pre-miRNA Information
pre-miRNA hsa-mir-640   
Genomic Coordinates chr19: 19435063 - 19435158
Synonyms MIRN640, hsa-mir-640, MIR640
Description Homo sapiens miR-640 stem-loop
Comment None
RNA Secondary Structure
Associated Diseases

Mature miRNA Information
Mature miRNA hsa-miR-640
Sequence 61| AUGAUCCAGGAACCUGCCUCU |81
Evidence Experimental
Experiments RT-PCR
DRVs in miRNA
Mutant ID Mutant Position Mutant Source
COSN30153378 1 COSMIC
COSN23015356 12 COSMIC
COSN30513185 19 COSMIC
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs111726405 1 dbSNP
rs765622881 2 dbSNP
rs1249744889 6 dbSNP
rs752995186 12 dbSNP
rs758746736 13 dbSNP
rs918887970 19 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol YPEL1   
Synonyms FKSG3
Description yippee like 1
Transcript NM_013313   
Expression
Putative miRNA Targets on YPEL1
3'UTR of YPEL1
(miRNA target sites are highlighted)
>YPEL1|NM_013313|3'UTR
   1 TGTGCGAACTTTCCCTTCTCCTTTGAATGCTGTTTTGTGAAAGAAACTGTGAATGTAATGGAAACGTAGGAGCATCTGGT
  81 GACAGCCTTTCTTGCCCTCTGACCTCAAAGGCTAGCTGCGCATAGCTCTTGACACTCTCGGCCATCTCTGTGGGTAAGGT
 161 GTCCCTCGGATCTGTCCTCTTCGTGTACACAGTTGTTTCTGAAAATTTTCAATGAGCTTTTTCTAACTTCTCAAGTTCTA
 241 GAGAAAGAATTAACCAACTGATGACTTACCTGCCTAGTTAATATCTTCCTTTCACCTTTGTCTTCAATATAGTTGGGCTC
 321 TGCTTTTTTAAGGTTCAGTTGAAAACCAAACTGGGGCCGGGTGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGG
 401 CCAAGATGGGTGGATCACCTGAGGTCAGGAGTTCTAGATCAGCCTGGCCAACATGGTGAAACCCCATCTCTACTAAAAAT
 481 ACGAAAATTAGCCGGGCATGGTGGCGAGTGCCTGTAATCTTAGCTACTCAGGAGGCTAAGGCAGGAGAATCACTTGAACC
 561 TGGGACACGGAGGTTGCAGTGAGCTAAGATCATGCCATCGCACTCCAGCCTGGGGGACAAAAGTGAGACATCGTCTCAAA
 641 AAAAAAAAAAAAAGCTGGGTATGGTGGCGCATGCCTTTAATCCCAGCTACTCGGGAGGCTGAGGCACGAGAATCACTTGA
 721 ACCCAGGAGGCGGAGGTTGCAGTGAGCCAAGATCGCGCCACTGCACTCCAGCCTGGCAATAGGGCGAGACTCCGTCTCAA
 801 TTTAAAACAAGAGAGAACCAGACTGAGTCTCTGAAGACCACAGGGACAGGGTCTCTTTAGATAGCAAGTCTCACCATTCC
 881 CTTTTTTAGAGAAAAGGTATTGTAGCCCACCCTCCACCCCGCTGTTTTTCTTAAATTTGCAGAACTTCAAATTGGCTATT
 961 CCTCTTGCAAATGAACCCTTAAAGTACAGTGTTATTTAAGAATCTTCCAGAGGCAGTCAACAGACTTATACACTAAGGGC
1041 ATTTTTGGTTTTTAGCTTGTTCAAAAACAGAGGCCAGCACAGATGACATTTTAGATACACTCTAAATTGAGAATGGTGTC
1121 TAGTGGAACATGTTTATTTAAGCCAGTAGATTCCTTATCTAGAAAGCAGGTGAGCTAGCCCTTAGAGAAGGCTGTCCCGG
1201 GGCCCGCAGAGGTGCCCTTACTGAGGTGACAGCCTCACAGGGTCTGGTACCAGGGGTTGTGCCCTCAGCAGTGACAGCAG
1281 CTTAGGTGTCAGGCAGTTGCTGAGTGGCTGGTCCATGTCTATAGAGTAACACACTGGACCGAGGAAAAGTCAGATTTCAT
1361 TTTCTACCCTGGATGTACTTGAAGAAAAAGAATTATTTTTGCATATGAAAGAGGCCAGAACCCACAGGAAAAACTTCAAA
1441 ACTTGACATTTGCCAGAATGTTTAAAATTTGTTCAGAAAAGGTTAAAGCAACAAGTTTAGCCTTTGTGCATGAAGACGCC
1521 TGGCCTGCTAGACGCGTTGCCCGTCCCTGCGTGGTGCTGTCCCATGTCACTTGAACTGATAGAGGGGCCTGTGCAATCTC
1601 CTAAGGCCTGTGTTTCTGCCATATATTTTATTATAAATTACAATCCACTCATCCACCTGCCCTCCACCAGGAGTGGGCAC
1681 CCCATAAGGGTTTAGGCCACTTTGCAGAGGATGGAGGTCAAAAACCACTCCCAGATAAGTTTGGTTTTCAACATTTAGTA
1761 ACTTGTCTCAGGGCAGAGGGCAGGCAGGGGGACCGAGGGGCAGCAGATAGGAGAGCACTGAGCCCGGATAGTTCTCAGCC
1841 TGGCAAGTGGCTCTGAAGCTGCCTTCAGACAAGGCTAGTCTAGGGGCAAGAGTGCGAGCTGGCTGACAATAAGAACGTGG
1921 CCACCTGCCCAGCTTCACACCTCCCCCGACTTCAGCCCTTCCTAAACCCAGACCTGCGGTCCAGGCAGGCACTGGGCTGT
2001 GCCCACTCGAGCTCACTGCCCACACACAGCATGCCTTTGGGTGCCATCTCTTTGCCCAAGCCTGGAAGCCTTGGCAGGTG
2081 GGAAATGCCGCTGCCCTGGTGGGCATGGCACTGAGATGCATCCACTCAGCAGGAGTGACAGAGGCAGAAGTTCCTTTAAA
2161 GCACATCTTCCACTTAGGAAAGGAAGGAAATCTTTGTACTGTCTTGGAAGCCTCCACATCCGGCTATGGCCCTGCAAGCT
2241 GCTTTATCCCTGCGCTAGTCTCCCCCGAGGGTTTAGGCTGGCCCAGCACATCCTGTCCTCCTGAGCTCGCGTGCAGCCAC
2321 CCAGAGCGCAGGGGTCACTGCACGCTGCAGGGCTCTTGCTGCCATGGTCTCAAGCCTGAAGAGGCTCCGCCCACAAGCTG
2401 GCCCATGAAGTTAGCAATGCCTGTGGCTTCAGTCAATTGTCTTGAGACTGTGAAGAGGCTGAAAGACACCTTCCCGGGTG
2481 GAAGAAGGAGTTCACTGAAAACTTATCTTAAACTGACCCTTCCCTTTGAGTGAGTCTTCATTCCTCTCCCATGTGGGAAC
2561 CCAGCCTCCGATGCCCCGGGGACTAGGGGAAACAGTTGGAGGTTCGTGCCGTCCCCAGCCTGCCACGGGTGCGAGGACAG
2641 CCAAGTCCTGAGTGACTCAAGATGCTTCACTTACATGGAAGAAACTTCTAAAACTCTACCGAGTGGTTTTTGTATATACT
2721 AAAGTTCTATTTAGAGCTTTTCTGTTTTGGGCAAGTTCGCTGCTCCTTCTATTTGGGCACTTTGGTTTTTGTACTGTCTT
2801 TTGTGACGGCATTGATTGAACATTTTTTACTAGTAGTCTTATGACTTTTGTATTTTTTTTTTTTTTTGTAATTTATACCA
2881 ACAACACTTTTATCACTTTTTTTTTGTTGGGCTTCTGCAAAATACAAGCTCATTTTTAAACCAAATGAACAGACCATGAG
2961 CTGGCTTCAGGGGAAGTGCTATTCACAGGACCATATCCACCACCCTCTTAAATTCCTAAACAATATCATCTAGGACTTCT
3041 ATTTAAGTTATTTAAAATAAATCTTCCTTGAGAGCCTTGGGAGGTGATGTCAGGGTTATAAATGGCACAGTGCATTTGCT
3121 GTAGGAATGTGGTTTGGCATTGTTTTATACACACAGTATTTTTTATACCTTAATGCTTATTCTTGATGGCATCTGTCAGA
3201 TATTAGAATTGAAAATAAGAATCTTCCCAAAATCCTTTAATTTACCTGATGCCCTCATCAGGTCGTTAAAAATTCAAATG
3281 GTTTTAATAGCTAAAAAACTACAAATTAAGCTCTAAAACAAACAAACTACAGAAATGTAAACCTTCATTTGCCAAAGGTC
3361 CTTGGTGGCCTGTCCCCTGCCCTGGGAGCAGATGGCCCTGAAGCCCTTCCCTCACTGTGCAGGCCACCGGGTGAGGCTGG
3441 ACGGTCACCCATGGTGGCTTCACTGCAAGGAGCAGGACTGCCGAGCTCAAGCACGGGGCCTTCAGCTTCCCCTGTCCTCT
3521 GGCCACACCGCCAGCCCTTGGTCCTTATCTGTGTGAGGTTTACAAATAAAGCTTCTGATGTCAAATGTTTAAAAAAAAAA
3601 AAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' ucUCCG--UCCAAGGACCUAGUa 5'
            ||||  || |   ||||||| 
Target 5' ggAGGCCAAGATGGGTGGATCAc 3'
396 - 418 153.00 -15.10
2
miRNA  3' ucUCC-GUCC-AAGGACCUAGUa 5'
            ||| ||||  |:|| ||||| 
Target 5' tgAGGTCAGGAGTTCTAGATCAg 3'
420 - 442 135.00 -19.10
3
miRNA  3' ucUCCGUCCAAGG--ACCUAGUa 5'
            :||| || | |  ||| ||| 
Target 5' tgGGGCCGGGTGCGGTGGCTCAc 3'
352 - 374 125.00 -15.20
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN30453931 21 COSMIC
COSN30496925 65 COSMIC
COSN30701491 70 COSMIC
COSN31545428 168 COSMIC
COSN31605477 182 COSMIC
