pre-miRNA Information
pre-miRNA hsa-mir-6501   
Genomic Coordinates chr21: 33550662 - 33550728
Description Homo sapiens miR-6501 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-6501-5p
Sequence 3| AGUUGCCAGGGCUGCCUUUGGU |24
Evidence Experimental
Experiments Illumina
DRVs in miRNA
Mutant ID Mutant Position Mutant Source
1055619 20 ClinVar
COSM5974214 5 COSMIC
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs756127353 5 dbSNP
rs764400023 6 dbSNP
rs753967693 8 dbSNP
rs1283296362 14 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol CDK4   
Synonyms CMM3, PSK-J3
Description cyclin dependent kinase 4
Transcript NM_000075   
Expression
Putative miRNA Targets on CDK4
3'UTR of CDK4
(miRNA target sites are highlighted)
>CDK4|NM_000075|3'UTR
   1 GCAATGGAGTGGCTGCCATGGAAGGAAGAAAAGCTGCCATTTCCCTTCTGGACACTGAGAGGGCAATCTTTGCCTTTATC
  81 TCTGAGGCTATGGAGGGTCCTCCTCCATCTTTCTACAGAGATTACTTTGCTGCCTTAATGACATTCCCCTCCCACCTCTC
 161 CTTTTGAGGCTTCTCCTTCTCCTTCCCATTTCTCTACACTAAGGGGTATGTTCCCTCTTGTCCCTTTCCCTACCTTTATA
 241 TTTGGGGTCCTTTTTTATACAGGAAAAACAAAACAAAGAAATAATGGTCTTTTTTTTTTTTTTAATGTTTCTTCCTCTGT
 321 TTGGCTTTGCCATTGTGCGATTTGGAAAAACCACTTGGAAGAAGGGACTTTCCTGCAAAACCTTAAAGACTGGTTAAATT
 401 ACAGGGCCTAGGAAGTCAGTGGAGCCCCTTGACTGACAAAGCTTAGAAAGGAACTGAAATTGCTTCTTTGAATATGGATT
 481 TTAGGCGGGGCGTGGTGGCTCACGCCTATAATCCCAGCACGTTGGGAGGCCAACGCGGGTGGATCACCTGAGGTCAGGAG
 561 TTCGAGACCAGCCTGACTAACATGGTGAAACCCTGTCTCTACTAAAAATACAAAATTAGTCAGGCGTGGTGGTGCACACC
 641 TGTAATCCCAGCTACTTGGGAGACTGAGGCAGGAGGATCGCTTGAACCCGGGAGGCAGAGGTTGCGGTGAGCCGAGATCA
 721 TGCCATTGCACTCCAGCCTGGGCAACAGAGCAAGACTCTGTGTCAAAAAAAAAAAAAGAATATAGATTTTTAAATGGCAA
 801 AAAAAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' ugguuuccGUCGGGACCGUUGa 5'
                  |||||: |||||| 
Target 5' ttgcactcCAGCCTGGGCAACa 3'
726 - 747 134.00 -18.50
2
miRNA  3' ugguuuccgucgggACCGUUga 5'
                        ||||||  
Target 5' tatagatttttaaaTGGCAAaa 3'
781 - 802 120.00 -6.40
3
miRNA  3' ugguuUCCG-UCGGGACCGUUGa 5'
               |||| :| | |||:::| 
Target 5' attttAGGCGGGGCGTGGTGGCt 3'
478 - 500 109.00 -16.50
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
188065 5 ClinVar
384740 12 ClinVar
309977 210 ClinVar
309976 246 ClinVar
884129 271 ClinVar
309974 304 ClinVar
309975 304 ClinVar
309973 319 ClinVar
884128 333 ClinVar
309972 370 ClinVar
882420 424 ClinVar
309971 437 ClinVar
309970 479 ClinVar
309969 491 ClinVar
309968 521 ClinVar
309967 689 ClinVar
309966 690 ClinVar
309965 706 ClinVar
882173 734 ClinVar
