 1189 dbSNP
rs921760383 1191 dbSNP
rs930584648 1195 dbSNP
rs1048952147 1205 dbSNP
rs1326618403 1213 dbSNP
rs907759928 1219 dbSNP
rs34094655 1221 dbSNP
rs747568736 1222 dbSNP
rs1370363575 1231 dbSNP
rs1486042292 1240 dbSNP
rs1292229174 1241 dbSNP
rs940045440 1245 dbSNP
rs1436230770 1270 dbSNP
rs1190278656 1271 dbSNP
rs1389789699 1285 dbSNP
rs1036995128 1291 dbSNP
rs895943916 1302 dbSNP
rs1235966769 1305 dbSNP
rs1472660860 1309 dbSNP
rs1176889610 1311 dbSNP
rs1014342544 1318 dbSNP
rs1422263499 1321 dbSNP
rs1434924042 1323 dbSNP
rs1428444022 1327 dbSNP
rs1189359327 1330 dbSNP
rs1044615244 1343 dbSNP
rs867390693 1350 dbSNP
rs3838584 1359 dbSNP
rs59524141 1359 dbSNP
rs143577743 1360 dbSNP
rs1259710331 1369 dbSNP
rs1434837088 1373 dbSNP
rs1335730572 1377 dbSNP
rs1299854271 1381 dbSNP
rs1313386013 1381 dbSNP
rs755566958 1385 dbSNP
rs1000749848 1388 dbSNP
rs1366530214 1390 dbSNP
rs181594861 1400 dbSNP
rs1388199404 1401 dbSNP
rs1009905609 1405 dbSNP
rs1303597224 1412 dbSNP
rs1270621101 1420 dbSNP
rs1367254150 1422 dbSNP
rs1175426674 1427 dbSNP
rs1018560615 1431 dbSNP
rs1390710529 1438 dbSNP
rs1190274964 1450 dbSNP
rs1447372788 1455 dbSNP
rs1273866516 1458 dbSNP
rs1260631572 1467 dbSNP
rs1200633763 1470 dbSNP
rs748529044 1471 dbSNP
rs769999697 1475 dbSNP
rs1253788901 1481 dbSNP
rs3792157 1490 dbSNP
rs1276726282 1492 dbSNP
rs974451752 1497 dbSNP
rs1442124746 1498 dbSNP
rs1226678953 1499 dbSNP
rs1326174490 1516 dbSNP
rs185364211 1523 dbSNP
rs537715361 1528 dbSNP
rs1398061811 1538 dbSNP
rs1377235975 1547 dbSNP
rs749469841 1574 dbSNP
rs532501436 1576 dbSNP
rs1188444748 1586 dbSNP
rs1170353668 1593 dbSNP
rs1396238066 1593 dbSNP
rs1434778877 1598 dbSNP
rs1173864053 1599 dbSNP
rs1399605599 1614 dbSNP
rs1187971219 1627 dbSNP
rs190013910 1629 dbSNP
rs1253636912 1645 dbSNP
rs1186609560 1646 dbSNP
rs1318582679 1648 dbSNP
rs56197471 1652 dbSNP
rs1277435127 1653 dbSNP
rs984997659 1662 dbSNP
rs774433498 1669 dbSNP
rs1339282941 1676 dbSNP
rs1266464932 1678 dbSNP
rs1247442712 1681 dbSNP
rs759570328 1683 dbSNP
rs1320150941 1691 dbSNP
rs1390515127 1693 dbSNP
rs1292837266 1697 dbSNP
rs1432660256 1704 dbSNP
rs1296751903 1709 dbSNP
rs1352369000 1711 dbSNP
rs1306225791 1713 dbSNP
rs747315527 1716 dbSNP
rs1371689379 1721 dbSNP
rs1389651094 1721 dbSNP
rs577329606 1726 dbSNP
rs1395665124 1738 dbSNP
rs768580974 1762 dbSNP
rs1163692480 1765 dbSNP
rs1459189725 1775 dbSNP
rs907789341 1783 dbSNP
rs562906218 1791 dbSNP
rs1273212218 1796 dbSNP
rs1253410926 1809 dbSNP
rs997487278 1812 dbSNP
rs1344412362 1813 dbSNP
rs546076810 1815 dbSNP
rs1037070094 1818 dbSNP
rs1046466 1822 dbSNP
rs1268591687 1838 dbSNP
rs891116579 1840 dbSNP
rs1008308222 1841 dbSNP
rs1463790168 1843 dbSNP
rs1015595009 1865 dbSNP
rs961862553 1866 dbSNP
rs2599 1867 dbSNP
