pre-miRNA Information
pre-miRNA hsa-mir-4680   
Genomic Coordinates chr10: 110898090 - 110898155
Description Homo sapiens miR-4680 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-4680-5p
Sequence 5| AGAACUCUUGCAGUCUUAGAUGU |27
Evidence Experimental
Experiments Illumina
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1274530692 2 dbSNP
rs780271274 5 dbSNP
rs1461423681 7 dbSNP
rs749729920 8 dbSNP
rs1252920446 10 dbSNP
rs201739274 11 dbSNP
rs774971106 19 dbSNP
rs748132091 22 dbSNP
rs773643180 22 dbSNP
rs1235425484 23 dbSNP
Putative Targets

Gene Information
Gene Symbol CYB5D1   
Synonyms -
Description cytochrome b5 domain containing 1
Transcript NM_144607   
Expression
Putative miRNA Targets on CYB5D1
3'UTR of CYB5D1
(miRNA target sites are highlighted)
>CYB5D1|NM_144607|3'UTR
   1 GCAAGGAGATGTACACTCGTGTAGACTCAAGACGTATTTCGAGTTTGGCTTTTTCTGTGCCTTGAGGAAAAGTGGTGGGG
  81 CCGAGGGGTGCCTGGACCCAGATCTCCACTCCTCTCCAGGAGCTAGCCTGTGCCCTTCTGAAGTGTAAAGGCCCTATTCC
 161 CTGCCTTCATTACAGTTTGCTCTGAGAAAATTAGTGAATTAATCTTTGGGAATGATACAAGAAGATCAAGTACCTTGGTT
 241 TAGGGAGATGTAGAAGAGGATAGTCAGAGTTCAGGCAGAACTGTTTGATAGTTAAGAGAGAGTAGTTCTACAGGGGTGAG
 321 GGATGGAAGGACTTTTTTGGCAATGATGGAAATGAGATGTCTGCAGGAAGATGGGATTTACAAAGAAATAGGAAATGTTT
 401 ATCATTGACCATACAAAGCTGGCTTATCTTACTTGTAGAAGAGTGTTTGGCAGCTGAAACCCAAGGGAAAGAAAGGAAGT
 481 GCGTCATTATAGGCAATTCAGGCTAGATATTATACTAGGTACTTCATATACCCTCTTTTTTTTTTTTGCCCCCAACAAAG
 561 AGAAGGGGTCTTGCTCTGTCACCCAGTCTGGAGTGCAGTGGCAAAATCATGGCTCACTGCAGCCTGGAGCTCCTGGGCAC
 641 AAGTGATCCTCCCATCTCTGCCTTGAGTAGCTGGGACTTCAGGTGCACGCCACAATGCCTAATTTTTTAATTTTTTGTAG
 721 ACACAGGGTCTCGCTGTGTTGCCCAGGCTGGTTTCAACCTCCTGGCCTCAAGTGATCCTCTTGCCTCAGCCTCCCAAATA
 801 GCCTCTTCAAGACAACTACCCCATAAGGTGGATTACCATTACTATGTTACAGATAAGTCCTTCGAAACTTTGGAAAGTTT
 881 AATAGCTCAAAGCCACACTAGGTAGTAACCACTAGAGCCAGAATGCAAATTCAAGTCTGCCCAACTCCAAAGTCCATGTT
 961 CTCTCAATATAAAGGGACCATCTCAATGTCTAATCTCATGTTAACATTTGTAGCCACTGCTCTCAGCAAGTATTTGGGAT
1041 GTGGCTTTGTCCTAGGATCCCTGCACAATAGGAAATTGTGGTCCTATTGTATAGTTTGCAGTTATTGTCTCTGGAAGGGA
1121 GTTTGCAGAGTTCTCCTGTGGCGAAGAGGAGGCAAGGAAGGCTAAGTGTCAGTTAAGCAATAGCTATTGGGGCTACTTCT
1201 TTGTTAATCCCATACCCCAGATTTCTCTCCTGACCTTTTGGGGCAAAGAGGTGGGTATTTACTAACTTGAAGGAAAACTA
1281 GAGTGGGGAAAAGGCCGGCAAATTAGTGACACTTTGGCGAGGGAGAAAAAGGAGGCAGTTTGCCACTTGGAGAAGATGAG
1361 GAAGACAGGGTTGCAAGACGGTGACTCCAAAAGAGGGAGCTCGACAGGGGTAATGTAAACAGAGATGCTAACTAAGTCAG
1441 AAAACTCTCCTGGTGACCAAAAGAGAACCACTATTGGGGGTAATGGCTAGATTTGGTCTCCTTTAACTTAAGGAGGGGAG
1521 ATTTGAGAATGACAGACAGTTGAACTTCCTGGCAGCAGCAAGCAAAAAACAAATCAGGAAGAGTTTAGTGTGTCTTCTGG
1601 CAGGGGACACCAGGGCCCAGCACAGGAGAAGGTGGCCCCTGTGAGATACTGGTGGGCTATATAGGCATTTTCTGAGGGGC
1681 TTTGGGAGGCATGAACAAAGGTGGAAACATTGCTGTTGGCTTCGGCAGTATCTGAATTTACTGTGAGATGGAGGGTTTAA
1761 ATCTAACCCCATGGAATGCAGGAGTCCATGAATTATCTAAATCGATCATTTTGATCTTTAATCAACTCTGCAATTATGTG
1841 TACCTTGTTTGCTCAATTAAACCCTGAACTATTTGAGAATGAAAGCTATGCTGTTCCTCTAGTGCAAGCCTCAGGGCCTG
1921 TCCTGTGCCTACAGGATGTCCCCATTCTGCCAAAACCTGTCCCTCTTCCAGAGACTCCTACTTCAATGTCTCTTGCTAGA
2001 AACACATCCCTTTCCTCACACATCCAGTCACTCATCAAGTGTAATCTGTCTCCTAAATATCTCTGGAACCTATCTTCTTT
2081 TCTCCAAGTTACCATCACCTCTTGTCTAAACTGCTACGGAAACTTCCTAACCTGTTCTCCCATTTCCACTTCTGACTTCC
2161 ATGCTGCAATGAGAGTCAGCTATGAAAAACAAACCTAAACATCGAACTTTCCTTAGCTTCTTCAGTGGCTTCCAACTGCT
2241 TTTGGAATAAAGTCCTAAATTCAAAGATCTTGTATAAATCAGGCTCATCTCGCAACACCCCTCTTTGTTCTCTATGGCCT