882172 751 ClinVar
309964 764 ClinVar
309963 778 ClinVar
COSN31597858 16 COSMIC
COSN30504077 21 COSMIC
COSN30514110 30 COSMIC
COSN30481994 43 COSMIC
COSN27000280 56 COSMIC
COSN30140215 59 COSMIC
COSN13410063 63 COSMIC
COSN30514804 74 COSMIC
COSN30698275 100 COSMIC
COSN30155601 166 COSMIC
COSN30511504 171 COSMIC
COSN31542388 278 COSMIC
COSN26637072 330 COSMIC
COSN31565159 380 COSMIC
COSN32010263 489 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs786204045 5 dbSNP
rs1196923268 9 dbSNP
rs770044583 12 dbSNP
rs1191724475 14 dbSNP
rs748223579 16 dbSNP
rs1225004491 17 dbSNP
rs373442519 18 dbSNP
rs1172367214 19 dbSNP
rs754876640 23 dbSNP
rs1315410858 28 dbSNP
rs746950724 31 dbSNP
rs779845928 33 dbSNP
rs1309022049 35 dbSNP
rs1017192884 40 dbSNP
rs2069510 44 dbSNP
rs1460605718 48 dbSNP
rs758102242 50 dbSNP
rs1323224963 57 dbSNP
rs1396066642 66 dbSNP
rs982854686 72 dbSNP
rs1294675919 93 dbSNP
rs951446771 96 dbSNP
rs1221509321 107 dbSNP
rs1029790530 108 dbSNP
rs1395127864 115 dbSNP
rs1489692361 125 dbSNP
rs1293552957 128 dbSNP
rs573865135 133 dbSNP
rs1280507408 134 dbSNP
rs1042890478 137 dbSNP
rs1246031626 150 dbSNP
rs555555387 157 dbSNP
rs899861787 158 dbSNP
rs1271298523 181 dbSNP
rs1352426983 188 dbSNP
rs1323632337 191 dbSNP
rs187207546 193 dbSNP
rs1241728307 197 dbSNP
rs1000870693 203 dbSNP
rs1336872901 209 dbSNP
rs2069511 210 dbSNP
rs563404067 214 dbSNP
rs890445351 221 dbSNP
rs1367654009 224 dbSNP
rs1304056687 231 dbSNP
rs1415298343 236 dbSNP
rs763088789 246 dbSNP
rs1166097174 247 dbSNP
rs775148859 253 dbSNP
rs1429246268 257 dbSNP
rs1300396808 270 dbSNP
rs1051806760 271 dbSNP
rs3180722 274 dbSNP
rs1160378757 276 dbSNP
rs3179899 278 dbSNP
rs929538327 282 dbSNP
rs1471098856 286 dbSNP
rs1291708445 290 dbSNP
rs1381424006 291 dbSNP
rs945105324 292 dbSNP
rs1198394660 294 dbSNP
rs1283666175 299 dbSNP
rs3180723 303 dbSNP
rs1238908150 304 dbSNP
rs1314984297 304 dbSNP
rs372480061 304 dbSNP
rs59185470 304 dbSNP
rs78419156 304 dbSNP
rs886049711 304 dbSNP
rs886049712 304 dbSNP
rs1479356346 305 dbSNP
rs1472931647 306 dbSNP
rs1270587986 307 dbSNP
rs917883102 311 dbSNP
rs1446078911 314 dbSNP
rs1418358557 315 dbSNP
rs1161024667 319 dbSNP
rs775370483 319 dbSNP
rs1206405976 324 dbSNP
rs1434560470 324 dbSNP
rs1332419296 332 dbSNP
rs199606572 333 dbSNP
rs942188819 338 dbSNP
rs1274823483 339 dbSNP
rs1371301661 351 dbSNP
rs1475994409 354 dbSNP
rs1242194964 358 dbSNP
rs1309932398 362 dbSNP
rs1222065344 364 dbSNP
rs59273640 369 dbSNP
rs3473 370 dbSNP
