pre-miRNA Information
pre-miRNA hsa-mir-4793   
Genomic Coordinates chr3: 48644194 - 48644280
Description Homo sapiens miR-4793 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-4793-3p
Sequence 58| UCUGCACUGUGAGUUGGCUGGCU |80
Evidence Experimental
Experiments Illumina
DRVs in miRNA
Mutant ID Mutant Position Mutant Source
COSM5899925 14 COSMIC
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs779602935 6 dbSNP
rs757908486 7 dbSNP
rs1422853760 15 dbSNP
rs377721296 23 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol EPB41   
Synonyms 4.1R, EL1, HE
Description erythrocyte membrane protein band 4.1
Transcript NM_001166005   
Other Transcripts NM_001166006 , NM_001166007 , NM_004437 , NM_203342 , NM_203343   
Expression
Putative miRNA Targets on EPB41
3'UTR of EPB41
(miRNA target sites are highlighted)
>EPB41|NM_001166005|3'UTR
   1 GCTCAGGAACTAACCTACCCCAACTCTGCCCTTCTCCCATCCAAGAGAAACCAGCAAAATGATAAAGAAGCTAACCTGCC
  81 ATAGTCAGACTTCAGACTTTCAAGATTATTCTAAATCACCAGAAAATTAATTTCAGTTTCTATTGGGAGTTTATACCAAG
 161 AGATTCTTCTAGATCTCATTGATCCTTTTGAAGAGCTTTTTCTATATTAGGATATCAGAATTGTTCAACTTTTCACTCTA
 241 TAGACTGTTTTAAGAGTTTTGGGGTTTTTTTAATTGGGTGGTTTGTAACCCCTTCAGCCTAGCCTCTCTGCCCATTTATT
 321 TCCAACCCCAACAGACACTGACAGGGTCCATGGAATTCTTCGGGAAATCCTCCAAGGACTCTTGTCAGCTGTGTTGGAAG
 401 CCAAAGCCAGCTTAGTGGGACTTCCGCGTCTCTCCCTAGTCTTATCCCCTTTGGATGATGGCAGAAACTTCATGAACCAG
 481 CCCTTTCTCAGAGCCAGTGATGTGAGTGTATCAGAATGCCAGGGAGGGCACCAGCCCTGATCCACAGACCTCGGAAAGAT
 561 GCCCCTGTTCCTTTGTTGCGGGTGGTTTTGGTAAGGCAGAGCCCTCTGCTGAGAATGTAGTATTGTTTTTCCCCTCTCCC
 641 TCCTGCTTTCTTTTTGGAGCTTCTTTGGGTCAAAGACATGGAAGTTGCTTCAGATATCTGATACTGTGAATGTTTGAACA
 721 TATCCGTGGCCTTCACCTCTCCAGCTACCCTTTTACCTCATCAGAAGCAGTGGCTCAGCTAAGTGCTCCCCCTAGCTCCC
 801 ATCTCAGGAGACCAAATCTCACAGAAAAATAGGCACTTTGGGCCAAAAGCTCTAATGGAACATTTTTAGTGGTGATTTGG
 881 GGAAGGAAAGTTAATGAGGTTTTTAAAATAAGGTTTTCTAGTTTTGAGAGTGTGCACTTCACACAGGGGAATGGGGTTAC
 961 TTCTGTCTGATCCTGGGCCTTTCTTTCATCCCAAATGACAAGGAATGTGGCTCAGAGAAGGGTTTTTCTTTTTTGACCTT
1041 TCTTCTCTCAACAGGAACCTGCCTGAGGACACCCTTCTAGAGCAAGGAATTGACTTTTAGGAGCCGTTCTCCCCACAAGA
1121 CACCACATGACAAGGGGTATAAGCCCCAGCCCTGCTCATTCCCACTCACCAGCTGAGGTCTGTCAGGTTTTGAAGGCTTG
1201 ATTTTGTGGTGGGTTTGGGGCTTAGTTTTCCTTTTTTTCATTTTGATTTTTGAAAGTGAAGATGATGCCCTAATTCCTGG
1281 TAAGGATTTGGGGCATAGTTTTTTGTTTTTTTGAGACGGAGTTTCGCTCTTGTTGCCCAAGCTGGAGTGCAGTGGCGCGA
1361 TCTCGGCTCACTGCAACCTCCGCCTCCTGGGTTCAAGCAGTTCTCTTGCCTCAGCCTCCCAAGTAGCTGGGATGACAGGC
1441 GCACACCACCACGCCCAGCAAATTTTTTGTATTTTTAGTAGAAACGGGATTTCACCTTGTTAGGCTGGTCTCGAACTCCT
1521 GACCTCAGGTGATCCACCCACCTTGGCCTCCCAAAGTGCTGGGATTACAGGTGTGAGCCACCACGCCCGGCCGATTTGGG
1601 GCATTTTTATTTAACAGAACTTCTCTAACCTTCCAACTGCTTCCCACAAACACATTGGCCTCAAGGCTCCTTAGAATCCC
1681 AGTTCCAGCTTCCTAAAATAGACAGTGGGTATCGGGCAGCAGTCACTGGGGCTCAAGGGCAGTGAGCAAGAGAAATGTCT
1761 AAAGCTGCTTCTCCCAACACCGTCCAAAGTCTCCACTGCCTGAGTTTTGTTTCGGCTGGTTTGAACTCATTTCGGGTGTG
1841 TGCATTTTTCTTTTGGTACCCATGTGAGACATGAACAACAGGAGGGAGGGAAAGAGCCCAGGTGGGACGTGGGACAGGCT
1921 TAGGGGAAAGAGCTTGTCCTATCTCAGGAACAAAATTATAGGCTGTGGGCAGAGGGTCTGAAAGGTGGGCTTTGGGGTAG
2001 TGCCCAAGCCTGGTCGTGTTGCCAGGAGTGGTGACAAGAAATGCAGCTTACATCAAACGAACATGTAGTGCATGCCCACT
2081 GCCTGATGGCCAGATGGCCTGTAGGAAGAGCTACCAGGGCTTCCAGACCTGTGGAACGAAGAGGATGGGGAAAAGGCAGA
2161 GGGCACTGAGTGTCCCTTTAAAAACTAACCCACTGAATATTCCGTGTGATCTAGAACAGTGTGGCAGCTTTCACAGCACA
2241 GGACCGTTCATCGGGGGCCTAAACGTTTCCCTCAGCTCTGTCACCAACTCACTTCTCTCGGCTTCGTTGTCTGTAAATTG
2321 GATGAAAAGAGCTCTAATGCCTTTCAGGCTCTTAGAAGCCATAGATTTGGACAAGCCCAGCAAGATGGGTGTCCTTCCAG
2401 GCCTCTTCCCCTTTCCTCCATCTCTGGCAACAGTTCTTGGGGTTTGGCAATTGTTTGGATTTTTTTTCTTTCTGCAGTTG
2481 TGTGTATGTGTGTTTGTGTGAAGAAAAACAGACTCTGTCCAGGTAGAAATGGTGAGGAGGGGGAAGAGAATTACATTTCC
2561 AGGGTCAGAAACTTGGCAACAGTTTTCCTAGAGTGACTCAGACACACCACAGTAACAACTCTCGCTGCAATTTTATTTTA
2641 ATTTGAGAAATAAAGATTTCCTCCAAGCCACATGAGGACTCTGGCACCCACCCACAAAGCAAGACCTGTATTTATAAGCC
2721 GAGGGCTCAGGGAGCCTAACTGCGGGACCCGTCAGGGCCCCGTGACCCATCCCCGTCCCCACCCCCCCCTCCACCGCTGG
2801 GCCCATCAGTGTGTGTTGGGGGGATGCTTGGCAGCTGGGGGTGAGGAGACAACAAACCTCGGGAACTGGAGCCAGAGCTG
2881 CGGCCTGACTGACGCCTTTTGATGCTCACGGGAAATTTCTGCCCAGGATCTCAGCCCCAGGCTGGTTGTTTCTACAAATC
2961 TCTCTCAAATGTATTATTTTGGTGACAAAAATGAAGGAGCTTTGTAAATTTTTTTTAAAATTATGAATCATATCAAGTAG
3041 TTGTTTACATTTCTTGAAAAAATAGGAACTCGGGCAGCAGAATCAGATTGGCAGAATCTTTAGACTACACAGGCAATAAT
3121 CAAGTCTGCTGTTTTGGCCTTTCGTAGTAGAAGTGGTTGTAGTGTTTAGATATCTGTTTGGTCTTGCTTCTTGTATTGCA
3201 TTTTTTTCAATAAACAACAACAAAAAGAACTCTCAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' ucggucGGUUGAGUGUCACGUCu 5'
                ||||  :: ||||||| 
Target 5' tgttgcCCAAGCTGGAGTGCAGt 3'
1331 - 1353 153.00 -16.20
2
miRNA  3' ucGGUCGGUUGAGUGUCACGUcu 5'
            | | | ||| :::||||||  
Target 5' atCAAACGAACATGTAGTGCAtg 3'
2052 - 2074 141.00 -13.10
3
miRNA  3' ucgGUCGGU-----UGAGUGUCACGUCu 5'
             |||:||     :|||| || |||| 
Target 5' cagCAGTCACTGGGGCTCA-AGGGCAGt 3'
1717 - 1743 131.00 -17.10
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
1163137 1429 ClinVar
COSN26975110 2 COSMIC
COSN30184505 6 COSMIC
COSN28738897 20 COSMIC
COSN30629936 43 COSMIC
COSN21817795 67 COSMIC
COSN25816312 301 COSMIC
COSN29925146 750 COSMIC
COSN7216348 1226 COSMIC
COSN17225675 1298 COSMIC
COSN23014313 1367 COSMIC
COSN32057541 1415 COSMIC
COSN31536770 1609 COSMIC
COSN26679432 1811 COSMIC
COSN31589690 1913 COSMIC
COSN26273608 1953 COSMIC
COSN31549226 2027 COSMIC
COSN8455977 2085 COSMIC
COSN31533210 2182 COSMIC
COSN30539318 2236 COSMIC
COSN21856483 2446 COSMIC
COSN21156543 2457 COSMIC
COSN16703786 2830 COSMIC
COSN23304504 3144 COSMIC
COSN31565106 3268 COSMIC
COSN23014314 3290 COSMIC