rs1028003588 1873 dbSNP
rs1331451639 1874 dbSNP
rs1286593023 1880 dbSNP
rs1238413939 1881 dbSNP
rs1335101095 1882 dbSNP
rs1470048372 1883 dbSNP
rs1324061424 1895 dbSNP
rs1044519100 1897 dbSNP
rs905916217 1897 dbSNP
rs1456018689 1910 dbSNP
rs764937267 1914 dbSNP
rs572983280 1921 dbSNP
rs1200359478 1923 dbSNP
rs1469133968 1929 dbSNP
rs1201589088 1935 dbSNP
rs1378738628 1935 dbSNP
rs1054991293 1966 dbSNP
rs915618527 1977 dbSNP
rs541945132 1983 dbSNP
rs1158738209 1996 dbSNP
rs1466469966 1996 dbSNP
rs561718769 1997 dbSNP
rs1204643807 1998 dbSNP
rs750128318 2000 dbSNP
rs1276658627 2004 dbSNP
rs981195430 2009 dbSNP
rs924327101 2010 dbSNP
rs1368682693 2011 dbSNP
rs1455415554 2015 dbSNP
rs934832875 2020 dbSNP
rs1054652050 2023 dbSNP
rs1435463062 2028 dbSNP
rs1390407081 2029 dbSNP
rs762490148 2030 dbSNP
rs1315734556 2032 dbSNP
rs1018593397 2040 dbSNP
rs932950569 2041 dbSNP
rs1319717186 2045 dbSNP
rs1395106274 2052 dbSNP
rs901498358 2055 dbSNP
rs1388382877 2065 dbSNP
rs1321509032 2068 dbSNP
rs1395003244 2072 dbSNP
rs1050430895 2090 dbSNP
rs1330558377 2093 dbSNP
rs891131313 2098 dbSNP
rs1008150987 2105 dbSNP
rs142155261 2111 dbSNP
rs182646863 2118 dbSNP
rs1443193530 2121 dbSNP
rs984680591 2122 dbSNP
rs752615306 2126 dbSNP
rs1274263922 2141 dbSNP
rs564228550 2155 dbSNP
rs533306505 2156 dbSNP
rs1015163882 2158 dbSNP
rs1027518130 2161 dbSNP
rs755755601 2168 dbSNP
rs962018300 2171 dbSNP
rs1429648990 2176 dbSNP
rs1340683869 2182 dbSNP
rs1450514867 2205 dbSNP
rs1432249750 2216 dbSNP
rs1375387486 2218 dbSNP
rs1169729122 2232 dbSNP
rs1432136905 2235 dbSNP
rs1181952409 2242 dbSNP
rs992060258 2243 dbSNP
rs1186283351 2253 dbSNP
rs1253516843 2257 dbSNP
rs77185746 2258 dbSNP
rs9646751 2262 dbSNP
rs1012838939 2263 dbSNP
rs950046191 2269 dbSNP
rs1459274442 2271 dbSNP
rs748798577 2273 dbSNP
rs1023269864 2274 dbSNP
rs971064416 2277 dbSNP
rs1270689083 2286 dbSNP
rs981079497 2287 dbSNP
rs187558420 2292 dbSNP
rs151205062 2293 dbSNP
rs191202872 2296 dbSNP
rs1354223970 2297 dbSNP
rs914783993 2298 dbSNP
rs1412290634 2305 dbSNP
rs1310010186 2318 dbSNP
rs1353266119 2324 dbSNP
rs932775674 2326 dbSNP
rs183647045 2331 dbSNP
rs1409379785 2335 dbSNP
rs1406263991 2336 dbSNP
rs912787386 2338 dbSNP
rs1163010672 2343 dbSNP
rs944063049 2352 dbSNP
rs1323839402 2360 dbSNP
rs946324716 2368 dbSNP
rs1040621667 2372 dbSNP
rs1481613376 2388 dbSNP
rs1231035261 2390 dbSNP
rs902074098 2393 dbSNP
rs1451917521 2396 dbSNP
rs140159972 2399 dbSNP
rs897149898 2400 dbSNP
rs1340764741 2414 dbSNP
rs1231128331 2415 dbSNP
rs1205234065 2420 dbSNP
rs1029075049 2430 dbSNP
rs1288506950 2430 dbSNP
rs528349662 2441 dbSNP
rs1371832010 2444 dbSNP
rs1298060774 2461 dbSNP
rs1437673733 2463 dbSNP
rs1006370715 2464 dbSNP
rs1048955069 2465 dbSNP
rs1461172022 2469 dbSNP