rs990566844 372 dbSNP
rs1442604082 375 dbSNP
rs1056173330 381 dbSNP
rs1203405595 390 dbSNP
rs1230656395 394 dbSNP
rs939004598 397 dbSNP
rs926312287 424 dbSNP
rs1441045730 425 dbSNP
rs980685431 429 dbSNP
rs1381537920 433 dbSNP
rs3472 437 dbSNP
rs3211635 440 dbSNP
rs1048066 446 dbSNP
rs1404835029 466 dbSNP
rs1415205961 468 dbSNP
rs1328488290 473 dbSNP
rs1398159443 474 dbSNP
rs1449170919 475 dbSNP
rs1332147070 477 dbSNP
rs886049710 479 dbSNP
rs746139891 486 dbSNP
rs1034639609 487 dbSNP
rs112275916 491 dbSNP
rs983020823 492 dbSNP
rs966350391 497 dbSNP
rs1175702457 499 dbSNP
rs529424415 503 dbSNP
rs1431080377 504 dbSNP
rs190042114 508 dbSNP
rs1199883561 515 dbSNP
rs1474852876 520 dbSNP
rs113625101 521 dbSNP
rs549179019 522 dbSNP
rs1379709674 524 dbSNP
rs1478581811 528 dbSNP
rs1167548837 533 dbSNP
rs747329158 534 dbSNP
rs964014218 535 dbSNP
rs1447145497 537 dbSNP
rs186719311 546 dbSNP
rs1000416664 563 dbSNP
rs560181586 564 dbSNP
rs1331469318 572 dbSNP
rs778454087 591 dbSNP
rs1276085061 601 dbSNP
rs1319478688 604 dbSNP
rs1218893316 612 dbSNP
rs1010348804 617 dbSNP
rs1271930470 618 dbSNP
rs545299499 625 dbSNP
rs774948009 626 dbSNP
rs1337672390 635 dbSNP
rs1452710930 652 dbSNP
rs1192843590 657 dbSNP
rs1261522786 675 dbSNP
rs1272188263 676 dbSNP
rs890580623 678 dbSNP
rs1051857809 679 dbSNP
rs1340006761 680 dbSNP
rs1456515519 684 dbSNP
rs1334802187 685 dbSNP
rs886049709 689 dbSNP
rs886049708 690 dbSNP
rs904823018 700 dbSNP
rs1037928322 701 dbSNP
rs942299991 702 dbSNP
rs1045132515 705 dbSNP
rs184712 706 dbSNP
rs1409203233 710 dbSNP
rs1246420268 713 dbSNP
rs1056401055 714 dbSNP
rs938859233 719 dbSNP
rs909780892 724 dbSNP
rs184047546 733 dbSNP
rs1047001789 734 dbSNP
rs1194650649 740 dbSNP
rs1257152369 743 dbSNP
rs1475547553 748 dbSNP
rs192347082 751 dbSNP
rs1181253656 756 dbSNP
rs966319292 761 dbSNP
rs866662376 763 dbSNP
rs1156825828 764 dbSNP
rs886049707 764 dbSNP
rs79045565 766 dbSNP
rs573384320 772 dbSNP
rs1204229635 774 dbSNP
rs1362179846 777 dbSNP
rs1311879820 778 dbSNP
rs146863045 778 dbSNP
rs374953569 778 dbSNP
rs886049706 778 dbSNP
rs989396191 778 dbSNP
rs1312754391 780 dbSNP
rs958236270 782 dbSNP
rs1306187762 783 dbSNP
rs2859601 787 dbSNP
rs1240017737 790 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HEK293S
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in GSM1084046. RNA binding protein: AGO2. Condition:CLIP_noarsenite_rep4 HITS-CLIP data was present in GSM1084069. RNA binding protein: AGO2. Condition:CLIP_emetine_SigmaAb ...

