pre-miRNA Information
pre-miRNA hsa-mir-6769b   
Genomic Coordinates chr1: 206474803 - 206474864
Description Homo sapiens miR-6769b stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-6769b-3p
Sequence 42| CCCUCUCUGUCCCACCCAUAG |62
Evidence Experimental
Experiments Meta-analysis
DRVs in miRNA
Mutant ID Mutant Position Mutant Source
COSN26671848 9 COSMIC
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs555627187 3 dbSNP
rs782102173 4 dbSNP
rs201952639 7 dbSNP
rs782001154 9 dbSNP
rs1488064450 15 dbSNP
rs782111367 16 dbSNP
rs370859899 18 dbSNP
rs1305197911 19 dbSNP
Putative Targets

Gene Information
Gene Symbol GDAP1L1   
Synonyms dJ881L22.1, dJ995J12.1.1
Description ganglioside induced differentiation associated protein 1 like 1
Transcript NM_024034   
Expression
Putative miRNA Targets on GDAP1L1
3'UTR of GDAP1L1
(miRNA target sites are highlighted)
>GDAP1L1|NM_024034|3'UTR
   1 GGCCAGGCCTGGGGCTTGGTGTCTGACTGTCGGTGTCTCTGTGCTGTGTGATTCCCCGTGAGCTCTCAGTAACTCACTGT
  81 CTCATGAACACTTGGACAGCCCTCCCCGCCCTTCGTTCTGAGTAATAATACCGTCAGTGTGAAAACATTCCGTAGTTTAG
 161 AAGTAGACGTTGCCAATGCTGTGACTCAAGGCCACGGCTCTACTAAAAGAGAGAGAGGAAGCGAGAGAGAGAGAGAAAAA
 241 ACAAAAAACAGAAAACACGAATGCCTTTTCTATCGATTCAAGGTCTCAAGATGGAACTGTGGAGACTGGTTAGGATCTGA
 321 GGTGAGTCCCAGGATGTTTCGTCCACCAGGGCCCAGATTCTGGGAGGTGCTGGGGACTCAGAGGGCCTGACCCCTCACCT
 401 CCCCTTCCCTCTTGCCCAGGGAACTCTTCCACAGGACAAAGCCGACATCAAGACTCAACTCCTCTAACCGGTACCTCTGA
 481 ATGGGGCTGGATAACCGGAGACCCCATGGGAGGTCCCTGAAGATCAGAAGGGGCTTCACGCTTCTCCTGGACATGGACTA
 561 GCTTGAGCCAAGGCAGTGGCACCCAAAAACCAGGCTGCAGTGGGGACGGATACCATGAGCACACCCTCTCATTGTCCTTC
 641 TGATTTGGTCCATGTGTTGGGTTTGGCCTTAGTAGAAATCTCTGAAGGCAGCAGCCATCATCCTCTTCCTACCTTGAGTT
 721 TTTCTACCCTGTGAGGTGGGACTTTCAGTAAAAGCCATGTTGACCCTCTCTCAGAAGGTCAGTCCAGCCCAAGTGCAGGG
 801 GCGGATCTGGAGGTGGACAAACCTAGGTCCCCCTCCTAGCCTCTGTCCAAGCCATCTCCTTCAATATCCCCCCCTTCCTG
 881 TCACTCCCGGGGCTGTCCCTGTACTACACGGTGCCATGGAGCCGGGGAGAGCGGGGAAGTCTCTGCATCCATGCCACCCA
 961 CCCCAGTCGGGTCTCACTTTCCTGTGCCTTTTGCATGTTGGGAAAGGGTCTTGGTGTCACTGCCGCTCATGCATAGAAAC
1041 CACCAAAAGCCCCAATAAAGCATCCAGGAGGAACAGTTGCTTTTCATTTCTAAACCTGTGCTGTCCATCTAGTTCTCATT
1121 GCCAAGTGCTGGAGCCAGAAGGGTAGAGATGTGAGGTTTCAGTCTCAGTTCTTCACAAGAGCAAGCAAGAGTTGACTGCC
1201 TGTCTCAAGTTGCTGGGTCTGGGGCTGGCTTCCAGACTGACTTTCCAGGGCTCTGACCTTAACATCAACCCAGCTCATTT
1281 AGGCTCAGCCCTTTACAGGTTACAGGGCATGTGTACAACCCTTTGTTCTCATTAACCTGTGCAAGGGCCAGGTGTAGTGA
1361 CTCATATTTATAATCCCAGTGCTTTGGGAGGCCAAGGCGGGAGAATTGCTCCAGGCCAGGAGTTCAAGACAAGCCTGGGC
1441 AATATAGCGAGACCCCATCTCTAGAAAATAAAATAAAATAAACCTATATATGGACCTCAGGGGGCACCCAGGGCACATGC
1521 CCCCCACCCCAATTTCCCAGAGGGAAAAATGTATTTAAAATGCCCAAAGAACATTAAATCAGGAGTATAATGTGTAGAAT
1601 ATAAGGCATGGTTTTAC
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' gauacccaccCUGUCUCUCCc 5'
                    || ||||||| 
Target 5' tctactaaaaGAGAGAGAGGa 3'
199 - 219 147.00 -13.20
2
miRNA  3' gaUACC-CACCCUGUCUCUCCc 5'
            |||| |  ||: |||| || 
Target 5' ccATGGAGCCGGGGAGAGCGGg 3'
914 - 935 127.00 -20.10
3
miRNA  3' gaUACCCACCCU--GUCUCUCcc 5'
            :||   ||||  |||||:|  
Target 5' agGTGCTGGGGACTCAGAGGGcc 3'
365 - 387 121.00 -22.00
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN30177831 4 COSMIC
COSN31613658 4 COSMIC
COSN30473281 12 COSMIC
COSN31501581 47 COSMIC
COSN30139838 49 COSMIC
COSN28683874 57 COSMIC
COSN30108348 59 COSMIC
COSN28887026 63 COSMIC
COSN30516416 84 COSMIC
COSN31532905 108 COSMIC
COSN16589939 111 COSMIC
COSN13863366 132 COSMIC
COSN30119547 136 COSMIC
COSN31533235 169 COSMIC
COSN31483784 174 COSMIC
COSN30590147 209 COSMIC
