pre-miRNA Information
pre-miRNA hsa-mir-500b   
Genomic Coordinates chrX: 50010672 - 50010750
Description Homo sapiens miR-500b stem-loop
Comment None
RNA Secondary Structure
Associated Diseases

Mature miRNA Information
Mature miRNA hsa-miR-500b-3p
Sequence 51| GCACCCAGGCAAGGAUUCUG |70
Evidence Experimental
Experiments Illumina
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs782140253 8 dbSNP
Putative Targets

miRNA Expression profile
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol QPRT   
Synonyms HEL-S-90n, QPRTase
Description quinolinate phosphoribosyltransferase
Transcript NM_014298   
Expression
Putative miRNA Targets on QPRT
3'UTR of QPRT
(miRNA target sites are highlighted)
>QPRT|NM_014298|3'UTR
   1 TCCTAAACCGGAAGAGGATGACACCGGCCATGGGTTAACGTGGCTCCTCAGGACCCTCTGGGTCACACATCTTTAGGGTC
  81 AGTGGCCAATGGGGCACATTTGGCACTAGCTTGAGCCCAACTCTGGCTCTGCCACCTGCTGCTCCTGTGACCTGTCAGGG
 161 CTGACTTCACCTCTGCTCATCTCAGTTTCCTAATCTGTAAAATGGGTCTAATAAAGGATCAACCACATGGGGTTCTGCGG
 241 TGATAATGAGCACATAGTGAGGGGTCAGCAAATGTCAGAAGTTACCTGGGACAGCCGGGCACGATGGCTCACACCTGTAA
 321 TCCCAGCACTTTGGGAGGCTGAGGCGGGAAGATCACTTGAGTTCAGGAGTTTGAGACCAGCCTGGCCAACATGGTGAAAC
 401 CCCATCTCTACCAAAAATAGAAGAATTAGCTGGGTGTGGTGGCACGCGCCTGTAATCCCAGCTACTTAGGAGGCTGAGGC
 481 AGGAGAATCGCTTGAACCCAGGAAGTGGAGGTTGCAGTGAGCTGATGGTGCCACTGCACTCCAGCCTGGGTGATAGAGCG
 561 AGACTCTGTCTCCAAAGAAGAAACAAAGGAAAGAAAGAGAGAAAGAGAGAGGGAGGGAGGGAGGGAGGGAAAGGAAGGAT
 641 GGAAAGAAAGGAAGAAAGGCAGGCAAAAGCCCCAGACAGGCCAAAACCTTCATCCTTCATGCACCCAACCTGTACCAAAC
 721 ACCAGCATGGCCTGGCTGTGAGTGCACAGCAGATGGAGGTTTGCTGGGCAGAGACACTGGGCTGGCCTAGACACTGCCTT
 801 TGGTGATACCCTAAACCAAAGGGGCCAGTCCCACAGTAAGAAGGAGACCACTACTACTCCTGCTGCCCTCCTCCCCCCAC
 881 CTTGCCTAGTTTACAAGACAGGAGGAAAGAGAGAAAGCAAAAAGTTAGAAAACAAAACAAAACAGAAGTAAGATAAATAG
 961 CCAGAAGACCTTGGCGACACCACCCGGCCCTGGTAGTTAAAAAAAAGTAACAATAATAATAATATCAACCCCTGACCTAA
1041 ACTACTTGTGTTATCTGTAAATTCCAGACATTGTATGAAAAAGCATTGCAAAACTTTCTGCTCTGTTAGCTGATGCGTGT
1121 AGCCCCCAGTCACGTTCCCCGCTTGCTTGAGATATCATGACCCTTTCACGTGGACCCCTTAGAGTTGTAAGCCTTTAAAA
1201 AGGCCAAGAATTTCTTTTTCAGGGATCTCAGCTATTAAGATGCAAGTCTGCCAATGCTCCTGGCCAAATAAACCTCTTCC
1281 TTCTTTAAAAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' gucUUAGGAACGGACCCACg 5'
             | |||  ||||||||| 
Target 5' tgcACTCC-AGCCTGGGTGa 3'
535 - 553 156.00 -19.80
2
miRNA  3' guCUUAGGAACGGACCCACg 5'
            |||   ||  ||||||| 
Target 5' taGAAGAATTAGCTGGGTGt 3'
418 - 437 150.00 -15.80
3
miRNA  3' guCUUAGGAACGGACCCAcg 5'
            |:| |||   ||||||  
Target 5' caGGACCCT---CTGGGTca 3'
49 - 65 131.00 -16.60
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN30140398 8 COSMIC