COSN22690947 3452 COSMIC
COSN30168253 3564 COSMIC
COSN31568544 3640 COSMIC
COSN31528302 4002 COSMIC
COSN31536779 4006 COSMIC
COSN24297953 4043 COSMIC
COSN19394228 4166 COSMIC
rs12120422 2919 GWAS
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1313702647 2 dbSNP
rs1323326949 4 dbSNP
rs763754752 5 dbSNP
rs997917689 7 dbSNP
rs1250713797 8 dbSNP
rs747974264 12 dbSNP
rs1030787594 16 dbSNP
rs201492278 17 dbSNP
rs139295705 20 dbSNP
rs1183862447 21 dbSNP
rs1326771716 26 dbSNP
rs765734057 30 dbSNP
rs755979166 33 dbSNP
rs1345839954 39 dbSNP
rs750772842 43 dbSNP
rs777820625 46 dbSNP
rs758843820 49 dbSNP
rs1203877612 50 dbSNP
rs909581586 59 dbSNP
rs1168727244 60 dbSNP
rs1354468838 61 dbSNP
rs1466546760 74 dbSNP
rs749970251 75 dbSNP
rs914749610 78 dbSNP
rs1404086763 79 dbSNP
rs577389693 80 dbSNP
rs1303692716 83 dbSNP
rs150015820 101 dbSNP
rs556935446 104 dbSNP
rs1212623729 110 dbSNP
rs1294508826 125 dbSNP
rs1318533824 130 dbSNP
rs950237349 134 dbSNP
rs1261139909 136 dbSNP
rs573870641 140 dbSNP
rs927278303 141 dbSNP
rs1238869646 142 dbSNP
rs905928388 145 dbSNP
rs1185156942 161 dbSNP
rs938712274 173 dbSNP
rs1057136263 183 dbSNP
rs1054555346 196 dbSNP
rs1173504988 205 dbSNP
rs537725417 208 dbSNP
rs1199783192 211 dbSNP
rs1010654793 213 dbSNP
rs930077744 217 dbSNP
rs1428260841 227 dbSNP
rs1479346563 231 dbSNP
rs902464515 233 dbSNP
rs1161148016 237 dbSNP
rs998029016 238 dbSNP
rs1048667330 263 dbSNP
rs541905507 269 dbSNP
rs145159482 270 dbSNP
rs1401590595 285 dbSNP
rs1281316794 288 dbSNP
rs1453026933 293 dbSNP
rs953786338 295 dbSNP
rs1006787435 297 dbSNP
rs1287175029 298 dbSNP
rs1280055033 300 dbSNP
rs1314598015 305 dbSNP
rs1214713461 307 dbSNP
rs985147727 309 dbSNP
rs1039668120 310 dbSNP
rs1196237096 327 dbSNP
rs1367597993 328 dbSNP
rs900826819 334 dbSNP
rs1173253423 337 dbSNP
rs1427429412 339 dbSNP
rs1399022469 341 dbSNP
rs1405703793 345 dbSNP
rs1158713138 348 dbSNP
rs1361354712 348 dbSNP
rs962315582 348 dbSNP
rs997887946 352 dbSNP
rs1219253189 354 dbSNP
rs1220476718 354 dbSNP
rs1222686556 354 dbSNP
rs1289977411 354 dbSNP
rs1355357169 354 dbSNP
rs1451386076 354 dbSNP
rs1491257119 354 dbSNP
rs537469371 354 dbSNP
rs11442328 355 dbSNP
rs1343978473 356 dbSNP
rs1468684701 360 dbSNP
rs1178051967 373 dbSNP
rs1247234187 374 dbSNP
rs1308213542 378 dbSNP
rs1316824301 379 dbSNP
rs1405706559 393 dbSNP
rs1325502250 395 dbSNP
rs1352644048 399 dbSNP
rs12145548 402 dbSNP
rs527819634 408 dbSNP
rs1309273911 414 dbSNP
rs1378677650 422 dbSNP
rs1030756452 431 dbSNP
rs1313923234 437 dbSNP
rs1356144356 438 dbSNP
rs541501962 441 dbSNP
rs573667235 442 dbSNP
rs781688659 448 dbSNP
rs1198100532 449 dbSNP
rs981620454 457 dbSNP
rs968933016 458 dbSNP
rs748584475 463 dbSNP
rs1182020712 467 dbSNP
rs531668 475 dbSNP
rs1408511160 485 dbSNP
rs1164739343 488 dbSNP
rs1417304104 499 dbSNP
rs148719501 503 dbSNP
rs914665713 514 dbSNP
rs1449798659 517 dbSNP
rs1156837999 532 dbSNP
rs144877927 533 dbSNP
rs1245990663 537 dbSNP
rs1286258401 541 dbSNP
rs992746273 542 dbSNP
rs1218632588 549 dbSNP
rs918600954 552 dbSNP
rs930021695 572 dbSNP
rs1459182912 573 dbSNP
rs1363913897 577 dbSNP
rs1201800939 580 dbSNP
rs1255775992 590 dbSNP
rs1444700854 591 dbSNP
rs1443153414 594 dbSNP
rs372678832 595 dbSNP
rs1042152321 603 dbSNP
rs1240202030 612 dbSNP
rs902411837 619 dbSNP
rs998542113 622 dbSNP
rs1299089788 629 dbSNP
rs1050980705 635 dbSNP
rs1390103196 638 dbSNP
rs1317794521 642 dbSNP
rs147956003 647 dbSNP
rs182361572 648 dbSNP
rs1246031543 649 dbSNP
rs763549363 650 dbSNP
rs1338955372 656 dbSNP
rs942540296 658 dbSNP
rs1399759157 666 dbSNP
rs548606254 669 dbSNP
rs1221769232 675 dbSNP
rs1039637155 683 dbSNP
rs1255430817 684 dbSNP
rs1290461169 685 dbSNP
rs780700030 695 dbSNP
rs1202469820 696 dbSNP
rs1282389850 701 dbSNP
rs1487870228 708 dbSNP
rs1319538034 709 dbSNP
rs901131991 720 dbSNP
rs933899447 721 dbSNP
rs962472859 724 dbSNP
rs1052496924 726 dbSNP
rs1156495720 727 dbSNP
rs1480192431 733 dbSNP
rs1419515677 739 dbSNP
rs565304794 746 dbSNP
rs892144557 749 dbSNP
rs1299113492 751 dbSNP
rs534765880 759 dbSNP
rs1176645550 762 dbSNP
rs1385651415 767 dbSNP
rs1301185475 770 dbSNP
rs1331796552 782 dbSNP
rs1022072712 793 dbSNP
rs993829569 811 dbSNP
rs1259211246 824 dbSNP
rs904679996 848 dbSNP
rs1445212771 856 dbSNP
rs1287964296 876 dbSNP
rs971099532 876 dbSNP
rs748862493 889 dbSNP
rs1183041853 891 dbSNP
rs557385424 899 dbSNP
rs1434421594 906 dbSNP
rs1034482840 910 dbSNP
rs927530774 910 dbSNP
rs960244814 926 dbSNP
rs1160074115 927 dbSNP
rs1362924319 930 dbSNP
rs993050981 932 dbSNP
rs1171404821 945 dbSNP
rs1293512062 950 dbSNP
rs958825002 962 dbSNP
rs1392025601 964 dbSNP
rs1388629414 975 dbSNP
rs1307100386 976 dbSNP
rs1026040032 984 dbSNP
rs951435180 986 dbSNP
rs571119109 1006 dbSNP
rs1311697634 1030 dbSNP
rs1339150242 1039 dbSNP
rs1137482 1044 dbSNP
rs990349715 1046 dbSNP
rs771435427 1047 dbSNP
rs1489384931 1055 dbSNP
rs536889790 1062 dbSNP
rs1193586725 1071 dbSNP
rs954945314 1071 dbSNP
rs910003339 1081 dbSNP
rs986311762 1090 dbSNP
rs1237098142 1091 dbSNP
rs914659024 1095 dbSNP
rs942510521 1099 dbSNP
rs1290281497 1109 dbSNP
rs975206987 1110 dbSNP
rs1382983685 1136 dbSNP
rs946148372 1143 dbSNP
rs1164473411 1163 dbSNP
rs557115351 1164 dbSNP
rs933867375 1165 dbSNP
rs1459947114 1178 dbSNP
rs141897769 1190 dbSNP
rs536530564 1195 dbSNP
rs1399694616 1206 dbSNP
rs1447577390 1210 dbSNP
rs933357887 1215 dbSNP
rs1227536251 1216 dbSNP
rs145534734 1216 dbSNP
rs889710020 1227 dbSNP
rs1323272725 1229 dbSNP
rs1196498416 1238 dbSNP
rs1264830633 1245 dbSNP