COSN32063640 237 COSMIC
COSN21734023 1196 COSMIC
COSN21879207 1232 COSMIC
COSN31597019 1235 COSMIC
COSN30165091 1246 COSMIC
COSN30164281 1390 COSMIC
COSN31779388 1404 COSMIC
COSN8008962 1453 COSMIC
COSN31481307 1578 COSMIC
COSN31961948 2064 COSMIC
COSN28162924 2398 COSMIC
COSN5454330 2475 COSMIC
COSN5989159 2503 COSMIC
COSN23211020 2843 COSMIC
COSN20093930 2852 COSMIC
COSN20117195 2852 COSMIC
COSN20117196 2853 COSMIC
COSN15663140 2867 COSMIC
COSN20117192 2896 COSMIC
COSN31961947 3093 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs112731329 5 dbSNP
rs78391197 6 dbSNP
rs764614308 10 dbSNP
rs763585499 11 dbSNP
rs1325461995 12 dbSNP
rs920224600 15 dbSNP
rs776183659 16 dbSNP
rs764822264 20 dbSNP
rs1860 24 dbSNP
rs1419746083 25 dbSNP
rs781158827 25 dbSNP
rs1308597909 27 dbSNP
rs1297545816 29 dbSNP
rs1393771924 32 dbSNP
rs776344526 35 dbSNP
rs770492767 37 dbSNP
rs770990257 43 dbSNP
rs746757620 48 dbSNP
rs1158873212 51 dbSNP
rs547634027 54 dbSNP
rs1330300531 57 dbSNP
rs1278200522 62 dbSNP
rs1228966863 63 dbSNP
rs533863529 65 dbSNP
rs1311712647 66 dbSNP
rs1354553186 67 dbSNP
rs1216026307 71 dbSNP
rs1859 78 dbSNP
rs1489760685 87 dbSNP
rs548417776 88 dbSNP
rs1267183349 94 dbSNP
rs1431789174 95 dbSNP
rs1387172230 101 dbSNP
rs1022964449 119 dbSNP
rs566502265 120 dbSNP
rs1157549108 122 dbSNP
rs1329260039 122 dbSNP
rs1459443661 130 dbSNP
rs960121153 134 dbSNP
rs531427324 135 dbSNP
rs710172 138 dbSNP
rs552180961 139 dbSNP
rs532169227 140 dbSNP
rs1306008938 142 dbSNP
rs1027228291 144 dbSNP
rs1239619696 149 dbSNP
rs1010853394 153 dbSNP
rs956603357 159 dbSNP
rs1030880659 167 dbSNP
rs766813062 168 dbSNP
rs1444493581 170 dbSNP
rs890262021 171 dbSNP
rs1200946552 176 dbSNP
rs559909440 178 dbSNP
rs540874065 182 dbSNP
rs1050195749 183 dbSNP
rs934447702 184 dbSNP
rs1425022980 185 dbSNP
rs996304688 187 dbSNP
rs1236668701 198 dbSNP
rs1459766200 200 dbSNP
rs1172575263 214 dbSNP
rs1043037026 215 dbSNP
rs898852091 217 dbSNP
rs1037758545 225 dbSNP
rs1381493480 227 dbSNP
rs536591410 233 dbSNP
rs1312041101 244 dbSNP
rs947270255 255 dbSNP
rs915928032 267 dbSNP
rs1259187078 279 dbSNP
rs1317673415 280 dbSNP
rs940980886 281 dbSNP
rs1197084164 283 dbSNP
rs960400126 284 dbSNP
rs575039231 285 dbSNP
rs908132071 286 dbSNP
rs1057275016 300 dbSNP
rs928700187 306 dbSNP
rs1233463035 307 dbSNP
rs982819332 313 dbSNP
rs761017537 315 dbSNP
rs1254795261 318 dbSNP
rs1292948812 319 dbSNP
rs1195745076 331 dbSNP
rs773636496 339 dbSNP
rs370835750 351 dbSNP
rs1377632084 352 dbSNP
rs1330789154 354 dbSNP
rs1215821535 356 dbSNP
rs1464887999 357 dbSNP
rs113593856 358 dbSNP
rs1401538385 359 dbSNP
rs1173390479 360 dbSNP
rs1302347100 362 dbSNP
rs980234735 364 dbSNP
rs550806929 365 dbSNP
rs969195717 367 dbSNP
rs914614226 374 dbSNP
rs376169525 375 dbSNP
rs1158481048 398 dbSNP
rs1279368113 398 dbSNP
rs964298053 399 dbSNP
rs1213212817 404 dbSNP
rs1017708176 405 dbSNP
rs1440674174 410 dbSNP
rs988811406 418 dbSNP
rs1254970944 432 dbSNP
rs759347749 434 dbSNP
rs1218766535 437 dbSNP
rs762072379 452 dbSNP
rs544449195 454 dbSNP
rs1008788078 457 dbSNP
rs954543666 458 dbSNP
rs1477429578 462 dbSNP
rs1254799193 479 dbSNP
rs138104713 481 dbSNP
rs995966573 482 dbSNP
rs768742675 483 dbSNP
rs1015970356 493 dbSNP
rs558657435 494 dbSNP
rs1004507208 496 dbSNP
rs779982688 497 dbSNP
rs886072259 505 dbSNP
rs769908406 506 dbSNP
rs938919620 509 dbSNP
rs1429171881 526 dbSNP
rs1042899477 527 dbSNP
rs868802249 537 dbSNP
rs1368746601 539 dbSNP
rs906060608 540 dbSNP
rs1242445580 544 dbSNP
rs915788769 547 dbSNP
rs1044951511 563 dbSNP
rs1218202929 568 dbSNP
rs1335008082 569 dbSNP
rs1416683132 573 dbSNP
rs1358914436 579 dbSNP
rs1297784996 588 dbSNP
rs1438673609 598 dbSNP
rs1373067094 599 dbSNP
rs947537608 600 dbSNP
rs914647016 603 dbSNP
rs988863705 612 dbSNP
rs1488673334 616 dbSNP
rs928624288 617 dbSNP
rs913236819 618 dbSNP
rs1441728766 624 dbSNP
rs1159346001 625 dbSNP
rs1293914949 630 dbSNP
rs1472720879 630 dbSNP
rs1461257529 631 dbSNP
rs982852157 632 dbSNP
rs1188122053 633 dbSNP
rs1486354996 635 dbSNP
rs1295644672 637 dbSNP
rs1215392088 639 dbSNP
rs1368361591 641 dbSNP
rs1447387888 652 dbSNP
rs1222054658 654 dbSNP
rs1241793754 654 dbSNP
rs1309355439 654 dbSNP
rs1349322270 654 dbSNP
rs397718297 654 dbSNP
rs56946669 654 dbSNP
rs1491217315 655 dbSNP
rs1226393858 656 dbSNP
rs538770370 658 dbSNP
rs1293808201 660 dbSNP
rs1235256357 662 dbSNP
rs1057036371 665 dbSNP
rs1468645465 668 dbSNP
rs573160687 669 dbSNP
rs1400774671 670 dbSNP
rs1347324931 672 dbSNP
rs553097383 673 dbSNP
rs934664286 675 dbSNP
rs1405132535 677 dbSNP
rs1392148092 680 dbSNP
rs1448617844 692 dbSNP
rs1331585942 693 dbSNP
rs1167697606 694 dbSNP
rs912541898 695 dbSNP
rs987406348 707 dbSNP
rs954773240 708 dbSNP
rs1028858603 710 dbSNP
rs534053898 721 dbSNP
rs373986517 723 dbSNP
rs568407367 726 dbSNP
rs1243475865 730 dbSNP
rs548403737 731 dbSNP
rs1450787061 732 dbSNP
rs538067456 735 dbSNP
rs187210885 738 dbSNP
rs1189728721 739 dbSNP
rs1215430701 754 dbSNP
rs552268829 755 dbSNP
rs1316155518 756 dbSNP
rs1426305881 757 dbSNP
rs1466443039 759 dbSNP
rs532131202 765 dbSNP
rs59864261 778 dbSNP
rs1215239214 780 dbSNP
rs546317790 783 dbSNP
rs998636429 784 dbSNP
rs12484560 785 dbSNP
rs530417558 786 dbSNP
rs1003113626 788 dbSNP
rs1414159001 788 dbSNP
rs1291340467 793 dbSNP
rs149583134 794 dbSNP
rs1328548713 796 dbSNP
rs138189529 799 dbSNP
rs1337710810 803 dbSNP
rs947552088 804 dbSNP
rs1485377076 808 dbSNP
rs861817 811 dbSNP
rs1266015741 819 dbSNP
rs1192939041 826 dbSNP