COSN30503139 40 COSMIC
COSN1185127 78 COSMIC
COSN30725587 114 COSMIC
COSN25150856 298 COSMIC
COSN23058443 303 COSMIC
COSN20850705 447 COSMIC
COSN20934598 1054 COSMIC
COSN22659966 1155 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1253369636 3 dbSNP
rs770387231 5 dbSNP
rs1173866289 9 dbSNP
rs773418494 10 dbSNP
rs763127875 11 dbSNP
rs1167579900 12 dbSNP
rs1398328456 18 dbSNP
rs771217824 26 dbSNP
rs774735020 27 dbSNP
rs1370709349 29 dbSNP
rs1385597368 30 dbSNP
rs1298296391 31 dbSNP
rs759334458 32 dbSNP
rs767195269 40 dbSNP
rs562647622 41 dbSNP
rs1315728534 44 dbSNP
rs368447949 50 dbSNP
rs764024449 53 dbSNP
rs1373305358 63 dbSNP
rs975721533 67 dbSNP
rs1330699664 70 dbSNP
rs879110001 81 dbSNP
rs1222988903 82 dbSNP
rs1348322465 90 dbSNP
rs530133266 93 dbSNP
rs879232907 97 dbSNP
rs1285854674 101 dbSNP
rs1453231081 105 dbSNP
rs1381989674 108 dbSNP
rs1336089770 116 dbSNP
rs953333986 127 dbSNP
rs1450563778 145 dbSNP
rs986354357 152 dbSNP
rs1347170684 155 dbSNP
rs1002418757 156 dbSNP
rs1269518254 160 dbSNP
rs1406303464 175 dbSNP
rs1165394285 176 dbSNP
rs1033617928 183 dbSNP
rs1445696795 185 dbSNP
rs1385172827 190 dbSNP
rs148742903 195 dbSNP
rs1216074299 214 dbSNP
rs1465913121 216 dbSNP
rs1242305095 219 dbSNP
rs1214687074 221 dbSNP
rs1444942262 224 dbSNP
rs946783854 226 dbSNP
rs1291715804 228 dbSNP
rs1246450625 229 dbSNP
rs1358574183 231 dbSNP
rs1312913069 236 dbSNP
rs1243869641 238 dbSNP
rs756801317 239 dbSNP
rs1289645540 240 dbSNP
rs560506913 248 dbSNP
rs924025981 269 dbSNP
rs1343657551 270 dbSNP
rs528012822 271 dbSNP
rs1425750196 279 dbSNP
rs1365502252 284 dbSNP
rs1162264261 290 dbSNP
rs935296734 297 dbSNP
rs552614583 298 dbSNP
rs1185466216 301 dbSNP
rs899066776 303 dbSNP
rs1056493462 304 dbSNP
rs1274428266 315 dbSNP
rs896720093 316 dbSNP
rs994870895 344 dbSNP
rs1207269038 345 dbSNP
rs529783550 346 dbSNP
rs571122579 355 dbSNP
rs1214076256 356 dbSNP
rs767561691 361 dbSNP
rs1242025491 370 dbSNP
rs750682034 392 dbSNP
rs1045640532 394 dbSNP
rs1405897241 404 dbSNP
rs538645233 407 dbSNP
rs987580357 411 dbSNP
rs1019416286 419 dbSNP
rs887983736 420 dbSNP
rs1355633593 421 dbSNP
rs1169067865 423 dbSNP
rs186926848 424 dbSNP
rs974864890 441 dbSNP
rs1014587349 442 dbSNP
rs897596588 446 dbSNP
rs756323678 447 dbSNP
rs569018613 448 dbSNP
rs953398853 449 dbSNP
rs1348808596 464 dbSNP
rs1203908490 466 dbSNP
rs936249333 475 dbSNP
rs1265205681 476 dbSNP
rs989147427 483 dbSNP
rs535955660 490 dbSNP
rs1393517821 491 dbSNP
rs1270492232 492 dbSNP
rs370627762 503 dbSNP
rs1374680344 517 dbSNP
rs1354582656 524 dbSNP
rs1231295524 532 dbSNP