rs72914979 2470 dbSNP
rs540158898 2472 dbSNP
rs866217569 2475 dbSNP
rs1256452901 2489 dbSNP
rs1425316235 2493 dbSNP
rs961892583 2503 dbSNP
rs1022906207 2508 dbSNP
rs991964978 2512 dbSNP
rs1478297186 2515 dbSNP
rs1024906952 2516 dbSNP
rs1211585714 2518 dbSNP
rs969252891 2521 dbSNP
rs553266741 2526 dbSNP
rs971325857 2527 dbSNP
rs1002775498 2531 dbSNP
rs927275591 2540 dbSNP
rs1314575785 2546 dbSNP
rs1220358886 2547 dbSNP
rs772080114 2554 dbSNP
rs1370339278 2562 dbSNP
rs571418992 2566 dbSNP
rs1440536668 2567 dbSNP
rs1170430639 2571 dbSNP
rs990621592 2576 dbSNP
rs1031374821 2586 dbSNP
rs1368711561 2587 dbSNP
rs955894359 2601 dbSNP
rs1429224296 2615 dbSNP
rs58837777 2618 dbSNP
rs1381669799 2621 dbSNP
rs1415038474 2625 dbSNP
rs1040484722 2626 dbSNP
rs1191531062 2632 dbSNP
rs1394647062 2632 dbSNP
rs200711891 2634 dbSNP
rs770009018 2634 dbSNP
rs923565033 2634 dbSNP
rs1021760952 2645 dbSNP
rs760476176 2646 dbSNP
rs1327400467 2649 dbSNP
rs1210198015 2650 dbSNP
rs1278738543 2653 dbSNP
rs756573652 2657 dbSNP
rs1366327473 2661 dbSNP
rs1273138548 2662 dbSNP
rs1286473896 2664 dbSNP
rs1361525109 2675 dbSNP
rs1339379153 2683 dbSNP
rs1203882008 2684 dbSNP
rs192832194 2693 dbSNP
rs1171640581 2694 dbSNP
rs1433995759 2695 dbSNP
rs912711960 2697 dbSNP
rs1172258965 2698 dbSNP
rs555450121 2699 dbSNP
rs972952907 2702 dbSNP
rs1486337831 2705 dbSNP
rs1024808845 2709 dbSNP
rs575193863 2710 dbSNP
rs931271749 2723 dbSNP
rs1253519940 2724 dbSNP
rs1048484787 2725 dbSNP
rs1225616112 2727 dbSNP
rs1002516575 2729 dbSNP
rs1313650010 2731 dbSNP
rs1416737482 2734 dbSNP
rs1034377085 2735 dbSNP
rs1353688863 2736 dbSNP
rs1312324397 2748 dbSNP
rs137857626 2750 dbSNP
rs990138317 2751 dbSNP
rs777797059 2754 dbSNP
rs564546238 2761 dbSNP
rs533062391 2762 dbSNP
rs556620980 2763 dbSNP
rs932260386 2772 dbSNP
rs540549132 2776 dbSNP
rs1186591725 2777 dbSNP
rs909439592 2779 dbSNP
rs1464680287 2780 dbSNP
rs201764936 2781 dbSNP
rs749575966 2781 dbSNP
rs879782593 2781 dbSNP
rs1035991770 2782 dbSNP
rs560364094 2787 dbSNP
rs1013331786 2791 dbSNP
rs1046290088 2792 dbSNP
rs1386075927 2799 dbSNP
rs891470310 2802 dbSNP
rs1330756326 2806 dbSNP
rs1389494364 2810 dbSNP
rs866361467 2812 dbSNP
rs1011631625 2813 dbSNP
rs1365160097 2819 dbSNP
rs1002018715 2820 dbSNP
rs1227025551 2825 dbSNP
rs529119525 2827 dbSNP
rs549060496 2828 dbSNP
rs957946477 2833 dbSNP
rs1180334269 2835 dbSNP
rs1418980231 2838 dbSNP
rs568979332 2840 dbSNP
rs985163945 2861 dbSNP
rs1215932419 2864 dbSNP
rs1268562710 2864 dbSNP
rs531472397 2866 dbSNP
rs1019774934 2867 dbSNP
rs1011993385 2874 dbSNP
rs1272722677 2882 dbSNP
rs568537223 2889 dbSNP
rs1277821967 2890 dbSNP
rs1352882374 2890 dbSNP
rs1236854973 2895 dbSNP
rs972962749 2902 dbSNP
rs1303966841 2904 dbSNP
rs976120727 2906 dbSNP