rs1478407188 826 dbSNP
rs1055752536 829 dbSNP
rs1371636306 831 dbSNP
rs1474262481 841 dbSNP
rs536421002 843 dbSNP
rs938579263 844 dbSNP
rs113514267 846 dbSNP
rs1362396648 851 dbSNP
rs1400468698 860 dbSNP
rs1294591180 861 dbSNP
rs1324463609 867 dbSNP
rs907229935 870 dbSNP
rs1053210524 871 dbSNP
rs934711903 889 dbSNP
rs1347379148 897 dbSNP
rs1232212752 901 dbSNP
rs12159550 902 dbSNP
rs1421257268 906 dbSNP
rs1205059165 907 dbSNP
rs565156852 917 dbSNP
rs545434811 920 dbSNP
rs1477585210 921 dbSNP
rs1395336435 924 dbSNP
rs1453368224 933 dbSNP
rs919973374 939 dbSNP
rs1381556365 940 dbSNP
rs986790069 941 dbSNP
rs1454307450 948 dbSNP
rs1288201841 952 dbSNP
rs1382573616 954 dbSNP
rs1253329835 955 dbSNP
rs573268377 959 dbSNP
rs942917851 961 dbSNP
rs921845672 962 dbSNP
rs553324828 973 dbSNP
rs1257333202 982 dbSNP
rs963556850 989 dbSNP
rs1205378318 990 dbSNP
rs1311646335 997 dbSNP
rs1309304070 1019 dbSNP
rs1354493227 1019 dbSNP
rs1239024839 1020 dbSNP
rs1259459368 1021 dbSNP
rs1276814263 1022 dbSNP
rs1218819840 1023 dbSNP
rs1016033735 1029 dbSNP
rs1349067371 1029 dbSNP
rs955801726 1033 dbSNP
rs542704142 1035 dbSNP
rs1191354323 1046 dbSNP
rs1306173886 1049 dbSNP
rs1445007051 1059 dbSNP
rs752209520 1072 dbSNP
rs1158341925 1073 dbSNP
rs1376874431 1084 dbSNP
rs1030017112 1085 dbSNP
rs977044578 1087 dbSNP
rs111988660 1090 dbSNP
rs140460375 1095 dbSNP
rs1460128227 1099 dbSNP
rs776697980 1101 dbSNP
rs1355719621 1104 dbSNP
rs1390927662 1109 dbSNP
rs538155894 1118 dbSNP
rs756656498 1129 dbSNP
rs1342793723 1132 dbSNP
rs1173530619 1138 dbSNP
rs969718528 1149 dbSNP
rs1011736579 1150 dbSNP
rs1333132909 1158 dbSNP
rs894332146 1162 dbSNP
rs376302274 1187 dbSNP
rs1034583675 1198 dbSNP
rs56692226 1199 dbSNP
rs1176140924 1201 dbSNP
rs371508923 1202 dbSNP
rs907104802 1203 dbSNP
rs1011809641 1205 dbSNP
rs893315504 1206 dbSNP
rs558481457 1212 dbSNP
rs1175347494 1214 dbSNP
rs1172505291 1215 dbSNP
rs1355357384 1217 dbSNP
rs1461617610 1221 dbSNP
rs898494470 1232 dbSNP
rs1404432120 1242 dbSNP
rs1053264729 1247 dbSNP
rs1177673312 1254 dbSNP
rs532445700 1255 dbSNP
rs1038457798 1256 dbSNP
rs1353997221 1266 dbSNP
rs1481671491 1273 dbSNP
rs1220880661 1283 dbSNP
rs942763323 1285 dbSNP
rs538716501 1288 dbSNP
rs891212143 1293 dbSNP
rs372451820 1305 dbSNP
rs1249173560 1309 dbSNP
rs980319120 1312 dbSNP
rs750765817 1322 dbSNP
rs1238479249 1326 dbSNP
rs924153604 1340 dbSNP
rs1442123234 1341 dbSNP
rs978329708 1367 dbSNP
rs12167445 1372 dbSNP
rs1195590742 1386 dbSNP
rs1419879783 1387 dbSNP
rs967072075 1388 dbSNP
rs1168580307 1397 dbSNP
rs1308362581 1401 dbSNP
rs1435382284 1405 dbSNP
rs1021280002 1407 dbSNP
rs921246616 1418 dbSNP
rs1402328727 1434 dbSNP
rs1289886283 1439 dbSNP
rs768809375 1443 dbSNP
rs958670802 1446 dbSNP
rs1039381838 1457 dbSNP
rs1003079542 1458 dbSNP
rs941945521 1471 dbSNP
rs1349554483 1474 dbSNP
rs767821537 1477 dbSNP
rs907137534 1482 dbSNP
rs75698488 1491 dbSNP
rs983246751 1492 dbSNP
rs1242544344 1504 dbSNP
rs994043017 1506 dbSNP
rs546553277 1507 dbSNP
rs529673306 1511 dbSNP
rs73382399 1517 dbSNP
rs747049367 1518 dbSNP
rs981188148 1527 dbSNP
rs1173095434 1528 dbSNP
rs3747095 1533 dbSNP
rs1022609214 1534 dbSNP
rs117358614 1535 dbSNP
rs1012268515 1536 dbSNP
rs3747094 1538 dbSNP
rs386819862 1539 dbSNP
rs879370082 1539 dbSNP
rs1372745887 1540 dbSNP
rs183019210 1542 dbSNP
rs528585669 1543 dbSNP
rs559621321 1550 dbSNP
rs1225439715 1551 dbSNP
rs1181404888 1561 dbSNP
rs1284828161 1562 dbSNP
rs1486021953 1565 dbSNP
rs990198370 1573 dbSNP
rs891264565 1574 dbSNP
rs1213410707 1577 dbSNP
rs958484111 1578 dbSNP
rs542993534 1585 dbSNP
rs1469127244 1586 dbSNP
rs1193232772 1587 dbSNP
rs927002230 1588 dbSNP
rs1251275550 1591 dbSNP
rs1259911148 1593 dbSNP
rs981207865 1595 dbSNP
rs190833158 1596 dbSNP
rs775497349 1598 dbSNP
rs1167352966 1609 dbSNP
rs994077216 1623 dbSNP
rs779213753 1633 dbSNP
rs1218376357 1639 dbSNP
rs1324775275 1641 dbSNP
rs7285388 1642 dbSNP
rs1312607033 1646 dbSNP
rs1443780123 1654 dbSNP
rs1279583303 1662 dbSNP
rs565462044 1664 dbSNP
rs1016955785 1675 dbSNP
rs1222001892 1680 dbSNP
rs1232197770 1689 dbSNP
rs1335214384 1700 dbSNP
rs1355501613 1712 dbSNP
rs1271543306 1716 dbSNP
rs899860620 1729 dbSNP
rs544472989 1733 dbSNP
rs1182643794 1735 dbSNP
rs1232312194 1737 dbSNP
rs1469110296 1744 dbSNP
rs575649327 1764 dbSNP
rs941982347 1768 dbSNP
rs1383979907 1774 dbSNP
rs1289301930 1779 dbSNP
rs1475065689 1782 dbSNP
rs1163174522 1784 dbSNP
rs1455130698 1787 dbSNP
rs889785070 1787 dbSNP
rs1051654743 1794 dbSNP
rs1353401984 1795 dbSNP
rs78285452 1797 dbSNP
rs902709440 1799 dbSNP
rs1475589519 1803 dbSNP
rs572966241 1804 dbSNP
rs1047605736 1808 dbSNP
rs538484690 1813 dbSNP
rs929156085 1821 dbSNP
rs1291153415 1822 dbSNP
rs1191779603 1825 dbSNP
rs1196594846 1826 dbSNP
rs928449878 1829 dbSNP
rs1436127858 1833 dbSNP
rs146881125 1836 dbSNP
rs1258862683 1841 dbSNP
rs552755973 1846 dbSNP
rs535960870 1847 dbSNP
rs1186272113 1863 dbSNP
rs946970734 1874 dbSNP
rs969818381 1892 dbSNP
rs915594289 1893 dbSNP
rs1476223416 1894 dbSNP
rs375147809 1895 dbSNP
rs1054134989 1896 dbSNP
rs1407745675 1898 dbSNP
rs776729113 1902 dbSNP
rs1376009940 1905 dbSNP
rs1414023095 1907 dbSNP
rs566873893 1909 dbSNP
rs770804922 1916 dbSNP
rs746797477 1917 dbSNP
rs1269792752 1920 dbSNP
rs1337646684 1921 dbSNP
rs1334933176 1938 dbSNP
rs981180546 1939 dbSNP
rs1274433171 1947 dbSNP
rs977639900 1948 dbSNP
rs971108703 1958 dbSNP
rs376364968 1959 dbSNP
rs1447911651 1962 dbSNP
rs1192874117 1963 dbSNP
