miRTarBase - #MIRT636011


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pre-miRNA Information
pre-miRNA hsa-mir-3152   
Genomic Coordinates chr9: 18573306 - 18573379
Description Homo sapiens miR-3152 stem-loop
Comment Berezikov et al. proposed this sequence as a miRNA candidate based on the RAKE method .
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-3152-5p
Sequence 11| AUUGCCUCUGUUCUAACACAAG |32
Evidence Experimental
Experiments Illumina
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1019691326 2 dbSNP
rs1282676806 8 dbSNP
rs762305650 11 dbSNP
rs1364318615 12 dbSNP
rs556364307 18 dbSNP
rs1002755159 19 dbSNP
rs1238555909 21 dbSNP
Putative Targets

miRNA Expression profile
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol GNPNAT1   
Synonyms GNA1, GNPNAT, Gpnat1
Description glucosamine-phosphate N-acetyltransferase 1
Transcript NM_198066   
Expression
Putative miRNA Targets on GNPNAT1
3'UTR of GNPNAT1
(miRNA target sites are highlighted)		 
>GNPNAT1|NM_198066|3'UTR
   1 AAATCTTGTAAGAAAATTGTCAAAGGGGCTAATGCTACAAGGCTACACTCTTCCTAGAGTTGAAATATTTTGTTGCTGCA
  81 GCCGAGTGACCTCCATAAATACTGGACTGAAAAAACATTGTAATACTACAAGTATAATGACATTTAGAAGATTACTTTGG
 161 GCTGGTGGGACATGCTGTGAATTTAGATTACAAATGAATATTATAAAGGGGATGATTTTTAACCAAAGGAATATATTTTT
 241 AACTTGAATCTTTTCTTGCATTGTATTTTTCTAAAAGTTTGGCTTCCTTTCTTGGTAGTCAAGAGTATGGGTAATAAGGA
 321 GTTATATGTCTGCTATCTGTGTTGCTCATTTAAAAAAAGTATACATTGAATAAGGCTGTTTATCACATGCATAAAATTAA
 401 ATATTTTTGTTTCAAAGAAACATCTCAATACACTTAGGGGTGTATTGTTTCCCACATATTAAGTCAGGGTGGATAAATTA
 481 GTTATTATAACTAAACATAGTATAGTCCAACATTCGTTGATCCCAATACAGGCAAACAACCTGGTCAACCTTTTGAAGTA
 561 GAAGAAATGAAAATTACTTGACAAGATTAAAAGTAAAACAATTTAAATGTTTTACTGAAAGTTTATATAGTATAGTCTAT
 641 GTAGATAAAAAGTACCACTTGTCTTTTCTGTGAATTATGACTATTCATTTGTTAAAAATACCTAAGAGCAATTATAGTGG
 721 GACATCTAAGGTCCTCTGTAAACAGTGAATTAGCAAACCTCAGCCTATGTGTTTCTACCCTGATTTTTTTCTTTTCATGG
 801 GTATCTGAAGCCTCTAAGTTTTTTCAAAAATGGAGTATCACAAAATTGAGTGAAACACAATACTTAATGTATTGTACTAG
 881 ATTGCCAAATTCATAAAATGTTAATGGAAGCTTTTTGATGTGATTATAATGGCACTATTCTGGTCATTATCCTATTTTGA
 961 TTTTATTTAATTTTTTAAAGTTGAAGAATTAAATATTTTAATGGTTCTAATCTTTTGCATTCCATGTTGCATTAAACCTG
1041 TTTATATGAGTAGTCTTCTGTTAGAATCACATCTGTGCTTTTCTTGAGTCTGCTGTTGAACTATTAGATTAAGTCATAAT
1121 TCATAAAATTTTAGTTTAATGTGCTCTTTGTAAAATGAAATTGTAAAGAAAATACCAGTGTTTCTCATCCCATTGACTCA
1201 CACCACGTCATCTGGATTTTGGATTTCCCTCCATGCAGCCAGCTATAGTTGGCTTTCCAAAACAACAGAAATCCTTCACC
1281 AATAGAGTGCACTACTTACCTGCTTATAGCCTATACAGACGAACTGATCTGTCCTTCGTGAAACGCAACAAAGCTAGTTC
1361 TGTCTTTTCAGAAGTCCTACAACCTTGACAAAGAGTAGTTTTATCAGGTAAATCCTGGTAATTAAAAACGCATGTTTTTA
1441 AAAATTAGCCTGGTAAGGCCGGGTGCAGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCTGAGGTGGGCAGATCAC
1521 AAGGTCAGGAGTTTGAGACCAGCCTGACCAAAATGGTGAAACCCTGTCTCTACTAAAAAAAAGAAAAATTAGCCAGACGT
1601 GGTGGCATGCGCCTGTAATCCCAGCTACTCAGGAAGCTGAGGCGAGAGAATCGCTTGAACCCGGGAGGCAAAGGTTGCAG
1681 TGAGCTGAGATCACACCACTGCACTCCAGCCTGGCGACAGAGAGAGACTCCATCTCAAAACAAAACAAAAAAAATTAGCC
1761 TACTTAAAGGCACAACTAAATGCTTTATTACCTTTCTTACCACTGAACAATTTGAGGTAAAATCATTCACAAGGTTGGCA
1841 CTTCAGTAAATCCCTTTAAATAGTGTTCCTAAGATATCTCTTAAATCCTCCCATAGGAAATAGAATTACAGGTAAGGTAC
1921 ACCATACAAAAATTGTGTCATTGAGGACAATGGTGATCTGTAATTTTAGTTGAGTATGTTTATGATTTTTGAAGCCATAT
2001 GGTGAGTAAATGTAAATATGAAAAAAGTGCTACATAAAACACTTCTTAAACTTTTTTTTTTTAAAAACTGCTCCTTGTGG
2081 AGCAGGACTACCCCATAGGCAGTGTACCCACAATAGATAGCCTTTTGTTGTTGTTGTTGTTGAGACAAGGTCTCGCTGTT
2161 GCCCAGGCTAGAGCGCAGGGGCACAATCACCACACACTGCCGCTTCAATCTCCTGGGCTCAAATGATCCTTCCACCTCAG
2241 CCTCCCATGTGGCTGGGACTATAGGTGCATGCCACCACACCCAGCTAATTAAAAAAATTTTTTGTGTGGAGTCTATGTTG
2321 CCCAGGCTGGTCTCTTAACTCCTAGGCTCAAGTGATCCTCCCACCTCAGCCTCCCAAAGTGCTTGGATGACAGGTGCGAG