COSN7093676 235 COSMIC
COSN19370771 236 COSMIC
COSN30123042 238 COSMIC
COSN31550189 242 COSMIC
COSN31575978 242 COSMIC
COSN30171350 249 COSMIC
COSN31588993 259 COSMIC
COSM8856797 276 COSMIC
COSM8991668 288 COSMIC
COSM7248405 313 COSMIC
COSM8501121 320 COSMIC
COSN30580467 333 COSMIC
COSN4893128 334 COSMIC
COSN20079714 374 COSMIC
COSM9065142 438 COSMIC
COSM5957912 443 COSMIC
COSM3963589 445 COSMIC
COSM6500640 449 COSMIC
COSM4001910 454 COSMIC
COSN13863374 499 COSMIC
COSN30683811 556 COSMIC
COSN15668413 867 COSMIC
COSN31539948 868 COSMIC
COSN27072830 869 COSMIC
COSN31543599 1011 COSMIC
COSN5802587 1032 COSMIC
COSN30541704 1047 COSMIC
COSN8610983 1169 COSMIC
COSN22364189 1177 COSMIC
COSN5444490 1470 COSMIC
COSN31967647 1545 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs756731074 1 dbSNP
rs1376339351 3 dbSNP
rs371578616 5 dbSNP
rs1289519375 6 dbSNP
rs561095097 8 dbSNP
rs765216745 11 dbSNP
rs376912517 12 dbSNP
rs1040440004 13 dbSNP
rs921922377 17 dbSNP
rs758234465 19 dbSNP
rs1454329650 20 dbSNP
rs780041338 22 dbSNP
rs993306548 28 dbSNP
rs370292371 29 dbSNP
rs373706129 30 dbSNP
rs781287612 32 dbSNP
rs373336638 33 dbSNP
rs769798996 34 dbSNP
rs773681408 44 dbSNP
rs1007463202 45 dbSNP
rs1440525278 45 dbSNP
rs1398955030 49 dbSNP
rs932085510 50 dbSNP
rs763926162 51 dbSNP
rs1018314263 53 dbSNP
rs1043850966 58 dbSNP
rs1353001085 59 dbSNP
rs1451446631 72 dbSNP
rs529957739 86 dbSNP
rs1327655231 90 dbSNP
rs751911928 91 dbSNP
rs1283876838 92 dbSNP
rs903906764 98 dbSNP
rs1342711171 100 dbSNP
rs964381989 106 dbSNP
rs148171860 108 dbSNP
rs1000963440 109 dbSNP
rs563552581 110 dbSNP
rs532177970 115 dbSNP
rs1471680315 116 dbSNP
rs868584778 132 dbSNP
rs988299580 133 dbSNP
rs183477102 134 dbSNP
rs1013448325 140 dbSNP
rs1317638052 152 dbSNP
rs150099563 153 dbSNP
rs1274170464 159 dbSNP
rs926317632 164 dbSNP
rs969007615 169 dbSNP
rs1294300408 170 dbSNP
rs995111517 177 dbSNP
rs1212396643 188 dbSNP
rs750453825 190 dbSNP
rs1339058738 196 dbSNP
rs1300627828 197 dbSNP
rs1432280875 198 dbSNP
rs12479863 203 dbSNP
rs1163561533 205 dbSNP
rs62205997 209 dbSNP
rs1165405760 211 dbSNP
rs1470558195 211 dbSNP
rs117524478 216 dbSNP
rs984028647 219 dbSNP
rs1421355306 223 dbSNP
rs146884120 223 dbSNP
rs1486227616 223 dbSNP
rs918981219 224 dbSNP
rs1219568763 227 dbSNP
rs112865364 230 dbSNP
rs929026118 234 dbSNP
rs749844166 236 dbSNP
rs773363915 236 dbSNP
rs771273435 238 dbSNP
rs1377362818 240 dbSNP
rs1243847528 243 dbSNP
rs1361957747 244 dbSNP
rs774764047 248 dbSNP
rs560486378 251 dbSNP
rs1230273342 254 dbSNP
rs1273818842 257 dbSNP
rs1457380022 258 dbSNP
rs755560832 259 dbSNP
rs1240643669 260 dbSNP
rs763743716 261 dbSNP
rs1187341533 265 dbSNP
rs1397919675 266 dbSNP
rs776169775 275 dbSNP
rs1473550466 276 dbSNP
rs890290019 282 dbSNP
rs761344936 288 dbSNP
rs781658516 292 dbSNP
rs567813919 298 dbSNP
rs536572894 299 dbSNP
rs1395408869 301 dbSNP
rs371717170 302 dbSNP
rs1342046765 305 dbSNP
rs748531276 306 dbSNP
rs528005604 310 dbSNP
rs1294195776 311 dbSNP
rs1317369645 313 dbSNP
rs766268727 316 dbSNP
rs1032333707 317 dbSNP
rs868699825 318 dbSNP
rs1260526271 321 dbSNP
rs1231401631 327 dbSNP
rs556470649 328 dbSNP
rs570000586 329 dbSNP
rs538690355 330 dbSNP
rs1444555310 331 dbSNP
rs1188218910 334 dbSNP
rs1303674210 336 dbSNP
rs1262074674 340 dbSNP
rs752906331 341 dbSNP
rs549668556 342 dbSNP
rs867808001 345 dbSNP
rs1465425862 347 dbSNP
rs558863615 348 dbSNP
rs970836484 351 dbSNP
rs1404067615 352 dbSNP
rs1435176385 353 dbSNP
rs1313678888 355 dbSNP
rs572455060 361 dbSNP
rs541478433 367 dbSNP