rs1021968948 537 dbSNP
rs1294728389 543 dbSNP
rs1335134374 550 dbSNP
rs1176554936 560 dbSNP
rs553641174 564 dbSNP
rs1046160769 565 dbSNP
rs1419523544 567 dbSNP
rs968500883 567 dbSNP
rs779881518 569 dbSNP
rs1281568203 573 dbSNP
rs906254619 574 dbSNP
rs749041883 583 dbSNP
rs1204387569 584 dbSNP
rs1323030560 589 dbSNP
rs1218575146 592 dbSNP
rs1242991132 594 dbSNP
rs1485548151 596 dbSNP
rs937854363 596 dbSNP
rs1222517476 597 dbSNP
rs1385664403 602 dbSNP
rs1186326470 604 dbSNP
rs1451353800 604 dbSNP
rs868388715 606 dbSNP
rs1439754784 609 dbSNP
rs558211926 609 dbSNP
rs746229906 609 dbSNP
rs746751672 609 dbSNP
rs1156701202 611 dbSNP
rs1420250736 615 dbSNP
rs1475675385 619 dbSNP
rs1385797815 622 dbSNP
rs1158017737 623 dbSNP
rs1405901461 629 dbSNP
rs923993414 630 dbSNP
rs1207170716 639 dbSNP
rs935432723 641 dbSNP
rs1260466159 650 dbSNP
rs191569593 656 dbSNP
rs1362202952 664 dbSNP
rs1412674559 676 dbSNP
rs374299210 679 dbSNP
rs992143562 682 dbSNP
rs1314539203 697 dbSNP
rs1244559910 705 dbSNP
rs1380001826 707 dbSNP
rs994758906 709 dbSNP
rs1382394495 716 dbSNP
rs1026615732 717 dbSNP
rs917965981 718 dbSNP
rs1355657288 732 dbSNP
rs948299948 738 dbSNP
rs1426381825 739 dbSNP
rs1162902320 743 dbSNP
rs886453951 746 dbSNP
rs1366743465 747 dbSNP
rs573435344 748 dbSNP
rs1195459704 752 dbSNP
rs1045284355 755 dbSNP
rs1429273431 756 dbSNP
rs1261315054 758 dbSNP
rs572975098 758 dbSNP
rs1214897581 760 dbSNP
rs888026575 764 dbSNP
rs368559265 765 dbSNP
rs1237911839 770 dbSNP
rs1222334827 772 dbSNP
rs1354897796 779 dbSNP
rs1009288299 787 dbSNP
rs1227534294 791 dbSNP
rs558439582 796 dbSNP
rs547865254 799 dbSNP
rs1275989206 810 dbSNP
rs1406513605 812 dbSNP
rs1019053189 814 dbSNP
rs1277205867 833 dbSNP
rs1036500467 835 dbSNP
rs1352224236 837 dbSNP
rs1223921540 838 dbSNP
rs1287356022 839 dbSNP
rs1462619955 842 dbSNP
rs1347838284 857 dbSNP
rs1372686958 857 dbSNP
rs965144408 858 dbSNP
rs544247717 860 dbSNP
rs1260078924 863 dbSNP
rs1269995542 866 dbSNP
rs754762518 877 dbSNP
rs562535816 878 dbSNP
rs559245569 879 dbSNP
rs1030408379 887 dbSNP
rs1255740047 892 dbSNP
rs1231457546 895 dbSNP
rs1323851847 901 dbSNP
rs1471190719 902 dbSNP
rs560604225 903 dbSNP
rs527893197 912 dbSNP
rs1337451216 917 dbSNP
rs1432823291 929 dbSNP
rs927766807 931 dbSNP
rs1395801025 935 dbSNP
rs1175232674 939 dbSNP
rs937738259 944 dbSNP
rs1375854406 946 dbSNP
rs1430256648 953 dbSNP
rs1176140199 955 dbSNP
rs1054841011 959 dbSNP
rs183071117 962 dbSNP
rs968636533 975 dbSNP
rs188497108 976 dbSNP
rs1031533672 977 dbSNP
rs1337223788 978 dbSNP
rs886338517 979 dbSNP
rs1357034093 983 dbSNP