2401 CCACTGCACCTGGCCCACATTTTTTAAAGAGACACTGTCCCACTCCATCACCCAGGCTGGAGTCCAGTGGTGTGATCATA
2481 GCTCACTGCATCCTCCAGTTCCTGGGTTCAAGCCATCCCTCCTGCCTCAGCCTCCCCAGTAGCTGGAACTACAGGTGTGT
2561 GCCATCACACCTGGCTTTACATTTTTCTGTGGGGTCTTACTATATTGCCCAAGCCGGTCTCAAACTCCTGAGCTCAAGTG
2641 ATCCTCTGCCTCAGCCTCCAGAGTATCTGGGATTACATATGTCGGCTACCGTGTCTGGCCGTTCACATCTTTGGCCACTA
2721 TTTGCTTGTGAAAAGGTATAATGAGGTGGTACTTATCATTTTTACTGTGTCTCATGTTTTGTATATTTTTGTTTCATCAA
2801 CTAAGATGCACTGTAACATCTCTGAAATCTGGATATATTATCAATGGTTTATCATAGTTTTGTTAGCAATACACTGTCTT
2881 TTAGTGGTGCCTAAAATAATGGTATAGTTGTGAGGTGATCTTAGATTTGATGAAGCACAGTATGCAGGTAGGCCTAATGG
2961 GGGAAGATGGTAATATAAAAGCAAGAAGTATTTTTTTTTTGTAATGACTGAAAGCTGTTCTGTGGATGACCTACCCTTTC
3041 CTTTAAACACGATTCTCTCACTTCCAACTCCAAACTTGCTCAACTAATCCTTAAAAATAAACTTGAGCTGGAATTTGAAA
3121 AAAAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' gaacaCAAUCUUG---UCUCCGUUa 5'
               | | ||||   :||||||| 
Target 5' gaatcGCTTGAACCCGGGAGGCAAa 3'
 1648 - 1672 153.00 -11.00
2 
miRNA  3' gaACACAAU-----CUUGU----CUCCGUUa 5'
            | | |||     |||||    ||||:|| 
Target 5' ccTTTCTTACCACTGAACAATTTGAGGTAAa 3'
 1791 - 1821 138.00 -10.60
3 
miRNA  3' gaacacAAUC--UUGUCUCCGUUa 5'
                | ||  |:| |||||:| 
Target 5' agctacTCAGGAAGCTGAGGCGAg 3'
 1623 - 1646 134.00 -11.60
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN30522417 5 COSMIC
COSN30123862 6 COSMIC
COSN31527221 17 COSMIC
COSN31552589 76 COSMIC
COSN30151424 93 COSMIC
COSN30172806 103 COSMIC
COSN30132815 109 COSMIC
COSN25351075 137 COSMIC
COSN31570440 154 COSMIC
COSN24950032 183 COSMIC
COSN30538597 256 COSMIC
COSN30529352 263 COSMIC
COSN8844715 380 COSMIC
COSN5749494 488 COSMIC
COSN1168850 555 COSMIC
COSN21595135 604 COSMIC
COSN1653705 617 COSMIC
COSN1653703 966 COSMIC
COSN26556538 1078 COSMIC
COSN31568898 1100 COSMIC
COSN15182922 1334 COSMIC
COSN25343638 1482 COSMIC
COSN21163809 1490 COSMIC
COSN6253564 1651 COSMIC
COSN25343637 1937 COSMIC
COSN16474490 2018 COSMIC
COSN27578574 2051 COSMIC
COSN27513983 2052 COSMIC
COSN17615981 2062 COSMIC
COSN20688833 2557 COSMIC
COSN15028802 2935 COSMIC
COSN27392398 2991 COSMIC
COSN26029345 3008 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs753232829 2 dbSNP
rs146101267 4 dbSNP
rs558825514 8 dbSNP
rs1157386507 11 dbSNP
rs962686336 13 dbSNP
rs909851578 17 dbSNP
rs1338920553 18 dbSNP
rs766647640 20 dbSNP
rs763237685 22 dbSNP
rs1202146198 28 dbSNP
rs1210519557 28 dbSNP
rs1292186536 30 dbSNP
rs750675105 37 dbSNP
rs762073059 38 dbSNP
rs374647805 43 dbSNP
rs1264475866 46 dbSNP
rs760430389 48 dbSNP
rs1442543447 50 dbSNP
rs775369402 51 dbSNP
rs575045177 54 dbSNP
rs1421025788 56 dbSNP
rs1474916870 58 dbSNP
rs745995419 60 dbSNP
rs1163468524 64 dbSNP
rs1351297847 72 dbSNP
rs1403066211 75 dbSNP
rs1475110493 77 dbSNP
rs1302511385 80 dbSNP
rs1305318685 84 dbSNP
rs1035495720 115 dbSNP
rs1003743752 116 dbSNP
rs1245860600 117 dbSNP
rs142292736 118 dbSNP
rs1354365467 120 dbSNP
rs1245273701 125 dbSNP
rs1298664050 132 dbSNP
rs1489517993 133 dbSNP
rs1023909748 151 dbSNP
rs768132355 157 dbSNP
rs1443334156 163 dbSNP
rs1187866559 173 dbSNP
rs1443006091 187 dbSNP
rs1238806621 190 dbSNP
rs757816405 198 dbSNP
rs1471538064 203 dbSNP
rs1162317634 205 dbSNP
rs1011125205 210 dbSNP
rs893486210 221 dbSNP
rs1156742274 226 dbSNP
rs1384018346 231 dbSNP
rs1419599180 233 dbSNP
rs1052136447 243 dbSNP
rs1359106427 250 dbSNP
rs1310163022 260 dbSNP
rs1175906655 277 dbSNP
rs1238672774 280 dbSNP
rs999190882 285 dbSNP
rs1478529567 294 dbSNP
rs890237242 305 dbSNP
rs1202495637 309 dbSNP
rs532220261 320 dbSNP
rs1459653086 325 dbSNP
rs931850462 329 dbSNP
rs1196977646 333 dbSNP
rs921720752 335 dbSNP
rs1179611238 338 dbSNP
rs1363106155 342 dbSNP