rs1280126087 370 dbSNP
rs769613890 371 dbSNP
rs1233085202 372 dbSNP
rs771361391 373 dbSNP
rs1254833028 376 dbSNP
rs1347544239 378 dbSNP
rs1212114169 381 dbSNP
rs779405393 384 dbSNP
rs1487082620 385 dbSNP
rs1195402781 390 dbSNP
rs1305259211 390 dbSNP
rs201172970 391 dbSNP
rs1178187179 393 dbSNP
rs1261743255 399 dbSNP
rs1432151422 403 dbSNP
rs1196661545 404 dbSNP
rs1388582926 406 dbSNP
rs8122232 409 dbSNP
rs1435078789 412 dbSNP
rs1253039802 415 dbSNP
rs1157773297 421 dbSNP
rs8116091 424 dbSNP
rs1358421562 425 dbSNP
rs1418018178 431 dbSNP
rs1290864984 435 dbSNP
rs1483150472 436 dbSNP
rs574603419 444 dbSNP
rs8121845 445 dbSNP
rs973507386 452 dbSNP
rs62205998 454 dbSNP
rs1235710694 455 dbSNP
rs929078455 460 dbSNP
rs1333645542 463 dbSNP
rs563614173 470 dbSNP
rs532446451 471 dbSNP
rs1261016876 473 dbSNP
rs8122277 475 dbSNP
rs1487855076 485 dbSNP
rs1207600685 491 dbSNP
rs545819390 492 dbSNP
rs1454627951 496 dbSNP
rs1416545099 497 dbSNP
rs943155687 498 dbSNP
rs1378183386 509 dbSNP
rs559262156 511 dbSNP
rs778686602 512 dbSNP
rs1417991633 520 dbSNP
rs528190582 529 dbSNP
rs1160195923 540 dbSNP
rs979465282 541 dbSNP
rs904408078 549 dbSNP
rs1254526778 552 dbSNP
rs935917333 553 dbSNP
rs375693248 554 dbSNP
rs142769255 555 dbSNP
rs568044300 581 dbSNP
rs1215236210 591 dbSNP
rs1416034282 593 dbSNP
rs1262107526 598 dbSNP
rs1239330086 599 dbSNP
rs1313121797 600 dbSNP
rs1291240414 608 dbSNP
rs8121976 609 dbSNP
rs917969850 618 dbSNP
rs1297547299 621 dbSNP
rs1272266286 622 dbSNP
rs949235877 626 dbSNP
rs1387309315 632 dbSNP
rs1289609589 637 dbSNP
rs1002755448 641 dbSNP
rs1416093889 650 dbSNP
rs1033839244 654 dbSNP
rs745367555 666 dbSNP
rs771654314 674 dbSNP
rs973677315 692 dbSNP
rs556477529 700 dbSNP
rs1444718696 701 dbSNP
rs115589314 704 dbSNP
rs1205310475 706 dbSNP
rs1487966382 708 dbSNP
rs1270936413 709 dbSNP
rs1234869611 712 dbSNP
rs1257157980 725 dbSNP
rs1335310398 731 dbSNP
rs188882399 734 dbSNP
rs193124418 746 dbSNP
rs775383962 750 dbSNP
rs1185201588 773 dbSNP
rs950327278 773 dbSNP
rs566033886 779 dbSNP
rs1328223784 786 dbSNP
rs184321536 795 dbSNP
rs188295703 803 dbSNP
rs1019380459 804 dbSNP
rs1476689637 813 dbSNP
rs1374241602 814 dbSNP
rs1185874857 824 dbSNP
rs943227318 825 dbSNP
rs1432133369 828 dbSNP
rs975007795 830 dbSNP
rs1215237650 831 dbSNP
rs368593121 837 dbSNP
rs1436119909 840 dbSNP
rs935952320 852 dbSNP
rs1052934984 859 dbSNP
rs892470725 868 dbSNP
rs1232587684 869 dbSNP
rs8122493 870 dbSNP
rs1441918754 871 dbSNP
rs1412372071 873 dbSNP
rs531891547 874 dbSNP
rs1029160701 875 dbSNP
rs577220105 889 dbSNP
rs899323431 890 dbSNP
rs1195041722 891 dbSNP
rs1001111663 893 dbSNP
rs1373821914 896 dbSNP
rs546044749 899 dbSNP
rs559108208 902 dbSNP
rs572826836 910 dbSNP
rs550095801 911 dbSNP
rs988517172 912 dbSNP
rs761723404 916 dbSNP
rs1345732131 917 dbSNP
rs918018354 924 dbSNP
rs1207148869 925 dbSNP
rs1018606775 933 dbSNP
rs1278041945 934 dbSNP
rs964859743 935 dbSNP
rs113213745 937 dbSNP
rs1334017913 941 dbSNP
rs1285152366 947 dbSNP
rs1447371918 949 dbSNP
rs974513223 950 dbSNP
rs191584569 952 dbSNP
rs1246181430 954 dbSNP
rs1174999228 957 dbSNP
rs553270910 957 dbSNP
rs925787621 962 dbSNP
rs1193762250 964 dbSNP
rs41282024 965 dbSNP
rs1393990051 967 dbSNP
rs957189316 969 dbSNP
rs541448342 981 dbSNP
rs1484660478 990 dbSNP
rs765371152 996 dbSNP
rs926450892 1012 dbSNP
rs949958465 1020 dbSNP
rs1282405941 1025 dbSNP
rs3810511 1026 dbSNP
rs1284007947 1027 dbSNP
rs1231943952 1030 dbSNP
rs530520489 1032 dbSNP
rs908432855 1037 dbSNP
rs138084671 1051 dbSNP
