miRTarBase - #MIRT635354


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pre-miRNA Information
pre-miRNA hsa-mir-4650-1   
Genomic Coordinates chr7: 67114322 - 67114397
Description Homo sapiens miR-4650-1 stem-loop
Comment None
RNA Secondary Structure
pre-miRNA hsa-mir-4650-2   
Genomic Coordinates chr7: 72697903 - 72697978
Description Homo sapiens miR-4650-2 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-4650-5p
Sequence 15| UCAGGCCUCUUUCUACCUU |33
Evidence Experimental
Experiments Illumina
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1332063492 8 dbSNP
rs914649075 9 dbSNP
rs1452034829 10 dbSNP
rs1489220537 15 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol CSMD2   
Synonyms dJ1007G16.1, dJ1007G16.2, dJ947L8.1
Description CUB and Sushi multiple domains 2
Transcript NM_052896   
Expression
Putative miRNA Targets on CSMD2
3'UTR of CSMD2
(miRNA target sites are highlighted)		 
>CSMD2|NM_052896|3'UTR
   1 CCACCCGGCCTGGCCGCCACCACCGCCACCGAGAGCCCCGCCTCCAGCAGCCGTTCCCCAGGGGGCAGGAAGTAGGCTCC
  81 CCTGAGCACAGTGCCCAGTGCCCATCTTCGTTCGTCTCCTTGCCTGTGTCTGCTACTGCTGGGACTCAGGCCCTCGCCCT
 161 GCCGCCATCTATGCCAGTTACCCTGGAGAGGACTCCTGCCGTGTCCTGAAAAGGCAGAAAAGGAAGAGGGGCTGCAGACA
 241 GAGGAAGAAAGTTTATGGATTTAAAATAGCAAAGCAACTTGTGGATCTGTGTGTGTGTGTGTGTGTATGGGCCTGATCAC
 321 ACACAAACACACACACCTCTCCTTCATTCACGTCCTATGGAAGAGACCATAAAGGCTTCAAAACTAGAAGTGCGCATGAA
 401 GGATGCTTCATGCCCTGTTCCCCACACAGAGAAGAGATGAAGAGGGGGAGGTACGGTCAGCTTTCAAAACAATATGCCCC
 481 CCGCCCATCCCATGTGTGAGGACATGGTGACTCGGTGACTGTAACAGTAGGACACATCCCATCATGCGGTCAGAGTGCAG
 561 AAACCCGGTCAGCGTGCAGAAACCAGCTGTCTGCTGATGAACGGCCCATCTGCACAGCGGCAGCAAGGATTACCCCAAGG
 641 GCAGGAAAAAAGTCTTTGGAAATAGATTGAAAATCAGTTTCTTTATTTTTTTCAAACACTGTTTTATTGAGTTCTAAACC
 721 CAGTGGATTAAAAAGTCATTTGGGTCCTGGGAAGCACTGGGAAAGAAGGGAGAGCCGGGGAGGATAGGGCAGGAGTCTGG
 801 CCAGGAGCCCAAGGTCAAGTCTGGCTGTCAACTGACAAAGAGAAGAGAAGACAAGTCTGTGGCCCAGACAGGATGCCAAG
 881 TCTGGGGGCAGCAGCAGGGTCCTTGAGAGAACAGGGGAGCAAGCCTGCCCCAGTACCCAAAAAACAATGGCTATCATGTA
 961 CTGGGGTTATTCTCTGTGCCTGACACTTTACCTGTAGTATTTCTAGTCTGCACAATAACACCAAAATGTAGGATTTGTTA
1041 TTCCCCTTTGACAGATGAGAAAACAGAAGCCTGCAAAGGTAAAGACAGAGTTAGGAAGTGTGGAGTCAGAATGCAAACCC
1121 AGATCAGTCTGCCCCAAAGTCCACTACACCAGCTGCCAGAAACCCTGTTCTAGAAGGGGCAGCTAAGAAGGGAGGAGCCG
1201 ATGAATCTCTACAGTAGCACTGTGGCCAGGTCTGGAAAGCCAGGCAAGACACCTGTGTGTCCTATCTGGGTTCTGCTGTC
1281 TCCGCGTAGGCAGCTTCGGGGCAAGGATTCAACTCCCCAGGCCTCCCACGGTTGGTGCTGGCTCCTTGGCTCCCAGCAGC
1361 CGCTGACCATAGCCAGCAAAAGACCTGGCAGGTCCTGAATCAAAACAACAGAGTGGCTGAAAGTCACACCTCTCCAGCTC
1441 CTTGCGAGTGGGTTTGATTGATTTTGACAGCTATATCATGCTTGGGTCGTTCATGAATTCCATGAGAATTGTTGGGAAGT
1521 TCATGAGTTTAGGAATCAAAGTATAGCATTTAGGGCCACTTTCTCTGTCCTCGGGAAGGCCCCCACAAGCTTAAGCCCCT
1601 GTATACGTGTGACATGCTGGCCTCAGAGATTCATGTCACATATTGAAATAGCAAATAGAAATGTGCAGGAGCGGAGGGAC
1681 AGCGACACCTGGTTCTTAAGCAAATTCTAGATTGGAACAATTAGAAGATCTGACTGATGTTAAGAGTGGCCAGAGGAAAG