rs1430404630 343 dbSNP
rs1262492073 345 dbSNP
rs1174043334 349 dbSNP
rs1399791696 352 dbSNP
rs1192905888 354 dbSNP
rs1037587776 359 dbSNP
rs1487265245 364 dbSNP
rs1332272318 370 dbSNP
rs1379261618 389 dbSNP
rs75236386 392 dbSNP
rs1306944489 400 dbSNP
rs746631189 402 dbSNP
rs1211348228 407 dbSNP
rs746530511 417 dbSNP
rs1332126173 421 dbSNP
rs1235898368 424 dbSNP
rs1254700140 428 dbSNP
rs1323263284 433 dbSNP
rs1202680453 437 dbSNP
rs1258255907 456 dbSNP
rs779492416 468 dbSNP
rs1249736415 472 dbSNP
rs1433767562 480 dbSNP
rs1253910783 489 dbSNP
rs907793537 500 dbSNP
rs1479970381 503 dbSNP
rs1229091890 513 dbSNP
rs1402667425 516 dbSNP
rs187775621 522 dbSNP
rs182164147 526 dbSNP
rs1297618222 527 dbSNP
rs951370389 529 dbSNP
rs928083823 540 dbSNP
rs1299775786 553 dbSNP
rs757912655 561 dbSNP
rs754238291 568 dbSNP
rs1345305992 587 dbSNP
rs1219576871 589 dbSNP
rs190304635 606 dbSNP
rs559869004 607 dbSNP
rs969587239 612 dbSNP
rs1250329094 617 dbSNP
rs376717114 618 dbSNP
rs1315279606 627 dbSNP
rs1415435765 632 dbSNP
rs989640639 638 dbSNP
rs745848702 657 dbSNP
rs377611458 658 dbSNP
rs1490132157 661 dbSNP
rs764647321 664 dbSNP
rs1194045572 678 dbSNP
rs1426058670 679 dbSNP
rs756538031 681 dbSNP
rs551239816 684 dbSNP
rs1427032929 691 dbSNP
rs1169996811 694 dbSNP
rs1369180901 710 dbSNP
rs958318366 720 dbSNP
rs1031242348 726 dbSNP
rs1301856224 727 dbSNP
rs531246546 729 dbSNP
rs1171087320 733 dbSNP
rs1463693500 738 dbSNP
rs1424505648 742 dbSNP
rs999202226 743 dbSNP
rs1294370260 747 dbSNP
rs1476847966 768 dbSNP
rs1246293238 769 dbSNP
rs3945721 775 dbSNP
rs568832173 777 dbSNP
rs890092249 780 dbSNP
rs1030083148 782 dbSNP
rs1265143527 802 dbSNP
rs1484760438 810 dbSNP
rs879113717 811 dbSNP
rs996293501 812 dbSNP
rs1253786643 814 dbSNP
rs1425646555 816 dbSNP
rs371731438 816 dbSNP
rs1161675450 818 dbSNP
rs1384680443 818 dbSNP
rs116729260 819 dbSNP
rs1343843281 821 dbSNP
rs1430411802 825 dbSNP
rs3193498 833 dbSNP
rs941849361 840 dbSNP
rs1203528506 841 dbSNP
rs1256968824 846 dbSNP
rs1397277105 849 dbSNP
rs1312366891 850 dbSNP
rs1216263841 865 dbSNP
rs1381390076 867 dbSNP
rs1240853330 868 dbSNP
rs56063423 872 dbSNP
rs185534822 892 dbSNP
rs367804416 893 dbSNP
rs1484396641 894 dbSNP
rs1295681213 899 dbSNP
rs1449371376 900 dbSNP
rs1242661813 908 dbSNP
rs142258148 915 dbSNP
rs1047608676 924 dbSNP
rs1406363788 926 dbSNP
rs559933194 943 dbSNP
rs1400506835 945 dbSNP
rs183042999 947 dbSNP
rs1361257048 961 dbSNP
rs1470787019 964 dbSNP
rs1334264303 965 dbSNP
rs1381463047 969 dbSNP
rs1332603492 971 dbSNP
rs575196041 977 dbSNP
rs982227417 985 dbSNP
rs1401317459 990 dbSNP
rs1371002753 993 dbSNP
rs757147438 1003 dbSNP
rs1223139282 1015 dbSNP
rs1170153939 1017 dbSNP
rs1301787656 1017 dbSNP
rs1313716834 1022 dbSNP
rs1202052144 1024 dbSNP
rs753631116 1031 dbSNP
rs948171352 1032 dbSNP
rs1200544977 1038 dbSNP
rs1458289725 1038 dbSNP
rs1464157568 1045 dbSNP
rs201557986 1048 dbSNP
rs1192271511 1051 dbSNP
rs529818507 1059 dbSNP
rs1479645757 1060 dbSNP
rs1472405971 1066 dbSNP
rs1173857266 1069 dbSNP
rs1404821998 1070 dbSNP
rs1465690756 1075 dbSNP
rs77001619 1085 dbSNP
rs775997558 1086 dbSNP
rs1352243246 1096 dbSNP
rs1183746716 1105 dbSNP
rs1457995738 1107 dbSNP
rs1031273674 1111 dbSNP
rs1347195652 1113 dbSNP
rs373882033 1113 dbSNP
rs954408266 1116 dbSNP
rs1030444299 1123 dbSNP
rs1469459609 1126 dbSNP
rs1271044812 1139 dbSNP
rs1437295668 1139 dbSNP
rs932520054 1143 dbSNP
rs900272690 1144 dbSNP
rs1489964509 1145 dbSNP
rs914501266 1153 dbSNP
rs1199061385 1159 dbSNP
rs1424777771 1173 dbSNP
rs989973911 1178 dbSNP
rs955896784 1179 dbSNP
rs1015953570 1186 dbSNP
rs1006022802 1192 dbSNP
rs924003205 1193 dbSNP