rs1318940251 1056 dbSNP
rs563504516 1057 dbSNP
rs1397379140 1059 dbSNP
rs762915586 1064 dbSNP
rs899330458 1074 dbSNP
rs1474124392 1075 dbSNP
rs766514652 1076 dbSNP
rs1419933126 1078 dbSNP
rs994979621 1080 dbSNP
rs1485551223 1107 dbSNP
rs1240433528 1111 dbSNP
rs996587904 1116 dbSNP
rs1050611859 1120 dbSNP
rs1447822261 1121 dbSNP
rs751724935 1131 dbSNP
rs532685654 1132 dbSNP
rs1241193701 1138 dbSNP
rs538326798 1141 dbSNP
rs1294432630 1143 dbSNP
rs1001417310 1162 dbSNP
rs1032606997 1166 dbSNP
rs1009152779 1170 dbSNP
rs957143921 1172 dbSNP
rs1350216184 1173 dbSNP
rs753100248 1182 dbSNP
rs1345381943 1185 dbSNP
rs184146482 1187 dbSNP
rs768954302 1190 dbSNP
rs1024930209 1192 dbSNP
rs1396430002 1193 dbSNP
rs970821506 1206 dbSNP
rs756569881 1207 dbSNP
rs926483754 1209 dbSNP
rs563444814 1215 dbSNP
rs778399823 1215 dbSNP
rs566227119 1217 dbSNP
rs745584200 1219 dbSNP
rs984334543 1224 dbSNP
rs1475806968 1229 dbSNP
rs971326355 1250 dbSNP
rs981316212 1251 dbSNP
rs1470063499 1252 dbSNP
rs535056556 1262 dbSNP
rs927961973 1265 dbSNP
rs1204375765 1267 dbSNP
rs1306242361 1268 dbSNP
rs1183347835 1275 dbSNP
rs1275767268 1279 dbSNP
rs937987000 1280 dbSNP
rs1215805694 1284 dbSNP
rs1055634790 1313 dbSNP
rs1302162351 1317 dbSNP
rs920659509 1321 dbSNP
rs930699830 1322 dbSNP
rs1326360980 1326 dbSNP
rs1157449096 1343 dbSNP
rs548287003 1348 dbSNP
rs1047946005 1363 dbSNP
rs758008484 1365 dbSNP
rs1172528112 1370 dbSNP
rs1009164063 1375 dbSNP
rs1394574110 1376 dbSNP
rs1040592658 1387 dbSNP
rs1455774100 1389 dbSNP
rs908456265 1391 dbSNP
rs939928313 1393 dbSNP
rs568571492 1394 dbSNP
rs1040747600 1399 dbSNP
rs537503465 1400 dbSNP
rs557208369 1407 dbSNP
rs1342167299 1410 dbSNP
rs1389203582 1416 dbSNP
rs1279030834 1424 dbSNP
rs577085341 1438 dbSNP
rs1329601722 1447 dbSNP
rs1335440950 1448 dbSNP
rs1349571992 1449 dbSNP
rs73107796 1450 dbSNP
rs1295300968 1452 dbSNP
rs1370987033 1455 dbSNP
rs892911435 1463 dbSNP
rs1009939060 1465 dbSNP
rs1001048347 1470 dbSNP
rs1374889300 1480 dbSNP
rs1233602981 1483 dbSNP
rs1020108202 1494 dbSNP
rs1395913860 1499 dbSNP
rs1264861827 1500 dbSNP
rs1410625959 1501 dbSNP
rs1354152133 1505 dbSNP
rs1197086813 1509 dbSNP
rs971169317 1514 dbSNP
rs768566525 1515 dbSNP
rs1054325098 1516 dbSNP
rs1486406071 1518 dbSNP
rs1256211534 1523 dbSNP
rs1436680460 1525 dbSNP
rs1034245951 1526 dbSNP
rs1314844674 1528 dbSNP
rs892759406 1552 dbSNP
rs1179592421 1560 dbSNP
rs1010226262 1563 dbSNP
rs867450633 1564 dbSNP
rs1259101247 1569 dbSNP
rs1475778701 1574 dbSNP
rs1354702436 1579 dbSNP
rs1164648795 1586 dbSNP
rs1367289573 1591 dbSNP
rs1416681392 1592 dbSNP
rs776615590 1602 dbSNP
rs1403015793 1605 dbSNP
rs1024961303 1606 dbSNP
rs1477292093 1607 dbSNP
rs906526985 1610 dbSNP
rs1451936028 1625 dbSNP
rs1002139855 1626 dbSNP
rs148014853 1630 dbSNP
rs1033740250 1631 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HEK293S
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in GSM1084064. RNA binding protein: AGO2. Condition:CLIP_noemetine_AbnovaAb HITS-CLIP data was present in GSM1084069. RNA binding protein: AGO2. Condition:CLIP_emetine_SigmaAb ...

- Karginov FV; Hannon GJ, 2013, Genes & development.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' gauacccaccCUGUCUCUCCc 5'
                    || ||||||| 
Target 5' --------aaGAGAGAGAGGa 3'
1 - 13
Article - Karginov FV; Hannon GJ
- Genes & development, 2013