1761 TGAGAGGCGTCCATTTCCAGCAGACACAATGGAGGCTGACAGAGGCAGGAGCCTACCCCTGGCCACACCACCTCTGGGAC
1841 ACGGCACCCCCCTGGGCCTGGAGGGAGAGGGCCAATCCAGACACACTCACACTCTCATCTCTTTCCTTGGCTGGAAACAA
1921 GTGCAGGAAGCTCCCCTCCCAATTTCTTATGCTCCCTTCCCCCTTACACTCCTCTCCTTCGACTGCTCCCTTCCCCCTTC
2001 TTATGCCCCTCTCAGACCACCCAGCGGATGCCTATTCCCGCCCCCCACCCCTCCCCTGCGTCTCCTTGTAAAGTTCCATG
2081 AGATGCTCGAGGAGCACCTGCTGGTGGGGCACCCAGCACTCTGCTGGGCATCACCCTCCGCACCCCTGACATTTCTCTCC
2161 ACCTCCAGAGGCTTGGAAGGGAACAGGGCAGATGAGGCCCTTCACCCACCATCTACGCCATATACCCATCACCATCCCAT
2241 GAGGAAAAAAAAAAAAGTAAAACAAAGACAAAAAAAATCTTTTGTACAGAGATATATTTTTATTATACAAAGTTTGTACA
2321 GTACCAAAAAAGAAAAAAAAAAAGGTGTAAATTTTTTTTTCATTATTGTAGGTAAACGGTAGTGGAAGCCTTTTTTGTAA
2401 ATGTAATAAAATGTATAAATATGGTTTTCAGAAAACATCAAGTGCTGTAAATATGTAATCTACACACCTTCTTGGCTTGT
2481 CTGCAGTATATACATTTAATTTATCTGTCTCTGTATATGAGGCTTCCCCCTGGGGTCCTGCATTATGGTACTTTCCTGAA
2561 TTTGAAAGCAATTTTAAATTTTTTGAATTCAAATAAAATATAAATTTTTGCATTGGTTTTCTTAC
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' uuccaucuuUCUCCGGACu 5'
                   ||||||:|| 
Target 5' tccacctccAGAGGCTTGg 3'
 2158 - 2176 134.00 -14.30
2 
miRNA  3' uucCAUCUUUCUCCGGACu 5'
             ||: : | :|||||| 
Target 5' tgtGTGTGTATGGGCCTGa 3'
 298 - 316 132.00 -12.50
3 
miRNA  3' uucCAUCUU----UC--UCCGGACu 5'
             |||| |    :|  |||:||| 
Target 5' acaGTAGCACTGTGGCCAGGTCTGg 3'
 1211 - 1235 128.00 -13.00
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN26972064 1 COSMIC
COSN31512422 1 COSMIC
COSN17957403 3 COSMIC
COSN30143340 16 COSMIC
COSN30506658 19 COSMIC
COSN30137301 30 COSMIC
COSN30453212 39 COSMIC
COSN26972066 40 COSMIC
COSN5026451 54 COSMIC
COSN6454009 131 COSMIC
COSN7990403 246 COSMIC
COSN1103248 275 COSMIC
COSN10047497 426 COSMIC
COSN16719740 459 COSMIC
COSN16726192 1062 COSMIC
COSN1103247 1204 COSMIC
COSN18784816 1431 COSMIC
COSN19075814 1924 COSMIC
COSN6454008 2099 COSMIC
COSN6454007 2158 COSMIC
COSN22714398 2266 COSMIC
COSN18784815 2308 COSMIC
COSN6034143 2353 COSMIC
COSN25311198 2358 COSMIC
COSN25036566 2454 COSMIC
COSN22838224 2499 COSMIC
COSN1103246 2857 COSMIC
COSN10047496 3007 COSMIC
COSN1103245 3007 COSMIC
COSN20094676 3181 COSMIC
COSN25611749 3230 COSMIC
COSN6454006 3349 COSMIC
COSN23045942 3545 COSMIC
COSN14856833 3617 COSMIC
COSN25825089 3862 COSMIC
COSN7217470 4133 COSMIC
COSN31639953 4500 COSMIC
COSN22279924 4884 COSMIC
COSN6454005 5034 COSMIC
COSN19662534 5090 COSMIC
COSN19662609 5139 COSMIC
COSN31520231 5173 COSMIC
COSN7470240 5190 COSMIC
COSN20094671 5226 COSMIC
COSN20094673 5227 COSMIC
COSN26650241 5285 COSMIC
COSN28733275 5314 COSMIC
COSN5740763 5317 COSMIC
COSN31535484 5360 COSMIC
COSN31606444 5411 COSMIC
COSN31489209 5458 COSMIC
rs10798959 2099 GWAS
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1026204466 3 dbSNP
rs1285700735 5 dbSNP