rs1368360620 2909 dbSNP
rs1324755797 2910 dbSNP
rs1255083588 2912 dbSNP
rs1386559253 2915 dbSNP
rs1156288101 2924 dbSNP
rs775213762 2926 dbSNP
rs140810714 2927 dbSNP
rs953688063 2954 dbSNP
rs931348382 2955 dbSNP
rs779036753 2957 dbSNP
rs766546723 2960 dbSNP
rs1252646628 2968 dbSNP
rs909460135 2972 dbSNP
rs1448936172 2975 dbSNP
rs571246500 2978 dbSNP
rs971754799 2982 dbSNP
rs1204627961 2989 dbSNP
rs1349887227 2990 dbSNP
rs1280896063 3002 dbSNP
rs13012711 3004 dbSNP
rs1236259069 3006 dbSNP
rs1191714896 3021 dbSNP
rs539713230 3024 dbSNP
rs918911157 3041 dbSNP
rs984552057 3054 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HEK293S
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in GSM1084043. RNA binding protein: AGO2. Condition:CLIP_arsenite_rep2 HITS-CLIP data was present in GSM1084069. RNA binding protein: AGO2. Condition:CLIP_emetine_SigmaAb HITS-CLIP data was present in GSM1084072. RNA binding protein: AGO2. Condition:CLIP_nohippuristanol_rep1_AbnovaAb ...

- Karginov FV; Hannon GJ, 2013, Genes & development.

Article - Karginov FV; Hannon GJ
- Genes & development, 2013
When adapting to environmental stress, cells attenuate and reprogram their translational output. In part, these altered translation profiles are established through changes in the interactions between RNA-binding proteins and mRNAs. The Argonaute 2 (Ago2)/microRNA (miRNA) machinery has been shown to participate in stress-induced translational up-regulation of a particular mRNA, CAT-1; however, a detailed, transcriptome-wide understanding of the involvement of Ago2 in the process has been lacking. Here, we profiled the overall changes in Ago2-mRNA interactions upon arsenite stress by cross-linking immunoprecipitation (CLIP) followed by high-throughput sequencing (CLIP-seq). Ago2 displayed a significant remodeling of its transcript occupancy, with the majority of 3' untranslated region (UTR) and coding sequence (CDS) sites exhibiting stronger interaction. Interestingly, target sites that were destined for release from Ago2 upon stress were depleted in miRNA complementarity signatures, suggesting an alternative mode of interaction. To compare the changes in Ago2-binding patterns across transcripts with changes in their translational states, we measured mRNA profiles on ribosome/polysome gradients by RNA sequencing (RNA-seq). Increased Ago2 occupancy correlated with stronger repression of translation for those mRNAs, as evidenced by a shift toward lighter gradient fractions upon stress, while release of Ago2 was associated with the limited number of transcripts that remained translated. Taken together, these data point to a role for Ago2 and the mammalian miRNAs in mediating the translational component of the stress response.