rs1216794945 1251 dbSNP
rs1257314425 1254 dbSNP
rs946436289 1256 dbSNP
rs1318062544 1261 dbSNP
rs1043863685 1273 dbSNP
rs1199932997 1276 dbSNP
rs1006674940 1280 dbSNP
rs1240924474 1280 dbSNP
rs371284780 1280 dbSNP
rs904913176 1280 dbSNP
rs1257378196 1290 dbSNP
rs1001915744 1294 dbSNP
rs147726235 1301 dbSNP
rs1423472463 1311 dbSNP
rs1466236308 1326 dbSNP
rs546280681 1328 dbSNP
rs188971903 1341 dbSNP
rs1187283295 1347 dbSNP
rs1014900593 1361 dbSNP
rs1381128196 1364 dbSNP
rs502393 1367 dbSNP
rs971430458 1368 dbSNP
rs1219944700 1371 dbSNP
rs193136538 1377 dbSNP
rs1311095313 1378 dbSNP
rs1210432340 1393 dbSNP
rs528972339 1395 dbSNP
rs1034591435 1398 dbSNP
rs1191903521 1400 dbSNP
rs1263107064 1402 dbSNP
rs1168737226 1403 dbSNP
rs958983591 1405 dbSNP
rs1335331624 1407 dbSNP
rs1356880694 1411 dbSNP
rs2249138 1415 dbSNP
rs563893910 1429 dbSNP
rs1270312657 1430 dbSNP
rs914773442 1441 dbSNP
rs557561563 1443 dbSNP
rs975508125 1444 dbSNP
rs1216478339 1448 dbSNP
rs923385708 1454 dbSNP
rs933285612 1455 dbSNP
rs911117958 1461 dbSNP
rs986130536 1461 dbSNP
rs1350965605 1462 dbSNP
rs1214924673 1471 dbSNP
rs942647947 1476 dbSNP
rs1202893127 1478 dbSNP
rs922407071 1489 dbSNP
rs1245464739 1498 dbSNP
rs1477754265 1500 dbSNP
rs76331298 1505 dbSNP
rs868581216 1508 dbSNP
rs929829143 1520 dbSNP
rs1448771538 1524 dbSNP
rs1047217526 1540 dbSNP
rs1360971410 1542 dbSNP
rs747786298 1552 dbSNP
rs1421261635 1566 dbSNP
rs185144859 1568 dbSNP
rs913858262 1569 dbSNP
rs1241655097 1570 dbSNP
rs1002536578 1579 dbSNP
rs1373996982 1580 dbSNP
rs761641058 1583 dbSNP
rs946627037 1595 dbSNP
rs115245496 1596 dbSNP
rs1225783714 1597 dbSNP
rs35277924 1601 dbSNP
rs1288389132 1607 dbSNP
rs1451474696 1611 dbSNP
rs1430345150 1623 dbSNP
rs1222424732 1625 dbSNP
rs1255030770 1633 dbSNP
rs1456471565 1635 dbSNP
rs926302389 1644 dbSNP
rs1178307368 1649 dbSNP
rs188466071 1652 dbSNP
rs1011807268 1655 dbSNP
rs771705788 1656 dbSNP
rs967913444 1663 dbSNP
rs1405940390 1665 dbSNP
rs1171292023 1678 dbSNP
rs937736203 1694 dbSNP
rs977628471 1700 dbSNP
rs1410766581 1714 dbSNP
rs1397552896 1716 dbSNP
rs1030825657 1717 dbSNP
rs1056163293 1723 dbSNP
rs550953412 1724 dbSNP
rs954839654 1727 dbSNP
rs1378607682 1729 dbSNP
rs41266201 1730 dbSNP
rs537127814 1732 dbSNP
rs942052229 1736 dbSNP
rs758372657 1741 dbSNP
rs550535141 1742 dbSNP
rs1345857037 1744 dbSNP
rs1239053155 1748 dbSNP
rs1222705950 1759 dbSNP
rs1185663869 1766 dbSNP
rs1272907525 1780 dbSNP
rs766305031 1790 dbSNP
rs1224335554 1797 dbSNP
rs41266203 1801 dbSNP
rs1464651841 1803 dbSNP
rs1170723558 1805 dbSNP
rs1046930500 1807 dbSNP
rs1412447922 1808 dbSNP
rs1333055541 1830 dbSNP
rs755146419 1847 dbSNP
rs1016916137 1850 dbSNP
rs906930148 1857 dbSNP
rs964058961 1862 dbSNP
rs1295663279 1864 dbSNP
rs1339041078 1866 dbSNP
rs1224944079 1867 dbSNP
rs1218118808 1871 dbSNP
rs373427279 1885 dbSNP
rs1278170101 1889 dbSNP
rs781615798 1890 dbSNP
rs192819601 1899 dbSNP
rs1189718477 1906 dbSNP
rs1269904502 1907 dbSNP
rs1260978059 1911 dbSNP
rs1485642053 1914 dbSNP
rs1029782347 1920 dbSNP
rs1194265402 1928 dbSNP
rs1374334240 1929 dbSNP
rs1476750965 1931 dbSNP
rs1171656792 1932 dbSNP
rs1402394923 1933 dbSNP
rs1435766547 1936 dbSNP
rs955187801 1943 dbSNP
rs533104914 1948 dbSNP
rs987951940 1954 dbSNP
rs894123412 1963 dbSNP
rs572478367 1964 dbSNP
rs913731994 1968 dbSNP
rs535056008 1975 dbSNP
rs748492591 1976 dbSNP
rs756509869 1981 dbSNP
rs1345926307 1983 dbSNP
rs558164417 2006 dbSNP
rs1283677581 2010 dbSNP
rs770913792 2011 dbSNP
rs1259757855 2029 dbSNP
rs1379093850 2036 dbSNP
rs1217330362 2038 dbSNP
rs903471100 2043 dbSNP
rs1430958301 2044 dbSNP
rs1197505743 2049 dbSNP
rs1377868069 2052 dbSNP
rs937706456 2053 dbSNP
rs1156427819 2054 dbSNP
rs1056135044 2063 dbSNP
rs1419467935 2064 dbSNP
rs1289981063 2068 dbSNP
rs1165044116 2094 dbSNP
rs999428689 2098 dbSNP
rs578063927 2110 dbSNP
rs1385189457 2113 dbSNP
rs1385929382 2121 dbSNP
rs917706891 2122 dbSNP
rs543866866 2127 dbSNP
rs1030526730 2133 dbSNP
rs1236815242 2136 dbSNP
rs563753634 2142 dbSNP
rs1047196519 2143 dbSNP
rs887287718 2153 dbSNP
rs1352739016 2165 dbSNP
rs1240524188 2176 dbSNP
rs954887004 2179 dbSNP
rs1278907181 2180 dbSNP
rs1267490965 2183 dbSNP
rs1351545741 2186 dbSNP
rs986153468 2191 dbSNP
rs1005778272 2212 dbSNP
rs1038657968 2217 dbSNP
rs1292661660 2222 dbSNP
rs919638469 2230 dbSNP
rs1358983749 2235 dbSNP
rs569716 2236 dbSNP
rs1456881728 2247 dbSNP
rs1163151785 2255 dbSNP
rs1275478538 2261 dbSNP
rs1443173694 2262 dbSNP
rs1329572355 2266 dbSNP
rs973462813 2270 dbSNP
rs1391785119 2287 dbSNP
rs996888390 2290 dbSNP
rs1029670959 2292 dbSNP
rs537234778 2293 dbSNP
rs774858756 2295 dbSNP
rs955450856 2296 dbSNP
rs1273724115 2305 dbSNP
rs1010079157 2310 dbSNP
rs928460549 2316 dbSNP
rs1196138226 2326 dbSNP
rs1020760483 2327 dbSNP
rs542923859 2333 dbSNP
rs559661032 2334 dbSNP
rs528758035 2341 dbSNP
rs1184889218 2342 dbSNP
rs1187528289 2345 dbSNP
rs959031250 2345 dbSNP
rs1385389045 2347 dbSNP
rs1419133250 2364 dbSNP
rs776300767 2367 dbSNP
rs1168565788 2368 dbSNP
rs1457037425 2372 dbSNP
rs947029835 2373 dbSNP
rs550990247 2374 dbSNP
rs1376778492 2375 dbSNP
rs1395181723 2378 dbSNP
rs140164668 2380 dbSNP
rs373399473 2381 dbSNP
rs1410350861 2387 dbSNP
rs577922836 2389 dbSNP
rs377366417 2397 dbSNP
rs1307530275 2404 dbSNP
rs567350120 2410 dbSNP
rs471099 2412 dbSNP
rs1482486896 2414 dbSNP
rs1038626099 2415 dbSNP
rs900044765 2439 dbSNP
rs1258858864 2451 dbSNP
rs1476502679 2452 dbSNP
rs932897007 2455 dbSNP
rs41266205 2456 dbSNP
rs1272168395 2457 dbSNP
rs1172825591 2459 dbSNP