rs747765036 6 dbSNP
rs776310945 7 dbSNP
rs764136636 11 dbSNP
rs1332353066 13 dbSNP
rs201139787 14 dbSNP
rs145499643 15 dbSNP
rs529700677 15 dbSNP
rs779447156 16 dbSNP
rs1263931420 17 dbSNP
rs1168140209 18 dbSNP
rs144802253 19 dbSNP
rs1428250981 20 dbSNP
rs930193402 21 dbSNP
rs1461017274 22 dbSNP
rs758934954 24 dbSNP
rs367889259 25 dbSNP
rs1182785897 28 dbSNP
rs140074927 30 dbSNP
rs754279272 31 dbSNP
rs1185170075 32 dbSNP
rs1483717600 36 dbSNP
rs964519993 39 dbSNP
rs767914404 40 dbSNP
rs1305378120 43 dbSNP
rs752763690 46 dbSNP
rs767551024 47 dbSNP
rs1018849607 52 dbSNP
rs547464815 53 dbSNP
rs1471125504 60 dbSNP
rs1293312039 63 dbSNP
rs1167911341 74 dbSNP
rs1246331114 81 dbSNP
rs1375663440 94 dbSNP
rs1306854992 101 dbSNP
rs1444051590 104 dbSNP
rs1007049745 106 dbSNP
rs190091468 110 dbSNP
rs144791588 111 dbSNP
rs1243915733 126 dbSNP
rs999745624 130 dbSNP
rs4653183 131 dbSNP
rs1043755134 132 dbSNP
rs1196357488 134 dbSNP
rs1419382413 135 dbSNP
rs1378666013 137 dbSNP
rs368570386 138 dbSNP
rs1011401456 140 dbSNP
rs1029971221 143 dbSNP
rs2131776 148 dbSNP
rs967286435 152 dbSNP
rs1055218802 153 dbSNP
rs939135392 156 dbSNP
rs149418436 159 dbSNP
rs1161768881 160 dbSNP
rs1047656588 161 dbSNP
rs866041088 165 dbSNP
rs868588471 171 dbSNP
rs973125584 174 dbSNP
rs964812031 178 dbSNP
rs527462328 195 dbSNP
rs773617377 199 dbSNP
rs1232126568 200 dbSNP
rs542200791 203 dbSNP
rs574773865 210 dbSNP
rs1045699287 211 dbSNP
rs1359614630 215 dbSNP
rs1293301675 227 dbSNP
rs987189077 230 dbSNP
rs955509612 231 dbSNP
rs918818715 232 dbSNP
rs138955884 235 dbSNP
rs747701640 236 dbSNP
rs1283384177 248 dbSNP
rs186478099 249 dbSNP
rs1351046987 254 dbSNP
rs1404865301 258 dbSNP
rs1366323610 259 dbSNP
rs1274027005 266 dbSNP
rs75307146 267 dbSNP
rs953149716 268 dbSNP
rs150605914 271 dbSNP
rs1303878510 314 dbSNP
rs1471001256 320 dbSNP
rs1266501992 329 dbSNP
rs536850667 341 dbSNP
rs569571996 343 dbSNP
rs1198675375 345 dbSNP
rs777091572 352 dbSNP
rs554433413 353 dbSNP
rs1033737439 359 dbSNP
rs1358878602 371 dbSNP
rs536198666 391 dbSNP
rs1446080198 393 dbSNP
rs56216059 395 dbSNP
rs1401499168 414 dbSNP
rs531661446 417 dbSNP
rs547108826 418 dbSNP
rs1223481536 420 dbSNP
rs1481727265 425 dbSNP
rs1346647653 426 dbSNP
rs1305051022 429 dbSNP
rs967065410 431 dbSNP
rs1270175406 440 dbSNP
rs1019975075 442 dbSNP
rs1047625458 444 dbSNP
rs1402652130 445 dbSNP
rs1199534341 448 dbSNP
rs1175396108 450 dbSNP
rs1480736383 458 dbSNP
rs1487645190 464 dbSNP
rs929204843 466 dbSNP
rs1240011882 469 dbSNP
rs1184266116 474 dbSNP
rs1474835662 478 dbSNP
rs899120166 482 dbSNP
rs1038023889 483 dbSNP
rs1034152767 487 dbSNP
rs540677449 488 dbSNP
rs1277717373 496 dbSNP
rs11577524 503 dbSNP
rs907293002 506 dbSNP
rs60146414 510 dbSNP
rs994113582 515 dbSNP
rs1361430737 526 dbSNP
rs758149123 531 dbSNP
rs987157916 536 dbSNP