LinkOut: [PMID: 23824327]
CLIP-seq Support 1 for dataset GSM1084043
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_arsenite_rep2
Location of target site ENST00000233892.4 | 3UTR | ACAGAUCACCUGAGGUCAGGAGUUCGAGACCAGCCU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM1084069
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_emetine_SigmaAb
Location of target site ENST00000233892.4 | 3UTR | GACAGAUCACCUGAGGUCAGGAGU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
CLIP-seq Support 3 for dataset GSM1084072
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_nohippuristanol_rep1_AbnovaAb
Location of target site ENST00000233892.4 | 3UTR | ACAGAUCACCUGAGGUCAGGAGUU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
134 hsa-miR-3120-5p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT096972 BDP1 B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB 2 2
MIRT442624 LOX lysyl oxidase 2 2
MIRT473438 MDM4 MDM4, p53 regulator 2 2
MIRT490011 KIFC2 kinesin family member C2 2 2
MIRT496449 N6AMT1 N-6 adenine-specific DNA methyltransferase 1 2 2
MIRT496752 TGIF2 TGFB induced factor homeobox 2 2 2
MIRT497721 CYP1A1 cytochrome P450 family 1 subfamily A member 1 2 2
MIRT498287 PADI3 peptidyl arginine deiminase 3 2 2
MIRT503195 ACVR1B activin A receptor type 1B 2 4
MIRT504760 TEP1 telomerase associated protein 1 2 4
MIRT517810 UGDH UDP-glucose 6-dehydrogenase 2 6
MIRT519686 ZNF622 zinc finger protein 622 2 4
MIRT520263 URGCP upregulator of cell proliferation 2 2
MIRT523051 ICMT isoprenylcysteine carboxyl methyltransferase 2 2
MIRT525601 OLR1 oxidized low density lipoprotein receptor 1 2 4
MIRT526995 ARL8B ADP ribosylation factor like GTPase 8B 2 2
MIRT528699 TRAF3IP2 TRAF3 interacting protein 2 2 4
MIRT533142 WNT10A Wnt family member 10A 2 2
MIRT537618 ERI1 exoribonuclease 1 2 2
MIRT539707 EIF3H eukaryotic translation initiation factor 3 subunit H 2 2
MIRT539752 CNBP CCHC-type zinc finger nucleic acid binding protein 2 2
MIRT539808 GAPVD1 GTPase activating protein and VPS9 domains 1 2 2
MIRT539941 IFNAR2 interferon alpha and beta receptor subunit 2 2 2
MIRT540424 FAM83F family with sequence similarity 83 member F 2 2
MIRT540509 CXCL10 C-X-C motif chemokine ligand 10 2 2
MIRT540720 GUF1 GUF1 homolog, GTPase 2 2
MIRT541630 PARP2 poly(ADP-ribose) polymerase 2 2 2
MIRT542286 POLR3K RNA polymerase III subunit K 2 2
MIRT542456 AKR7A2 aldo-keto reductase family 7 member A2 2 2
MIRT542550 MRPS10 mitochondrial ribosomal protein S10 2 2
MIRT542771 PPAP2B phospholipid phosphatase 3 2 2
MIRT550085 TRAPPC2 trafficking protein particle complex 2 2 2
MIRT551458 CARKD NAD(P)HX dehydratase 2 2
MIRT555622 PHLPP2 PH domain and leucine rich repeat protein phosphatase 2 2 2
MIRT569136 KATNAL1 katanin catalytic subunit A1 like 1 2 2
MIRT572328 HSPB6 heat shock protein family B (small) member 6 2 2
MIRT574607 LZIC leucine zipper and CTNNBIP1 domain containing 2 2