rs1241184059 1967 dbSNP
rs1447227381 1969 dbSNP
rs1295806747 1971 dbSNP
rs1174984523 1973 dbSNP
rs1395159431 1977 dbSNP
rs955543149 1978 dbSNP
rs1171653948 1989 dbSNP
rs1029812130 1991 dbSNP
rs972517874 1993 dbSNP
rs1383737148 1999 dbSNP
rs550168180 2008 dbSNP
rs899911477 2009 dbSNP
rs1461831945 2014 dbSNP
rs1396587184 2017 dbSNP
rs1017395826 2018 dbSNP
rs1005517270 2020 dbSNP
rs1168688798 2029 dbSNP
rs1461527774 2032 dbSNP
rs1232793647 2035 dbSNP
rs985390608 2040 dbSNP
rs1204933305 2042 dbSNP
rs887082616 2047 dbSNP
rs1282517352 2048 dbSNP
rs537341885 2055 dbSNP
rs1463322355 2070 dbSNP
rs571895344 2077 dbSNP
rs117483801 2089 dbSNP
rs1029648593 2090 dbSNP
rs1047659143 2098 dbSNP
rs1196076915 2113 dbSNP
rs929208444 2118 dbSNP
rs998283142 2124 dbSNP
rs1309936593 2125 dbSNP
rs1454194896 2126 dbSNP
rs1157785850 2130 dbSNP
rs907072055 2137 dbSNP
rs1431829011 2142 dbSNP
rs1463265222 2143 dbSNP
rs1326791087 2144 dbSNP
rs1252700140 2151 dbSNP
rs1194810240 2168 dbSNP
rs1438833951 2174 dbSNP
rs1045558400 2185 dbSNP
rs1470273522 2187 dbSNP
rs1238959269 2190 dbSNP
rs1259405470 2195 dbSNP
rs1215216445 2196 dbSNP
rs1337375921 2196 dbSNP
rs902576076 2197 dbSNP
rs1236872954 2205 dbSNP
rs1207562658 2209 dbSNP
rs948513848 2211 dbSNP
rs1011045053 2221 dbSNP
rs778186732 2222 dbSNP
rs1206261013 2227 dbSNP
rs915664251 2228 dbSNP
rs990271918 2234 dbSNP
rs188691472 2242 dbSNP
rs145155997 2253 dbSNP
rs924250038 2254 dbSNP
rs115654105 2255 dbSNP
rs549472104 2257 dbSNP
rs955601132 2264 dbSNP
rs1030282541 2266 dbSNP
rs529410428 2267 dbSNP
rs1234306058 2270 dbSNP
rs1390928543 2286 dbSNP
rs1292999172 2287 dbSNP
rs1333710186 2288 dbSNP
rs975610773 2289 dbSNP
rs1252614561 2291 dbSNP
rs1480660689 2295 dbSNP
rs1194698385 2304 dbSNP
rs1249558272 2305 dbSNP
rs758057140 2309 dbSNP
rs116351893 2310 dbSNP
rs2329826 2311 dbSNP
rs1422348501 2315 dbSNP
rs1172779250 2318 dbSNP
rs887135010 2327 dbSNP
rs1461570268 2328 dbSNP
rs766989681 2331 dbSNP
rs778338291 2336 dbSNP
rs1377811269 2339 dbSNP
rs1415861527 2341 dbSNP
rs1025588945 2342 dbSNP
rs985808278 2343 dbSNP
rs993406838 2351 dbSNP
rs1307669722 2358 dbSNP
rs575587815 2359 dbSNP
rs754508672 2360 dbSNP
rs1350049781 2378 dbSNP
rs565065997 2382 dbSNP
rs1211495099 2383 dbSNP
rs750890558 2389 dbSNP
rs1482138271 2403 dbSNP
rs1188000968 2409 dbSNP
rs768016420 2411 dbSNP
rs1262718726 2415 dbSNP
rs1030094272 2417 dbSNP
rs1166798401 2420 dbSNP
rs1396960747 2421 dbSNP
rs1379033380 2422 dbSNP
rs1181657299 2424 dbSNP
rs1046018472 2430 dbSNP
rs948587593 2434 dbSNP
rs894270216 2435 dbSNP
rs545301319 2436 dbSNP
rs1054224011 2443 dbSNP
rs966792555 2444 dbSNP
rs1021083666 2445 dbSNP
rs1197027844 2449 dbSNP
rs935717272 2451 dbSNP
rs1010993021 2453 dbSNP
rs1234986222 2455 dbSNP
rs893989068 2457 dbSNP
rs1310321310 2471 dbSNP
rs924302318 2475 dbSNP
rs977082339 2476 dbSNP
rs754626227 2485 dbSNP
rs1186898202 2487 dbSNP
rs1255017833 2488 dbSNP
rs751216679 2488 dbSNP
rs766143202 2489 dbSNP
rs1423700774 2490 dbSNP
rs1402882759 2491 dbSNP
rs1238175019 2492 dbSNP
rs1344958457 2502 dbSNP
rs757559672 2502 dbSNP
rs933605208 2503 dbSNP
rs868029386 2505 dbSNP
rs976043168 2506 dbSNP
rs1331051588 2509 dbSNP
rs1273676183 2511 dbSNP
rs374353985 2519 dbSNP
rs1225390632 2520 dbSNP
rs1307518570 2521 dbSNP
rs1328201825 2531 dbSNP
rs1207104814 2534 dbSNP
rs1275317475 2536 dbSNP
rs964263817 2537 dbSNP
rs572920750 2539 dbSNP
rs553065026 2540 dbSNP
rs1471473947 2541 dbSNP
rs1178255985 2549 dbSNP
rs910025406 2550 dbSNP
rs984201680 2555 dbSNP
rs1407762479 2560 dbSNP
rs1471831038 2563 dbSNP
rs553133162 2569 dbSNP
rs535901458 2570 dbSNP
rs573445454 2573 dbSNP
rs1461581429 2577 dbSNP
rs762746860 2578 dbSNP
rs1347599002 2580 dbSNP
rs1444355095 2581 dbSNP
rs556538105 2584 dbSNP
rs371553316 2589 dbSNP
rs1024237601 2592 dbSNP
rs1158502039 2595 dbSNP
rs1349754044 2595 dbSNP
rs1470834855 2600 dbSNP
rs1045681 2604 dbSNP
rs1183415905 2605 dbSNP
rs949689656 2606 dbSNP
rs764371381 2610 dbSNP
rs894332168 2611 dbSNP
rs1205253545 2614 dbSNP
rs1054276931 2620 dbSNP
rs571896708 2626 dbSNP
rs1482329566 2627 dbSNP
rs1036763350 2629 dbSNP
rs540858491 2632 dbSNP
rs902938336 2633 dbSNP
rs1411047941 2635 dbSNP
rs1411185555 2636 dbSNP
rs1369879953 2637 dbSNP
rs941104733 2638 dbSNP
rs747091615 2645 dbSNP
rs1314554185 2648 dbSNP
rs1351384667 2650 dbSNP
rs909718695 2654 dbSNP
rs777951916 2658 dbSNP
rs1041454463 2670 dbSNP
rs1281190818 2675 dbSNP
rs1341672021 2677 dbSNP
rs1242754708 2678 dbSNP
rs985287500 2681 dbSNP
rs932562637 2688 dbSNP
rs933685398 2700 dbSNP
rs184186646 2701 dbSNP
rs763122239 2703 dbSNP
rs1358850219 2708 dbSNP
rs1318138624 2712 dbSNP
rs966739999 2717 dbSNP
rs942935236 2718 dbSNP
rs192020136 2721 dbSNP
rs990001962 2729 dbSNP
rs1413718121 2732 dbSNP
rs775615313 2733 dbSNP
rs1331882729 2739 dbSNP
rs910088238 2741 dbSNP
rs1297038028 2748 dbSNP
rs1401625977 2748 dbSNP
rs1363094205 2749 dbSNP
rs958120166 2751 dbSNP
rs984249060 2753 dbSNP
rs1034283130 2758 dbSNP
rs1459435814 2759 dbSNP
rs1199108488 2763 dbSNP
rs1416452261 2765 dbSNP
rs1188225046 2768 dbSNP
rs1188778123 2771 dbSNP
rs1246923739 2771 dbSNP
rs1002339107 2774 dbSNP
rs1194903517 2775 dbSNP
rs971397505 2780 dbSNP
rs1025216962 2784 dbSNP
rs1170669114 2785 dbSNP
rs951508543 2788 dbSNP
rs1386858002 2790 dbSNP
rs1320104794 2794 dbSNP
rs1386679553 2798 dbSNP
rs748034791 2800 dbSNP
rs1331102867 2801 dbSNP
rs59916934 2801 dbSNP
rs1381283949 2803 dbSNP
rs896852475 2803 dbSNP
rs529401630 2805 dbSNP
rs982131613 2807 dbSNP