2321 AGACACACTGGCTTTCAGTTCATTACATGTCTTGCCTCAGACCCTCACACACTGTCCTCTCTGCCTGCAACACTCTTCCT
2401 TTCACTTTCCACCTAGCTGATCCTAAATGTTCCTTCCTCAGGGAGGTCTTTTCTGATTTCTTGGTGGGTCAAGACTTTCT
2481 GATAAATCAGTTAGCACCATGCATTTTCCAGAGTTTTTATTACAATTGTAAAATTATGGCTGTAATAGGCTGGCTGCGCT
2561 GCTAGATTGTAAGCTCACGAGGGCAGAGATCTTGTTCACATCTTGCTCACTGCTATATTCTCATTGCTGAGCACACAGTT
2641 GCAGCTCAATAAATTTTGAATGAACTCCAAAAAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' uguagaUUCUGACGUUCUCAAGa 5'
                |:||: |: ||||||| 
Target 5' tagaagAGGATAGTCAGAGTTCa 3'
251 - 273 157.00 -11.80
2
miRNA  3' uguagaUUCUGACGUUCUCAAGa 5'
                :|| :||| ||||||| 
Target 5' ggaaggGAGTTTGC-AGAGTTCt 3'
1113 - 1134 156.00 -15.50
3
miRNA  3' uguagaUUCUGACGUUCUCAAGa 5'
                ||  | | |||||||: 
Target 5' aaaaacAAATCAGGAAGAGTTTa 3'
1565 - 1587 137.00 -7.40
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN30455500 19 COSMIC
COSN26972562 20 COSMIC
COSN30521205 35 COSMIC
COSN30516124 40 COSMIC
COSN30487767 86 COSMIC
COSN1202125 116 COSMIC
COSN31599058 153 COSMIC
COSN20113485 548 COSMIC
COSN15300169 672 COSMIC
COSN2493662 1135 COSMIC
COSN22245525 2196 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs773081847 1 dbSNP
rs1413810956 5 dbSNP
rs762618282 9 dbSNP
rs752190170 12 dbSNP
rs1231913144 17 dbSNP
rs751437652 19 dbSNP
rs1348392605 20 dbSNP
rs778606811 27 dbSNP
rs551386324 29 dbSNP
rs745548841 29 dbSNP
rs760902103 33 dbSNP
rs1391652632 34 dbSNP
rs764272834 34 dbSNP
rs753910540 35 dbSNP
rs769061560 36 dbSNP
rs757572263 38 dbSNP
rs371586358 41 dbSNP
rs376697360 42 dbSNP
rs747512422 44 dbSNP
rs1455012146 50 dbSNP
rs1164248868 54 dbSNP
rs1466397580 58 dbSNP
rs533902225 62 dbSNP
rs919525654 76 dbSNP
rs879015952 81 dbSNP
rs1004682620 83 dbSNP
rs1035524748 84 dbSNP
rs1451778570 88 dbSNP
rs952437755 95 dbSNP
rs1419973936 96 dbSNP
rs1250247686 101 dbSNP
rs985041784 103 dbSNP
rs1342245566 114 dbSNP
rs960857018 117 dbSNP
rs1012743710 136 dbSNP
rs2131809 139 dbSNP
rs1224928931 143 dbSNP
rs1023661071 145 dbSNP
rs555901982 148 dbSNP
rs1339647205 168 dbSNP
rs1353605459 176 dbSNP
rs979692808 180 dbSNP
rs146325540 182 dbSNP
rs1315981843 184 dbSNP
rs1260633727 187 dbSNP
rs1460508732 194 dbSNP
rs1203531731 220 dbSNP
rs1225145077 221 dbSNP
rs1257448351 226 dbSNP
rs1444670513 233 dbSNP
rs1346013667 244 dbSNP
rs1302443857 245 dbSNP
rs1191480057 246 dbSNP
rs1040498183 248 dbSNP
rs1478237120 251 dbSNP
rs773062995 253 dbSNP
rs538326001 254 dbSNP
rs778171286 259 dbSNP
rs1427232122 262 dbSNP
rs1157348796 274 dbSNP
rs556822568 286 dbSNP
rs934654547 288 dbSNP
rs1199320588 294 dbSNP
rs1205206306 295 dbSNP
rs545250303 295 dbSNP
rs187006286 298 dbSNP
rs944509613 308 dbSNP
rs190154749 309 dbSNP
rs1317307373 323 dbSNP
rs1323955432 334 dbSNP
rs139520724 349 dbSNP
rs1230964595 352 dbSNP
rs1328147093 356 dbSNP
rs930289939 359 dbSNP
rs1297729650 371 dbSNP
rs1048970690 373 dbSNP
rs886326082 390 dbSNP
rs1388124021 393 dbSNP
rs149552503 394 dbSNP
rs1056339090 404 dbSNP
rs1280999204 404 dbSNP
rs1035404556 406 dbSNP
rs1233295901 409 dbSNP
rs896292037 411 dbSNP
rs780156161 413 dbSNP
rs1257315286 416 dbSNP
rs530577159 419 dbSNP
rs1477287728 428 dbSNP
rs1203910846 431 dbSNP
rs993929217 443 dbSNP
rs1193207275 449 dbSNP
rs1427382971 451 dbSNP
rs548267025 465 dbSNP