rs1262184580 985 dbSNP
rs1008929024 986 dbSNP
rs748098735 987 dbSNP
rs1279945764 989 dbSNP
rs992291841 993 dbSNP
rs544312498 998 dbSNP
rs1238192061 999 dbSNP
rs560872469 999 dbSNP
rs996221788 1000 dbSNP
rs918000768 1003 dbSNP
rs1454700312 1005 dbSNP
rs1407104421 1006 dbSNP
rs76812292 1007 dbSNP
rs1333806888 1008 dbSNP
rs562825765 1009 dbSNP
rs1033025933 1012 dbSNP
rs1410563417 1012 dbSNP
rs957549505 1012 dbSNP
rs1010799058 1013 dbSNP
rs1379015559 1014 dbSNP
rs1184891982 1020 dbSNP
rs1444788426 1023 dbSNP
rs969374236 1024 dbSNP
rs1242115796 1030 dbSNP
rs1207524234 1031 dbSNP
rs981197471 1035 dbSNP
rs564771044 1036 dbSNP
rs1282831307 1041 dbSNP
rs1134700 1046 dbSNP
rs1351395652 1053 dbSNP
rs942314148 1056 dbSNP
rs981837886 1062 dbSNP
rs777421340 1073 dbSNP
rs919464897 1075 dbSNP
rs550636079 1084 dbSNP
rs1446045073 1086 dbSNP
rs746720296 1087 dbSNP
rs568854031 1088 dbSNP
rs1051485701 1095 dbSNP
rs1179294655 1097 dbSNP
rs529663885 1101 dbSNP
rs745596508 1117 dbSNP
rs1007198977 1118 dbSNP
rs1043145564 1120 dbSNP
rs1195429440 1124 dbSNP
rs374291246 1129 dbSNP
rs1166068312 1132 dbSNP
rs1378204584 1135 dbSNP
rs1461286329 1137 dbSNP
rs151237278 1141 dbSNP
rs920317856 1142 dbSNP
rs1398133302 1149 dbSNP
rs192907141 1150 dbSNP
rs930485713 1153 dbSNP
rs1487207773 1154 dbSNP
rs1048009257 1156 dbSNP
rs1223074051 1159 dbSNP
rs1289005987 1159 dbSNP
rs998813227 1163 dbSNP
rs200724192 1168 dbSNP
rs1226695611 1169 dbSNP
rs769999765 1170 dbSNP
rs1040252654 1171 dbSNP
rs1305371505 1172 dbSNP
rs1338837537 1172 dbSNP
rs1324566410 1178 dbSNP
rs1349822932 1181 dbSNP
rs959829035 1183 dbSNP
rs900520080 1185 dbSNP
rs533752609 1188 dbSNP
rs558328485 1195 dbSNP
rs1014504830 1203 dbSNP
rs1411216194 1204 dbSNP
rs1054490253 1223 dbSNP
rs1169579097 1224 dbSNP
rs578127046 1234 dbSNP
rs1025033630 1235 dbSNP
rs893205444 1241 dbSNP
rs1332225747 1248 dbSNP
rs770716932 1249 dbSNP
rs980781977 1250 dbSNP
rs1219460080 1251 dbSNP
rs1309378683 1253 dbSNP
rs909240204 1260 dbSNP
rs1218204622 1265 dbSNP
rs1316299096 1266 dbSNP
rs545336279 1276 dbSNP
rs1405992499 1280 dbSNP
rs907327917 1281 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HEK293S
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in GSM1084046. RNA binding protein: AGO2. Condition:CLIP_noarsenite_rep4 HITS-CLIP data was present in GSM1084066. RNA binding protein: AGO2. Condition:CLIP_noemetine_SantaCruzAb HITS-CLIP data was present in GSM1084068. RNA binding protein: AGO2. Condition:CLIP_noemetine_SigmaAb HITS-CLIP data was present in GSM1084069. RNA binding protein: AGO2. Condition:CLIP_emetine_SigmaAb ...