rs970771160 2808 dbSNP
rs1211675598 2810 dbSNP
rs1036626295 2812 dbSNP
rs1334257288 2815 dbSNP
rs1005729609 2820 dbSNP
rs1463221349 2821 dbSNP
rs556992705 2828 dbSNP
rs1235198604 2834 dbSNP
rs1050032968 2836 dbSNP
rs932534551 2837 dbSNP
rs1360194316 2839 dbSNP
rs1269794198 2841 dbSNP
rs1024038116 2842 dbSNP
rs1431967741 2843 dbSNP
rs1328519251 2844 dbSNP
rs1012863751 2848 dbSNP
rs201411822 2850 dbSNP
rs1428973999 2852 dbSNP
rs1410051787 2855 dbSNP
rs1463150380 2860 dbSNP
rs1395850639 2866 dbSNP
rs1294252872 2867 dbSNP
rs1385629884 2868 dbSNP
rs1390078552 2868 dbSNP
rs35100577 2868 dbSNP
rs397934469 2868 dbSNP
rs753565922 2868 dbSNP
rs80166899 2868 dbSNP
rs148651668 2869 dbSNP
rs4821188 2869 dbSNP
rs1173633989 2870 dbSNP
rs1483309033 2870 dbSNP
rs1249330994 2871 dbSNP
rs1476337626 2874 dbSNP
rs1172618660 2875 dbSNP
rs1417002968 2877 dbSNP
rs1368073561 2884 dbSNP
rs1456474516 2885 dbSNP
rs1166920424 2886 dbSNP
rs1371713665 2887 dbSNP
rs564202159 2892 dbSNP
rs1243562600 2895 dbSNP
rs185976908 2900 dbSNP
rs1320692121 2902 dbSNP
rs1041007343 2903 dbSNP
rs201784522 2904 dbSNP
rs1342867742 2905 dbSNP
rs1491085601 2906 dbSNP
rs200298559 2906 dbSNP
rs397780396 2906 dbSNP
rs537338958 2906 dbSNP
rs59474281 2906 dbSNP
rs1195498934 2909 dbSNP
rs1422212542 2909 dbSNP
rs1468020101 2910 dbSNP
rs1253524248 2912 dbSNP
rs1215677797 2913 dbSNP
rs1305796854 2915 dbSNP
rs1244492724 2924 dbSNP
rs141372779 2926 dbSNP
rs533140889 2927 dbSNP
rs989474318 2928 dbSNP
rs1377758517 2929 dbSNP
rs1302573875 2931 dbSNP
rs958864427 2934 dbSNP
rs749944717 2935 dbSNP
rs151046973 2938 dbSNP
rs1299236684 2947 dbSNP
rs1032889619 2955 dbSNP
rs1226975552 2958 dbSNP
rs776656193 2961 dbSNP
rs1349890693 2976 dbSNP
rs981257824 2979 dbSNP
rs902990717 2982 dbSNP
rs771054187 2990 dbSNP
rs1482431042 2996 dbSNP
rs970890983 2998 dbSNP
rs1041507285 3004 dbSNP
rs772276503 3008 dbSNP
rs1448974113 3010 dbSNP
rs998326199 3012 dbSNP
rs1397446251 3018 dbSNP
rs1434196091 3020 dbSNP
rs199767833 3024 dbSNP
rs60421663 3024 dbSNP
rs1357772908 3034 dbSNP
rs962243676 3041 dbSNP
rs1322172770 3049 dbSNP
rs1015215357 3051 dbSNP
rs1442508410 3053 dbSNP
rs1294678091 3058 dbSNP
rs1005182361 3062 dbSNP
rs1219723483 3066 dbSNP
rs1352200239 3075 dbSNP
rs111508943 3076 dbSNP
rs1300386106 3088 dbSNP
rs1310189123 3093 dbSNP
rs564524121 3094 dbSNP
rs1410246856 3101 dbSNP
rs544925674 3110 dbSNP
rs1240875139 3111 dbSNP
rs1269038613 3112 dbSNP
rs1431569797 3119 dbSNP
rs1464568220 3120 dbSNP
rs746818771 3121 dbSNP
rs573099776 3125 dbSNP
rs1171579086 3132 dbSNP
rs1039771390 3137 dbSNP
rs551155683 3147 dbSNP
rs151083513 3150 dbSNP
rs1423632876 3156 dbSNP
rs1195367997 3159 dbSNP
rs901035570 3165 dbSNP
rs542461415 3168 dbSNP
rs572982224 3168 dbSNP
rs1456370427 3169 dbSNP
rs1479707612 3173 dbSNP
rs1040872943 3193 dbSNP
rs1205305740 3194 dbSNP
rs1351089931 3201 dbSNP
rs1439836918 3203 dbSNP
rs573382252 3205 dbSNP
rs1437162060 3206 dbSNP
rs945295383 3218 dbSNP
rs142792991 3219 dbSNP
rs369918390 3219 dbSNP
rs1288676254 3229 dbSNP
rs35924321 3229 dbSNP
rs1048592139 3237 dbSNP
rs1234075921 3245 dbSNP
rs556674359 3246 dbSNP
rs1226784029 3257 dbSNP
rs1349004517 3261 dbSNP
rs1054206111 3264 dbSNP
rs536767768 3265 dbSNP
rs1222495674 3277 dbSNP
rs1373238015 3281 dbSNP
rs918731268 3282 dbSNP
rs373768950 3285 dbSNP
rs1251524001 3292 dbSNP
rs574002242 3294 dbSNP
rs1472087085 3299 dbSNP
rs774576560 3303 dbSNP
rs1405470166 3307 dbSNP
rs759790167 3310 dbSNP
rs982240661 3323 dbSNP
rs926615851 3325 dbSNP
rs1411582381 3326 dbSNP
rs1349628891 3328 dbSNP
rs771081659 3328 dbSNP
rs949486021 3337 dbSNP
rs11554253 3342 dbSNP
rs1407721736 3342 dbSNP
rs1286195758 3343 dbSNP
rs202032586 3354 dbSNP
rs916619781 3358 dbSNP
rs747708499 3368 dbSNP
rs1433890782 3372 dbSNP
rs74427469 3375 dbSNP
rs1206465858 3383 dbSNP
rs1032943314 3394 dbSNP
rs978653441 3407 dbSNP
rs967229064 3415 dbSNP
rs1175445789 3417 dbSNP
rs1020118701 3420 dbSNP
rs878879890 3420 dbSNP
rs997981835 3428 dbSNP
rs918101748 3429 dbSNP
rs1407147074 3430 dbSNP
rs538786983 3442 dbSNP
rs557739462 3443 dbSNP
rs1180844791 3451 dbSNP
rs1410978211 3453 dbSNP
rs1431607253 3455 dbSNP
rs1169111239 3457 dbSNP
rs1017981862 3461 dbSNP
rs1427593397 3465 dbSNP
rs985443599 3482 dbSNP
rs1006973588 3494 dbSNP
rs1210379901 3495 dbSNP
rs888083004 3497 dbSNP
rs1486204375 3498 dbSNP
rs1367400647 3499 dbSNP
rs1028394553 3501 dbSNP
rs1297545304 3504 dbSNP
rs1048643633 3505 dbSNP
rs534967481 3510 dbSNP
rs1282993131 3513 dbSNP
rs374074463 3520 dbSNP
rs180848052 3529 dbSNP
rs867984061 3530 dbSNP
rs1240772839 3531 dbSNP
rs1009370504 3534 dbSNP
rs1308298631 3536 dbSNP
rs1389486470 3548 dbSNP
rs949535637 3551 dbSNP
rs1414158215 3553 dbSNP
rs1351744041 3570 dbSNP
rs546800609 3571 dbSNP
rs1291070331 3577 dbSNP
rs771204426 3577 dbSNP
rs1053750587 3580 dbSNP
rs555973800 3583 dbSNP
rs1344718750 3591 dbSNP
rs1413718483 3591 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HEK293S
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in GSM1084064. RNA binding protein: AGO2. Condition:CLIP_noemetine_AbnovaAb HITS-CLIP data was present in GSM1084068. RNA binding protein: AGO2. Condition:CLIP_noemetine_SigmaAb HITS-CLIP data was present in GSM1084069. RNA binding protein: AGO2. Condition:CLIP_emetine_SigmaAb ...

- Karginov FV; Hannon GJ, 2013, Genes & development.

Article - Karginov FV; Hannon GJ
- Genes & development, 2013