rs891136855 2461 dbSNP
rs1009633419 2463 dbSNP
rs995226391 2466 dbSNP
rs1021484463 2468 dbSNP
rs903675724 2469 dbSNP
rs866617512 2470 dbSNP
rs1204868704 2473 dbSNP
rs1000694752 2475 dbSNP
rs1033478358 2478 dbSNP
rs1298786001 2478 dbSNP
rs1026344917 2487 dbSNP
rs766401864 2498 dbSNP
rs992052826 2501 dbSNP
rs751573130 2502 dbSNP
rs566803684 2504 dbSNP
rs1241986748 2512 dbSNP
rs1486238348 2515 dbSNP
rs368038445 2517 dbSNP
rs556417234 2517 dbSNP
rs538921639 2518 dbSNP
rs755149266 2519 dbSNP
rs1432867761 2520 dbSNP
rs1169682174 2528 dbSNP
rs543595322 2529 dbSNP
rs950458911 2536 dbSNP
rs1337330532 2539 dbSNP
rs1297517188 2551 dbSNP
rs1345643798 2553 dbSNP
rs983209360 2555 dbSNP
rs908991035 2560 dbSNP
rs941761756 2568 dbSNP
rs1291339639 2575 dbSNP
rs112542157 2587 dbSNP
rs1366254102 2593 dbSNP
rs991357383 2595 dbSNP
rs184208988 2600 dbSNP
rs537153855 2601 dbSNP
rs116358908 2604 dbSNP
rs1284218937 2605 dbSNP
rs1317995427 2608 dbSNP
rs574041462 2614 dbSNP
rs1245095653 2629 dbSNP
rs1326119439 2632 dbSNP
rs1194563877 2637 dbSNP
rs921443366 2639 dbSNP
rs41266207 2645 dbSNP
rs1437593394 2652 dbSNP
rs553129278 2654 dbSNP
rs565818076 2660 dbSNP
rs1263092780 2671 dbSNP
rs1402419263 2676 dbSNP
rs1162596893 2682 dbSNP
rs1482583666 2683 dbSNP
rs891115208 2696 dbSNP
rs573235053 2702 dbSNP
rs1042473789 2705 dbSNP
rs1327506766 2709 dbSNP
rs924275117 2711 dbSNP
rs1445054732 2712 dbSNP
rs1279388941 2715 dbSNP
rs1447217138 2718 dbSNP
rs1192491736 2720 dbSNP
rs1452670073 2723 dbSNP
rs1226042016 2725 dbSNP
rs545261058 2729 dbSNP
rs534697632 2730 dbSNP
rs1214323811 2734 dbSNP
rs1275314003 2735 dbSNP
rs890741582 2741 dbSNP
rs1033445717 2742 dbSNP
rs553103253 2746 dbSNP
rs1181328561 2747 dbSNP
rs1471034285 2757 dbSNP
rs757691460 2759 dbSNP
rs1007679351 2786 dbSNP
rs1461538197 2788 dbSNP
rs1166407352 2791 dbSNP
rs1039200362 2795 dbSNP
rs1329112592 2797 dbSNP
rs1336782550 2798 dbSNP
rs1444739402 2799 dbSNP
rs1177022603 2801 dbSNP
rs767744623 2809 dbSNP
rs1234418479 2813 dbSNP
rs1295246841 2815 dbSNP
rs1316145171 2816 dbSNP
rs1195508054 2818 dbSNP
rs895000952 2820 dbSNP
rs530476219 2829 dbSNP
rs543978603 2830 dbSNP
rs1256747566 2835 dbSNP
rs1475521793 2844 dbSNP
rs188830573 2849 dbSNP
rs1025342886 2850 dbSNP
rs1474786725 2852 dbSNP
rs950708523 2860 dbSNP
rs950406999 2862 dbSNP
rs1385768356 2869 dbSNP
rs45605235 2870 dbSNP
rs1035600327 2879 dbSNP
rs1015937712 2900 dbSNP
rs573244910 2902 dbSNP
rs991303686 2917 dbSNP
rs963093844 2918 dbSNP
rs12120422 2919 dbSNP
rs921412266 2924 dbSNP
rs954222025 2925 dbSNP
rs1301070762 2929 dbSNP
rs987062136 2934 dbSNP
rs912845351 2935 dbSNP
rs1279391357 2957 dbSNP
rs924361976 2962 dbSNP
rs1213007684 2965 dbSNP
rs945652324 2967 dbSNP
rs1241896566 2975 dbSNP
rs1042747756 2979 dbSNP
rs1445917994 2979 dbSNP
rs934336335 2987 dbSNP
rs1374455790 2990 dbSNP
rs1261904478 3012 dbSNP
rs987136788 3013 dbSNP
rs1394921207 3019 dbSNP
rs1353822048 3031 dbSNP
rs1215381378 3032 dbSNP
rs1315360536 3039 dbSNP
rs1383388675 3041 dbSNP
rs1260631313 3054 dbSNP
rs149033053 3060 dbSNP
rs949272889 3070 dbSNP
rs936735186 3074 dbSNP
rs144626839 3075 dbSNP
rs1302936048 3080 dbSNP
rs1348339253 3088 dbSNP
rs1236131345 3090 dbSNP
rs1283832012 3093 dbSNP
rs554820 3095 dbSNP
rs1013409081 3098 dbSNP
rs1161215656 3100 dbSNP
rs1046309634 3101 dbSNP
rs1449366841 3117 dbSNP
rs557594841 3130 dbSNP
rs552403646 3132 dbSNP
rs1253174620 3134 dbSNP
rs1455005277 3144 dbSNP
rs1004813690 3149 dbSNP
rs1016317766 3150 dbSNP
rs1419207727 3153 dbSNP
rs1156969562 3154 dbSNP
rs886559499 3165 dbSNP
rs1367654294 3175 dbSNP
rs1459887244 3180 dbSNP
rs1405840028 3202 dbSNP
rs553253 3206 dbSNP
rs1442856080 3208 dbSNP
rs536293498 3210 dbSNP
rs895724703 3213 dbSNP
rs1239756235 3216 dbSNP
rs537494386 3218 dbSNP
rs557075728 3220 dbSNP
rs1308371343 3230 dbSNP
rs1212478906 3236 dbSNP
rs1376946583 3239 dbSNP
rs567449632 3244 dbSNP
rs1028780472 3251 dbSNP
rs138750993 3257 dbSNP
rs1248940643 3261 dbSNP
rs544071230 3262 dbSNP
rs979034049 3264 dbSNP
rs1221935313 3268 dbSNP
rs552941103 3268 dbSNP
rs912739270 3269 dbSNP
rs1031416311 3272 dbSNP
rs1264576674 3273 dbSNP
rs967337245 3280 dbSNP
rs1395527028 3283 dbSNP
rs1391695640 3285 dbSNP
rs9578 3290 dbSNP
rs1353434055 3291 dbSNP
rs1238680463 3297 dbSNP
rs925269499 3307 dbSNP
rs936705874 3308 dbSNP
rs1055129909 3311 dbSNP
rs774305055 3315 dbSNP
rs949500644 3316 dbSNP
rs1387230870 3317 dbSNP
rs752228493 3319 dbSNP
rs1196707302 3321 dbSNP
rs1164366951 3322 dbSNP
rs545463407 3328 dbSNP
rs1474539034 3334 dbSNP
rs545379536 3337 dbSNP
rs559163039 3338 dbSNP
rs1187818081 3339 dbSNP
rs55861682 3352 dbSNP
rs930820564 3355 dbSNP
rs1048403225 3361 dbSNP
rs1168614116 3362 dbSNP
rs1005187722 3364 dbSNP
rs1037651044 3365 dbSNP
rs1299718585 3384 dbSNP
rs180865602 3388 dbSNP
rs1306452271 3393 dbSNP
rs995880707 3396 dbSNP
rs1028664949 3398 dbSNP
rs1313393993 3400 dbSNP
rs890176632 3405 dbSNP
rs1356829501 3412 dbSNP
rs1228487703 3421 dbSNP
rs1008662220 3432 dbSNP
rs1294445012 3433 dbSNP
rs1020177490 3436 dbSNP
rs966927878 3453 dbSNP
rs895106420 3457 dbSNP
rs978739467 3459 dbSNP
rs1022878419 3464 dbSNP
rs1484891768 3465 dbSNP
rs1258527490 3473 dbSNP
rs1210817818 3475 dbSNP
rs1457257110 3475 dbSNP
rs1486714638 3478 dbSNP
rs1184809933 3482 dbSNP
rs11545292 3484 dbSNP
rs1316093663 3487 dbSNP
rs1196676401 3491 dbSNP
rs1172802273 3494 dbSNP
rs1429380831 3494 dbSNP
rs777957277 3497 dbSNP
rs1433804141 3500 dbSNP
rs1000014912 3502 dbSNP
rs958030713 3504 dbSNP
rs1428066269 3506 dbSNP
rs141882667 3510 dbSNP