- Karginov FV; Hannon GJ, 2013, Genes & development.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' ugguuuccGUCGGGACCGUUGa 5'
                  |||||: |||||| 
Target 5' uugcacucCAGCCUGGGCAACa 3'
7 - 28
Article - Karginov FV; Hannon GJ
- Genes & development, 2013
When adapting to environmental stress, cells attenuate and reprogram their translational output. In part, these altered translation profiles are established through changes in the interactions between RNA-binding proteins and mRNAs. The Argonaute 2 (Ago2)/microRNA (miRNA) machinery has been shown to participate in stress-induced translational up-regulation of a particular mRNA, CAT-1; however, a detailed, transcriptome-wide understanding of the involvement of Ago2 in the process has been lacking. Here, we profiled the overall changes in Ago2-mRNA interactions upon arsenite stress by cross-linking immunoprecipitation (CLIP) followed by high-throughput sequencing (CLIP-seq). Ago2 displayed a significant remodeling of its transcript occupancy, with the majority of 3' untranslated region (UTR) and coding sequence (CDS) sites exhibiting stronger interaction. Interestingly, target sites that were destined for release from Ago2 upon stress were depleted in miRNA complementarity signatures, suggesting an alternative mode of interaction. To compare the changes in Ago2-binding patterns across transcripts with changes in their translational states, we measured mRNA profiles on ribosome/polysome gradients by RNA sequencing (RNA-seq). Increased Ago2 occupancy correlated with stronger repression of translation for those mRNAs, as evidenced by a shift toward lighter gradient fractions upon stress, while release of Ago2 was associated with the limited number of transcripts that remained translated. Taken together, these data point to a role for Ago2 and the mammalian miRNAs in mediating the translational component of the stress response.
LinkOut: [PMID: 23824327]
CLIP-seq Support 1 for dataset GSM1084046
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_noarsenite_rep4
Location of target site ENST00000312990.6 | 3UTR | UGAGCCGAGAUCAUGCCAUUGCACUCCAGCCUGGGC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM1084069
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_emetine_SigmaAb
Location of target site ENST00000312990.6 | 3UTR | AUGCCAUUGCACUCCAGCCUGGGCAACAGAGC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
167 hsa-miR-6501-5p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT156859 FAM126B family with sequence similarity 126 member B 2 2
MIRT173355 TP53INP1 tumor protein p53 inducible nuclear protein 1 2 2
MIRT369102 CHAC1 ChaC glutathione specific gamma-glutamylcyclotransferase 1 2 2
MIRT442037 TRPV2 transient receptor potential cation channel subfamily V member 2 2 2
MIRT442829 AZIN1 antizyme inhibitor 1 2 2
MIRT443729 CCND2 cyclin D2 2 2
MIRT453771 NUCB1 nucleobindin 1 2 10
MIRT453875 IFRD1 interferon related developmental regulator 1 2 12
MIRT454229 OSBPL10 oxysterol binding protein like 10 2 11
MIRT458829 RPUSD2 RNA pseudouridylate synthase domain containing 2 2 2
MIRT459898 PIGO phosphatidylinositol glycan anchor biosynthesis class O 2 10
MIRT464162 VMP1 vacuole membrane protein 1 2 15
MIRT495411 SMAD2 SMAD family member 2 2 2