When adapting to environmental stress, cells attenuate and reprogram their translational output. In part, these altered translation profiles are established through changes in the interactions between RNA-binding proteins and mRNAs. The Argonaute 2 (Ago2)/microRNA (miRNA) machinery has been shown to participate in stress-induced translational up-regulation of a particular mRNA, CAT-1; however, a detailed, transcriptome-wide understanding of the involvement of Ago2 in the process has been lacking. Here, we profiled the overall changes in Ago2-mRNA interactions upon arsenite stress by cross-linking immunoprecipitation (CLIP) followed by high-throughput sequencing (CLIP-seq). Ago2 displayed a significant remodeling of its transcript occupancy, with the majority of 3' untranslated region (UTR) and coding sequence (CDS) sites exhibiting stronger interaction. Interestingly, target sites that were destined for release from Ago2 upon stress were depleted in miRNA complementarity signatures, suggesting an alternative mode of interaction. To compare the changes in Ago2-binding patterns across transcripts with changes in their translational states, we measured mRNA profiles on ribosome/polysome gradients by RNA sequencing (RNA-seq). Increased Ago2 occupancy correlated with stronger repression of translation for those mRNAs, as evidenced by a shift toward lighter gradient fractions upon stress, while release of Ago2 was associated with the limited number of transcripts that remained translated. Taken together, these data point to a role for Ago2 and the mammalian miRNAs in mediating the translational component of the stress response.
LinkOut: [PMID: 23824327]
CLIP-seq Support 1 for dataset GSM1084064
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_noemetine_AbnovaAb
Location of target site ENST00000339468.3 | 3UTR | CCAAGAUGGGUGGAU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM1084068
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_noemetine_SigmaAb
Location of target site ENST00000339468.3 | 3UTR | AGGCCAAGAUGGGUGGAUCACCUGAGGUCAGGAGUUC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
CLIP-seq Support 3 for dataset GSM1084069
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_emetine_SigmaAb
Location of target site ENST00000339468.3 | 3UTR | CCAAGAUGGGUGGAUCACCUGAGGUCAGGAGU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
GSE38226 Liver fibrosis -0.603 1.9e-3 -0.394 3.9e-2 21 Click to see details
GSE28544 Breast cancer 0.544 3.0e-3 0.440 1.6e-2 24 Click to see details
GSE42095 Differentiated embryonic stem cells -0.305 7.9e-2 0.000 5.0e-1 23 Click to see details
GSE35602 Colorectal cancer stromal tissue -0.262 1.0e-1 -0.095 3.3e-1 25 Click to see details
GSE19536 Breast cancer -0.124 1.1e-1 -0.153 6.4e-2 100 Click to see details
GSE27834 Pluripotent stem cells 0.293 1.4e-1 0.126 3.2e-1 16 Click to see details
GSE19783 ER- ER- breast cancer -0.119 1.5e-1 -0.136 1.2e-1 79 Click to see details
GSE19350 CNS germ cell tumors -0.319 1.6e-1 0.091 3.9e-1 12 Click to see details
GSE17306 Multiple myeloma 0.136 1.8e-1 0.207 7.7e-2 49 Click to see details
GSE17498 Multiple myeloma 0.14 1.9e-1 0.168 1.5e-1 40 Click to see details
GSE34608 Pulmonary tuberculosis and sarcoidosis -0.196 2.0e-1 -0.104 3.3e-1 20 Click to see details
GSE26953 Aortic valvular endothelial cells 0.123 2.8e-1 0.038 4.3e-1 24 Click to see details
GSE21849 B cell lymphoma 0.11 2.9e-1 0.128 2.5e-1 29 Click to see details
GSE28260 Renal cortex and medulla 0.157 3.0e-1 0.155 3.1e-1 13 Click to see details
GSE38974 Chronic obstructive pulmonary disease 0.094 3.3e-1 0.091 3.3e-1 25 Click to see details
GSE14794 Lymphoblastoid cells -0.042 3.5e-1 -0.057 3.0e-1 90 Click to see details
GSE21687 Ependynoma primary tumors 0.038 3.8e-1 0.030 4.1e-1 64 Click to see details
GSE32688 Pancreatic cancer 0.04 4.1e-1 -0.196 1.4e-1 32 Click to see details
GSE19783 ER+ ER+ breast cancer -0.005 4.9e-1 -0.063 4.0e-1 20 Click to see details
GSE19783 ER+ ER+ breast cancer -0.005 4.9e-1 -0.063 4.0e-1 20 Click to see details
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
194 hsa-miR-640 Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT097121 TNPO1 transportin 1 2 2
MIRT115090 ARIH1 ariadne RBR E3 ubiquitin protein ligase 1 2 4
MIRT204603 HSPE1-MOB4 HSPE1-MOB4 readthrough 2 8
MIRT204634 MOB4 MOB family member 4, phocein 2 8
MIRT344451 MTRNR2L1 MT-RNR2-like 1 2 2
MIRT405772 EIF5 eukaryotic translation initiation factor 5 2 2
MIRT445876 SENP6 SUMO1/sentrin specific peptidase 6 2 2
MIRT497418 FAM46A family with sequence similarity 46 member A 2 2
MIRT504394 HMX2 H6 family homeobox 2 2 4
MIRT504691 SLCO2B1 solute carrier organic anion transporter family member 2B1 2 8
MIRT512386 MTRNR2L3 MT-RNR2-like 3 2 6
MIRT513003 MAN1A2 mannosidase alpha class 1A member 2 2 2
MIRT513084 USP9X ubiquitin specific peptidase 9, X-linked 2 2
MIRT519122 ALDH2 aldehyde dehydrogenase 2 family (mitochondrial) 2 2
MIRT523836 F2RL1 F2R like trypsin receptor 1 2 2
MIRT565356 TMCC1 transmembrane and coiled-coil domain family 1 2 2
MIRT575895 Dis3 DIS3 homolog, exosome endoribonuclease and 3'-5' exoribonuclease 2 3
MIRT576894 Poteg POTE ankyrin domain family, member G 2 2
MIRT613780 RPS6 ribosomal protein S6 2 2
MIRT613934 POLR3A RNA polymerase III subunit A 2 2
MIRT614348 LOH12CR1 BLOC-1 related complex subunit 5 2 2
MIRT614534 NOA1 nitric oxide associated 1 2 2
MIRT617019 ZBTB8B zinc finger and BTB domain containing 8B 2 2
MIRT618247 MANEAL mannosidase endo-alpha like 2 2