rs1023695869 466 dbSNP
rs747191319 467 dbSNP
rs1488835678 477 dbSNP
rs539812572 483 dbSNP
rs74578237 484 dbSNP
rs528990443 485 dbSNP
rs1226666845 491 dbSNP
rs374139708 493 dbSNP
rs1364541885 495 dbSNP
rs1295566590 502 dbSNP
rs1267000992 503 dbSNP
rs1454728379 504 dbSNP
rs1000828452 509 dbSNP
rs1031266757 511 dbSNP
rs1480271153 516 dbSNP
rs1176867279 521 dbSNP
rs543884352 523 dbSNP
rs562752765 532 dbSNP
rs1333871587 536 dbSNP
rs1429748574 536 dbSNP
rs1453029706 536 dbSNP
rs57736014 536 dbSNP
rs796585222 536 dbSNP
rs80139737 537 dbSNP
rs1184919674 548 dbSNP
rs199816379 548 dbSNP
rs551663824 549 dbSNP
rs1360874284 550 dbSNP
rs1421261634 551 dbSNP
rs1301102605 552 dbSNP
rs1344465631 553 dbSNP
rs1439319158 557 dbSNP
rs566602604 564 dbSNP
rs1195140586 567 dbSNP
rs1339987738 569 dbSNP
rs1272484882 584 dbSNP
rs1248301440 597 dbSNP
rs988895355 598 dbSNP
rs1333480229 610 dbSNP
rs964545215 613 dbSNP
rs974539732 618 dbSNP
rs947381654 634 dbSNP
rs1044724476 635 dbSNP
rs1409693625 639 dbSNP
rs1369253415 645 dbSNP
rs181872284 649 dbSNP
rs1424771609 684 dbSNP
rs1412508131 687 dbSNP
rs527709190 689 dbSNP
rs112820404 690 dbSNP
rs1181193187 696 dbSNP
rs1355097631 698 dbSNP
rs984458506 701 dbSNP
rs185806388 702 dbSNP
rs55869181 709 dbSNP
rs567641697 709 dbSNP
rs1290115189 721 dbSNP
rs538387683 725 dbSNP
rs1490524504 731 dbSNP
rs994351191 733 dbSNP
rs940642725 734 dbSNP
rs888127986 737 dbSNP
rs1056773020 756 dbSNP
rs1280440564 772 dbSNP
rs1228202254 778 dbSNP
rs1349120692 785 dbSNP
rs1192002629 790 dbSNP
rs1305468006 796 dbSNP
rs1006517065 804 dbSNP
rs1017876412 817 dbSNP
rs964990960 819 dbSNP
rs976331324 820 dbSNP
rs896333882 839 dbSNP
rs1380804538 844 dbSNP
rs1421506054 845 dbSNP
rs947855193 858 dbSNP
rs1471472760 860 dbSNP
rs368357974 864 dbSNP
rs1030530782 865 dbSNP
rs1477689135 866 dbSNP
rs956221523 871 dbSNP
rs989316309 884 dbSNP
rs1448921495 896 dbSNP
rs1294956351 899 dbSNP
rs1393945187 902 dbSNP
rs1285251475 903 dbSNP
rs1208401064 904 dbSNP
rs1327486962 905 dbSNP
rs1390283138 910 dbSNP
rs914640062 913 dbSNP
rs144187554 918 dbSNP
rs1272531179 942 dbSNP
rs571821489 958 dbSNP
rs538807442 964 dbSNP
rs1345316682 976 dbSNP
rs1000940754 977 dbSNP
rs1319430133 979 dbSNP
rs1455374093 980 dbSNP
rs1408009133 981 dbSNP
rs1378279127 982 dbSNP
rs1413775080 1003 dbSNP
rs927289881 1006 dbSNP
rs1031045334 1013 dbSNP
rs892441663 1018 dbSNP
rs1248768606 1021 dbSNP
rs1188163710 1024 dbSNP
rs1463759960 1033 dbSNP
rs897005685 1043 dbSNP
rs1211300144 1048 dbSNP
rs554466865 1073 dbSNP
rs1321531460 1078 dbSNP
rs748212630 1086 dbSNP
rs1048619318 1087 dbSNP
rs1362030470 1094 dbSNP
rs572614412 1097 dbSNP
rs1222525160 1100 dbSNP
rs1296302905 1109 dbSNP
rs1432365201 1113 dbSNP
rs1384553324 1114 dbSNP
rs888167318 1116 dbSNP
rs1267430603 1124 dbSNP
rs1479802533 1128 dbSNP
rs1410529688 1131 dbSNP
rs769889984 1134 dbSNP
rs964248960 1137 dbSNP
rs1168053861 1143 dbSNP
rs1007040813 1144 dbSNP
rs975520767 1151 dbSNP
rs1017990778 1152 dbSNP
rs1027104591 1159 dbSNP
rs997799526 1162 dbSNP
rs1030561674 1164 dbSNP
rs1198078818 1172 dbSNP
rs1207225588 1179 dbSNP
rs1343512211 1180 dbSNP
rs1273201872 1184 dbSNP
rs1225592122 1188 dbSNP
rs1238927860 1197 dbSNP
rs1361097308 1198 dbSNP
rs1441402377 1212 dbSNP
rs148689920 1216 dbSNP
rs1395133942 1218 dbSNP
rs956424178 1228 dbSNP