MIRT496906 TRIM56 tripartite motif containing 56 2 2
MIRT498653 AP3B2 adaptor related protein complex 3 beta 2 subunit 2 6
MIRT498706 PGAM5 PGAM family member 5, mitochondrial serine/threonine protein phosphatase 2 10
MIRT499308 ZNF485 zinc finger protein 485 2 6
MIRT499707 NFATC2IP nuclear factor of activated T-cells 2 interacting protein 2 10
MIRT499755 CIRH1A UTP4, small subunit processome component 2 6
MIRT499827 PCSK9 proprotein convertase subtilisin/kexin type 9 2 8
MIRT503691 MAVS mitochondrial antiviral signaling protein 2 2
MIRT512418 LAYN layilin 2 4
MIRT516232 RAB3B RAB3B, member RAS oncogene family 2 2
MIRT522554 MCAM melanoma cell adhesion molecule 2 4
MIRT523760 FBXO27 F-box protein 27 2 4
MIRT525107 PRKD2 protein kinase D2 2 2
MIRT525919 KIAA0391 KIAA0391 2 2
MIRT527246 COMMD6 COMM domain containing 6 2 2
MIRT527564 ADCY7 adenylate cyclase 7 2 2
MIRT528764 CD1D CD1d molecule 2 2
MIRT529362 YWHAB tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein beta 2 4
MIRT529464 ZNF546 zinc finger protein 546 2 2
MIRT530676 CHRNB1 cholinergic receptor nicotinic beta 1 subunit 2 4
MIRT531635 C19orf52 translocase of inner mitochondrial membrane 29 2 4
MIRT531909 SLC4A1 solute carrier family 4 member 1 (Diego blood group) 2 2
MIRT532172 SEC14L5 SEC14 like lipid binding 5 2 4
MIRT534234 SLC25A16 solute carrier family 25 member 16 2 4
MIRT534561 RRAGD Ras related GTP binding D 2 2
MIRT534971 PSD3 pleckstrin and Sec7 domain containing 3 2 2
MIRT536738 HSPA4L heat shock protein family A (Hsp70) member 4 like 2 2
MIRT538544 CELF1 CUGBP Elav-like family member 1 2 2
MIRT540462 ZNF71 zinc finger protein 71 2 2
MIRT540554 PPIC peptidylprolyl isomerase C 2 2
MIRT543593 KIAA1549 KIAA1549 2 2
MIRT543963 RNF20 ring finger protein 20 2 2
MIRT544047 C9orf64 chromosome 9 open reading frame 64 2 2
MIRT544670 AP1S1 adaptor related protein complex 1 sigma 1 subunit 2 2
MIRT550665 TRAF1 TNF receptor associated factor 1 2 2
MIRT558540 CSNK1G3 casein kinase 1 gamma 3 2 4
MIRT574917 Vmp1 vacuole membrane protein 1 2 9
MIRT575298 Osbpl10 oxysterol binding protein-like 10 2 7
MIRT607960 SNX22 sorting nexin 22 2 2
MIRT610649 TIPRL TOR signaling pathway regulator 2 8
MIRT615899 GATAD1 GATA zinc finger domain containing 1 2 2
MIRT617438 CCS copper chaperone for superoxide dismutase 2 2
MIRT617510 C5orf45 MRN complex interacting protein 2 2
MIRT617548 MTO1 mitochondrial tRNA translation optimization 1 2 2
MIRT620565 WBSCR27 methyltransferase like 27 2 2
MIRT623166 NAA50 N(alpha)-acetyltransferase 50, NatE catalytic subunit 2 2
MIRT624161 DGKE diacylglycerol kinase epsilon 2 2
MIRT626090 MKLN1 muskelin 1 2 2
MIRT627010 FIG4 FIG4 phosphoinositide 5-phosphatase 2 2
MIRT627073 SF3A1 splicing factor 3a subunit 1 2 2
MIRT627136 HS3ST1 heparan sulfate-glucosamine 3-sulfotransferase 1 2 2
MIRT627340 TSHZ2 teashirt zinc finger homeobox 2 2 2
MIRT627436 TAS2R5 taste 2 receptor member 5 2 2
MIRT628273 CYB5D1 cytochrome b5 domain containing 1 2 2
MIRT629091 F2RL1 F2R like trypsin receptor 1 2 4
MIRT629282 UNC13A unc-13 homolog A 2 2
MIRT630122 ARHGEF5 Rho guanine nucleotide exchange factor 5 2 2
MIRT630247 SMTNL2 smoothelin like 2 2 2
MIRT631260 CENPM centromere protein M 2 2
MIRT631336 CD300E CD300e molecule 2 2