MIRT619051 TTC4 tetratricopeptide repeat domain 4 2 2
MIRT619442 ZNF517 zinc finger protein 517 2 2
MIRT619723 FPR2 formyl peptide receptor 2 2 2
MIRT620179 TRIM72 tripartite motif containing 72 2 2
MIRT620370 ANKRD62 ankyrin repeat domain 62 2 2
MIRT621263 RTN2 reticulon 2 2 2
MIRT621463 APOH apolipoprotein H 2 2
MIRT621571 ZBTB43 zinc finger and BTB domain containing 43 2 2
MIRT621683 TSPYL1 TSPY like 1 2 2
MIRT622866 PDE7A phosphodiesterase 7A 2 2
MIRT624669 ARHGEF39 Rho guanine nucleotide exchange factor 39 2 2
MIRT625607 ZNF84 zinc finger protein 84 2 2
MIRT626111 IL23R interleukin 23 receptor 2 2
MIRT628380 CACNB2 calcium voltage-gated channel auxiliary subunit beta 2 2 2
MIRT628553 MELK maternal embryonic leucine zipper kinase 2 2
MIRT628671 C2orf72 chromosome 2 open reading frame 72 2 2
MIRT628747 TRPV2 transient receptor potential cation channel subfamily V member 2 2 2
MIRT628776 TMEM154 transmembrane protein 154 2 2
MIRT628918 ZNF430 zinc finger protein 430 2 2
MIRT629174 ALDOA aldolase, fructose-bisphosphate A 2 2
MIRT629209 C12orf66 chromosome 12 open reading frame 66 2 2
MIRT629267 SLC5A8 solute carrier family 5 member 8 2 2
MIRT629498 AS3MT arsenite methyltransferase 2 2
MIRT629665 USP1 ubiquitin specific peptidase 1 2 2
MIRT629760 STK25 serine/threonine kinase 25 2 2
MIRT630899 GATAD1 GATA zinc finger domain containing 1 2 2
MIRT631105 SLC15A2 solute carrier family 15 member 2 2 2
MIRT631112 ATCAY ATCAY, caytaxin 2 2
MIRT631450 DLEU1 deleted in lymphocytic leukemia 1 (non-protein coding) 2 2
MIRT631505 FFAR4 free fatty acid receptor 4 2 2
MIRT631580 ITGAL integrin subunit alpha L 2 2
MIRT631836 CMBL carboxymethylenebutenolidase homolog 2 2
MIRT632342 SWSAP1 SWIM-type zinc finger 7 associated protein 1 2 2
MIRT633214 ZNF584 zinc finger protein 584 2 2
MIRT633223 ZNF43 zinc finger protein 43 2 2
MIRT633480 ARIH2OS ariadne RBR E3 ubiquitin protein ligase 2 opposite strand 2 2
MIRT633511 LRRC27 leucine rich repeat containing 27 2 2
MIRT633615 CWF19L1 CWF19 like 1, cell cycle control (S. pombe) 2 2
MIRT633652 SLC28A1 solute carrier family 28 member 1 2 2
MIRT633677 ZNF576 zinc finger protein 576 2 2
MIRT634196 TMOD2 tropomodulin 2 2 4
MIRT634388 PLSCR1 phospholipid scramblase 1 2 2
MIRT635817 OPA3 OPA3, outer mitochondrial membrane lipid metabolism regulator 2 2
MIRT635962 TTC31 tetratricopeptide repeat domain 31 2 2
MIRT636114 YPEL1 yippee like 1 2 2
MIRT636164 TIMM8A translocase of inner mitochondrial membrane 8A 2 2
MIRT636768 CLUAP1 clusterin associated protein 1 2 2
MIRT637092 CXorf23 BCLAF1 and THRAP3 family member 3 2 2
MIRT637316 FAM9B family with sequence similarity 9 member B 2 2
MIRT637540 CHST6 carbohydrate sulfotransferase 6 2 2
MIRT637628 ZNF431 zinc finger protein 431 2 2
MIRT637826 CACNG8 calcium voltage-gated channel auxiliary subunit gamma 8 2 2
MIRT637945 IVD isovaleryl-CoA dehydrogenase 2 2
MIRT637968 IRF1 interferon regulatory factor 1 2 2
MIRT638321 RNF11 ring finger protein 11 2 2
MIRT638386 RAB11FIP1 RAB11 family interacting protein 1 2 2
MIRT639244 CRK CRK proto-oncogene, adaptor protein 2 2
MIRT642608 APOPT1 apoptogenic 1, mitochondrial 2 2
MIRT642793 SLC1A5 solute carrier family 1 member 5 2 2
MIRT643847 LACTB lactamase beta 2 4
MIRT644705 ZNF321P zinc finger protein 321, pseudogene 2 2
MIRT645148 DIS3 DIS3 homolog, exosome endoribonuclease and 3'-5' exoribonuclease 2 3
MIRT646671 CCDC69 coiled-coil domain containing 69 2 2
MIRT647780 ASB8 ankyrin repeat and SOCS box containing 8 2 2
MIRT648554 WDR92 WD repeat domain 92 2 2
MIRT648990 MRPL49 mitochondrial ribosomal protein L49 2 2
MIRT649099 KCNMB1 potassium calcium-activated channel subfamily M regulatory beta subunit 1 2 2
MIRT650141 ZNF426 zinc finger protein 426 2 2
MIRT650791 GSR glutathione-disulfide reductase 2 2
MIRT654967 PLEKHA2 pleckstrin homology domain containing A2 2 2
MIRT655099 PHLDA3 pleckstrin homology like domain family A member 3 2 2
MIRT655516 PAG1 phosphoprotein membrane anchor with glycosphingolipid microdomains 1 2 2
MIRT656289 METTL14 methyltransferase like 14 2 2
MIRT656497 MAP3K9 mitogen-activated protein kinase kinase kinase 9 2 2
MIRT657074 JPH2 junctophilin 2 2 2
MIRT657314 HOOK3 hook microtubule tethering protein 3 2 2
MIRT657419 HIF1AN hypoxia inducible factor 1 alpha subunit inhibitor 2 4
MIRT659032 DHTKD1 dehydrogenase E1 and transketolase domain containing 1 2 2
MIRT659535 CHCHD5 coiled-coil-helix-coiled-coil-helix domain containing 5 2 2
MIRT661532 NWD1 NACHT and WD repeat domain containing 1 2 2
MIRT662029 FUT2 fucosyltransferase 2 2 2
MIRT663206 DARS2 aspartyl-tRNA synthetase 2, mitochondrial 2 2
MIRT663357 ORAI2 ORAI calcium release-activated calcium modulator 2 2 2
MIRT663557 CCR6 C-C motif chemokine receptor 6 2 2
MIRT663650 POLM DNA polymerase mu 2 2
MIRT663694 ABHD17B abhydrolase domain containing 17B 2 2
MIRT664370 CYB5A cytochrome b5 type A 2 2
MIRT664783 LIAS lipoic acid synthetase 2 4
MIRT665561 TXNL1 thioredoxin like 1 2 2
MIRT665950 TAOK1 TAO kinase 1 2 2
MIRT667338 MSANTD3 Myb/SANT DNA binding domain containing 3 2 2
MIRT667804 ITIH5 inter-alpha-trypsin inhibitor heavy chain family member 5 2 2
MIRT668804 CYP20A1 cytochrome P450 family 20 subfamily A member 1 2 2
MIRT669470 ARPC2 actin related protein 2/3 complex subunit 2 2 2
MIRT669599 AGO3 argonaute 3, RISC catalytic component 2 2
MIRT669806 STOML1 stomatin like 1 2 2
MIRT669944 FBXL2 F-box and leucine rich repeat protein 2 2 2