rs3840058 1231 dbSNP
rs1022136903 1233 dbSNP
rs1369904711 1235 dbSNP
rs1307442173 1237 dbSNP
rs984487908 1239 dbSNP
rs1165745473 1240 dbSNP
rs1370982659 1253 dbSNP
rs1423517326 1267 dbSNP
rs1412000048 1279 dbSNP
rs1179321063 1284 dbSNP
rs554974594 1287 dbSNP
rs376895442 1289 dbSNP
rs561391932 1289 dbSNP
rs960001652 1292 dbSNP
rs762677551 1293 dbSNP
rs940322933 1297 dbSNP
rs770700127 1298 dbSNP
rs1265590290 1302 dbSNP
rs573301060 1306 dbSNP
rs543946147 1309 dbSNP
rs73977771 1319 dbSNP
rs947919804 1322 dbSNP
rs533155757 1336 dbSNP
rs1044953551 1337 dbSNP
rs925103092 1338 dbSNP
rs147820314 1341 dbSNP
rs1379145918 1357 dbSNP
rs1349696409 1372 dbSNP
rs1229213138 1374 dbSNP
rs1315350208 1380 dbSNP
rs936760259 1381 dbSNP
rs1294207711 1396 dbSNP
rs190178352 1403 dbSNP
rs1161673546 1406 dbSNP
rs182347731 1406 dbSNP
rs1258716920 1407 dbSNP
rs892479326 1408 dbSNP
rs112327778 1411 dbSNP
rs1180648604 1420 dbSNP
rs900852981 1423 dbSNP
rs1041309965 1426 dbSNP
rs900119228 1427 dbSNP
rs997829327 1428 dbSNP
rs1487271504 1435 dbSNP
rs1201636288 1439 dbSNP
rs527610167 1443 dbSNP
rs1209005044 1445 dbSNP
rs1027133881 1464 dbSNP
rs528140995 1474 dbSNP
rs139633609 1475 dbSNP
rs1225205484 1476 dbSNP
rs59836308 1482 dbSNP
rs1331614203 1485 dbSNP
rs1005940779 1491 dbSNP
rs1010898682 1493 dbSNP
rs1386307521 1514 dbSNP
rs1365645565 1517 dbSNP
rs1015065685 1518 dbSNP
rs796581556 1519 dbSNP
rs961738464 1527 dbSNP
rs1388351362 1531 dbSNP
rs1157424311 1535 dbSNP
rs1417146509 1540 dbSNP
rs1477255328 1551 dbSNP
rs561305538 1571 dbSNP
rs1378753568 1578 dbSNP
rs1425092565 1579 dbSNP
rs116421338 1581 dbSNP
rs1001585524 1589 dbSNP
rs1188788253 1592 dbSNP
rs917581216 1593 dbSNP
rs752245139 1595 dbSNP
rs1449473434 1596 dbSNP
rs760138792 1614 dbSNP
rs376235961 1616 dbSNP
rs936459607 1618 dbSNP
rs918572083 1620 dbSNP
rs1231030980 1625 dbSNP
rs1052525510 1626 dbSNP
rs185199932 1632 dbSNP
rs1299992417 1635 dbSNP
rs1436020818 1638 dbSNP
rs984424534 1646 dbSNP
rs1399588548 1660 dbSNP
rs1279100873 1661 dbSNP
rs371397589 1663 dbSNP
rs1221761281 1667 dbSNP
rs8080692 1668 dbSNP
rs1312643997 1678 dbSNP
rs1039493629 1697 dbSNP
rs374524731 1699 dbSNP
rs899816621 1701 dbSNP
rs933653055 1705 dbSNP
rs997086016 1715 dbSNP
rs564316769 1717 dbSNP
rs892124073 1724 dbSNP
rs368717326 1725 dbSNP
rs888635371 1726 dbSNP
rs191037211 1732 dbSNP
rs758697132 1739 dbSNP
rs565915413 1752 dbSNP
rs549151230 1755 dbSNP
rs1341409170 1767 dbSNP
rs1276784370 1769 dbSNP
rs962134407 1773 dbSNP
rs1341665158 1786 dbSNP
rs1295636180 1791 dbSNP
rs1479288834 1792 dbSNP
rs1013332216 1793 dbSNP
rs1247340276 1794 dbSNP
rs1025085276 1797 dbSNP
rs372344502 1798 dbSNP
rs564950677 1798 dbSNP
rs763860159 1798 dbSNP
rs774180971 1800 dbSNP
rs562689072 1802 dbSNP
rs1034404283 1804 dbSNP
rs1178909272 1805 dbSNP
rs969029674 1807 dbSNP
rs1014287376 1808 dbSNP
rs1343751109 1810 dbSNP
rs1387827469 1820 dbSNP
rs1164633472 1834 dbSNP
rs1472955516 1838 dbSNP
rs1367620804 1839 dbSNP
rs1025666432 1840 dbSNP
rs1439452870 1848 dbSNP
rs1252485349 1852 dbSNP
rs980696139 1853 dbSNP
rs1482765922 1860 dbSNP
rs1272639075 1863 dbSNP
rs951444109 1870 dbSNP
rs761670695 1872 dbSNP
rs1032235644 1878 dbSNP
rs1357325233 1884 dbSNP
rs957866309 1886 dbSNP
rs988414763 1894 dbSNP
rs984070346 1898 dbSNP
rs1017243566 1903 dbSNP
rs963877367 1910 dbSNP