rs978200498 1201 dbSNP
rs575598639 1203 dbSNP
rs1282881571 1206 dbSNP
rs1241629105 1207 dbSNP
rs1302389433 1207 dbSNP
rs970851340 1214 dbSNP
rs1025373909 1216 dbSNP
rs1268610617 1217 dbSNP
rs1338865329 1219 dbSNP
rs1353354945 1229 dbSNP
rs1228918879 1230 dbSNP
rs1207796321 1237 dbSNP
rs1012253074 1245 dbSNP
rs938564703 1247 dbSNP
rs1264405718 1249 dbSNP
rs907112136 1259 dbSNP
rs1046875499 1265 dbSNP
rs1239954780 1282 dbSNP
rs1324274443 1285 dbSNP
rs1474802896 1285 dbSNP
rs191817288 1287 dbSNP
rs755222521 1288 dbSNP
rs948063381 1289 dbSNP
rs916697924 1292 dbSNP
rs1422732245 1296 dbSNP
rs1162829808 1299 dbSNP
rs1402196056 1300 dbSNP
rs1404784313 1307 dbSNP
rs1449021747 1313 dbSNP
rs545182377 1316 dbSNP
rs115160394 1320 dbSNP
rs759137086 1321 dbSNP
rs1245937003 1323 dbSNP
rs1287317184 1325 dbSNP
rs1160188310 1330 dbSNP
rs897355388 1337 dbSNP
rs1037171797 1338 dbSNP
rs372925046 1344 dbSNP
rs1440104071 1345 dbSNP
rs1446125478 1354 dbSNP
rs762992086 1360 dbSNP
rs750962051 1383 dbSNP
rs1442213946 1393 dbSNP
rs1182932650 1400 dbSNP
rs1380793589 1406 dbSNP
rs924070211 1417 dbSNP
rs1176438848 1418 dbSNP
rs765681813 1429 dbSNP
rs1383970566 1430 dbSNP
rs1246842542 1432 dbSNP
rs1220202625 1433 dbSNP
rs1415300286 1433 dbSNP
rs1449306015 1435 dbSNP
rs1288384395 1436 dbSNP
rs1219361928 1447 dbSNP
rs1354926460 1448 dbSNP
rs536878237 1449 dbSNP
rs1238326423 1452 dbSNP
rs1373490338 1454 dbSNP
rs1404032748 1458 dbSNP
rs1275597811 1460 dbSNP
rs1481164436 1461 dbSNP
rs932368022 1465 dbSNP
rs1337991180 1469 dbSNP
rs1237503140 1470 dbSNP
rs1279406993 1472 dbSNP
rs1346112081 1476 dbSNP
rs535403514 1477 dbSNP
rs762175177 1478 dbSNP
rs1459611641 1490 dbSNP
rs1435892222 1502 dbSNP
rs923528346 1509 dbSNP
rs1420882672 1515 dbSNP
rs1348154381 1517 dbSNP
rs776790125 1518 dbSNP
rs567847685 1523 dbSNP
rs1480613831 1532 dbSNP
rs1178891400 1562 dbSNP
rs974842218 1563 dbSNP
rs558451336 1564 dbSNP
rs1156598426 1572 dbSNP
rs1332195594 1575 dbSNP
rs567959134 1583 dbSNP
rs1390206906 1584 dbSNP
rs934468442 1595 dbSNP
rs773940760 1598 dbSNP
rs1425436416 1599 dbSNP
rs1190231949 1605 dbSNP
rs1005887471 1608 dbSNP
rs981317339 1610 dbSNP
rs147604994 1611 dbSNP
rs918018367 1630 dbSNP
rs1222522689 1634 dbSNP
rs187390805 1643 dbSNP
rs368620691 1644 dbSNP
rs1027177769 1649 dbSNP
rs1196513085 1652 dbSNP
rs1249686454 1653 dbSNP
rs538442711 1656 dbSNP
rs568769277 1662 dbSNP
rs961621384 1663 dbSNP
rs552115062 1675 dbSNP
rs1480270660 1688 dbSNP
rs532100084 1692 dbSNP
rs1015673496 1696 dbSNP
rs1008402238 1704 dbSNP
rs890861342 1705 dbSNP
rs1460484200 1714 dbSNP
rs1314271008 1715 dbSNP
rs1391994367 1716 dbSNP
rs1407156354 1718 dbSNP
rs1279636386 1723 dbSNP
rs1345243753 1727 dbSNP
rs1044308730 1728 dbSNP
rs1404008519 1728 dbSNP
rs762964067 1728 dbSNP
rs1012676815 1729 dbSNP
rs1250705609 1732 dbSNP
rs1049534191 1734 dbSNP
rs895106234 1736 dbSNP
rs1365633846 1741 dbSNP
rs1271998923 1746 dbSNP
rs117291444 1751 dbSNP
rs1053878886 1755 dbSNP
rs1187350266 1755 dbSNP
rs1264073334 1757 dbSNP
rs1426814094 1770 dbSNP
rs1339774291 1776 dbSNP
rs936771584 1778 dbSNP
rs1427156896 1779 dbSNP
rs149932355 1782 dbSNP
rs1416424055 1789 dbSNP
rs1054135903 1791 dbSNP
rs1174969807 1799 dbSNP
rs1363564622 1803 dbSNP
rs377066177 1806 dbSNP
rs575821075 1810 dbSNP
rs1170754785 1812 dbSNP
rs1248144176 1815 dbSNP
rs1289441644 1823 dbSNP
rs924526221 1825 dbSNP
rs1358500949 1826 dbSNP
rs555932644 1830 dbSNP
rs1045940988 1835 dbSNP
rs1323026047 1839 dbSNP
rs1477173415 1860 dbSNP
rs1262724784 1862 dbSNP
rs771521019 1874 dbSNP
rs182327943 1877 dbSNP
rs949949689 1887 dbSNP
rs1243880170 1888 dbSNP
rs964349666 1892 dbSNP
rs908848517 1894 dbSNP
rs1385087628 1900 dbSNP