MIRT631399 IL2RA interleukin 2 receptor subunit alpha 2 2
MIRT632593 PDP2 pyruvate dehyrogenase phosphatase catalytic subunit 2 2 2
MIRT632991 DUSP18 dual specificity phosphatase 18 2 2
MIRT633079 CXorf21 chromosome X open reading frame 21 2 2
MIRT634223 TMEM132B transmembrane protein 132B 2 2
MIRT635046 MYH11 myosin heavy chain 11 2 2
MIRT636444 LRCH3 leucine rich repeats and calponin homology domain containing 3 2 2
MIRT636649 CDK4 cyclin dependent kinase 4 2 2
MIRT637129 BAMBI BMP and activin membrane bound inhibitor 2 2
MIRT637282 IBA57 IBA57 homolog, iron-sulfur cluster assembly 2 2
MIRT637527 RGS9BP regulator of G protein signaling 9 binding protein 2 2
MIRT637783 OLA1 Obg like ATPase 1 2 2
MIRT637920 LILRA2 leukocyte immunoglobulin like receptor A2 2 2
MIRT638238 SLC1A5 solute carrier family 1 member 5 2 2
MIRT638444 PLXDC2 plexin domain containing 2 2 2
MIRT639765 GPR45 G protein-coupled receptor 45 2 2
MIRT640437 ERVMER34-1 endogenous retrovirus group MER34 member 1, envelope 2 2
MIRT643006 ZNF829 zinc finger protein 829 2 2
MIRT644233 SLC35E3 solute carrier family 35 member E3 2 2
MIRT644661 TMCO1 transmembrane and coiled-coil domains 1 2 2
MIRT644957 ATP6AP1L ATPase H+ transporting accessory protein 1 like 2 2
MIRT645086 SLC35E2B solute carrier family 35 member E2B 2 2
MIRT645256 DFFA DNA fragmentation factor subunit alpha 2 2
MIRT645861 GBP6 guanylate binding protein family member 6 2 2
MIRT645987 ACP6 acid phosphatase 6, lysophosphatidic 2 2
MIRT646502 FAM217B family with sequence similarity 217 member B 2 2
MIRT646811 COX19 COX19, cytochrome c oxidase assembly factor 2 2
MIRT647706 NFX1 nuclear transcription factor, X-box binding 1 2 2
MIRT649657 TEP1 telomerase associated protein 1 2 2
MIRT650550 YIPF4 Yip1 domain family member 4 2 2
MIRT650785 GSR glutathione-disulfide reductase 2 2
MIRT651461 XIAP X-linked inhibitor of apoptosis 2 2
MIRT652098 TRUB2 TruB pseudouridine synthase family member 2 2 2
MIRT654117 RPS6KA5 ribosomal protein S6 kinase A5 2 2
MIRT658901 DPY19L4 dpy-19 like 4 2 2
MIRT659370 CREG2 cellular repressor of E1A stimulated genes 2 2 2
MIRT662537 MTAP methylthioadenosine phosphorylase 2 2
MIRT662617 MCM8 minichromosome maintenance 8 homologous recombination repair factor 2 2
MIRT663491 IYD iodotyrosine deiodinase 2 2
MIRT663899 MRI1 methylthioribose-1-phosphate isomerase 1 2 2
MIRT664552 MKI67IP nucleolar protein interacting with the FHA domain of MKI67 1 1
MIRT664582 HSD17B12 hydroxysteroid 17-beta dehydrogenase 12 2 2
MIRT664953 PTCD3 pentatricopeptide repeat domain 3 2 2
MIRT665193 ESF1 ESF1 nucleolar pre-rRNA processing protein homolog 2 2
MIRT665446 WDR17 WD repeat domain 17 2 2
MIRT665894 TCEANC2 transcription elongation factor A N-terminal and central domain containing 2 2 2
MIRT666480 SBNO1 strawberry notch homolog 1 2 2
MIRT666514 RNF170 ring finger protein 170 2 2
MIRT666692 RBM23 RNA binding motif protein 23 2 2
MIRT666791 PSMD1 proteasome 26S subunit, non-ATPase 1 2 2
MIRT667453 MAPK14 mitogen-activated protein kinase 14 2 2
MIRT667553 LRAT lecithin retinol acyltransferase 2 4
MIRT667744 KDELR1 KDEL endoplasmic reticulum protein retention receptor 1 2 2
MIRT668080 GMEB1 glucocorticoid modulatory element binding protein 1 2 2
MIRT668114 GK5 glycerol kinase 5 (putative) 2 2