rs536597874 1915 dbSNP
rs554835999 1916 dbSNP
rs1274263496 1923 dbSNP
rs1324971218 1926 dbSNP
rs1405524264 1928 dbSNP
rs1389611687 1929 dbSNP
rs1368441915 1940 dbSNP
rs1473439346 1957 dbSNP
rs1412518636 1970 dbSNP
rs751860151 1972 dbSNP
rs1471574403 1976 dbSNP
rs573313512 1979 dbSNP
rs1231176231 1980 dbSNP
rs933769104 1987 dbSNP
rs1452352189 2002 dbSNP
rs1282041215 2004 dbSNP
rs1352951684 2006 dbSNP
rs1331659511 2018 dbSNP
rs537401954 2020 dbSNP
rs1462946300 2022 dbSNP
rs76080656 2025 dbSNP
rs1287964293 2029 dbSNP
rs1349185567 2032 dbSNP
rs1276071172 2035 dbSNP
rs1436603473 2036 dbSNP
rs1330056786 2042 dbSNP
rs1321167407 2043 dbSNP
rs944143182 2051 dbSNP
rs913580239 2053 dbSNP
rs1158150952 2055 dbSNP
rs1191009142 2062 dbSNP
rs1455539590 2066 dbSNP
rs976852268 2071 dbSNP
rs1191746570 2073 dbSNP
rs921279818 2087 dbSNP
rs1197725497 2094 dbSNP
rs577632170 2095 dbSNP
rs937585325 2102 dbSNP
rs1055926269 2103 dbSNP
rs895968258 2107 dbSNP
rs1014368269 2117 dbSNP
rs1026122319 2118 dbSNP
rs1175021224 2119 dbSNP
rs887135980 2135 dbSNP
rs755296263 2141 dbSNP
rs1343654084 2144 dbSNP
rs1272583709 2152 dbSNP
rs932632585 2160 dbSNP
rs145133723 2174 dbSNP
rs1319587934 2177 dbSNP
rs888663302 2181 dbSNP
rs1432605990 2184 dbSNP
rs1378970753 2188 dbSNP
rs940267092 2195 dbSNP
rs749967212 2197 dbSNP
rs79533239 2202 dbSNP
rs572259977 2204 dbSNP
rs1029526974 2205 dbSNP
rs1171854237 2207 dbSNP
rs542951884 2211 dbSNP
rs147577981 2214 dbSNP
rs1024697179 2218 dbSNP
rs567648960 2233 dbSNP
rs1188224237 2237 dbSNP
rs531757414 2269 dbSNP
rs755572976 2271 dbSNP
rs1323170676 2274 dbSNP
rs1350741470 2287 dbSNP
rs552096803 2292 dbSNP
rs748265762 2293 dbSNP
rs1277515647 2301 dbSNP
rs979541840 2301 dbSNP
rs1376039614 2309 dbSNP
rs1225807473 2314 dbSNP
rs765857511 2316 dbSNP
rs753478621 2318 dbSNP
rs754657945 2319 dbSNP
rs1303226579 2323 dbSNP
rs538175628 2323 dbSNP
rs1311092222 2325 dbSNP
rs375912932 2342 dbSNP
rs1357391404 2345 dbSNP
rs1311096784 2346 dbSNP
rs926287544 2349 dbSNP
rs1390911629 2361 dbSNP
rs769943168 2369 dbSNP
rs957980708 2372 dbSNP
rs1290116986 2380 dbSNP
rs778060423 2395 dbSNP
rs1416321277 2406 dbSNP
rs1453011097 2407 dbSNP
rs549870669 2409 dbSNP
rs1472727200 2411 dbSNP
rs570230524 2424 dbSNP
rs1255997726 2426 dbSNP
rs1055957185 2433 dbSNP
rs777864242 2439 dbSNP
rs988057693 2442 dbSNP
rs1021237991 2456 dbSNP
rs965214890 2467 dbSNP
rs565265100 2475 dbSNP
rs921310830 2482 dbSNP
rs1227558469 2483 dbSNP
rs1376769645 2493 dbSNP
rs950241378 2496 dbSNP
rs1047147972 2501 dbSNP
rs887158809 2503 dbSNP
rs1307502351 2511 dbSNP
rs183667011 2512 dbSNP
rs1472003360 2513 dbSNP
rs747328570 2526 dbSNP
rs1005627589 2529 dbSNP
rs1016986064 2538 dbSNP
rs1423566356 2550 dbSNP
rs899817507 2554 dbSNP
rs996795727 2558 dbSNP
rs537484308 2559 dbSNP
rs984118324 2562 dbSNP
rs1009780574 2568 dbSNP
rs1265644608 2569 dbSNP
rs1220428782 2576 dbSNP
rs1332413550 2577 dbSNP
rs547868224 2579 dbSNP
rs968239943 2589 dbSNP
rs10112 2595 dbSNP
rs1329326860 2616 dbSNP
rs1389718833 2625 dbSNP
rs774260070 2640 dbSNP
rs759222194 2657 dbSNP
rs1457645583 2658 dbSNP
rs926318785 2671 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HEK293S
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in GSM1084068. RNA binding protein: AGO2. Condition:CLIP_noemetine_SigmaAb ...