rs561135905 1901 dbSNP
rs1238380443 1903 dbSNP
rs1161807672 1908 dbSNP
rs1209761861 1920 dbSNP
rs535556742 1924 dbSNP
rs1310654918 1925 dbSNP
rs950511459 1944 dbSNP
rs1260175472 1950 dbSNP
rs990946433 1952 dbSNP
rs1312836604 1959 dbSNP
rs544183938 1970 dbSNP
rs1219329822 1973 dbSNP
rs1224257039 1977 dbSNP
rs938002703 1981 dbSNP
rs1317328847 1984 dbSNP
rs1308961663 1985 dbSNP
rs919901210 1995 dbSNP
rs974045077 2002 dbSNP
rs1215365766 2006 dbSNP
rs1026047575 2007 dbSNP
rs1397689973 2011 dbSNP
rs1379668298 2015 dbSNP
rs745329803 2019 dbSNP
rs1242597342 2022 dbSNP
rs1481284780 2026 dbSNP
rs1179431824 2027 dbSNP
rs1406301744 2027 dbSNP
rs1015831998 2028 dbSNP
rs1418813213 2028 dbSNP
rs555899528 2030 dbSNP
rs1429467763 2035 dbSNP
rs1470676550 2040 dbSNP
rs1334183644 2047 dbSNP
rs1012799505 2048 dbSNP
rs971228635 2048 dbSNP
rs1370952801 2050 dbSNP
rs1227488015 2052 dbSNP
rs1284181712 2052 dbSNP
rs987371123 2062 dbSNP
rs1053824642 2063 dbSNP
rs1221907058 2063 dbSNP
rs530795401 2063 dbSNP
rs552986344 2063 dbSNP
rs1028477818 2067 dbSNP
rs1200520804 2068 dbSNP
rs1420811490 2068 dbSNP
rs1042445364 2071 dbSNP
rs1169214582 2073 dbSNP
rs1481249341 2081 dbSNP
rs779009623 2088 dbSNP
rs933503220 2090 dbSNP
rs923425031 2096 dbSNP
rs1415052729 2104 dbSNP
rs1181654970 2107 dbSNP
rs1482442046 2112 dbSNP
rs996580167 2114 dbSNP
rs1303610737 2118 dbSNP
rs1347127584 2121 dbSNP
rs1403390750 2133 dbSNP
rs566904449 2143 dbSNP
rs746193288 2143 dbSNP
rs748793893 2143 dbSNP
rs943658648 2143 dbSNP
rs1342143671 2144 dbSNP
rs892910104 2146 dbSNP
rs1223868357 2151 dbSNP
rs565155839 2152 dbSNP
rs1032640682 2154 dbSNP
rs1196881409 2155 dbSNP
rs998531661 2166 dbSNP
rs1475465491 2171 dbSNP
rs1401991269 2173 dbSNP
rs114097399 2174 dbSNP
rs573256914 2175 dbSNP
rs1140039 2180 dbSNP
rs894340240 2181 dbSNP
rs1056050050 2182 dbSNP
rs1164108040 2183 dbSNP
rs140349712 2185 dbSNP
rs1367234532 2186 dbSNP
rs1322239480 2189 dbSNP
rs189294705 2193 dbSNP
rs1160599992 2194 dbSNP
rs1323143893 2197 dbSNP
rs938056555 2201 dbSNP
rs777488860 2214 dbSNP
rs1433134310 2216 dbSNP
rs1268558268 2223 dbSNP
rs974033439 2228 dbSNP
rs1226432494 2232 dbSNP
rs1317732249 2241 dbSNP
rs940049766 2242 dbSNP
rs908785071 2245 dbSNP
rs1309599580 2248 dbSNP
rs7147149 2250 dbSNP
rs1447289098 2256 dbSNP
rs781711634 2258 dbSNP
rs755919238 2262 dbSNP
rs902491270 2270 dbSNP
rs1184166666 2275 dbSNP
rs536204499 2284 dbSNP
rs1442556242 2285 dbSNP
rs1028451565 2289 dbSNP
rs1457920513 2297 dbSNP
rs1385391028 2298 dbSNP
rs537358082 2298 dbSNP
rs1164641420 2302 dbSNP
rs151164776 2304 dbSNP
rs997576392 2304 dbSNP
rs1382533482 2309 dbSNP
rs1244695014 2313 dbSNP
rs957079679 2315 dbSNP
rs1032789710 2327 dbSNP
rs943523077 2331 dbSNP
rs1236490412 2332 dbSNP
rs1211726154 2333 dbSNP
rs1488808400 2337 dbSNP
rs1264820387 2350 dbSNP
rs888060083 2364 dbSNP
rs1244431052 2368 dbSNP
rs1049275397 2370 dbSNP
rs928995205 2374 dbSNP
rs918893324 2394 dbSNP
rs1364213557 2395 dbSNP
rs1471009631 2396 dbSNP
rs998502374 2397 dbSNP
rs1411441162 2400 dbSNP
rs902887764 2404 dbSNP
rs1024632278 2405 dbSNP
rs114654341 2406 dbSNP
rs1309713914 2414 dbSNP
rs1330088154 2420 dbSNP
rs949855219 2426 dbSNP
rs1440384600 2429 dbSNP
rs117071043 2431 dbSNP
rs1055606035 2433 dbSNP
rs1239053678 2433 dbSNP
rs1328121979 2434 dbSNP
rs930508953 2437 dbSNP
rs1342228057 2444 dbSNP
rs957159366 2448 dbSNP
rs1251075286 2451 dbSNP
rs898568241 2451 dbSNP
rs373284657 2456 dbSNP
rs967126703 2460 dbSNP
rs1020983028 2462 dbSNP
rs566122446 2463 dbSNP
rs546339176 2471 dbSNP
rs1465574318 2472 dbSNP
rs901965099 2474 dbSNP
rs940017183 2476 dbSNP
rs114262870 2477 dbSNP
rs1307880994 2478 dbSNP
rs1362917777 2479 dbSNP