rs1433195353 543 dbSNP
rs1283782354 544 dbSNP
rs1404120830 551 dbSNP
rs1335857138 558 dbSNP
rs539033664 564 dbSNP
rs933093589 566 dbSNP
rs552766587 576 dbSNP
rs138242807 581 dbSNP
rs377191021 582 dbSNP
rs1419665023 586 dbSNP
rs1358767351 587 dbSNP
rs1332640281 590 dbSNP
rs1187720947 591 dbSNP
rs941589765 593 dbSNP
rs1183368538 594 dbSNP
rs1242077338 594 dbSNP
rs779032539 601 dbSNP
rs563921212 606 dbSNP
rs1203093701 613 dbSNP
rs1307394001 618 dbSNP
rs1430632029 619 dbSNP
rs542488372 623 dbSNP
rs530362802 628 dbSNP
rs934178621 632 dbSNP
rs1477127582 636 dbSNP
rs757251570 637 dbSNP
rs1003618767 639 dbSNP
rs559665746 640 dbSNP
rs906649015 642 dbSNP
rs967137521 647 dbSNP
rs1026148015 648 dbSNP
rs1422140287 654 dbSNP
rs990231010 670 dbSNP
rs1163893201 671 dbSNP
rs1187743281 672 dbSNP
rs752879133 673 dbSNP
rs1175799729 678 dbSNP
rs1480601045 683 dbSNP
rs1233897361 690 dbSNP
rs1236495630 692 dbSNP
rs767715703 706 dbSNP
rs1201560417 708 dbSNP
rs1034719203 712 dbSNP
rs113281582 714 dbSNP
rs1323691680 727 dbSNP
rs979940580 729 dbSNP
rs371804650 740 dbSNP
rs1390544189 741 dbSNP
rs899000284 750 dbSNP
rs759591694 759 dbSNP
rs1462434307 762 dbSNP
rs1364463736 764 dbSNP
rs1024104014 798 dbSNP
rs994186606 799 dbSNP
rs543808843 804 dbSNP
rs943299583 819 dbSNP
rs888763093 823 dbSNP
rs181762063 824 dbSNP
rs1185041785 829 dbSNP
rs1006007419 831 dbSNP
rs116804229 841 dbSNP
rs1050460957 853 dbSNP
rs924326446 854 dbSNP
rs934245255 860 dbSNP
rs558635067 868 dbSNP
rs1238593249 883 dbSNP
rs977582198 884 dbSNP
rs1378742222 896 dbSNP
rs1282580853 897 dbSNP
rs1454925015 909 dbSNP
rs577990160 914 dbSNP
rs77523386 915 dbSNP
rs915416011 920 dbSNP
rs989732593 922 dbSNP
rs1464568383 927 dbSNP
rs1382134362 932 dbSNP
rs35568459 938 dbSNP
rs1287985383 940 dbSNP
rs959641906 949 dbSNP
rs1453980364 950 dbSNP
rs1033673657 962 dbSNP
rs982146761 968 dbSNP
rs1356757917 973 dbSNP
rs1161780014 982 dbSNP
rs970718353 1012 dbSNP
rs1479757326 1016 dbSNP
rs1429127876 1022 dbSNP
rs1200234703 1023 dbSNP
rs1042581701 1028 dbSNP
rs1259723843 1029 dbSNP
rs945744857 1035 dbSNP
rs1171945649 1056 dbSNP
rs575827314 1062 dbSNP
rs768058551 1063 dbSNP
rs1412626353 1075 dbSNP
rs1181441911 1076 dbSNP
rs142731883 1077 dbSNP
rs1026365225 1079 dbSNP
rs1324224427 1081 dbSNP
rs190044881 1081 dbSNP
rs963218829 1085 dbSNP
rs1382467885 1087 dbSNP
rs375056710 1089 dbSNP
rs935688228 1093 dbSNP
rs1322980318 1095 dbSNP
rs1016535056 1096 dbSNP
rs185577472 1103 dbSNP
rs980396367 1104 dbSNP
rs1468008032 1105 dbSNP
rs1371447580 1112 dbSNP
rs1192509882 1113 dbSNP
rs1479634025 1122 dbSNP
rs1429359278 1123 dbSNP
rs1252947971 1124 dbSNP
rs971303567 1126 dbSNP
rs368394490 1127 dbSNP
rs1337326167 1129 dbSNP
rs1460750737 1129 dbSNP
rs3043318 1129 dbSNP
rs397795458 1129 dbSNP
rs5773414 1129 dbSNP
rs748707317 1129 dbSNP