- Karginov FV; Hannon GJ, 2013, Genes & development.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' ugUAGAUUCUGACGUUCUCAaga 5'
            | ||:||::  ||:||||   
Target 5' ucACCUGAGGU--CAGGAGU--- 3'
7 - 24
Article - Karginov FV; Hannon GJ
- Genes & development, 2013
When adapting to environmental stress, cells attenuate and reprogram their translational output. In part, these altered translation profiles are established through changes in the interactions between RNA-binding proteins and mRNAs. The Argonaute 2 (Ago2)/microRNA (miRNA) machinery has been shown to participate in stress-induced translational up-regulation of a particular mRNA, CAT-1; however, a detailed, transcriptome-wide understanding of the involvement of Ago2 in the process has been lacking. Here, we profiled the overall changes in Ago2-mRNA interactions upon arsenite stress by cross-linking immunoprecipitation (CLIP) followed by high-throughput sequencing (CLIP-seq). Ago2 displayed a significant remodeling of its transcript occupancy, with the majority of 3' untranslated region (UTR) and coding sequence (CDS) sites exhibiting stronger interaction. Interestingly, target sites that were destined for release from Ago2 upon stress were depleted in miRNA complementarity signatures, suggesting an alternative mode of interaction. To compare the changes in Ago2-binding patterns across transcripts with changes in their translational states, we measured mRNA profiles on ribosome/polysome gradients by RNA sequencing (RNA-seq). Increased Ago2 occupancy correlated with stronger repression of translation for those mRNAs, as evidenced by a shift toward lighter gradient fractions upon stress, while release of Ago2 was associated with the limited number of transcripts that remained translated. Taken together, these data point to a role for Ago2 and the mammalian miRNAs in mediating the translational component of the stress response.
LinkOut: [PMID: 23824327]
CLIP-seq Support 1 for dataset GSM4903829
Method / RBP HITS-CLIP / AGO
Cell line / Condition Human neurons / CTLTD_shCTL_a
Location of target site NM_144607 | 3UTR | GCAGAGUUCUCCUGU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161238
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM4903833
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_a
Location of target site NM_144607 | 3UTR | UUCUCCUGUGGCGAAGAGGAGGCAAGGAAGGCUAA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 3 for dataset GSM4903834
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_b
Location of target site NM_144607 | 3UTR | AGUUAUUGUCUCUGGAAGGGAGUUUGCAGAGUUCUCCUGUGGCGAAGAGGAGGCAAGGAAGGCUAA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 4 for dataset GSM4903835
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_c
Location of target site NM_144607 | 3UTR | UUCUCCUGUGGCGAAGAGGAGGCAAGGAAGGCUAA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 5 for dataset GSM4903836
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / 124_TD_21_a
Location of target site NM_144607 | 3UTR | CUCUGGAAGGGAGUUUGCAGAGUUCUCCUGUGGCGAAGAGGAGGCAAGGAAGGCUAA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 6 for dataset GSM4903838
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / 124_TD_21_c
Location of target site NM_144607 | 3UTR | GUAUAGUUUGCAGUUAUUGUCUCUGGAAGGGAGUUUGCAGAGUUCUCCUGUGGCGAAGAGGAGGCAAGGAAGGCUAA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 7 for dataset GSM1084068
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_noemetine_SigmaAb
Location of target site ENST00000571846.1 | 3UTR | UGGGGAUCACCUGAGGUCAGGAGU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
133 hsa-miR-4680-5p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT378771 MACC1 MACC1, MET transcriptional regulator 2 2