When adapting to environmental stress, cells attenuate and reprogram their translational output. In part, these altered translation profiles are established through changes in the interactions between RNA-binding proteins and mRNAs. The Argonaute 2 (Ago2)/microRNA (miRNA) machinery has been shown to participate in stress-induced translational up-regulation of a particular mRNA, CAT-1; however, a detailed, transcriptome-wide understanding of the involvement of Ago2 in the process has been lacking. Here, we profiled the overall changes in Ago2-mRNA interactions upon arsenite stress by cross-linking immunoprecipitation (CLIP) followed by high-throughput sequencing (CLIP-seq). Ago2 displayed a significant remodeling of its transcript occupancy, with the majority of 3' untranslated region (UTR) and coding sequence (CDS) sites exhibiting stronger interaction. Interestingly, target sites that were destined for release from Ago2 upon stress were depleted in miRNA complementarity signatures, suggesting an alternative mode of interaction. To compare the changes in Ago2-binding patterns across transcripts with changes in their translational states, we measured mRNA profiles on ribosome/polysome gradients by RNA sequencing (RNA-seq). Increased Ago2 occupancy correlated with stronger repression of translation for those mRNAs, as evidenced by a shift toward lighter gradient fractions upon stress, while release of Ago2 was associated with the limited number of transcripts that remained translated. Taken together, these data point to a role for Ago2 and the mammalian miRNAs in mediating the translational component of the stress response.
LinkOut: [PMID: 23824327]
CLIP-seq Support 1 for dataset GSM1084064
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_noemetine_AbnovaAb
Location of target site ENST00000342560.5 | 3UTR | AAAAGAGAGAGAGGAAGCGAGAGAGAGAGAG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM1084069
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_emetine_SigmaAb
Location of target site ENST00000342560.5 | 3UTR | AAGAGAGAGAGGAAGC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
209 hsa-miR-6769b-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT181753 UHMK1 U2AF homology motif kinase 1 2 2
MIRT287119 SMARCE1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1 2 2
MIRT395372 CDC42EP4 CDC42 effector protein 4 2 4
MIRT472533 NACC1 nucleus accumbens associated 1 2 4
MIRT472611 NAA50 N(alpha)-acetyltransferase 50, NatE catalytic subunit 2 2
MIRT482405 ADRB1 adrenoceptor beta 1 2 10
MIRT492330 SETD1B SET domain containing 1B 2 2
MIRT499238 VAV3 vav guanine nucleotide exchange factor 3 2 6
MIRT512274 ARHGDIA Rho GDP dissociation inhibitor alpha 2 6
MIRT534548 RUNX1 runt related transcription factor 1 2 2
MIRT535374 PEX5L peroxisomal biogenesis factor 5 like 2 2
MIRT535424 PDZD8 PDZ domain containing 8 2 2
MIRT539329 AHSA2 activator of HSP90 ATPase homolog 2 2 4
MIRT569350 EFHC1 EF-hand domain containing 1 2 2
MIRT576116 Klf6 Kruppel-like factor 6 2 2
MIRT607241 LINS lines homolog 1 2 4
MIRT607364 ASAH2 N-acylsphingosine amidohydrolase 2 2 4
MIRT609572 CATSPER4 cation channel sperm associated 4 2 2
MIRT610045 SERPINA3 serpin family A member 3 2 2
MIRT610284 PLCXD3 phosphatidylinositol specific phospholipase C X domain containing 3 2 2
MIRT610302 KLHL21 kelch like family member 21 2 2
MIRT610393 FOXE1 forkhead box E1 2 2
MIRT610432 ASAH2B N-acylsphingosine amidohydrolase 2B 2 2
MIRT610510 BARHL2 BarH like homeobox 2 2 2
MIRT611818 FCRL4 Fc receptor like 4 2 2
MIRT612755 MYOCD myocardin 2 2
MIRT613698 QPRT quinolinate phosphoribosyltransferase 2 2
MIRT613917 POU3F1 POU class 3 homeobox 1 2 2