MIRT575583 Mcm8 minichromosome maintenance 8 homologous recombination repair factor 2 4
MIRT576125 Hrk harakiri, BCL2 interacting protein (contains only BH3 domain) 2 5
MIRT576657 Fam216a family with sequence similarity 216, member A 2 2
MIRT607222 ACSM2A acyl-CoA synthetase medium chain family member 2A 2 4
MIRT607292 CD300E CD300e molecule 2 6
MIRT607746 ANGPT4 angiopoietin 4 2 2
MIRT607905 SPRYD4 SPRY domain containing 4 2 2
MIRT608159 HRK harakiri, BCL2 interacting protein 2 7
MIRT608657 ABCF3 ATP binding cassette subfamily F member 3 2 4
MIRT609115 ZNF703 zinc finger protein 703 2 6
MIRT610231 ACOT9 acyl-CoA thioesterase 9 2 2
MIRT610870 NUDCD3 NudC domain containing 3 2 2
MIRT611217 MC2R melanocortin 2 receptor 2 2
MIRT614858 PLEKHA6 pleckstrin homology domain containing A6 2 2
MIRT616966 LMX1A LIM homeobox transcription factor 1 alpha 2 2
MIRT617258 GLIPR1L2 GLI pathogenesis related 1 like 2 2 2
MIRT618009 SLC9A3R2 SLC9A3 regulator 2 2 2
MIRT619067 BSND barttin CLCNK type accessory beta subunit 2 4
MIRT619295 FAM26E calcium homeostasis modulator family member 5 2 2
MIRT619348 GINM1 glycoprotein integral membrane 1 2 2
MIRT619362 CFHR5 complement factor H related 5 2 2
MIRT619541 PIWIL2 piwi like RNA-mediated gene silencing 2 2 2
MIRT619782 NRIP2 nuclear receptor interacting protein 2 2 2
MIRT619994 NPAP1 nuclear pore associated protein 1 2 2
MIRT621030 CDC14B cell division cycle 14B 2 2
MIRT622033 STAT5A signal transducer and activator of transcription 5A 2 2
MIRT622728 PITPNM3 PITPNM family member 3 2 2
MIRT623144 NAV2 neuron navigator 2 2 2
MIRT623600 IPO9 importin 9 2 2
MIRT624608 B3GALT5 beta-1,3-galactosyltransferase 5 2 2
MIRT624905 CTCFL CCCTC-binding factor like 2 2
MIRT625030 SPC24 SPC24, NDC80 kinetochore complex component 2 2
MIRT625688 MCM8 minichromosome maintenance 8 homologous recombination repair factor 2 5
MIRT626531 EMCN endomucin 2 2
MIRT627204 ZDHHC20 zinc finger DHHC-type containing 20 2 2
MIRT628033 LSAMP limbic system-associated membrane protein 2 2
MIRT628203 FREM2 FRAS1 related extracellular matrix protein 2 2 2
MIRT631012 LINS lines homolog 1 2 2
MIRT633195 HSPE1-MOB4 HSPE1-MOB4 readthrough 2 2
MIRT633890 CACNG8 calcium voltage-gated channel auxiliary subunit gamma 8 2 2
MIRT634023 MOB4 MOB family member 4, phocein 2 2
MIRT634416 PLCXD3 phosphatidylinositol specific phospholipase C X domain containing 3 2 2
MIRT636866 ARSE arylsulfatase E (chondrodysplasia punctata 1) 2 2
MIRT642527 ANKRD9 ankyrin repeat domain 9 2 2
MIRT645408 FAM110A family with sequence similarity 110 member A 2 2
MIRT645635 SYTL4 synaptotagmin like 4 2 2
MIRT646013 TNFAIP8L2 TNF alpha induced protein 8 like 2 2 2
MIRT646686 ASGR2 asialoglycoprotein receptor 2 2 2
MIRT652838 TACO1 translational activator of cytochrome c oxidase I 2 2
MIRT655156 PHF21B PHD finger protein 21B 2 2
MIRT658491 EXOC7 exocyst complex component 7 2 2
MIRT659398 CORO2A coronin 2A 2 2
MIRT666825 PRCP prolylcarboxypeptidase 2 2