MIRT393867 ZDHHC21 zinc finger DHHC-type containing 21 2 4
MIRT446684 C2CD2 C2 calcium dependent domain containing 2 2 2
MIRT447600 MRPL3 mitochondrial ribosomal protein L3 2 2
MIRT450708 RNF152 ring finger protein 152 2 2
MIRT450784 PAPOLG poly(A) polymerase gamma 2 2
MIRT454623 COL23A1 collagen type XXIII alpha 1 chain 2 8
MIRT461620 PTCD3 pentatricopeptide repeat domain 3 2 2
MIRT462695 SNRPD3 small nuclear ribonucleoprotein D3 polypeptide 2 2
MIRT475530 HOXA3 homeobox A3 2 8
MIRT475739 HERPUD1 homocysteine inducible ER protein with ubiquitin like domain 1 2 4
MIRT489676 CYP1A1 cytochrome P450 family 1 subfamily A member 1 2 2
MIRT490610 SLC47A1 solute carrier family 47 member 1 2 2
MIRT493628 HIC2 HIC ZBTB transcriptional repressor 2 2 2
MIRT496152 RPS15A ribosomal protein S15a 2 2
MIRT499232 VAV3 vav guanine nucleotide exchange factor 3 2 4
MIRT501496 PRICKLE2 prickle planar cell polarity protein 2 2 2
MIRT507163 GAS2L3 growth arrest specific 2 like 3 2 2
MIRT512389 MTRNR2L1 MT-RNR2-like 1 2 4
MIRT514626 MTRNR2L7 MT-RNR2-like 7 2 2
MIRT517474 PEX26 peroxisomal biogenesis factor 26 2 2
MIRT525332 CNGB1 cyclic nucleotide gated channel beta 1 2 2
MIRT526685 BAK1 BCL2 antagonist/killer 1 2 2
MIRT527317 CCR2 C-C motif chemokine receptor 2 2 2
MIRT527608 EYS eyes shut homolog (Drosophila) 2 2
MIRT528794 RAB32 RAB32, member RAS oncogene family 2 2
MIRT531048 TIPARP TCDD inducible poly(ADP-ribose) polymerase 2 2
MIRT532254 TBPL2 TATA-box binding protein like 2 2 2
MIRT533801 TMED7 transmembrane p24 trafficking protein 7 2 4
MIRT535887 MLEC malectin 2 2
MIRT540704 PDPK1 3-phosphoinositide dependent protein kinase 1 2 4
MIRT544645 PHF8 PHD finger protein 8 2 4
MIRT545760 HS3ST1 heparan sulfate-glucosamine 3-sulfotransferase 1 2 2
MIRT555310 PPP2R5C protein phosphatase 2 regulatory subunit B'gamma 2 2
MIRT555877 PAFAH1B2 platelet activating factor acetylhydrolase 1b catalytic subunit 2 2 4
MIRT559507 ARID5B AT-rich interaction domain 5B 2 2
MIRT560448 SLC30A7 solute carrier family 30 member 7 2 2
MIRT561262 ZIK1 zinc finger protein interacting with K protein 1 2 2
MIRT561795 PAWR pro-apoptotic WT1 regulator 2 2
MIRT567007 KLHL15 kelch like family member 15 2 2
MIRT569298 SURF6 surfeit 6 2 2
MIRT570606 MTRNR2L11 MT-RNR2-like 11 2 2
MIRT572888 ADCY2 adenylate cyclase 2 2 2
MIRT573119 ADAMTS18 ADAM metallopeptidase with thrombospondin type 1 motif 18 2 2
MIRT608332 ZNF670 zinc finger protein 670 2 6
MIRT614942 KCNK5 potassium two pore domain channel subfamily K member 5 2 2
MIRT615324 ERN1 endoplasmic reticulum to nucleus signaling 1 2 2
MIRT618441 ZNF800 zinc finger protein 800 2 2
MIRT620110 HARBI1 harbinger transposase derived 1 2 2
MIRT626008 ZNF517 zinc finger protein 517 2 2
MIRT626626 SLC30A6 solute carrier family 30 member 6 2 2
MIRT627842 POU3F1 POU class 3 homeobox 1 2 2
MIRT628386 CACNB2 calcium voltage-gated channel auxiliary subunit beta 2 2 2
MIRT629305 PTPLAD2 3-hydroxyacyl-CoA dehydratase 4 1 1
MIRT629864 GATAD1 GATA zinc finger domain containing 1 2 2
MIRT630444 IDE insulin degrading enzyme 2 2
MIRT631854 PIGG phosphatidylinositol glycan anchor biosynthesis class G 2 2
MIRT633173 AGO3 argonaute 3, RISC catalytic component 2 2
MIRT633477 ZNF724P zinc finger protein 724 2 2
MIRT634395 PLSCR1 phospholipid scramblase 1 2 2
MIRT635538 TRIM72 tripartite motif containing 72 2 2
MIRT635821 OPA3 OPA3, outer mitochondrial membrane lipid metabolism regulator 2 2
MIRT636169 TIMM8A translocase of inner mitochondrial membrane 8A 2 2
MIRT636797 CYB5D1 cytochrome b5 domain containing 1 2 2
MIRT637952 IVD isovaleryl-CoA dehydrogenase 2 2
MIRT645136 HES2 hes family bHLH transcription factor 2 2 2
MIRT645667 ADK adenosine kinase 2 2
MIRT646148 FLVCR1 feline leukemia virus subgroup C cellular receptor 1 2 2
MIRT647004 NCR3LG1 natural killer cell cytotoxicity receptor 3 ligand 1 2 2