rs146235341 3511 dbSNP
rs540305168 3514 dbSNP
rs1383626547 3516 dbSNP
rs1300787779 3518 dbSNP
rs1346177699 3523 dbSNP
rs1018653739 3526 dbSNP
rs1314516910 3528 dbSNP
rs949473243 3528 dbSNP
rs982239105 3530 dbSNP
rs1214236182 3534 dbSNP
rs1241668072 3539 dbSNP
rs1486228585 3542 dbSNP
rs1464463685 3545 dbSNP
rs1339292627 3549 dbSNP
rs907684923 3549 dbSNP
rs974414490 3552 dbSNP
rs1448084218 3558 dbSNP
rs1398918131 3561 dbSNP
rs1301804998 3564 dbSNP
rs920855780 3570 dbSNP
rs940569073 3579 dbSNP
rs1345326205 3583 dbSNP
rs952424272 3592 dbSNP
rs374505905 3594 dbSNP
rs1216026092 3595 dbSNP
rs908008384 3596 dbSNP
rs1304681216 3597 dbSNP
rs1370176988 3598 dbSNP
rs1278526478 3605 dbSNP
rs1284115201 3607 dbSNP
rs78927908 3609 dbSNP
rs1210625167 3613 dbSNP
rs12759420 3617 dbSNP
rs899042141 3619 dbSNP
rs1468243520 3621 dbSNP
rs931892724 3632 dbSNP
rs1248307786 3635 dbSNP
rs1050060645 3638 dbSNP
rs890147650 3639 dbSNP
rs532307040 3640 dbSNP
rs1162235730 3641 dbSNP
rs552079137 3643 dbSNP
rs1235864058 3645 dbSNP
rs1461701164 3651 dbSNP
rs867453144 3652 dbSNP
rs1327488631 3659 dbSNP
rs1486970483 3667 dbSNP
rs1194663213 3668 dbSNP
rs1020061887 3671 dbSNP
rs902675449 3673 dbSNP
rs1423295074 3678 dbSNP
rs1374624596 3680 dbSNP
rs569180278 3683 dbSNP
rs1053060802 3687 dbSNP
rs1334244931 3690 dbSNP
rs891592701 3691 dbSNP
rs201290834 3707 dbSNP
rs1008693921 3713 dbSNP
rs1426457862 3716 dbSNP
rs1414454922 3728 dbSNP
rs1174736130 3729 dbSNP
rs1032476872 3736 dbSNP
rs958251345 3737 dbSNP
rs531485103 3738 dbSNP
rs1023572003 3739 dbSNP
rs1416897650 3740 dbSNP
rs1356931676 3744 dbSNP
rs964470388 3750 dbSNP
rs1355443083 3751 dbSNP
rs970779675 3759 dbSNP
rs1027765407 3760 dbSNP
rs878920997 3763 dbSNP
rs951759913 3766 dbSNP
rs982594402 3767 dbSNP
rs370996888 3769 dbSNP
rs1273536768 3773 dbSNP
rs1483908257 3774 dbSNP
rs1256639274 3775 dbSNP
rs148037917 3777 dbSNP
rs1285018420 3778 dbSNP
rs973197337 3780 dbSNP
rs1168131404 3783 dbSNP
rs12748773 3786 dbSNP
rs1391228528 3787 dbSNP
rs920440919 3789 dbSNP
rs1172318208 3790 dbSNP
rs931863279 3791 dbSNP
rs1276512456 3792 dbSNP
rs141870321 3795 dbSNP
rs925251199 3796 dbSNP
rs1270935660 3797 dbSNP
rs1430354785 3797 dbSNP
rs756997988 3797 dbSNP
rs1217567513 3799 dbSNP
rs546641721 3800 dbSNP
rs1348558904 3801 dbSNP
rs935350165 3801 dbSNP
rs891748086 3802 dbSNP
rs183887864 3803 dbSNP
rs539260182 3804 dbSNP
rs1467063046 3805 dbSNP
rs902895284 3806 dbSNP
rs1477947866 3809 dbSNP
rs1040210133 3810 dbSNP
rs557682299 3811 dbSNP
rs1053857178 3812 dbSNP
rs893999535 3816 dbSNP
rs1302457523 3818 dbSNP
rs1371449940 3821 dbSNP
rs1235401010 3828 dbSNP
rs1277640497 3829 dbSNP
rs1027426397 3830 dbSNP
rs1421024016 3833 dbSNP
rs1158771295 3835 dbSNP
rs887405135 3846 dbSNP
rs1012437533 3854 dbSNP
rs1023873250 3862 dbSNP
rs575919760 3868 dbSNP
rs779172674 3876 dbSNP
rs1469714852 3877 dbSNP
rs1003506911 3882 dbSNP
rs1390883672 3886 dbSNP
rs1015345602 3897 dbSNP
rs538125159 3898 dbSNP
rs753512273 3900 dbSNP
rs973503140 3900 dbSNP
rs1240936811 3905 dbSNP
rs1285472614 3907 dbSNP
rs554630441 3909 dbSNP
rs1304824578 3912 dbSNP
rs979884834 3916 dbSNP
rs953221648 3917 dbSNP
rs986038533 3924 dbSNP
rs1451413540 3925 dbSNP
rs34373858 3925 dbSNP
rs577866496 3926 dbSNP
rs935321617 3930 dbSNP
rs370565343 3938 dbSNP
rs1489030982 3946 dbSNP
rs1211957095 3950 dbSNP
rs150641619 3954 dbSNP
rs1437798378 3960 dbSNP
rs924286789 3960 dbSNP
rs1379225781 3973 dbSNP
rs913133745 3974 dbSNP
rs1414350894 3976 dbSNP
rs1474233874 3978 dbSNP
rs944656070 3980 dbSNP
rs560331215 3987 dbSNP
rs1369229031 3995 dbSNP
rs1459268238 4001 dbSNP
rs1296280174 4007 dbSNP
rs1395503619 4009 dbSNP
rs935732725 4012 dbSNP
rs1054159646 4020 dbSNP
rs1313020088 4024 dbSNP
rs3838994 4024 dbSNP
rs397810134 4024 dbSNP
rs1323195350 4029 dbSNP
rs1404516498 4032 dbSNP
rs199602999 4032 dbSNP
rs1311701767 4035 dbSNP
rs1321394851 4042 dbSNP
rs1040283183 4043 dbSNP
rs1447504445 4045 dbSNP
rs1308539058 4048 dbSNP
rs1254511157 4050 dbSNP
rs554011934 4055 dbSNP
rs893966098 4065 dbSNP
rs577011337 4074 dbSNP
rs1256925620 4079 dbSNP
rs1285034986 4080 dbSNP
rs777392907 4082 dbSNP
rs1168585811 4085 dbSNP
rs1355963298 4087 dbSNP
rs758916331 4088 dbSNP
rs1012406365 4090 dbSNP
rs1373502326 4095 dbSNP
rs1049275841 4102 dbSNP
rs1302960413 4104 dbSNP
rs1380697707 4112 dbSNP
rs1045643557 4114 dbSNP
rs1380225206 4116 dbSNP
rs906750626 4120 dbSNP
rs1275623290 4121 dbSNP
rs1294333802 4127 dbSNP
rs1364929176 4128 dbSNP
rs1229545602 4129 dbSNP
rs1458607333 4135 dbSNP
rs1198580496 4137 dbSNP
rs543352122 4142 dbSNP
rs1014627123 4143 dbSNP
rs1189063325 4150 dbSNP
rs1368659415 4159 dbSNP
rs371854069 4160 dbSNP
rs1261254539 4167 dbSNP
rs962063093 4169 dbSNP
rs994910184 4171 dbSNP
rs1027775108 4172 dbSNP
rs747718027 4175 dbSNP
rs1434096235 4178 dbSNP
rs1330616584 4188 dbSNP
rs769418796 4189 dbSNP
rs1032839557 4190 dbSNP
rs1444352177 4192 dbSNP
rs1287955449 4193 dbSNP
rs1397830183 4198 dbSNP
rs985925221 4205 dbSNP
rs531649407 4207 dbSNP
rs1340083259 4209 dbSNP
rs965962383 4215 dbSNP
rs1302504302 4216 dbSNP
rs912535259 4216 dbSNP
rs988536507 4216 dbSNP
rs1267564627 4223 dbSNP
rs190565505 4223 dbSNP
rs944063197 4226 dbSNP
rs1210813642 4228 dbSNP
rs563617780 4228 dbSNP
rs3207256 4234 dbSNP
rs1477538745 4239 dbSNP
rs921885275 4241 dbSNP
rs3180195 4243 dbSNP
rs1048909796 4245 dbSNP
rs931803373 4245 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HEK293S
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in GSM1084069. RNA binding protein: AGO2. Condition:CLIP_emetine_SigmaAb ...