MIRT670292 RBBP4 RB binding protein 4, chromatin remodeling factor 2 2
MIRT670381 EMP2 epithelial membrane protein 2 2 2
MIRT670481 DCUN1D2 defective in cullin neddylation 1 domain containing 2 2 2
MIRT670531 KIF1C kinesin family member 1C 2 4
MIRT670565 GLTP glycolipid transfer protein 2 2
MIRT670603 NPHP1 nephrocystin 1 2 2
MIRT670880 CYTIP cytohesin 1 interacting protein 2 2
MIRT670931 LIPG lipase G, endothelial type 2 2
MIRT671261 MTRNR2L5 MT-RNR2-like 5 2 2
MIRT671794 FLVCR1 feline leukemia virus subgroup C cellular receptor 1 2 2
MIRT671897 GBP4 guanylate binding protein 4 2 2
MIRT672000 SLC35F6 solute carrier family 35 member F6 2 4
MIRT672074 KIR3DX1 killer cell immunoglobulin like receptor, three Ig domains X1 2 2
MIRT672319 C9orf3 chromosome 9 open reading frame 3 2 2
MIRT672853 C22orf29 retrotransposon Gag like 10 2 2
MIRT673395 WNT7B Wnt family member 7B 2 2
MIRT673537 DEGS1 delta 4-desaturase, sphingolipid 1 2 2
MIRT674285 ZNF724P zinc finger protein 724 2 2
MIRT674494 TIRAP TIR domain containing adaptor protein 2 2
MIRT675460 NUBPL nucleotide binding protein like 2 2
MIRT675569 TRIP11 thyroid hormone receptor interactor 11 2 2
MIRT676068 TIMM50 translocase of inner mitochondrial membrane 50 2 2
MIRT676254 PBOV1 prostate and breast cancer overexpressed 1 2 2
MIRT676377 SEC24D SEC24 homolog D, COPII coat complex component 2 2
MIRT676758 SNX2 sorting nexin 2 2 2
MIRT676773 NPHS1 NPHS1, nephrin 2 2
MIRT676874 ENSA endosulfine alpha 2 2
MIRT676918 KLHDC8A kelch domain containing 8A 2 2
MIRT676944 S1PR3 sphingosine-1-phosphate receptor 3 2 2
MIRT676957 HFE hemochromatosis 2 2
MIRT676967 RNF19B ring finger protein 19B 2 2
MIRT676972 ZNF708 zinc finger protein 708 2 2
MIRT677042 ZNF34 zinc finger protein 34 2 2
MIRT677070 VMAC vimentin type intermediate filament associated coiled-coil protein 2 2
MIRT677093 MFSD11 major facilitator superfamily domain containing 11 2 4
MIRT677134 P2RX7 purinergic receptor P2X 7 2 2
MIRT677179 ZNF786 zinc finger protein 786 2 2
MIRT677228 C15orf40 chromosome 15 open reading frame 40 2 2
MIRT677320 PIGO phosphatidylinositol glycan anchor biosynthesis class O 2 2
MIRT677455 PDLIM3 PDZ and LIM domain 3 2 2
MIRT677809 MRPS10 mitochondrial ribosomal protein S10 2 2
MIRT677937 ZNF519 zinc finger protein 519 2 2
MIRT678063 UBN2 ubinuclein 2 2 4
MIRT678072 EIF2A eukaryotic translation initiation factor 2A 2 2
MIRT678252 FXN frataxin 2 2
MIRT678315 FBLIM1 filamin binding LIM protein 1 2 2
MIRT678367 XIAP X-linked inhibitor of apoptosis 2 4
MIRT678372 RNF115 ring finger protein 115 2 2
MIRT678410 ANKRD36 ankyrin repeat domain 36 2 2
MIRT678518 ZNF347 zinc finger protein 347 2 2
MIRT678566 CDK4 cyclin dependent kinase 4 2 2
MIRT678580 PPP1R3B protein phosphatase 1 regulatory subunit 3B 2 2
MIRT678820 PDE6A phosphodiesterase 6A 2 2
MIRT678917 XPOT exportin for tRNA 2 2
MIRT679217 MAN2A2 mannosidase alpha class 2A member 2 2 2
MIRT679437 C19orf52 translocase of inner mitochondrial membrane 29 2 2
MIRT679595 HILPDA hypoxia inducible lipid droplet associated 2 2
MIRT679755 TLR6 toll like receptor 6 2 2
MIRT679800 APOBEC3A apolipoprotein B mRNA editing enzyme catalytic subunit 3A 2 2
MIRT680057 CD96 CD96 molecule 2 2
MIRT680116 CCDC30 coiled-coil domain containing 30 2 4
MIRT680181 ZNF554 zinc finger protein 554 2 2
MIRT680439 WDR12 WD repeat domain 12 2 2
MIRT680789 ZNF578 zinc finger protein 578 2 2
MIRT692464 APEX2 apurinic/apyrimidinic endodeoxyribonuclease 2 2 2
MIRT702952 HIP1 huntingtin interacting protein 1 2 2
MIRT706016 ZSCAN2 zinc finger and SCAN domain containing 2 2 2
MIRT706032 F2R coagulation factor II thrombin receptor 2 2
MIRT706135 MTRNR2L10 MT-RNR2-like 10 2 2
MIRT706394 HAS2 hyaluronan synthase 2 2 2
MIRT713293 DCP2 decapping mRNA 2 2 2
MIRT716583 BRAP BRCA1 associated protein 2 2
MIRT720433 C19orf47 chromosome 19 open reading frame 47 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-640 Paclitaxel 36314 NSC125973 approved resistant High Ovarian Cancer tissue and cell line (SKOV3)
hsa-miR-640 Cetuximab resistant High Colon Cancer cell line
hsa-miR-640 Trametinib 11707110 NSC758246 approved resistant High Melanoma cell line (WM266) (1uM)
hsa-miR-640 Vemurafenib 42611257 NSC761431 approved resistant High Melanoma cell line (WM266) (1uM)
hsa-miR-640 Mitoxantrone 4212 NSC279836 approved resistant High Breast Cancer cell line (BT-20, BT-474, BT-549, CAMA-1, HCC1143, HCC1395, HCC1569, HCC1806, HCC-1937, HCC1954, HCC202, HCC38, HCC70, Hs578T, MCF-7, MDA-MB-175VII, MDA-MB-231, MDA-MB-361, MDA-MB-415, MDA-MB-436, MDA-MB-468, SKBR3, T47D, UACC812, EVSA-T, MPE-600 , SK-BR-
hsa-miR-640 Sorafenib 216239 NSC747971 approved sensitive Low Clear Cell Renal Cell Carcinoma cell line (786-O)
hsa-mir-640 Paclitaxel 36314 NSC125973 approved sensitive cell line (A2780)
hsa-mir-640 Cisplatin 5460033 NSC119875 approved sensitive cell line (A2780)
hsa-mir-640 Cisplatin 5460033 NSC119875 approved resistant cell line (BxPC3)
hsa-miR-640 Sunitinib 5329102 NSC750690 approved resistant tissue (CardB)
hsa-miR-640 Paclitaxel 36314 NSC125973 approved sensitive cell line (SKOV3)
hsa-miR-640 Tamoxifen 2733525 NSC180973 approved sensitive cell line (TamR8)
hsa-miR-640 Oxaliplatin 6857599 NSC266046 approved sensitive cell line (IGROV-1)
hsa-miR-640 Cisplatin 5460033 NSC119875 approved sensitive cell line (IGROV-1)
hsa-miR-640 Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)

Error report submission