MIRT666866 POU2F2 POU class 2 homeobox 2 2 2
MIRT668224 GABRA1 gamma-aminobutyric acid type A receptor alpha1 subunit 2 2
MIRT673288 PDE3A phosphodiesterase 3A 2 2
MIRT673878 KLF2 Kruppel like factor 2 2 2
MIRT681721 KCNE4 potassium voltage-gated channel subfamily E regulatory subunit 4 2 2
MIRT682406 PARD6B par-6 family cell polarity regulator beta 2 2
MIRT684109 MCM10 minichromosome maintenance 10 replication initiation factor 2 2
MIRT684423 TUFT1 tuftelin 1 2 2
MIRT684684 OR7D2 olfactory receptor family 7 subfamily D member 2 2 2
MIRT686638 TMEM184C transmembrane protein 184C 2 2
MIRT689457 NXN nucleoredoxin 2 2
MIRT689627 NAA30 N(alpha)-acetyltransferase 30, NatC catalytic subunit 2 2
MIRT690773 PLA2G2C phospholipase A2 group IIC 2 2
MIRT690822 SGSM2 small G protein signaling modulator 2 2 2
MIRT693669 MXRA7 matrix remodeling associated 7 2 2
MIRT695553 CLPB ClpB homolog, mitochondrial AAA ATPase chaperonin 2 2
MIRT695872 C19orf52 translocase of inner mitochondrial membrane 29 2 2
MIRT698160 TNFRSF13C TNF receptor superfamily member 13C 2 2
MIRT699933 RUFY2 RUN and FYVE domain containing 2 2 2
MIRT708639 UBE2W ubiquitin conjugating enzyme E2 W 2 2
MIRT710816 RAB11FIP4 RAB11 family interacting protein 4 2 2
MIRT711242 TRAT1 T-cell receptor associated transmembrane adaptor 1 2 2
MIRT711542 MSH3 mutS homolog 3 2 2
MIRT711749 DTX1 deltex E3 ubiquitin ligase 1 2 2
MIRT712303 PGM2L1 phosphoglucomutase 2 like 1 2 2
MIRT712922 RPF2 ribosome production factor 2 homolog 2 2
MIRT714027 SYDE2 synapse defective Rho GTPase homolog 2 2 2
MIRT714768 TERF1 telomeric repeat binding factor 1 2 2
MIRT714844 ADAMTS17 ADAM metallopeptidase with thrombospondin type 1 motif 17 2 2
MIRT715223 NPVF neuropeptide VF precursor 2 2
MIRT716110 GMPS guanine monophosphate synthase 2 2
MIRT716174 FAM71F2 family with sequence similarity 71 member F2 2 2
MIRT716383 C6orf223 chromosome 6 open reading frame 223 2 2
MIRT716527 KSR2 kinase suppressor of ras 2 2 2
MIRT716962 P2RY6 pyrimidinergic receptor P2Y6 2 2
MIRT717605 DSTYK dual serine/threonine and tyrosine protein kinase 2 2
MIRT717696 PTGS1 prostaglandin-endoperoxide synthase 1 2 2
MIRT721360 ENTHD1 ENTH domain containing 1 2 2
MIRT721381 MACC1 MACC1, MET transcriptional regulator 2 2
MIRT721935 RASSF2 Ras association domain family member 2 2 2
MIRT722094 SUSD1 sushi domain containing 1 2 2
MIRT722837 C17orf102 chromosome 17 open reading frame 102 2 2
MIRT722990 TOR1A torsin family 1 member A 2 2
MIRT724174 ABCF2 ATP binding cassette subfamily F member 2 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-3120-5p Cisplatin 5460033 NSC119875 approved sensitive cell line
hsa-miR-3120-5p Prednisone/Azathioprine/Methotrexate/Cyclophosphamide/Mycophenolate mofetil sensitive tissue (myasthenia gravis)
hsa-miR-3120-5p Gemcitabine 60750 NSC613327 approved resistant cell line (PANC-1) (1500 ng/ml)

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