rs142127803 2484 dbSNP
rs1419417902 2485 dbSNP
rs1284749860 2494 dbSNP
rs1378700696 2496 dbSNP
rs1328877257 2509 dbSNP
rs1231820407 2514 dbSNP
rs1251371833 2519 dbSNP
rs568797883 2520 dbSNP
rs934236640 2520 dbSNP
rs929591338 2521 dbSNP
rs1490438517 2529 dbSNP
rs898055382 2534 dbSNP
rs921527975 2539 dbSNP
rs550718825 2547 dbSNP
rs1045441863 2549 dbSNP
rs1432685122 2554 dbSNP
rs1189475476 2557 dbSNP
rs1489223347 2592 dbSNP
rs1190665228 2593 dbSNP
rs758498362 2594 dbSNP
rs1366602522 2599 dbSNP
rs1426897608 2608 dbSNP
rs948084308 2610 dbSNP
rs975565202 2615 dbSNP
rs750441855 2616 dbSNP
rs530595662 2621 dbSNP
rs1388208769 2623 dbSNP
rs949745071 2625 dbSNP
rs776545930 2639 dbSNP
rs1295728121 2645 dbSNP
rs1327657572 2649 dbSNP
rs1226117836 2650 dbSNP
rs925687890 2653 dbSNP
rs977201499 2656 dbSNP
rs967538455 2659 dbSNP
rs1257415864 2666 dbSNP
rs75838476 2667 dbSNP
rs1014352997 2680 dbSNP
rs1311143655 2683 dbSNP
rs958638371 2684 dbSNP
rs185170882 2690 dbSNP
rs925748151 2691 dbSNP
rs1188518250 2692 dbSNP
rs180721661 2693 dbSNP
rs994628702 2700 dbSNP
rs922507676 2701 dbSNP
rs1368228124 2705 dbSNP
rs1399811067 2708 dbSNP
rs188583471 2711 dbSNP
rs1289038176 2712 dbSNP
rs1036161842 2713 dbSNP
rs1432182330 2717 dbSNP
rs966405011 2735 dbSNP
rs1017644646 2739 dbSNP
rs1466744514 2746 dbSNP
rs762369347 2751 dbSNP
rs1377202111 2752 dbSNP
rs1262667954 2756 dbSNP
rs952120085 2771 dbSNP
rs1478806374 2777 dbSNP
rs371722841 2783 dbSNP
rs1243821950 2791 dbSNP
rs1263857241 2791 dbSNP
rs1180604858 2795 dbSNP
rs1413553001 2805 dbSNP
rs887209314 2811 dbSNP
rs543153435 2813 dbSNP
rs1487213650 2830 dbSNP
rs369221433 2835 dbSNP
rs574146454 2842 dbSNP
rs1450185895 2855 dbSNP
rs373911480 2868 dbSNP
rs1300955764 2870 dbSNP
rs1257972868 2875 dbSNP
rs1200743245 2876 dbSNP
rs1391689018 2883 dbSNP
rs1309435934 2904 dbSNP
rs754352297 2906 dbSNP
rs139796774 2910 dbSNP
rs1253822754 2919 dbSNP
rs1208681612 2921 dbSNP
rs936144283 2931 dbSNP
rs1055566179 2940 dbSNP
rs746050606 2949 dbSNP
rs1179380865 2951 dbSNP
rs977587149 2953 dbSNP
rs200224206 2964 dbSNP
rs546379858 2964 dbSNP
rs1041611112 2969 dbSNP
rs945861572 2971 dbSNP
rs539251281 2974 dbSNP
rs1429407861 2988 dbSNP
rs1218533976 3000 dbSNP
rs1173869392 3001 dbSNP
rs531420555 3001 dbSNP
rs1462419011 3002 dbSNP
rs1309667861 3003 dbSNP
rs922550814 3004 dbSNP
rs1409473459 3005 dbSNP
rs1336548927 3016 dbSNP
rs1396917553 3019 dbSNP
rs1369827252 3020 dbSNP
rs578099249 3030 dbSNP
rs1217490557 3034 dbSNP
rs1401776875 3040 dbSNP
rs183815964 3050 dbSNP
rs1467270240 3051 dbSNP
rs1424395265 3058 dbSNP
rs966088945 3060 dbSNP
rs761069159 3069 dbSNP
rs534984004 3085 dbSNP
rs17125749 3089 dbSNP
rs1269065795 3103 dbSNP
rs775034711 3106 dbSNP
rs1478730803 3119 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HEK293S
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in GSM1084069. RNA binding protein: AGO2. Condition:CLIP_emetine_SigmaAb ...

- Karginov FV; Hannon GJ, 2013, Genes & development.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1 
miRNA  3' gaacaCAAUCUUGUCUCCGUUa 5'
               |||: |:: ||| ::| 
Target 5' caaagGUUGCAGU-GAGCUGAg 3'
 		1 - 21
Article - Karginov FV; Hannon GJ
- Genes & development, 2013