MIRT668501 ESYT2 extended synaptotagmin 2 2 2
MIRT668942 CNKSR3 CNKSR family member 3 2 2
MIRT670408 ELP2 elongator acetyltransferase complex subunit 2 2 2
MIRT671134 CD226 CD226 molecule 2 2
MIRT671919 PLEKHS1 pleckstrin homology domain containing S1 2 4
MIRT672287 GP2 glycoprotein 2 2 2
MIRT672427 POLR2D RNA polymerase II subunit D 2 2
MIRT672762 UBE2V2 ubiquitin conjugating enzyme E2 V2 2 2
MIRT672923 LRRC2 leucine rich repeat containing 2 2 2
MIRT673150 C1orf50 chromosome 1 open reading frame 50 2 2
MIRT673309 UBE2G2 ubiquitin conjugating enzyme E2 G2 2 2
MIRT673560 PLA2G16 phospholipase A2 group XVI 2 2
MIRT673895 DCTN6 dynactin subunit 6 2 2
MIRT674513 PRR23A proline rich 23A 2 2
MIRT674614 RBBP4 RB binding protein 4, chromatin remodeling factor 2 2
MIRT674747 SLC16A1 solute carrier family 16 member 1 2 2
MIRT675693 PIWIL1 piwi like RNA-mediated gene silencing 1 2 2
MIRT675890 SNAP29 synaptosome associated protein 29 2 2
MIRT685271 KIAA1143 KIAA1143 2 2
MIRT686057 KCNA7 potassium voltage-gated channel subfamily A member 7 2 2
MIRT693886 C3orf62 chromosome 3 open reading frame 62 2 2
MIRT695594 TMEM199 transmembrane protein 199 2 2
MIRT696592 ORMDL2 ORMDL sphingolipid biosynthesis regulator 2 2 2
MIRT698041 TRPM7 transient receptor potential cation channel subfamily M member 7 2 2
MIRT699907 RUNDC1 RUN domain containing 1 2 2
MIRT706608 CYB5B cytochrome b5 type B 2 2
MIRT706628 PNPT1 polyribonucleotide nucleotidyltransferase 1 2 2
MIRT706640 NCBP2 nuclear cap binding protein subunit 2 2 2
MIRT706676 COL13A1 collagen type XIII alpha 1 chain 2 2
MIRT706723 RFK riboflavin kinase 2 2
MIRT706857 MAFF MAF bZIP transcription factor F 2 2
MIRT706891 ST3GAL1 ST3 beta-galactoside alpha-2,3-sialyltransferase 1 2 2
MIRT706958 FANCC Fanconi anemia complementation group C 2 2
MIRT706976 XPO5 exportin 5 2 2
MIRT707010 RRP36 ribosomal RNA processing 36 2 2
MIRT707028 ACTR5 ARP5 actin related protein 5 homolog 2 2
MIRT707068 MED29 mediator complex subunit 29 2 2
MIRT713253 ZFP30 ZFP30 zinc finger protein 2 2
MIRT719130 NR2F6 nuclear receptor subfamily 2 group F member 6 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-6501 Ceritinib 57379345 NSC776422 approved sensitive High Non-Small Cell Lung Cancer cell line (H3122, H2228)
hsa-mir-6501 Ceritinib 57379345 NSC776422 approved sensitive cell line (H3122)
hsa-miR-6501-5p Ceritinib 57379345 NSC776422 approved sensitive High Non-Small Cell Lung Cancer cell line (H3122, H2228)
hsa-miR-6501-5p Gefitinib 123631 NSC715055 approved resistant cell line (PC9)
hsa-miR-6501-5p Gefitinib 123631 NSC715055 approved sensitive cell line (HCC827)
hsa-miR-6501-5p Osimertinib 71496458 NSC779217 approved sensitive cell line (HCC827)
hsa-miR-6501-5p Osimertinib 71496458 NSC779217 approved resistant cell line (PC9)
hsa-miR-6501-5p Vemurafenib 42611257 NSC761431 approved sensitive cell line (451Lu)
hsa-miR-6501-5p Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-6501-5p Gefitinib 123631 NSC715055 approved resistant cell line (HCC827)
hsa-miR-6501-5p Cisplatin 5460033 NSC119875 approved sensitive cell line (A2780)
hsa-miR-6501-5p Ceritinib 57379345 NSC776422 approved sensitive cell line (H3122)

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