rs759032621 1129 dbSNP
rs1250295271 1131 dbSNP
rs866978630 1131 dbSNP
rs1051635548 1132 dbSNP
rs1312545511 1132 dbSNP
rs1382561760 1133 dbSNP
rs997105738 1135 dbSNP
rs961441943 1136 dbSNP
rs1017459488 1137 dbSNP
rs565848857 1138 dbSNP
rs1167421076 1155 dbSNP
rs889757025 1156 dbSNP
rs1392088796 1160 dbSNP
rs1441287722 1163 dbSNP
rs1041443476 1172 dbSNP
rs1028344871 1184 dbSNP
rs998399401 1185 dbSNP
rs901433227 1189 dbSNP
rs145688443 1200 dbSNP
rs1436026635 1209 dbSNP
rs1444978512 1212 dbSNP
rs1376194726 1214 dbSNP
rs111259843 1225 dbSNP
rs1054398895 1226 dbSNP
rs945565587 1233 dbSNP
rs571307607 1234 dbSNP
rs1285180706 1239 dbSNP
rs1247366468 1240 dbSNP
rs1334349114 1253 dbSNP
rs758637416 1257 dbSNP
rs926821131 1268 dbSNP
rs982365873 1277 dbSNP
rs1372533889 1278 dbSNP
rs891524501 1281 dbSNP
rs970685662 1284 dbSNP
rs1054641115 1291 dbSNP
rs935776247 1304 dbSNP
rs1468466961 1310 dbSNP
rs1385425441 1311 dbSNP
rs1362992412 1314 dbSNP
rs919269577 1316 dbSNP
rs549902313 1325 dbSNP
rs1483975328 1326 dbSNP
rs1266187522 1334 dbSNP
rs1417019646 1337 dbSNP
rs1252579172 1346 dbSNP
rs1177782330 1347 dbSNP
rs963823797 1352 dbSNP
rs1016089871 1356 dbSNP
rs1221703900 1358 dbSNP
rs1488111806 1360 dbSNP
rs1279307601 1369 dbSNP
rs572662424 1379 dbSNP
rs531463811 1380 dbSNP
rs949965194 1383 dbSNP
rs766577710 1384 dbSNP
rs972522852 1388 dbSNP
rs1350534141 1404 dbSNP
rs1325839357 1420 dbSNP
rs1399151212 1425 dbSNP
rs961224571 1426 dbSNP
rs748778919 1427 dbSNP
rs1285521582 1429 dbSNP
rs1473543775 1438 dbSNP
rs570247896 1439 dbSNP
rs1030176885 1444 dbSNP
rs1319034842 1453 dbSNP
rs984589830 1470 dbSNP
rs1247925308 1477 dbSNP
rs997406841 1478 dbSNP
rs902840837 1490 dbSNP
rs998220847 1491 dbSNP
rs1300778413 1492 dbSNP
rs965615999 1494 dbSNP
rs1223416809 1501 dbSNP
rs1406191384 1504 dbSNP
rs111882266 1506 dbSNP
rs1365819751 1507 dbSNP
rs548514945 1512 dbSNP
rs1326023706 1518 dbSNP
rs1021239297 1520 dbSNP
rs1461394033 1525 dbSNP
rs530392372 1532 dbSNP
rs1458557836 1536 dbSNP
rs1009724682 1539 dbSNP
rs752661947 1539 dbSNP
rs1175681741 1544 dbSNP
rs1011319173 1548 dbSNP
rs892917580 1549 dbSNP
rs1055549484 1550 dbSNP
rs559797823 1551 dbSNP
rs926788491 1552 dbSNP
rs1190112408 1553 dbSNP
rs1046657809 1560 dbSNP
rs1201715380 1571 dbSNP
rs1490517680 1572 dbSNP
rs1261630606 1574 dbSNP
rs1210078577 1575 dbSNP
rs1313254726 1582 dbSNP
rs893935454 1583 dbSNP
rs541194099 1604 dbSNP
rs1341728838 1606 dbSNP
rs1262749668 1607 dbSNP
rs1437520708 1610 dbSNP
rs949639862 1613 dbSNP
rs1380359159 1614 dbSNP
rs1203671306 1619 dbSNP
rs919251312 1620 dbSNP
rs1448699511 1627 dbSNP
rs1360771109 1630 dbSNP
rs140631486 1639 dbSNP
rs1408935720 1648 dbSNP
rs1390243845 1665 dbSNP
rs1170143049 1668 dbSNP
rs532363142 1670 dbSNP
rs564984889 1671 dbSNP
rs909255618 1674 dbSNP
rs986192864 1691 dbSNP
rs1483871850 1693 dbSNP