MIRT648187 C2orf68 chromosome 2 open reading frame 68 2 2
MIRT650090 TERF2 telomeric repeat binding factor 2 2 2
MIRT650329 RTN2 reticulon 2 2 2
MIRT654224 RNF165 ring finger protein 165 2 2
MIRT654545 RAB1A RAB1A, member RAS oncogene family 2 2
MIRT656457 MAPK14 mitogen-activated protein kinase 14 2 2
MIRT656828 KLF8 Kruppel like factor 8 2 2
MIRT657112 ITPRIPL2 inositol 1,4,5-trisphosphate receptor interacting protein like 2 2 2
MIRT657930 GATSL2 cytosolic arginine sensor for mTORC1 subunit 2 2 2
MIRT659375 CREG2 cellular repressor of E1A stimulated genes 2 2 2
MIRT659833 CARHSP1 calcium regulated heat stable protein 1 2 2
MIRT662108 LACTB lactamase beta 2 4
MIRT662789 TBC1D25 TBC1 domain family member 25 2 2
MIRT669501 ARL3 ADP ribosylation factor like GTPase 3 2 2
MIRT669759 ZNF101 zinc finger protein 101 2 4
MIRT669800 GAN gigaxonin 2 2
MIRT670050 RPP14 ribonuclease P/MRP subunit p14 2 2
MIRT670299 RBBP4 RB binding protein 4, chromatin remodeling factor 2 2
MIRT670388 EMP2 epithelial membrane protein 2 2 2
MIRT672862 C22orf29 retrotransposon Gag like 10 2 2
MIRT672890 FXN frataxin 2 2
MIRT673210 C10orf76 chromosome 10 open reading frame 76 2 2
MIRT674001 KCNN3 potassium calcium-activated channel subfamily N member 3 2 2
MIRT674163 BLOC1S3 biogenesis of lysosomal organelles complex 1 subunit 3 2 2
MIRT674502 TIRAP TIR domain containing adaptor protein 2 2
MIRT675470 NUBPL nucleotide binding protein like 2 2
MIRT675671 TMOD2 tropomodulin 2 2 2
MIRT676006 CRKL CRK like proto-oncogene, adaptor protein 2 2
MIRT676074 TIMM50 translocase of inner mitochondrial membrane 50 2 2
MIRT676386 SEC24D SEC24 homolog D, COPII coat complex component 2 2
MIRT676764 SNX2 sorting nexin 2 2 2
MIRT676896 GABPB1 GA binding protein transcription factor beta subunit 1 2 2
MIRT676978 ZNF708 zinc finger protein 708 2 2
MIRT677236 C15orf40 chromosome 15 open reading frame 40 2 2
MIRT677369 HSPA4L heat shock protein family A (Hsp70) member 4 like 2 2
MIRT677464 PDLIM3 PDZ and LIM domain 3 2 2
MIRT678081 EIF2A eukaryotic translation initiation factor 2A 2 2
MIRT678093 ATCAY ATCAY, caytaxin 2 2
MIRT678324 FBLIM1 filamin binding LIM protein 1 2 2
MIRT678417 ANKRD36 ankyrin repeat domain 36 2 2
MIRT678521 ZNF347 zinc finger protein 347 2 2
MIRT678700 TRIP11 thyroid hormone receptor interactor 11 2 2
MIRT678829 PDE6A phosphodiesterase 6A 2 2
MIRT679991 RUNDC1 RUN domain containing 1 2 2
MIRT680751 PSD4 pleckstrin and Sec7 domain containing 4 2 2
MIRT681249 ZNF383 zinc finger protein 383 2 2
MIRT681422 GTF3C6 general transcription factor IIIC subunit 6 2 2
MIRT681948 SLC19A3 solute carrier family 19 member 3 2 2
MIRT689278 C5AR2 complement component 5a receptor 2 2 2
MIRT690389 PARP15 poly(ADP-ribose) polymerase family member 15 2 2
MIRT691845 OSCAR osteoclast associated, immunoglobulin-like receptor 2 2
MIRT693863 IYD iodotyrosine deiodinase 2 2
MIRT696002 DNAJC10 DnaJ heat shock protein family (Hsp40) member C10 2 2
MIRT701930 MLLT1 MLLT1, super elongation complex subunit 2 2
MIRT702341 KLHL7 kelch like family member 7 2 2
MIRT703557 FKBP14 FK506 binding protein 14 2 2
MIRT705033 CACUL1 CDK2 associated cullin domain 1 2 2
MIRT706341 STAC2 SH3 and cysteine rich domain 2 2 2
MIRT709671 RGP1 RGP1 homolog, RAB6A GEF complex partner 1 2 2
MIRT711212 EFHB EF-hand domain family member B 2 2
MIRT718342 PURA purine rich element binding protein A 2 2
MIRT722755 SIRPB2 signal regulatory protein beta 2 2 2
MIRT723535 NFATC2IP nuclear factor of activated T-cells 2 interacting protein 2 2
MIRT724498 BFAR bifunctional apoptosis regulator 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-4680-5p Gemcitabine 60750 NSC613327 approved resistant cell line (PANC-1) (1500 ng/ml)

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