MIRT615153 URGCP-MRPS24 URGCP-MRPS24 readthrough 2 2
MIRT615201 CLUAP1 clusterin associated protein 1 2 2
MIRT615338 ABCC12 ATP binding cassette subfamily C member 12 2 2
MIRT616706 UBXN2A UBX domain protein 2A 2 2
MIRT617186 GOSR2 golgi SNAP receptor complex member 2 2 4
MIRT617526 SORCS2 sortilin related VPS10 domain containing receptor 2 2 2
MIRT617596 NUDT5 nudix hydrolase 5 2 4
MIRT617763 C17orf105 chromosome 17 open reading frame 105 2 2
MIRT618613 SHOX short stature homeobox 2 2
MIRT619301 FAM26E calcium homeostasis modulator family member 5 2 2
MIRT619515 TXLNB taxilin beta 2 2
MIRT619925 NLRP9 NLR family pyrin domain containing 9 2 2
MIRT619942 C8orf33 chromosome 8 open reading frame 33 2 2
MIRT620025 NFAM1 NFAT activating protein with ITAM motif 1 2 2
MIRT620554 C10orf10 chromosome 10 open reading frame 10 2 4
MIRT620752 CCR5 C-C motif chemokine receptor 5 (gene/pseudogene) 2 2
MIRT621798 TMEM233 transmembrane protein 233 2 2
MIRT621843 TGFBR3 transforming growth factor beta receptor 3 2 2
MIRT622693 PLSCR1 phospholipid scramblase 1 2 2
MIRT622733 PITPNM3 PITPNM family member 3 2 2
MIRT623004 ONECUT3 one cut homeobox 3 2 2
MIRT623211 MTFR1L mitochondrial fission regulator 1 like 2 2
MIRT623771 GPR37L1 G protein-coupled receptor 37 like 1 2 2
MIRT624119 DNAH10OS dynein axonemal heavy chain 10 opposite strand 2 2
MIRT624150 DIAPH1 diaphanous related formin 1 2 2
MIRT624443 CAMK2N1 calcium/calmodulin dependent protein kinase II inhibitor 1 2 2
MIRT624855 ABI2 abl interactor 2 2 2
MIRT625311 SHISA6 shisa family member 6 2 2
MIRT625741 MTSS1 MTSS1, I-BAR domain containing 2 2
MIRT626292 ZNF85 zinc finger protein 85 2 2
MIRT627400 TMEM170A transmembrane protein 170A 2 2
MIRT627464 SYNRG synergin gamma 2 2
MIRT627913 KANSL1 KAT8 regulatory NSL complex subunit 1 2 2
MIRT636508 GDAP1L1 ganglioside induced differentiation associated protein 1 like 1 2 2
MIRT636910 KIAA0408 KIAA0408 2 2
MIRT637302 ACTN2 actinin alpha 2 2 2
MIRT638230 SOGA3 SOGA family member 3 2 2
MIRT639880 STC1 stanniocalcin 1 2 2
MIRT639999 PHF21B PHD finger protein 21B 2 2
MIRT640149 CEP104 centrosomal protein 104 2 2
MIRT640699 SKI SKI proto-oncogene 2 2
MIRT640911 RAB13 RAB13, member RAS oncogene family 2 2
MIRT641518 CREBBP CREB binding protein 2 2
MIRT641990 OXSR1 oxidative stress responsive 1 2 2
MIRT642635 EPPIN epididymal peptidase inhibitor 2 2
MIRT642744 TDRD6 tudor domain containing 6 2 2
MIRT642759 SDHAF2 succinate dehydrogenase complex assembly factor 2 2 2
MIRT642787 CHCHD3 coiled-coil-helix-coiled-coil-helix domain containing 3 2 2
MIRT643054 EPPIN-WFDC6 EPPIN-WFDC6 readthrough 2 2
MIRT643104 NDUFB5 NADH:ubiquinone oxidoreductase subunit B5 2 2
MIRT643316 TMEM151B transmembrane protein 151B 2 2
MIRT643715 ITK IL2 inducible T-cell kinase 2 2
MIRT644087 A4GALT alpha 1,4-galactosyltransferase (P blood group) 2 2
MIRT644112 SEL1L3 SEL1L family member 3 2 2
MIRT644377 ZNF286A zinc finger protein 286A 2 2
MIRT644408 FRMD6 FERM domain containing 6 2 2
MIRT644684 TMCO1 transmembrane and coiled-coil domains 1 2 2
MIRT644744 CCDC174 coiled-coil domain containing 174 2 2
MIRT644876 C2orf48 chromosome 2 open reading frame 48 2 2
MIRT645417 FAM110A family with sequence similarity 110 member A 2 2
MIRT645928 PLXNA3 plexin A3 2 2
MIRT646181 PTPN14 protein tyrosine phosphatase, non-receptor type 14 2 2
MIRT646554 TMCC2 transmembrane and coiled-coil domain family 2 2 2
MIRT647235 OR6A2 olfactory receptor family 6 subfamily A member 2 2 2