rs543487183 1707 dbSNP
rs1232937555 1716 dbSNP
rs953191477 1740 dbSNP
rs1203029278 1742 dbSNP
rs905618462 1745 dbSNP
rs1044039281 1767 dbSNP
rs188127407 1770 dbSNP
rs1030145840 1771 dbSNP
rs183750972 1773 dbSNP
rs975960733 1778 dbSNP
rs572288411 1779 dbSNP
rs1224819587 1785 dbSNP
rs148235213 1797 dbSNP
rs1228610744 1798 dbSNP
rs1019947514 1816 dbSNP
rs1011618408 1817 dbSNP
rs892810442 1820 dbSNP
rs1370675380 1824 dbSNP
rs1034482626 1832 dbSNP
rs909669476 1834 dbSNP
rs1384157190 1839 dbSNP
rs113493067 1841 dbSNP
rs1164522787 1842 dbSNP
rs1431743975 1845 dbSNP
rs983978447 1857 dbSNP
rs1176026764 1860 dbSNP
rs1289265749 1864 dbSNP
rs954263648 1870 dbSNP
rs921397330 1879 dbSNP
rs1001301838 1889 dbSNP
rs1489923148 1890 dbSNP
rs1265153208 1896 dbSNP
rs1222574007 1902 dbSNP
rs905342662 1903 dbSNP
rs1323339657 1904 dbSNP
rs1403837922 1907 dbSNP
rs1046629089 1921 dbSNP
rs965398439 1930 dbSNP
rs949607582 1936 dbSNP
rs1289690748 1938 dbSNP
rs898110705 1950 dbSNP
rs572265503 1952 dbSNP
rs1389381433 1955 dbSNP
rs1293811302 1963 dbSNP
rs1020978832 1967 dbSNP
rs553775170 1969 dbSNP
rs1352015646 1977 dbSNP
rs1157314209 1978 dbSNP
rs763279387 1980 dbSNP
rs1480720857 1989 dbSNP
rs1472559694 1990 dbSNP
rs1413258231 1993 dbSNP
rs1036624619 1996 dbSNP
rs538984369 1997 dbSNP
rs1423069810 2005 dbSNP
rs1009797957 2007 dbSNP
rs1489563320 2015 dbSNP
rs577693078 2020 dbSNP
rs941998609 2031 dbSNP
rs1191071590 2034 dbSNP
rs909233253 2037 dbSNP
rs1032887208 2040 dbSNP
rs1262631392 2046 dbSNP
rs1002417599 2055 dbSNP
rs555555519 2056 dbSNP
rs1388175089 2065 dbSNP
rs986161501 2068 dbSNP
rs2794599 2075 dbSNP
rs1389829209 2079 dbSNP
rs1013974665 2080 dbSNP
rs10798959 2099 dbSNP
rs1176815980 2100 dbSNP
rs1435138980 2102 dbSNP
rs1259830998 2107 dbSNP
rs745775177 2116 dbSNP
rs1269122293 2117 dbSNP
rs1249639225 2122 dbSNP
rs975929488 2127 dbSNP
rs1344156080 2135 dbSNP
rs967241742 2140 dbSNP
rs191612911 2141 dbSNP
rs1296493125 2145 dbSNP
rs1451656477 2145 dbSNP
rs1366430381 2148 dbSNP
rs990095655 2154 dbSNP
rs10914738 2158 dbSNP
rs536454874 2160 dbSNP
rs1338428793 2162 dbSNP
rs1034037281 2163 dbSNP
rs12025461 2165 dbSNP
rs1173236652 2177 dbSNP
rs932524548 2182 dbSNP
rs1388386205 2201 dbSNP
rs1168249226 2207 dbSNP
rs1001271088 2210 dbSNP
rs1391807710 2211 dbSNP
rs1181462680 2236 dbSNP
rs906985073 2240 dbSNP
rs1025143873 2247 dbSNP
rs768058385 2252 dbSNP
rs1273246804 2253 dbSNP
rs898008057 2254 dbSNP
rs1463535147 2260 dbSNP
rs1228730577 2261 dbSNP
rs1343789507 2262 dbSNP
rs1300279278 2266 dbSNP
rs976803681 2271 dbSNP
rs1373859095 2273 dbSNP
rs555659737 2280 dbSNP
rs942323178 2281 dbSNP
rs1398280664 2283 dbSNP
rs867934305 2289 dbSNP
rs1368834900 2293 dbSNP
rs1442992342 2294 dbSNP
rs539406571 2299 dbSNP
rs988164254 2306 dbSNP
rs958522537 2309 dbSNP
rs1184560170 2317 dbSNP
rs903217 2322 dbSNP