- Karginov FV; Hannon GJ, 2013, Genes & development.

Article - Karginov FV; Hannon GJ
- Genes & development, 2013
When adapting to environmental stress, cells attenuate and reprogram their translational output. In part, these altered translation profiles are established through changes in the interactions between RNA-binding proteins and mRNAs. The Argonaute 2 (Ago2)/microRNA (miRNA) machinery has been shown to participate in stress-induced translational up-regulation of a particular mRNA, CAT-1; however, a detailed, transcriptome-wide understanding of the involvement of Ago2 in the process has been lacking. Here, we profiled the overall changes in Ago2-mRNA interactions upon arsenite stress by cross-linking immunoprecipitation (CLIP) followed by high-throughput sequencing (CLIP-seq). Ago2 displayed a significant remodeling of its transcript occupancy, with the majority of 3' untranslated region (UTR) and coding sequence (CDS) sites exhibiting stronger interaction. Interestingly, target sites that were destined for release from Ago2 upon stress were depleted in miRNA complementarity signatures, suggesting an alternative mode of interaction. To compare the changes in Ago2-binding patterns across transcripts with changes in their translational states, we measured mRNA profiles on ribosome/polysome gradients by RNA sequencing (RNA-seq). Increased Ago2 occupancy correlated with stronger repression of translation for those mRNAs, as evidenced by a shift toward lighter gradient fractions upon stress, while release of Ago2 was associated with the limited number of transcripts that remained translated. Taken together, these data point to a role for Ago2 and the mammalian miRNAs in mediating the translational component of the stress response.
LinkOut: [PMID: 23824327]
CLIP-seq Support 1 for dataset GSM1084046
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_noarsenite_rep4
Location of target site ENST00000395384.4 | 3UTR | UGAUGGUGCCACUGCACUCCAGCCUGGG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM1084066
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_noemetine_SantaCruzAb
Location of target site ENST00000395384.4 | 3UTR | CUGAUGGUGCCACUGCACUCCAGCCU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
CLIP-seq Support 3 for dataset GSM1084068
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_noemetine_SigmaAb
Location of target site ENST00000395384.4 | 3UTR | UGAUGGUGCCACUGCACUCCAGCCUGGGU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
CLIP-seq Support 4 for dataset GSM1084069
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_emetine_SigmaAb
Location of target site ENST00000395384.4 | 3UTR | UGAUGGUGCCACUGCACUCCAGCCUGGGU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
172 hsa-miR-500b-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT059905 HDGF heparin binding growth factor 2 4
MIRT235394 KDELR1 KDEL endoplasmic reticulum protein retention receptor 1 2 4
MIRT442246 PYGO1 pygopus family PHD finger 1 2 2
MIRT443591 ZNF439 zinc finger protein 439 2 4
MIRT453280 EFTUD2 elongation factor Tu GTP binding domain containing 2 2 2
MIRT463540 ZBTB7A zinc finger and BTB domain containing 7A 2 2