When adapting to environmental stress, cells attenuate and reprogram their translational output. In part, these altered translation profiles are established through changes in the interactions between RNA-binding proteins and mRNAs. The Argonaute 2 (Ago2)/microRNA (miRNA) machinery has been shown to participate in stress-induced translational up-regulation of a particular mRNA, CAT-1; however, a detailed, transcriptome-wide understanding of the involvement of Ago2 in the process has been lacking. Here, we profiled the overall changes in Ago2-mRNA interactions upon arsenite stress by cross-linking immunoprecipitation (CLIP) followed by high-throughput sequencing (CLIP-seq). Ago2 displayed a significant remodeling of its transcript occupancy, with the majority of 3' untranslated region (UTR) and coding sequence (CDS) sites exhibiting stronger interaction. Interestingly, target sites that were destined for release from Ago2 upon stress were depleted in miRNA complementarity signatures, suggesting an alternative mode of interaction. To compare the changes in Ago2-binding patterns across transcripts with changes in their translational states, we measured mRNA profiles on ribosome/polysome gradients by RNA sequencing (RNA-seq). Increased Ago2 occupancy correlated with stronger repression of translation for those mRNAs, as evidenced by a shift toward lighter gradient fractions upon stress, while release of Ago2 was associated with the limited number of transcripts that remained translated. Taken together, these data point to a role for Ago2 and the mammalian miRNAs in mediating the translational component of the stress response.
LinkOut: [PMID: 23824327]
CLIP-seq Support 1 for dataset GSM4903833
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_a
Location of target site NM_198066 | 3UTR | UGAACCCGGGAGGCAAAGGUUGCAGUGAGCUGAGAUCACACCACUGCACUCCAGCCUGGCGACAGAGAGAGACUCC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM4903834
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_b
Location of target site NM_198066 | 3UTR | UGAACCCGGGAGGCAAAGGUUGCAGUGAGCUGAGAUCACACCACUGCACUCCAGCCUGGCGACAGAGAGAGACUCC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 3 for dataset GSM4903835
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_c
Location of target site NM_198066 | 3UTR | AAUCGCUUGAACCCGGGAGGCAAAGGUUGCAGUGAGCUGAGAUCACACCACUGCACUCCAGCCUGG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 4 for dataset GSM4903836
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / 124_TD_21_a
Location of target site NM_198066 | 3UTR | GGCAAAGGUUGCAGUGAGCUGAGAUCACACCACUGCACUCCAGCCUGG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 5 for dataset GSM4903837
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / 124_TD_21_b
Location of target site NM_198066 | 3UTR | UCGCUUGAACCCGGGAGGCAAAGGUUGCAGUGAGCUGAGAUCACACCACUGCACUCCAGCCUGG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 6 for dataset GSM4903838
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / 124_TD_21_c
Location of target site NM_198066 | 3UTR | CUUGAACCCGGGAGGCAAAGGUUGCAGUGAGCUGAGAUCACACCACUGCACUCCAGCCUGG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 7 for dataset GSM1084069
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_emetine_SigmaAb
Location of target site ENST00000216410.3 | 3UTR | CAAAGGUUGCAGUGAGCUGAGAU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
75 hsa-miR-3152-5p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT092535 KBTBD8 kelch repeat and BTB domain containing 8 2 6
MIRT461731 NDUFA2 NADH:ubiquinone oxidoreductase subunit A2 2 2
MIRT468456 SET SET nuclear proto-oncogene 2 2
MIRT482192 AHR aryl hydrocarbon receptor 2 2
MIRT507923 BZW1 basic leucine zipper and W2 domains 1 2 4
MIRT512208 C18orf25 chromosome 18 open reading frame 25 2 6
MIRT526238 STARD4 StAR related lipid transfer domain containing 4 2 2
MIRT536131 MAPK14 mitogen-activated protein kinase 14 2 2
MIRT536280 LIMA1 LIM domain and actin binding 1 2 2
MIRT544251 LRIF1 ligand dependent nuclear receptor interacting factor 1 2 2
MIRT548054 GOLGA7 golgin A7 2 2