rs143131468 2323 dbSNP
rs1189582925 2325 dbSNP
rs1193587677 2326 dbSNP
rs976143609 2343 dbSNP
rs1250447217 2344 dbSNP
rs1251380012 2353 dbSNP
rs1244867008 2357 dbSNP
rs74066623 2366 dbSNP
rs1013921134 2367 dbSNP
rs563242870 2367 dbSNP
rs1356152199 2369 dbSNP
rs1285124036 2373 dbSNP
rs913082565 2374 dbSNP
rs1247665029 2376 dbSNP
rs1453036050 2379 dbSNP
rs1349108646 2392 dbSNP
rs1335107711 2397 dbSNP
rs547456570 2403 dbSNP
rs745716668 2411 dbSNP
rs957338502 2419 dbSNP
rs371680419 2423 dbSNP
rs926937219 2424 dbSNP
rs1397370658 2427 dbSNP
rs979804014 2428 dbSNP
rs370577143 2431 dbSNP
rs1387275102 2434 dbSNP
rs1024033032 2435 dbSNP
rs1244455424 2449 dbSNP
rs993950519 2453 dbSNP
rs764308074 2454 dbSNP
rs888342566 2458 dbSNP
rs1211935517 2462 dbSNP
rs1438887594 2463 dbSNP
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Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HEK293S
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in GSM1084069. RNA binding protein: AGO2. Condition:CLIP_emetine_SigmaAb ...

- Karginov FV; Hannon GJ, 2013, Genes & development.

Article - Karginov FV; Hannon GJ
- Genes & development, 2013
When adapting to environmental stress, cells attenuate and reprogram their translational output. In part, these altered translation profiles are established through changes in the interactions between RNA-binding proteins and mRNAs. The Argonaute 2 (Ago2)/microRNA (miRNA) machinery has been shown to participate in stress-induced translational up-regulation of a particular mRNA, CAT-1; however, a detailed, transcriptome-wide understanding of the involvement of Ago2 in the process has been lacking. Here, we profiled the overall changes in Ago2-mRNA interactions upon arsenite stress by cross-linking immunoprecipitation (CLIP) followed by high-throughput sequencing (CLIP-seq). Ago2 displayed a significant remodeling of its transcript occupancy, with the majority of 3' untranslated region (UTR) and coding sequence (CDS) sites exhibiting stronger interaction. Interestingly, target sites that were destined for release from Ago2 upon stress were depleted in miRNA complementarity signatures, suggesting an alternative mode of interaction. To compare the changes in Ago2-binding patterns across transcripts with changes in their translational states, we measured mRNA profiles on ribosome/polysome gradients by RNA sequencing (RNA-seq). Increased Ago2 occupancy correlated with stronger repression of translation for those mRNAs, as evidenced by a shift toward lighter gradient fractions upon stress, while release of Ago2 was associated with the limited number of transcripts that remained translated. Taken together, these data point to a role for Ago2 and the mammalian miRNAs in mediating the translational component of the stress response.