MIRT465589 TNRC6B trinucleotide repeat containing 6B 2 2
MIRT469462 REL REL proto-oncogene, NF-kB subunit 2 2
MIRT485449 KCTD15 potassium channel tetramerization domain containing 15 2 4
MIRT486682 WDR81 WD repeat domain 81 2 2
MIRT489078 POLM DNA polymerase mu 2 2
MIRT493734 GREM2 gremlin 2, DAN family BMP antagonist 2 2
MIRT494872 DYNLL2 dynein light chain LC8-type 2 2 2
MIRT496130 RNF103-CHMP3 RNF103-CHMP3 readthrough 2 2
MIRT496489 CHMP3 charged multivesicular body protein 3 2 2
MIRT496924 CLMN calmin 2 2
MIRT497297 TMEM119 transmembrane protein 119 2 2
MIRT499103 AGRN agrin 2 2
MIRT508979 CXorf38 chromosome X open reading frame 38 2 2
MIRT509911 NIPAL1 NIPA like domain containing 1 2 2
MIRT512820 ARRDC2 arrestin domain containing 2 2 4
MIRT512827 KBTBD6 kelch repeat and BTB domain containing 6 2 4
MIRT515360 MRPL52 mitochondrial ribosomal protein L52 2 2
MIRT516610 TRIM58 tripartite motif containing 58 2 2
MIRT517053 TLDC1 TBC/LysM-associated domain containing 1 2 2
MIRT517637 ZNF491 zinc finger protein 491 2 2
MIRT518270 LEAP2 liver enriched antimicrobial peptide 2 2 2
MIRT518625 STAR steroidogenic acute regulatory protein 2 2
MIRT518887 N4BP2L2 NEDD4 binding protein 2 like 2 2 2
MIRT519026 PAICS phosphoribosylaminoimidazole carboxylase and phosphoribosylaminoimidazolesuccinocarboxamide synthase 2 2
MIRT520365 UBE2G2 ubiquitin conjugating enzyme E2 G2 2 2
MIRT521106 SLC1A5 solute carrier family 1 member 5 2 2
MIRT521943 PHC3 polyhomeotic homolog 3 2 2
MIRT522253 NPEPPS aminopeptidase puromycin sensitive 2 2
MIRT522853 KIAA1551 KIAA1551 2 2
MIRT522868 KIAA1549 KIAA1549 2 2
MIRT524207 DDX19B DEAD-box helicase 19B 2 2
MIRT526004 ARHGAP27 Rho GTPase activating protein 27 2 2
MIRT527769 RRAD RRAD, Ras related glycolysis inhibitor and calcium channel regulator 2 2
MIRT527827 TMEM74B transmembrane protein 74B 2 2
MIRT527861 SMOC1 SPARC related modular calcium binding 1 2 2
MIRT528040 WT1 Wilms tumor 1 2 2
MIRT529802 ZDHHC8 zinc finger DHHC-type containing 8 2 2
MIRT531723 TARS threonyl-tRNA synthetase 2 2
MIRT531996 BARD1 BRCA1 associated RING domain 1 2 2
MIRT533338 UNC119B unc-119 lipid binding chaperone B 2 2
MIRT533621 TNFRSF13C TNF receptor superfamily member 13C 2 2
MIRT533652 TMOD2 tropomodulin 2 2 2
MIRT534397 SENP3 SUMO1/sentrin/SMT3 specific peptidase 3 2 2
MIRT538686 CCDC80 coiled-coil domain containing 80 2 2
MIRT540444 RBM43 RNA binding motif protein 43 2 2
MIRT542586 ZC3H12C zinc finger CCCH-type containing 12C 2 8
MIRT542796 PLEKHA3 pleckstrin homology domain containing A3 2 4
MIRT542991 ERC1 ELKS/RAB6-interacting/CAST family member 1 2 2
MIRT544424 ZNF460 zinc finger protein 460 2 4
MIRT545740 ESF1 ESF1 nucleolar pre-rRNA processing protein homolog 2 4
MIRT552618 ZBTB8A zinc finger and BTB domain containing 8A 2 2
MIRT554456 SAMD8 sterile alpha motif domain containing 8 2 2
MIRT569663 PRIM1 DNA primase subunit 1 2 2
MIRT569924 PCSK9 proprotein convertase subtilisin/kexin type 9 2 2
MIRT570140 IL1RL2 interleukin 1 receptor like 2 2 2
MIRT573558 TMEM120B transmembrane protein 120B 2 2
MIRT574282 OPRD1 opioid receptor delta 1 2 2
MIRT575335 Fbxo6 F-box protein 6 2 2
MIRT607057 IDS iduronate 2-sulfatase 2 2