- Karginov FV; Hannon GJ, 2013, Genes & development.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' ucggucGGUUGAGUGUCACGUCu 5'
                ||||  :: ||||||| 
Target 5' ------CCAAGCUGGAGUGCAGu 3'
1 - 17
Article - Karginov FV; Hannon GJ
- Genes & development, 2013
When adapting to environmental stress, cells attenuate and reprogram their translational output. In part, these altered translation profiles are established through changes in the interactions between RNA-binding proteins and mRNAs. The Argonaute 2 (Ago2)/microRNA (miRNA) machinery has been shown to participate in stress-induced translational up-regulation of a particular mRNA, CAT-1; however, a detailed, transcriptome-wide understanding of the involvement of Ago2 in the process has been lacking. Here, we profiled the overall changes in Ago2-mRNA interactions upon arsenite stress by cross-linking immunoprecipitation (CLIP) followed by high-throughput sequencing (CLIP-seq). Ago2 displayed a significant remodeling of its transcript occupancy, with the majority of 3' untranslated region (UTR) and coding sequence (CDS) sites exhibiting stronger interaction. Interestingly, target sites that were destined for release from Ago2 upon stress were depleted in miRNA complementarity signatures, suggesting an alternative mode of interaction. To compare the changes in Ago2-binding patterns across transcripts with changes in their translational states, we measured mRNA profiles on ribosome/polysome gradients by RNA sequencing (RNA-seq). Increased Ago2 occupancy correlated with stronger repression of translation for those mRNAs, as evidenced by a shift toward lighter gradient fractions upon stress, while release of Ago2 was associated with the limited number of transcripts that remained translated. Taken together, these data point to a role for Ago2 and the mammalian miRNAs in mediating the translational component of the stress response.
LinkOut: [PMID: 23824327]
CLIP-seq Support 1 for dataset GSM4903833
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_a
Location of target site NM_001166007 | 3UTR | UUGUUGCCCAAGCUGGAGUGCA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM4903834
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_b
Location of target site NM_001166007 | 3UTR | GUUGCCCAAGCUGGAGUGCA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 3 for dataset GSM4903835
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_c
Location of target site NM_001166007 | 3UTR | UGUUGCCCAAGCUGGAGUGCA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 4 for dataset GSM4903837
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / 124_TD_21_b
Location of target site NM_001166007 | 3UTR | GUUGCCCAAGCUGGAGUGCAGUGGCGCGAUCUC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 5 for dataset GSM4903838
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / 124_TD_21_c
Location of target site NM_001166007 | 3UTR | UGCCCAAGCUGGAGUGCAGU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 6 for dataset GSM1084069
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_emetine_SigmaAb
Location of target site ENST00000373798.1 | 3UTR | CCAAGCUGGAGUGCAGUGGCGCGAUCU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
296 hsa-miR-4793-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT092332 EDEM1 ER degradation enhancing alpha-mannosidase like protein 1 2 6
MIRT131237 ATG2A autophagy related 2A 2 2
MIRT145926 ANKFY1 ankyrin repeat and FYVE domain containing 1 2 2
MIRT206559 SOCS5 suppressor of cytokine signaling 5 2 8
MIRT226455 TP53INP1 tumor protein p53 inducible nuclear protein 1 2 2
MIRT337662 ZNF695 zinc finger protein 695 2 2
MIRT405828 SIX4 SIX homeobox 4 2 2
MIRT455113 RILPL1 Rab interacting lysosomal protein like 1 2 2
MIRT456756 TMEM239 transmembrane protein 239 2 4
MIRT457974 RGS9BP regulator of G protein signaling 9 binding protein 2 2
MIRT458173 LYRM4 LYR motif containing 4 2 4
MIRT458245 SLC9A7 solute carrier family 9 member A7 2 2
MIRT466145 TMEM120B transmembrane protein 120B 2 2
MIRT474981 KATNAL1 katanin catalytic subunit A1 like 1 2 2
MIRT475601 HMGB2 high mobility group box 2 2 4
MIRT480759 BMP3 bone morphogenetic protein 3 2 4
MIRT481156 AVL9 AVL9 cell migration associated 2 2
MIRT482155 AK2 adenylate kinase 2 2 2
MIRT488386 VAV3 vav guanine nucleotide exchange factor 3 2 6
MIRT496575 KIF18B kinesin family member 18B 2 2
MIRT498411 TXNDC16 thioredoxin domain containing 16 2 4
MIRT504547 ZNF417 zinc finger protein 417 2 6
MIRT505417 TCF7L2 transcription factor 7 like 2 2 2
MIRT509349 ALDH9A1 aldehyde dehydrogenase 9 family member A1 2 6
MIRT512164 CD164 CD164 molecule 2 6
MIRT517238 PRIM1 DNA primase subunit 1 2 2
MIRT518671 KCNMB1 potassium calcium-activated channel subfamily M regulatory beta subunit 1 2 2
MIRT519298 MLH1 mutL homolog 1 2 2
MIRT523662 FOSL2 FOS like 2, AP-1 transcription factor subunit 2 2
MIRT525452 GPATCH2L G-patch domain containing 2 like 2 2
MIRT539847 ZNF766 zinc finger protein 766 2 2
MIRT540076 SSH3 slingshot protein phosphatase 3 2 2
MIRT540320 PIGR polymeric immunoglobulin receptor 2 2
MIRT540548 MAGI3 membrane associated guanylate kinase, WW and PDZ domain containing 3 2 2
MIRT540759 UTP6 UTP6, small subunit processome component 2 2
MIRT541545 HIATL2 major facilitator superfamily domain containing 14C 2 2
MIRT541553 SLC35E1 solute carrier family 35 member E1 2 2
MIRT541666 ATP8B3 ATPase phospholipid transporting 8B3 2 4
MIRT541722 TFDP2 transcription factor Dp-2 2 2
MIRT541800 DUSP28 dual specificity phosphatase 28 2 2
MIRT541816 SMU1 DNA replication regulator and spliceosomal factor 2 2
MIRT541907 VWA7 von Willebrand factor A domain containing 7 2 2
MIRT542154 UGDH UDP-glucose 6-dehydrogenase 2 2
MIRT542207 C14orf142 GON7, KEOPS complex subunit homolog 2 2
MIRT542233 FUT9 fucosyltransferase 9 2 2
MIRT542320 SERPING1 serpin family G member 1 2 2
MIRT542369 PAICS phosphoribosylaminoimidazole carboxylase and phosphoribosylaminoimidazolesuccinocarboxamide synthase 2 2
MIRT542476 APOC3 apolipoprotein C3 2 2
MIRT542641 TIMM8A translocase of inner mitochondrial membrane 8A 2 2
MIRT542660 TAF11 TATA-box binding protein associated factor 11 2 2
MIRT542749 PRRG4 proline rich and Gla domain 4 2 4
MIRT542789 PLEKHA3 pleckstrin homology domain containing A3 2 2
MIRT545442 FGFRL1 fibroblast growth factor receptor like 1 2 2
MIRT546206 TOR1AIP2 torsin 1A interacting protein 2 2 2
MIRT552270 RAB3D RAB3D, member RAS oncogene family 2 2
MIRT552655 ZADH2 zinc binding alcohol dehydrogenase domain containing 2 2 2
MIRT554134 SMARCA5 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 2 2
MIRT556795 KIAA1958 KIAA1958 2 2
MIRT564762 ZHX3 zinc fingers and homeoboxes 3 2 2