LinkOut: [PMID: 23824327]
CLIP-seq Support 1 for dataset GSM1084069
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_emetine_SigmaAb
Location of target site ENST00000373381.4 | 3UTR | AUCUGUGUGUGUGUGUGUGUGUAUGG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
62 hsa-miR-4650-5p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT064263 KIAA1804 mitogen-activated protein kinase kinase kinase 21 2 2
MIRT082508 CALM3 calmodulin 3 2 10
MIRT456061 SLC25A28 solute carrier family 25 member 28 2 2
MIRT463521 ZBTB7B zinc finger and BTB domain containing 7B 2 2
MIRT465449 TP53 tumor protein p53 2 2
MIRT469517 RBFOX2 RNA binding protein, fox-1 homolog 2 2 8
MIRT470967 PKM pyruvate kinase, muscle 2 2
MIRT471902 NUAK2 NUAK family kinase 2 2 2
MIRT479924 CBX5 chromobox 5 2 2
MIRT483045 C15orf52 chromosome 15 open reading frame 52 2 13
MIRT493184 MKNK2 MAP kinase interacting serine/threonine kinase 2 2 2
MIRT496615 IKZF2 IKAROS family zinc finger 2 2 2
MIRT496980 DNAJC27 DnaJ heat shock protein family (Hsp40) member C27 2 2
MIRT522489 MFSD9 major facilitator superfamily domain containing 9 2 2
MIRT527859 SMOC1 SPARC related modular calcium binding 1 2 2
MIRT528540 TTC22 tetratricopeptide repeat domain 22 2 2
MIRT528860 PKP1 plakophilin 1 2 2
MIRT529389 NSFL1C NSFL1 cofactor 2 2
MIRT533523 TRIM13 tripartite motif containing 13 2 2
MIRT538056 DNAH3 dynein axonemal heavy chain 3 2 2
MIRT541480 ARF3 ADP ribosylation factor 3 2 6
MIRT576737 Wars tryptophanyl-tRNA synthetase 2 2
MIRT610462 SYNPO2L synaptopodin 2 like 2 4
MIRT614189 GGT7 gamma-glutamyltransferase 7 2 2
MIRT626341 PCSK7 proprotein convertase subtilisin/kexin type 7 2 2
MIRT627547 SNIP1 Smad nuclear interacting protein 1 2 2
MIRT628605 TMEM251 transmembrane protein 251 2 2
MIRT630827 YTHDC1 YTH domain containing 1 2 4
MIRT633419 TMEM120B transmembrane protein 120B 2 2
MIRT635354 CSMD2 CUB and Sushi multiple domains 2 2 2
MIRT636418 MTHFD2 methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase 2 2
MIRT637031 SPTLC3 serine palmitoyltransferase long chain base subunit 3 2 2
MIRT638032 TMEM109 transmembrane protein 109 2 2
MIRT642847 ZBTB7C zinc finger and BTB domain containing 7C 2 2
MIRT644389 CD59 CD59 molecule (CD59 blood group) 2 2
MIRT645167 NOL9 nucleolar protein 9 2 2
MIRT645601 MRPS15 mitochondrial ribosomal protein S15 2 2
MIRT649169 IQSEC1 IQ motif and Sec7 domain 1 2 2
MIRT659166 DCTN5 dynactin subunit 5 2 4
MIRT660814 AHCY adenosylhomocysteinase 2 2
MIRT663640 HM13 histocompatibility minor 13 2 2
MIRT663848 TRIM72 tripartite motif containing 72 2 2
MIRT666535 RNF157 ring finger protein 157 2 2
MIRT667885 IP6K1 inositol hexakisphosphate kinase 1 2 2
MIRT671613 C6orf25 megakaryocyte and platelet inhibitory receptor G6b 2 2
MIRT673800 MALL mal, T-cell differentiation protein like 2 2
MIRT676281 ZNF260 zinc finger protein 260 2 2
MIRT687008 RPL35 ribosomal protein L35 2 2
MIRT689090 ACVR1 activin A receptor type 1 2 2
MIRT689259 WDR83OS WD repeat domain 83 opposite strand 2 2
MIRT697458 ZC3H4 zinc finger CCCH-type containing 4 2 2
MIRT699223 SLCO3A1 solute carrier organic anion transporter family member 3A1 2 2
MIRT710222 JMJD4 jumonji domain containing 4 2 2
MIRT710935 ING5 inhibitor of growth family member 5 2 2
MIRT715830 ZNF598 zinc finger protein 598 2 2
MIRT716134 THOC5 THO complex 5 2 2
MIRT717518 HRNR hornerin 2 2
MIRT717918 LRRC15 leucine rich repeat containing 15 2 2
MIRT718307 XPOT exportin for tRNA 2 2
MIRT721350 LIF LIF, interleukin 6 family cytokine 2 2
MIRT724503 MSMO1 methylsterol monooxygenase 1 2 2
MIRT724993 FSTL3 follistatin like 3 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-4650 Gemcitabine 60750 NSC613327 approved resistant Low Pancreatic Cancer cell line (SW1990)
hsa-miR-4650 Gemcitabine 60750 NSC613327 approved sensitive High Pancreatic Cancer cell line (SW1990)
hsa-miR-4650-5p Gemcitabine 60750 NSC613327 approved resistant High Pancreatic Cancer cell line (SW1990)
hsa-miR-4650-5p Tripterygium wilfordii Hook F resistant tissue

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