MIRT607078 POM121L7 POM121 transmembrane nucleoporin like 7 pseudogene 2 2
MIRT607500 HEBP2 heme binding protein 2 2 2
MIRT607530 ABL2 ABL proto-oncogene 2, non-receptor tyrosine kinase 2 2
MIRT607808 RHBDL2 rhomboid like 2 2 2
MIRT608079 ZFP14 ZFP14 zinc finger protein 2 2
MIRT609119 NUDT3 nudix hydrolase 3 2 2
MIRT609745 PTCH1 patched 1 2 2
MIRT612904 HIF1AN hypoxia inducible factor 1 alpha subunit inhibitor 2 2
MIRT618720 PCSK2 proprotein convertase subtilisin/kexin type 2 2 2
MIRT618778 HLA-E major histocompatibility complex, class I, E 2 2
MIRT619015 SLC2A6 solute carrier family 2 member 6 2 2
MIRT623223 MSANTD4 Myb/SANT DNA binding domain containing 4 with coiled-coils 2 2
MIRT623819 GEMIN6 gem nuclear organelle associated protein 6 2 2
MIRT625704 OPTN optineurin 2 2
MIRT626437 CHDH choline dehydrogenase 2 2
MIRT628087 KAT7 lysine acetyltransferase 7 2 2
MIRT628936 APOB apolipoprotein B 2 2
MIRT633543 PGBD5 piggyBac transposable element derived 5 2 2
MIRT634348 SGOL1 shugoshin 1 2 2
MIRT634611 KIAA1919 major facilitator superfamily domain containing 4B 2 2
MIRT635243 QPRT quinolinate phosphoribosyltransferase 2 2
MIRT636681 BTLA B and T lymphocyte associated 2 2
MIRT636923 ZNF845 zinc finger protein 845 2 2
MIRT637606 ZNF554 zinc finger protein 554 2 2
MIRT639242 RANGAP1 Ran GTPase activating protein 1 2 2
MIRT640835 POLR3A RNA polymerase III subunit A 2 2
MIRT642098 FBXL2 F-box and leucine rich repeat protein 2 2 2
MIRT643087 PTPLAD2 3-hydroxyacyl-CoA dehydratase 4 1 1
MIRT643934 C17orf104 meiosis specific with coiled-coil domain 2 2
MIRT644353 FXN frataxin 2 2
MIRT645628 SF3A3 splicing factor 3a subunit 3 2 2
MIRT645754 FAM213A family with sequence similarity 213 member A 2 2
MIRT646329 MVB12B multivesicular body subunit 12B 2 2
MIRT646817 COX19 COX19, cytochrome c oxidase assembly factor 2 2
MIRT647019 ADCY2 adenylate cyclase 2 2 2
MIRT647621 IGSF9B immunoglobulin superfamily member 9B 2 2
MIRT648517 PIGG phosphatidylinositol glycan anchor biosynthesis class G 2 2
MIRT648871 ABCA6 ATP binding cassette subfamily A member 6 2 2
MIRT649620 ITPKC inositol-trisphosphate 3-kinase C 2 2
MIRT650062 CCDC134 coiled-coil domain containing 134 2 2
MIRT650734 TNFSF8 TNF superfamily member 8 2 2
MIRT652389 TMEM55A phosphatidylinositol-4,5-bisphosphate 4-phosphatase 2 2 2
MIRT654352 RBM27 RNA binding motif protein 27 2 2
MIRT655796 NOVA2 NOVA alternative splicing regulator 2 2 2
MIRT657329 HNRNPK heterogeneous nuclear ribonucleoprotein K 2 2
MIRT657734 GOSR1 golgi SNAP receptor complex member 1 2 2
MIRT660613 ANO6 anoctamin 6 2 2
MIRT661243 ARL17B ADP ribosylation factor like GTPase 17B 2 2
MIRT662245 PGBD4 piggyBac transposable element derived 4 2 2
MIRT662921 MED18 mediator complex subunit 18 2 2
MIRT662963 JPH2 junctophilin 2 2 2
MIRT663347 ZNF74 zinc finger protein 74 2 2
MIRT663528 MASTL microtubule associated serine/threonine kinase like 2 2
MIRT663547 CCR6 C-C motif chemokine receptor 6 2 2
MIRT663977 ZNF786 zinc finger protein 786 2 2
MIRT664084 METTL2B methyltransferase like 2B 2 2
MIRT664358 C16orf45 chromosome 16 open reading frame 45 2 2
MIRT664421 TIGD6 tigger transposable element derived 6 2 2