MIRT647263 PTGDR2 prostaglandin D2 receptor 2 2 2
MIRT647660 FOXL1 forkhead box L1 2 2
MIRT648284 TRAPPC2L trafficking protein particle complex 2 like 2 2
MIRT648493 CMBL carboxymethylenebutenolidase homolog 2 2
MIRT648963 TMEM45B transmembrane protein 45B 2 2
MIRT649511 RAB17 RAB17, member RAS oncogene family 2 2
MIRT650446 CPXM2 carboxypeptidase X, M14 family member 2 2 2
MIRT650712 KRT32 keratin 32 2 2
MIRT651069 ZNF518B zinc finger protein 518B 2 4
MIRT651090 ZNF516 zinc finger protein 516 2 2
MIRT651193 ZNF281 zinc finger protein 281 2 2
MIRT651330 ZCCHC2 zinc finger CCHC-type containing 2 2 2
MIRT651445 XKR4 XK related 4 2 2
MIRT651517 WNT4 Wnt family member 4 2 4
MIRT651694 VPS13D vacuolar protein sorting 13 homolog D 2 2
MIRT652173 TRIM66 tripartite motif containing 66 2 2
MIRT652432 TMEM239 transmembrane protein 239 2 2
MIRT652656 TIMM10 translocase of inner mitochondrial membrane 10 2 2
MIRT652707 THBS2 thrombospondin 2 2 2
MIRT652812 TBL2 transducin beta like 2 2 2
MIRT653350 SMG7 SMG7, nonsense mediated mRNA decay factor 2 2
MIRT653471 SLC4A1 solute carrier family 4 member 1 (Diego blood group) 2 2
MIRT653658 SLC27A4 solute carrier family 27 member 4 2 2
MIRT654691 PSMB5 proteasome subunit beta 5 2 2
MIRT654735 PRLR prolactin receptor 2 2
MIRT654931 POLR3D RNA polymerase III subunit D 2 2
MIRT655209 PHAX phosphorylated adaptor for RNA export 2 2
MIRT655346 PCP4L1 Purkinje cell protein 4 like 1 2 2
MIRT655404 PANK1 pantothenate kinase 1 2 2
MIRT655482 PAK3 p21 (RAC1) activated kinase 3 2 2
MIRT655964 NDNF neuron derived neurotrophic factor 2 2
MIRT656017 MYPN myopalladin 2 2
MIRT656491 MAP3K9 mitogen-activated protein kinase kinase kinase 9 2 2
MIRT657151 ITGA1 integrin subunit alpha 1 2 2
MIRT657411 HIVEP3 human immunodeficiency virus type I enhancer binding protein 3 2 2
MIRT657608 GRID1 glutamate ionotropic receptor delta type subunit 1 2 2
MIRT658181 FBXO9 F-box protein 9 2 2
MIRT658932 DPY19L1 dpy-19 like C-mannosyltransferase 1 2 2
MIRT659028 DHTKD1 dehydrogenase E1 and transketolase domain containing 1 2 2
MIRT659092 DENR density regulated re-initiation and release factor 2 2
MIRT659204 CYBB cytochrome b-245 beta chain 2 2
MIRT659718 CCDC93 coiled-coil domain containing 93 2 2
MIRT660185 BNC2 basonuclin 2 2 2
MIRT660805 AIFM2 apoptosis inducing factor, mitochondria associated 2 2 2
MIRT660900 ADCY6 adenylate cyclase 6 2 2
MIRT660925 ADAM19 ADAM metallopeptidase domain 19 2 2
MIRT661741 DTHD1 death domain containing 1 2 2
MIRT661998 EFTUD2 elongation factor Tu GTP binding domain containing 2 2 2
MIRT662639 PKHD1L1 PKHD1 like 1 2 2
MIRT664338 RAB8A RAB8A, member RAS oncogene family 2 2
MIRT666743 RALY RALY heterogeneous nuclear ribonucleoprotein 2 2
MIRT667070 PANK3 pantothenate kinase 3 2 2
MIRT667925 IGLON5 IgLON family member 5 2 2
MIRT668488 ETV3 ETS variant 3 2 2
MIRT668610 EHD4 EH domain containing 4 2 2
MIRT669419 ATP9A ATPase phospholipid transporting 9A (putative) 2 2
MIRT669652 ACSBG1 acyl-CoA synthetase bubblegum family member 1 2 2
MIRT674005 KCNN3 potassium calcium-activated channel subfamily N member 3 2 2
MIRT680447 SLCO5A1 solute carrier organic anion transporter family member 5A1 2 2
MIRT684326 GTF3C4 general transcription factor IIIC subunit 4 2 2
MIRT685625 C12orf49 chromosome 12 open reading frame 49 2 2
MIRT689978 ZNF185 zinc finger protein 185 with LIM domain 2 2
MIRT693962 HNRNPA1L2 heterogeneous nuclear ribonucleoprotein A1-like 2 2 2
MIRT698543 TFRC transferrin receptor 2 2
MIRT699982 RREB1 ras responsive element binding protein 1 2 2