MIRT569428 STX7 syntaxin 7 2 2
MIRT573245 ZBTB46 zinc finger and BTB domain containing 46 2 2
MIRT607390 LANCL3 LanC like 3 2 2
MIRT607430 NOTCH2NL notch 2 N-terminal like 2 2
MIRT607452 ZNF543 zinc finger protein 543 2 2
MIRT607580 TANGO2 transport and golgi organization 2 homolog 2 2
MIRT607748 ANGPT4 angiopoietin 4 2 2
MIRT607907 SPRYD4 SPRY domain containing 4 2 2
MIRT608703 GMPR guanosine monophosphate reductase 2 2
MIRT612127 NDUFA10 NADH:ubiquinone oxidoreductase subunit A10 2 2
MIRT612786 MAP3K9 mitogen-activated protein kinase kinase kinase 9 2 4
MIRT616692 LPL lipoprotein lipase 2 2
MIRT617045 ZNF610 zinc finger protein 610 2 2
MIRT617091 ZNF43 zinc finger protein 43 2 2
MIRT617314 MBOAT1 membrane bound O-acyltransferase domain containing 1 2 2
MIRT617355 MELK maternal embryonic leucine zipper kinase 2 2
MIRT617486 ALG9 ALG9, alpha-1,2-mannosyltransferase 2 2
MIRT617579 NDUFB5 NADH:ubiquinone oxidoreductase subunit B5 2 2
MIRT617669 RSRC1 arginine and serine rich coiled-coil 1 2 2
MIRT617722 TRAPPC2 trafficking protein particle complex 2 2 4
MIRT617893 PTCHD3 patched domain containing 3 2 2
MIRT617982 ZNF234 zinc finger protein 234 2 4
MIRT618434 MYLK3 myosin light chain kinase 3 2 4
MIRT618732 HIST1H2AH histone cluster 1 H2A family member h 2 2
MIRT619045 CASS4 Cas scaffolding protein family member 4 2 2
MIRT619573 ATAT1 alpha tubulin acetyltransferase 1 2 4
MIRT619671 CYP1A2 cytochrome P450 family 1 subfamily A member 2 2 2
MIRT619887 ABHD17B abhydrolase domain containing 17B 2 2
MIRT620519 SNRPD1 small nuclear ribonucleoprotein D1 polypeptide 2 4
MIRT620535 AVPR1A arginine vasopressin receptor 1A 2 2
MIRT620996 C19orf52 translocase of inner mitochondrial membrane 29 2 2
MIRT621304 YIPF4 Yip1 domain family member 4 2 2
MIRT622086 SRPX2 sushi repeat containing protein, X-linked 2 2 2
MIRT622168 SMYD1 SET and MYND domain containing 1 2 2
MIRT622543 PXMP4 peroxisomal membrane protein 4 2 2
MIRT622761 PGM3 phosphoglucomutase 3 2 2
MIRT622885 PDCL3 phosducin like 3 2 4
MIRT623130 NDUFC2 NADH:ubiquinone oxidoreductase subunit C2 2 2
MIRT624840 ACAP2 ArfGAP with coiled-coil, ankyrin repeat and PH domains 2 2 2
MIRT625047 MBD3 methyl-CpG binding domain protein 3 2 2
MIRT625059 ZNF556 zinc finger protein 556 2 2
MIRT625508 PPAPDC1A phospholipid phosphatase 4 2 2
MIRT625573 ANKRD42 ankyrin repeat domain 42 2 2
MIRT626133 SNRNP48 small nuclear ribonucleoprotein U11/U12 subunit 48 2 2
MIRT626327 LRTOMT leucine rich transmembrane and O-methyltransferase domain containing 2 2
MIRT626765 CDC14B cell division cycle 14B 2 2
MIRT626798 CSE1L chromosome segregation 1 like 2 2
MIRT627212 ZC3H12B zinc finger CCCH-type containing 12B 2 2
MIRT627225 ZBTB8B zinc finger and BTB domain containing 8B 2 4
MIRT627256 XKR4 XK related 4 2 2
MIRT628190 GATSL2 cytosolic arginine sensor for mTORC1 subunit 2 2 2
MIRT628466 AHSA2 activator of HSP90 ATPase homolog 2 2 2
MIRT628627 CCT4 chaperonin containing TCP1 subunit 4 2 2
MIRT629040 KLLN killin, p53-regulated DNA replication inhibitor 2 2
MIRT630847 ACACB acetyl-CoA carboxylase beta 2 2
MIRT631721 RNASEH2B ribonuclease H2 subunit B 2 2
MIRT632264 USP1 ubiquitin specific peptidase 1 2 4
MIRT632571 POLQ DNA polymerase theta 2 2
MIRT633992 SLC35E2 solute carrier family 35 member E2 2 2
MIRT635211 ZNF286A zinc finger protein 286A 2 4
MIRT635249 ELOVL6 ELOVL fatty acid elongase 6 2 4
MIRT635261 FBXL20 F-box and leucine rich repeat protein 20 2 2
MIRT635283 GK5 glycerol kinase 5 (putative) 2 2
MIRT635663 DTX3L deltex E3 ubiquitin ligase 3L 2 2
MIRT636251 SEC63 SEC63 homolog, protein translocation regulator 2 2
MIRT636564 EPB41 erythrocyte membrane protein band 4.1 2 2
MIRT636814 TBC1D24 TBC1 domain family member 24 2 2
MIRT637358 ZNF460 zinc finger protein 460 2 2
MIRT637473 DEFB105B defensin beta 105B 2 4
MIRT637505 DEFB105A defensin beta 105A 2 4
MIRT637861 SC5D sterol-C5-desaturase 2 2
MIRT638080 ZNF652 zinc finger protein 652 2 2
MIRT638096 ZBTB8A zinc finger and BTB domain containing 8A 2 2
MIRT638174 TMED4 transmembrane p24 trafficking protein 4 2 2
MIRT638201 TAF13 TATA-box binding protein associated factor 13 2 2
MIRT638278 SH2B3 SH2B adaptor protein 3 2 2
MIRT638714 FUT11 fucosyltransferase 11 2 2
MIRT638852 CLMP CXADR like membrane protein 2 2
MIRT639815 TMED8 transmembrane p24 trafficking protein family member 8 2 2
MIRT640879 ENTPD1 ectonucleoside triphosphate diphosphohydrolase 1 2 2
MIRT640937 FAM129A family with sequence similarity 129 member A 2 2
MIRT640971 ORAI2 ORAI calcium release-activated calcium modulator 2 2 2
MIRT641642 GNAZ G protein subunit alpha z 2 2
MIRT641931 SLC25A16 solute carrier family 25 member 16 2 2
MIRT642136 CRY2 cryptochrome circadian clock 2 2 2
MIRT643199 JAK3 Janus kinase 3 2 2
MIRT643256 ZNF566 zinc finger protein 566 2 2
MIRT643378 TRIM16L tripartite motif containing 16 like 2 2
MIRT643683 AMER3 APC membrane recruitment protein 3 2 2
MIRT643728 MCMDC2 minichromosome maintenance domain containing 2 2 2
MIRT643949 CCDC141 coiled-coil domain containing 141 2 2
MIRT644915 SERF1B small EDRK-rich factor 1B 2 2
MIRT645163 NOL9 nucleolar protein 9 2 2
MIRT645547 PABPC1L2B poly(A) binding protein cytoplasmic 1 like 2B 2 2
MIRT645550 PABPC1L2A poly(A) binding protein cytoplasmic 1 like 2A 2 2
MIRT645572 TACR2 tachykinin receptor 2 2 2
MIRT646697 SERF1A small EDRK-rich factor 1A 2 2
MIRT647806 FRMD8 FERM domain containing 8 2 2
MIRT647903 CIRH1A UTP4, small subunit processome component 2 2
MIRT648978 ACAD8 acyl-CoA dehydrogenase family member 8 2 2
MIRT649907 SLFN12L schlafen family member 12 like 2 2
MIRT650224 SIGLEC9 sialic acid binding Ig like lectin 9 2 4
MIRT651880 UGGT1 UDP-glucose glycoprotein glucosyltransferase 1 2 2
MIRT651935 UBN1 ubinuclein 1 2 2
MIRT652839 TACO1 translational activator of cytochrome c oxidase I 2 2
MIRT652994 SUGT1 SGT1 homolog, MIS12 kinetochore complex assembly cochaperone 2 2
MIRT654800 PRICKLE1 prickle planar cell polarity protein 1 2 2
MIRT655591 OTUD7B OTU deubiquitinase 7B 2 2
MIRT658760 EIF4EBP2 eukaryotic translation initiation factor 4E binding protein 2 2 2
MIRT659358 CRKL CRK like proto-oncogene, adaptor protein 2 2
MIRT660717 AMER1 APC membrane recruitment protein 1 2 2
MIRT660737 ALG14 ALG14, UDP-N-acetylglucosaminyltransferase subunit 2 2
MIRT661088 TMEM145 transmembrane protein 145 2 2
MIRT661176 S1PR2 sphingosine-1-phosphate receptor 2 2 2
MIRT662005 ZNF445 zinc finger protein 445 2 2
MIRT662178 KIAA1210 KIAA1210 2 2
MIRT662270 OR51E2 olfactory receptor family 51 subfamily E member 2 2 2
MIRT663046 SLC16A4 solute carrier family 16 member 4 2 2
MIRT663476 POFUT2 protein O-fucosyltransferase 2 2 2