MIRT664476 ZYG11B zyg-11 family member B, cell cycle regulator 2 2
MIRT664979 TDRD1 tudor domain containing 1 2 2
MIRT665128 PYCRL pyrroline-5-carboxylate reductase 3 2 2
MIRT666259 SLC31A1 solute carrier family 31 member 1 2 2
MIRT666321 SLC16A10 solute carrier family 16 member 10 2 2
MIRT666881 POLQ DNA polymerase theta 2 2
MIRT668469 FADS6 fatty acid desaturase 6 2 2
MIRT669554 ALG14 ALG14, UDP-N-acetylglucosaminyltransferase subunit 2 2
MIRT669835 ISCA2 iron-sulfur cluster assembly 2 2 2
MIRT670185 CCDC142 coiled-coil domain containing 142 2 2
MIRT672020 PXMP4 peroxisomal membrane protein 4 2 2
MIRT672070 KIAA0930 KIAA0930 2 2
MIRT672475 RTTN rotatin 2 2
MIRT672851 ICOSLG inducible T-cell costimulator ligand 2 2
MIRT673090 AK1 adenylate kinase 1 2 2
MIRT673581 KDELC2 KDEL motif containing 2 2 2
MIRT674586 SLC35B4 solute carrier family 35 member B4 2 2
MIRT675001 STRN3 striatin 3 2 2
MIRT679018 MTMR10 myotubularin related protein 10 2 2
MIRT679680 STAT3 signal transducer and activator of transcription 3 2 2
MIRT682833 FLG2 filaggrin family member 2 2 2
MIRT682886 SAR1A secretion associated Ras related GTPase 1A 2 2
MIRT683442 AP3B2 adaptor related protein complex 3 beta 2 subunit 2 2
MIRT687040 RNF115 ring finger protein 115 2 2
MIRT691957 RHOH ras homolog family member H 2 2
MIRT694625 ZFPM1 zinc finger protein, FOG family member 1 2 2
MIRT695637 SLC26A2 solute carrier family 26 member 2 2 2
MIRT697640 WRN Werner syndrome RecQ like helicase 2 2
MIRT702009 MIDN midnolin 2 2
MIRT702034 MOGAT1 monoacylglycerol O-acyltransferase 1 2 2
MIRT704789 CDK6 cyclin dependent kinase 6 2 2
MIRT705728 AMMECR1L AMMECR1 like 2 2
MIRT705879 ADM adrenomedullin 2 2
MIRT706220 ACOT9 acyl-CoA thioesterase 9 2 2
MIRT708418 CERS4 ceramide synthase 4 2 2
MIRT709114 C3orf18 chromosome 3 open reading frame 18 2 2
MIRT709595 ITPA inosine triphosphatase 2 2
MIRT710945 MRPL45 mitochondrial ribosomal protein L45 2 2
MIRT712345 NLN neurolysin 2 2
MIRT712530 CYTH2 cytohesin 2 2 2
MIRT714019 ASCC1 activating signal cointegrator 1 complex subunit 1 2 2
MIRT717287 ARMC12 armadillo repeat containing 12 2 2
MIRT717733 FGF1 fibroblast growth factor 1 2 2
MIRT718083 CLIC5 chloride intracellular channel 5 2 2
MIRT718562 MUC20 mucin 20, cell surface associated 2 2
MIRT721639 MYLK3 myosin light chain kinase 3 2 2
MIRT722632 C8A complement C8 alpha chain 2 2
MIRT723177 CDCA4 cell division cycle associated 4 2 2
MIRT725523 FAM229B family with sequence similarity 229 member B 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-500b Methotrexate 126941 NSC740 approved resistant cell line (W1)
hsa-miR-500b-3p Gemcitabine 60750 NSC613327 approved resistant High Pancreatic Cancer cell line (AsPC-1)
hsa-miR-500b-3p Gefitinib 123631 NSC715055 approved resistant cell line (HCC827)
hsa-miR-500b-3p Osimertinib 71496458 NSC779217 approved resistant cell line (PC9)
hsa-miR-500b-3p Osimertinib 71496458 NSC779217 approved sensitive cell line (HCC827)
hsa-miR-500b-3p Vemurafenib 42611257 NSC761431 approved resistant cell line (451Lu)
hsa-miR-500b-3p Gefitinib 123631 NSC715055 approved sensitive cell line (HCC827)

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