MIRT563443 ISCA1 iron-sulfur cluster assembly 1 2 2
MIRT565643 SIX4 SIX homeobox 4 2 2
MIRT614870 PDE12 phosphodiesterase 12 2 2
MIRT614923 MARCH6 membrane associated ring-CH-type finger 6 2 2
MIRT615793 FAM124A family with sequence similarity 124 member A 2 2
MIRT618557 VLDLR very low density lipoprotein receptor 2 2
MIRT622147 SORBS2 sorbin and SH3 domain containing 2 2 2
MIRT622390 RSBN1 round spermatid basic protein 1 2 2
MIRT624185 DDX19B DEAD-box helicase 19B 2 2
MIRT624448 CALCOCO2 calcium binding and coiled-coil domain 2 2 2
MIRT625340 TAPBP TAP binding protein 2 2
MIRT625370 IRGQ immunity related GTPase Q 2 2
MIRT627276 WSB1 WD repeat and SOCS box containing 1 2 2
MIRT627746 RAD54L2 RAD54 like 2 2 2
MIRT629578 RFC2 replication factor C subunit 2 2 4
MIRT630537 LGALS8 galectin 8 2 4
MIRT630559 C3orf36 chromosome 3 open reading frame 36 2 4
MIRT630568 SOWAHA sosondowah ankyrin repeat domain family member A 2 4
MIRT630763 MSANTD3 Myb/SANT DNA binding domain containing 3 2 2
MIRT635424 LRP10 LDL receptor related protein 10 2 2
MIRT636011 GNPNAT1 glucosamine-phosphate N-acetyltransferase 1 2 2
MIRT636337 PHAX phosphorylated adaptor for RNA export 2 2
MIRT638413 POU3F2 POU class 3 homeobox 2 2 2
MIRT639358 INIP INTS3 and NABP interacting protein 2 2
MIRT642124 DYRK1A dual specificity tyrosine phosphorylation regulated kinase 1A 2 4
MIRT642828 KIAA0319 KIAA0319 2 2
MIRT644017 NUCB1 nucleobindin 1 2 2
MIRT644038 WWC2 WW and C2 domain containing 2 2 2
MIRT644153 GIN1 gypsy retrotransposon integrase 1 2 2
MIRT644649 SNX9 sorting nexin 9 2 2
MIRT645798 OMA1 OMA1 zinc metallopeptidase 2 2
MIRT647633 FAIM2 Fas apoptotic inhibitory molecule 2 2 2
MIRT648528 KIAA1143 KIAA1143 2 2
MIRT648851 PDLIM3 PDZ and LIM domain 3 2 2
MIRT648880 TUBGCP5 tubulin gamma complex associated protein 5 2 2
MIRT650777 TNFRSF10A TNF receptor superfamily member 10a 2 2
MIRT654200 RNF19B ring finger protein 19B 2 2
MIRT654508 RAB5B RAB5B, member RAS oncogene family 2 2
MIRT655249 PEX26 peroxisomal biogenesis factor 26 2 2
MIRT656089 MTA3 metastasis associated 1 family member 3 2 2
MIRT656599 LRRC55 leucine rich repeat containing 55 2 2
MIRT659194 CYBB cytochrome b-245 beta chain 2 2
MIRT660000 C1orf115 chromosome 1 open reading frame 115 2 4
MIRT661715 KLF8 Kruppel like factor 8 2 2
MIRT661813 PRPSAP1 phosphoribosyl pyrophosphate synthetase associated protein 1 2 2
MIRT668360 FGD4 FYVE, RhoGEF and PH domain containing 4 2 2
MIRT679734 CABP4 calcium binding protein 4 2 2
MIRT708616 NUDT18 nudix hydrolase 18 2 2
MIRT709034 TROVE2 TROVE domain family member 2 2 2
MIRT709573 DMGDH dimethylglycine dehydrogenase 2 2
MIRT709665 AJAP1 adherens junctions associated protein 1 2 2
MIRT709874 TRAF1 TNF receptor associated factor 1 2 2
MIRT710821 NLRP12 NLR family pyrin domain containing 12 2 2
MIRT710883 PARL presenilin associated rhomboid like 2 2
MIRT711547 LCAT lecithin-cholesterol acyltransferase 2 2
MIRT712017 STX1B syntaxin 1B 2 2
MIRT713058 BLVRA biliverdin reductase A 2 2
MIRT713129 THRB thyroid hormone receptor beta 2 2
MIRT713878 MOB3A MOB kinase activator 3A 2 2
MIRT714154 NXPH3 neurexophilin 3 2 2
MIRT719755 FLYWCH1 FLYWCH-type zinc finger 1 2 2
MIRT720213 KCNK1 potassium two pore domain channel subfamily K member 1 2 2
MIRT722728 BRMS1 breast cancer metastasis suppressor 1 2 2
MIRT725652 ABI2 abl interactor 2 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-3152-5p Palbociclib 5330286 NSC758247 approved resistant cell line (T47D)
hsa-miR-3152-5p Palbociclib 5330286 NSC758247 approved resistant tissue (breast cancer)

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