MIRT664039 RPL27A ribosomal protein L27a 2 2
MIRT664096 ZDHHC24 zinc finger DHHC-type containing 24 2 2
MIRT664109 FUT1 fucosyltransferase 1 (H blood group) 2 2
MIRT664317 CD209 CD209 molecule 2 2
MIRT664455 BBS5 Bardet-Biedl syndrome 5 2 2
MIRT664595 HSD17B12 hydroxysteroid 17-beta dehydrogenase 12 2 4
MIRT664694 DBF4 DBF4 zinc finger 2 2
MIRT665162 SF3A1 splicing factor 3a subunit 1 2 2
MIRT665214 RBM22 RNA binding motif protein 22 2 2
MIRT665254 ZNF286B zinc finger protein 286B 2 2
MIRT665268 ZFP69B ZFP69 zinc finger protein B 2 2
MIRT665606 TTC39A tetratricopeptide repeat domain 39A 2 2
MIRT665830 TIMELESS timeless circadian clock 2 2
MIRT666201 SMARCC1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 1 2 2
MIRT666546 RNF115 ring finger protein 115 2 2
MIRT666602 REEP3 receptor accessory protein 3 2 2
MIRT666862 POU2F3 POU class 2 homeobox 3 2 4
MIRT666886 POLA2 DNA polymerase alpha 2, accessory subunit 2 2
MIRT667158 NRXN3 neurexin 3 2 2
MIRT667252 NEK9 NIMA related kinase 9 2 2
MIRT667419 MFSD2A major facilitator superfamily domain containing 2A 2 2
MIRT667434 METTL8 methyltransferase like 8 2 2
MIRT668023 HAUS3 HAUS augmin like complex subunit 3 2 2
MIRT668062 GPR75 G protein-coupled receptor 75 2 2
MIRT668070 GOSR1 golgi SNAP receptor complex member 1 2 2
MIRT668607 EHD4 EH domain containing 4 2 4
MIRT668694 DNAL1 dynein axonemal light chain 1 2 2
MIRT668782 DAAM1 dishevelled associated activator of morphogenesis 1 2 2
MIRT669037 CHEK1 checkpoint kinase 1 2 2
MIRT669044 CHAF1B chromatin assembly factor 1 subunit B 2 4
MIRT669156 CCNG1 cyclin G1 2 2
MIRT670090 ABCF3 ATP binding cassette subfamily F member 3 2 4
MIRT670206 SLC24A4 solute carrier family 24 member 4 2 2
MIRT672488 FUS FUS RNA binding protein 2 2
MIRT673830 SLC11A2 solute carrier family 11 member 2 2 2
MIRT675481 VEGFC vascular endothelial growth factor C 2 2
MIRT675634 HACE1 HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1 2 2
MIRT677913 HIST1H2BN histone cluster 1 H2B family member n 2 2
MIRT678420 ANKRD36 ankyrin repeat domain 36 2 2
MIRT678626 OLFML2A olfactomedin like 2A 2 2
MIRT678791 NUPL2 nucleoporin like 2 2 2
MIRT679561 LIN9 lin-9 DREAM MuvB core complex component 2 2
MIRT680743 CA5B carbonic anhydrase 5B 2 2
MIRT682481 LIX1L limb and CNS expressed 1 like 2 4
MIRT682701 PSMD9 proteasome 26S subunit, non-ATPase 9 2 2
MIRT682759 MDM2 MDM2 proto-oncogene 2 2
MIRT682811 TMCO1 transmembrane and coiled-coil domains 1 2 2
MIRT682847 DNAJC28 DnaJ heat shock protein family (Hsp40) member C28 2 2
MIRT682896 XIAP X-linked inhibitor of apoptosis 2 2
MIRT682916 FAM73A mitoguardin 1 2 2
MIRT682935 ZNF292 zinc finger protein 292 2 2
MIRT682953 RPL12 ribosomal protein L12 2 2
MIRT682972 NF2 neurofibromin 2 2 2
MIRT683033 SUSD5 sushi domain containing 5 2 2
MIRT683081 A1BG alpha-1-B glycoprotein 2 2
MIRT683105 TIMM10B translocase of inner mitochondrial membrane 10B 2 2
MIRT686640 TMEM184C transmembrane protein 184C 2 2
MIRT687444 NR3C1 nuclear receptor subfamily 3 group C member 1 2 2
MIRT688401 EMC8 ER membrane protein complex subunit 8 2 2
MIRT688886 C3orf70 chromosome 3 open reading frame 70 2 2
MIRT689148 IRAK1BP1 interleukin 1 receptor associated kinase 1 binding protein 1 2 2
MIRT689234 RPS19 ribosomal protein S19 2 2
MIRT689306 C5AR2 complement component 5a receptor 2 2 2
MIRT689364 ZNF101 zinc finger protein 101 2 2
MIRT689498 SCARF1 scavenger receptor class F member 1 2 2
MIRT689655 RBM23 RNA binding motif protein 23 2 2
MIRT689897 SOD2 superoxide dismutase 2 2 2
MIRT690150 PPIL6 peptidylprolyl isomerase like 6 2 2
MIRT690601 C17orf105 chromosome 17 open reading frame 105 2 2
MIRT690805 FAHD1 fumarylacetoacetate hydrolase domain containing 1 2 2
MIRT690946 GLG1 golgi glycoprotein 1 2 2
MIRT691388 ATP13A4 ATPase 13A4 2 2
MIRT691408 DNA2 DNA replication helicase/nuclease 2 2 2
MIRT692175 LRRC3C leucine rich repeat containing 3C 2 2
MIRT692235 ALDH1B1 aldehyde dehydrogenase 1 family member B1 2 2
MIRT693283 GINM1 glycoprotein integral membrane 1 2 2
MIRT693439 TPGS1 tubulin polyglutamylase complex subunit 1 2 2
MIRT693460 HIST1H2AG histone cluster 1 H2A family member g 2 2
MIRT693768 ZNF383 zinc finger protein 383 2 2
MIRT694018 PPIL4 peptidylprolyl isomerase like 4 2 2
MIRT694236 ZNF749 zinc finger protein 749 2 2
MIRT694321 NLRP9 NLR family pyrin domain containing 9 2 2
MIRT694347 CHST6 carbohydrate sulfotransferase 6 2 2
MIRT694430 MCF2L2 MCF.2 cell line derived transforming sequence-like 2 2 2
MIRT695763 WDR35 WD repeat domain 35 2 2
MIRT696167 TIPIN TIMELESS interacting protein 2 2
MIRT696417 DOCK7 dedicator of cytokinesis 7 2 2
MIRT696543 C3 complement C3 2 2
MIRT696998 CCDC80 coiled-coil domain containing 80 2 2
MIRT697232 ZYG11A zyg-11 family member A, cell cycle regulator 2 2
MIRT697806 UBXN2A UBX domain protein 2A 2 2
MIRT697944 TVP23C trans-golgi network vesicle protein 23 homolog C 2 2
MIRT698161 TNFRSF13C TNF receptor superfamily member 13C 2 2
MIRT698778 STK4 serine/threonine kinase 4 2 2
MIRT700259 RBM12B RNA binding motif protein 12B 2 2
MIRT700970 PDK3 pyruvate dehydrogenase kinase 3 2 2
MIRT701251 NUP35 nucleoporin 35 2 2
MIRT701607 MYPN myopalladin 2 2
MIRT702457 KIAA1467 family with sequence similarity 234 member B 2 2
MIRT702613 ITPRIPL2 inositol 1,4,5-trisphosphate receptor interacting protein like 2 2 2
MIRT702691 IRGQ immunity related GTPase Q 2 2
MIRT702934 HMX3 H6 family homeobox 3 2 2
MIRT702991 HERPUD2 HERPUD family member 2 2 2
MIRT703148 GPR137C G protein-coupled receptor 137C 2 2
MIRT703980 EMC1 ER membrane protein complex subunit 1 2 2
MIRT704569 CLPX caseinolytic mitochondrial matrix peptidase chaperone subunit 2 2
MIRT705065 C4orf32 family with sequence similarity 241 member A 2 2
MIRT705447 ATL2 atlastin GTPase 2 2 2
MIRT705856 AFF3 AF4/FMR2 family member 3 2 2
MIRT705886 ADIPOR2 adiponectin receptor 2 2 2
MIRT714370 HP1BP3 heterochromatin protein 1 binding protein 3 2 2
MIRT715784 PHF12 PHD finger protein 12 2 2
MIRT715864 KIAA0101 PCNA clamp associated factor 2 2
MIRT715947 NUP93 nucleoporin 93 2 2
MIRT716132 THOC5 THO complex 5 2 2
MIRT717084 EBF4 early B-cell factor 4 2 2
MIRT725424 HNRNPA3 heterogeneous nuclear ribonucleoprotein A3 2 2
MIRT736091 GREM1 gremlin 1, DAN family BMP antagonist 3 0
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-4793 Dabrafenib 44462760 NSC764134 approved sensitive cell line (A375)
hsa-miR-4793-3p Gefitinib 123631 NSC715055 approved sensitive cell line (HCC827)
hsa-miR-4793-3p Doxorubicin 31703 NSC123127 approved resistant cell line (BAS)
hsa-miR-4793-3p Osimertinib 71496458 NSC779217 approved sensitive cell line (H1975)

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