MIRT702898 HNRNPA1 heterogeneous nuclear ribonucleoprotein A1 2 2
MIRT707383 VCAM1 vascular cell adhesion molecule 1 2 2
MIRT708312 CDH8 cadherin 8 2 2
MIRT708406 GRIN2A glutamate ionotropic receptor NMDA type subunit 2A 2 2
MIRT709299 LDLRAD4 low density lipoprotein receptor class A domain containing 4 2 2
MIRT710326 STK40 serine/threonine kinase 40 2 2
MIRT710729 C19orf68 zinc finger SWIM-type containing 9 2 2
MIRT710970 CMKLR1 chemerin chemokine-like receptor 1 2 2
MIRT711178 EMCN endomucin 2 2
MIRT711590 SETD1A SET domain containing 1A 2 2
MIRT711611 LHX5 LIM homeobox 5 2 2
MIRT711701 GMPR guanosine monophosphate reductase 2 2
MIRT711850 AMOTL2 angiomotin like 2 2 2
MIRT712358 NAT14 N-acetyltransferase 14 (putative) 2 2
MIRT712377 MTPN myotrophin 2 2
MIRT712469 KCNC3 potassium voltage-gated channel subfamily C member 3 2 2
MIRT712839 RHOA ras homolog family member A 2 2
MIRT713592 ANKMY1 ankyrin repeat and MYND domain containing 1 2 2
MIRT713982 ASIC4 acid sensing ion channel subunit family member 4 2 2
MIRT714534 ZBTB39 zinc finger and BTB domain containing 39 2 2
MIRT714570 GALNT10 polypeptide N-acetylgalactosaminyltransferase 10 2 2
MIRT714610 EXO5 exonuclease 5 2 2
MIRT714943 ZNF330 zinc finger protein 330 2 2
MIRT715132 ACADL acyl-CoA dehydrogenase, long chain 2 2
MIRT716018 TMPRSS5 transmembrane protease, serine 5 2 2
MIRT716204 TYW3 tRNA-yW synthesizing protein 3 homolog 2 2
MIRT716674 PPP6R1 protein phosphatase 6 regulatory subunit 1 2 2
MIRT717366 EDN2 endothelin 2 2 2
MIRT718110 CRTC1 CREB regulated transcription coactivator 1 2 2
MIRT718502 GYS1 glycogen synthase 1 2 2
MIRT719146 DPYSL5 dihydropyrimidinase like 5 2 2
MIRT719415 B4GALNT3 beta-1,4-N-acetyl-galactosaminyltransferase 3 2 2
MIRT719986 MAPK1 mitogen-activated protein kinase 1 2 2
MIRT720347 BACE2 beta-site APP-cleaving enzyme 2 2 2
MIRT720452 SLC16A5 solute carrier family 16 member 5 2 2
MIRT720493 TMEM178B transmembrane protein 178B 2 2
MIRT720666 C11orf54 chromosome 11 open reading frame 54 2 2
MIRT721091 CCBE1 collagen and calcium binding EGF domains 1 2 2
MIRT721334 IFNAR2 interferon alpha and beta receptor subunit 2 2 2
MIRT721384 MACC1 MACC1, MET transcriptional regulator 2 2
MIRT721508 CARHSP1 calcium regulated heat stable protein 1 2 2
MIRT721827 POU6F1 POU class 6 homeobox 1 2 2
MIRT722136 TTLL11 tubulin tyrosine ligase like 11 2 2
MIRT723070 GGA1 golgi associated, gamma adaptin ear containing, ARF binding protein 1 2 2
MIRT723115 ZSCAN16 zinc finger and SCAN domain containing 16 2 2
MIRT723374 ZNF470 zinc finger protein 470 2 2
MIRT724446 OPA3 OPA3, outer mitochondrial membrane lipid metabolism regulator 2 2
MIRT724528 ATP2B1 ATPase plasma membrane Ca2+ transporting 1 2 2
MIRT724643 PKDREJ polycystin family receptor for egg jelly 2 2
MIRT724711 CRAMP1L cramped chromatin regulator homolog 1 2 2
MIRT724750 ZNF391 zinc finger protein 391 2 2
MIRT724770 PSG4 pregnancy specific beta-1-glycoprotein 4 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-6769b Ceritinib 57379345 NSC776422 approved resistant cell line (H3122)
hsa-mir-6769b Docetaxel+Cisplatin+5-Fluorouracil sensitive tissue (hypopharyngeal squamous cell carcinoma)
hsa-miR-6769b-3p Osimertinib 71496458 NSC779217 approved sensitive cell line (PC9)
hsa-miR-6769b-3p Cisplatin 5460033 NSC119875 approved resistant cell line (A549)
hsa-miR-6769b-3p Ceritinib 57379345 NSC776422 approved resistant cell line (H3122)

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